Query gi|254780858|ref|YP_003065271.1| NADH dehydrogenase I subunit F [Candidatus Liberibacter asiaticus str. psy62] Match_columns 425 No_of_seqs 156 out of 1693 Neff 5.4 Searched_HMMs 13730 Date Wed Jun 1 10:17:57 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780858.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d2fug12 c.142.1.1 (1:7-249) NA 100.0 0 0 593.1 26.0 235 4-239 6-243 (243) 2 d2fug11 a.29.12.1 (1:334-438) 100.0 6.9E-31 5E-35 225.2 7.4 93 326-418 1-94 (105) 3 d2fug13 d.15.13.1 (1:250-333) 99.9 1.1E-24 8.2E-29 183.3 7.4 83 240-325 1-84 (84) 4 d2pg3a1 c.26.2.1 (A:1-230) Que 46.2 1.5 0.00011 20.6 -0.6 12 343-354 195-206 (230) 5 d2qtva4 d.109.2.1 (A:627-768) 45.6 5 0.00036 17.1 2.0 18 321-338 118-135 (142) 6 d1f8fa1 b.35.1.2 (A:4-162,A:33 44.5 1.7 0.00012 20.2 -0.6 24 170-201 39-62 (194) 7 d1i5ga_ c.47.1.10 (A:) Trypare 36.5 6.3 0.00046 16.4 1.3 13 78-90 29-43 (144) 8 d1o73a_ c.47.1.10 (A:) Trypare 35.4 6.8 0.00049 16.2 1.3 13 78-90 29-43 (144) 9 d2v4jb2 d.58.36.2 (B:2-135) Di 34.2 9.2 0.00067 15.3 1.9 15 305-319 114-128 (134) 10 d1z6na1 c.47.1.1 (A:1-166) Hyp 32.8 6.5 0.00048 16.3 0.9 83 16-126 10-92 (166) 11 d1nd9a_ a.6.1.6 (A:) N-termina 28.3 14 0.001 14.0 2.6 24 30-53 6-29 (49) 12 d1vj0a1 b.35.1.2 (A:2-155,A:33 28.2 4.3 0.00031 17.5 -0.6 25 170-201 40-64 (184) 13 d1zzoa1 c.47.1.10 (A:45-178) L 23.5 12 0.00088 14.5 0.9 10 80-89 28-39 (134) 14 d2cvba1 c.47.1.10 (A:2-188) Pr 23.4 12 0.00086 14.6 0.9 38 78-127 33-72 (187) 15 d1n8va_ a.118.21.1 (A:) Chemos 23.0 18 0.0013 13.4 2.3 29 322-350 28-58 (101) 16 d2gtga1 a.64.1.1 (A:2-79) Sapo 21.5 19 0.0014 13.2 3.4 59 348-418 4-63 (78) 17 d1kola1 b.35.1.2 (A:2-160,A:35 21.4 7.2 0.00053 16.0 -0.6 24 170-201 43-66 (201) 18 d1ffva1 a.56.1.1 (A:82-157) Ca 20.1 14 0.001 14.0 0.8 52 345-410 20-72 (76) No 1 >d2fug12 c.142.1.1 (1:7-249) NADH-quinone oxidoreductase chain 1, Nqo1 {Thermus thermophilus [TaxId: 274]} Probab=100.00 E-value=0 Score=593.12 Aligned_cols=235 Identities=51% Similarity=0.903 Sum_probs=226.3 Q ss_pred HHHH-HHHHHCCCCCCCHHHHHHCCCHHHHHHHHH-CCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEE Q ss_conf 0343-675517876779899997799899999982-69899999999839776875711245568742356568861999 Q gi|254780858|r 4 DQDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLV 81 (425) Q Consensus 4 ~~~r-~~~~~~~~~~~~l~~y~~~ggy~~l~~~l~-~~~~~ii~~v~~sgl~GrGGAgFPt~~Kw~~~~~~~~~~~~yvv 81 (425) ++.| +|+|.+..++++|++|+++|||++|+|+++ |+|++|+++|++||||||||||||||+||+++++.. ..++||| T Consensus 6 k~~~vi~~~~~~~~~~~l~~Y~~~GGY~~l~kal~~~~pe~ii~~v~~sgL~GrGGAgFPt~~Kw~~~~~~~-~~~~yvV 84 (243) T d2fug12 6 RFERTLYAHVGKEGSWTLDYYLRHGGYETAKRVLKEKTPDEVIEEVKRSGLRGRGGAGFPTGLKWSFMPKDD-GKQHYLI 84 (243) T ss_dssp TCTTCCCCSSCCCSCCSHHHHHTTTTTHHHHHHHHHSCHHHHHHHHHTTTCBCTTSSCCBHHHHHHTSCSSS-CCCCEEE T ss_pred CHHHHHHHCCCCCCCCCHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCHHC-CCCEEEE T ss_conf 054698842799999999999986999999999973999999999998544421456898514565230104-8860798 Q ss_pred EECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCC-CCCCCCCE Q ss_conf 85767784860048999862589999999999971836389981555178999999999999868997767-67886640 Q gi|254780858|r 82 VNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVD 160 (425) Q Consensus 82 ~N~~E~EPgt~kDr~Ll~~~p~~vieG~~i~a~a~gA~~~~I~ir~ey~~~~~~l~~ai~ea~~~g~lg~~-~~~g~~~~ 160 (425) ||||||||++||||+||+++||+|||||+|+|+++||+++|||||+||++++++|++||++++++|+||++ ++++++++ T Consensus 85 vN~~E~EPg~~kDr~Ll~~~Ph~vieG~~iaa~avgA~~~~I~ir~e~~~ai~~l~~ai~~a~~~g~lg~~i~g~~~~~~ 164 (243) T d2fug12 85 CNADESEPGSFKDRYILEDVPHLLIEGMILAGYAIRATVGYIYVRGEYRRAADRLEQAIKEARARGYLGKNLFGTDFSFD 164 (243) T ss_dssp EEECCCSTTCCSHHHHHHHCHHHHHHHHHHHHHHTTCSEEEEEECTTCHHHHHHHHHHHHHHHHTTSSBSSTTSTTCCBE T ss_pred EECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEE T ss_conf 64578986344789999986999999999999973766389984446588999999999998776987766558899803 Q ss_pred EEEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCHHHHHHCCCCCCCCE Q ss_conf 6997457510011078899863089998688899862278303785000289999999999605688863389877430 Q gi|254780858|r 161 IIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239 (425) Q Consensus 161 i~v~~g~g~Yi~GeEtali~sieG~r~~Pr~kPP~p~~~Gl~g~PT~V~NVeTla~v~~i~~~G~~~y~~~G~~~~~Gt 239 (425) |+|++++++||||||||||+||||+|+.||.|||||+++||||+||+||||||+|+||.|+++|++||+++|+++++|. T Consensus 165 i~v~~~~g~Yi~GEEtaLi~sleG~~~~pr~~pP~p~~~Gl~g~PTvV~NVeTla~v~~ii~~G~~~f~~~G~~~~~G~ 243 (243) T d2fug12 165 LHVHRGAGAYICGEETALMNSLEGLRANPRLKPPFPAQSGLWGKPTTINNVETLASVVPIMERGADWFAQMGTEQSKGM 243 (243) T ss_dssp EEEEECCSCGGGGSHHHHHHHHTTSCCCCCCSSSCTTTSBGGGBCEEEEEHHHHHHHHHHHHSCHHHHHSSBCSSCBSE T ss_pred EEEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC T ss_conf 8999888753223047889986087067789999851357679988411799999999999976999995699999998 No 2 >d2fug11 a.29.12.1 (1:334-438) NADH-quinone oxidoreductase chain 1, Nqo1 {Thermus thermophilus [TaxId: 274]} Probab=99.96 E-value=6.9e-31 Score=225.21 Aligned_cols=93 Identities=35% Similarity=0.860 Sum_probs=90.4 Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCCCCHHH-HHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH Q ss_conf 6528999999999998762799885230289-999999999828999899999999998622366677650247999999 Q gi|254780858|r 326 STDIIKAIWRLSVFYKHESCGQCTPCREGTG-WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGL 404 (425) Q Consensus 326 ~~~iv~~~~~~~~F~a~ESCGkCtPCR~Gt~-~l~~il~~i~~G~a~~~Dl~~L~~la~~i~~~S~C~lG~~a~~pv~s~ 404 (425) .+|||++++++++||++||||||||||+||. |+.+++++|.+|+++++|+++|++++++|+++|+|+||+++++||+|+ T Consensus 1 ~v~~v~~~~~~~~F~~~ESCGkC~PCR~Gt~~~~~~il~~i~~G~~~~~dl~~L~~i~~~m~~~s~C~lg~~a~~pv~s~ 80 (105) T d2fug11 1 RVSMVDAMWNLTRFYAHESCGKCTPCREGVAGFMVNLFAKIGTGQGEEKDVENLEALLPLIEGRSFCPLADAAVWPVKGS 80 (105) T ss_dssp TSCHHHHHHHHHHHHHHHCCSCCHHHHHCCCCCHHHHHHHHTBTCCCHHHHHHHHHHHHHHHSCCSSTHHHHHHHHHHHH T ss_pred CCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH T ss_conf 96699999999999731358999860401999999999999938998778999999998635787580217449999999 Q ss_pred HHHCHHHHHHHHHH Q ss_conf 86388999999865 Q gi|254780858|r 405 IKNFRPLIEERIDQ 418 (425) Q Consensus 405 l~~F~dEfe~hI~~ 418 (425) |+||||||++||++ T Consensus 81 l~~F~~ef~a~i~~ 94 (105) T d2fug11 81 LRHFKDQYLALARE 94 (105) T ss_dssp HHHHHHHHHHHHHT T ss_pred HHHHHHHHHHHHHC T ss_conf 99889999999873 No 3 >d2fug13 d.15.13.1 (1:250-333) NADH-quinone oxidoreductase chain 1, Nqo1 {Thermus thermophilus [TaxId: 274]} Probab=99.90 E-value=1.1e-24 Score=183.31 Aligned_cols=83 Identities=43% Similarity=0.639 Sum_probs=76.3 Q ss_pred EEEECCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCC-CCCCCCCCCCCCHHHCCCCCCCC Q ss_conf 47642678878726893589879999998615567871100489852456565321-00245633422011038734665 Q gi|254780858|r 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPA-GQMRGAIMDYDGLKEMGSGLGTA 318 (425) Q Consensus 240 kl~tvsG~V~~Pg~~evp~Gt~l~eli~~~~GG~~~~~~~~kav~~GG~~~g~l~~-~~ld~~~ld~~~l~~~Gs~LGsg 318 (425) |+|||||+|+|||+||+|+|||++|||+++|||+.. ++||+|+||+|+++|+. ++..++|||||++++.|++|||| T Consensus 1 Kl~slsG~V~~PGvyEvp~G~tl~elI~~~~GG~~~---~~kav~~GG~s~~~l~~~~~~ld~~ld~e~l~~~G~~lGsg 77 (84) T d2fug13 1 KLYQISGPVKRPGVYELPMGTTFRELIYEWAGGPLE---PIQAIIPGGSSTPPLPFTEEVLDTPMSYEHLQAKGSMLGTG 77 (84) T ss_dssp EEEEEESSBSSCEEEEEETTCBHHHHHTTTTCCBSS---CEEEEECSCTTSCCEECCHHHHTCBCSTTTTTTTTSCCSTT T ss_pred CEEEEECCCCCCCEEEECCCCCHHHHHHHHCCCCCC---CEEEEEECCCCCCCCCCCHHHCCCCCCHHHHHHCCCCCCCE T ss_conf 979970773378479981898999999986013555---43799968887776667588828857766698749567732 Q ss_pred EEEEECC Q ss_conf 1799428 Q gi|254780858|r 319 AVIVMDR 325 (425) Q Consensus 319 ~iiV~de 325 (425) +|||||| T Consensus 78 ~iiV~dE 84 (84) T d2fug13 78 GVILIPE 84 (84) T ss_dssp EEEEEET T ss_pred EEEEECC T ss_conf 8999678 No 4 >d2pg3a1 c.26.2.1 (A:1-230) Queuosine biosynthesis protein QueC {Erwinia carotovora [TaxId: 554]} Probab=46.19 E-value=1.5 Score=20.57 Aligned_cols=12 Identities=42% Similarity=1.237 Sum_probs=9.8 Q ss_pred HHCCCCCCCCCH Q ss_conf 627998852302 Q gi|254780858|r 343 ESCGQCTPCREG 354 (425) Q Consensus 343 ESCGkCtPCR~G 354 (425) ..||+|.||.+= T Consensus 195 ~~CG~C~~C~~R 206 (230) T d2pg3a1 195 DGCGQCAACHLR 206 (230) T ss_dssp TTTSCSHHHHHH T ss_pred CCCCCCHHHHHH T ss_conf 979889869999 No 5 >d2qtva4 d.109.2.1 (A:627-768) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Probab=45.58 E-value=5 Score=17.08 Aligned_cols=18 Identities=17% Similarity=0.235 Sum_probs=9.0 Q ss_pred EEECCCCCHHHHHHHHHH Q ss_conf 994286528999999999 Q gi|254780858|r 321 IVMDRSTDIIKAIWRLSV 338 (425) Q Consensus 321 iV~de~~~iv~~~~~~~~ 338 (425) +|+.||+++-..+..+.+ T Consensus 118 ~v~TDDvSl~~Fm~hL~k 135 (142) T d2qtva4 118 IVLTDDVSLQNFMTHLQQ 135 (142) T ss_dssp CCCCCCCCHHHHHHHHHH T ss_pred CEECCCCCHHHHHHHHHH T ss_conf 045475689999999999 No 6 >d1f8fa1 b.35.1.2 (A:4-162,A:337-371) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} Probab=44.53 E-value=1.7 Score=20.24 Aligned_cols=24 Identities=25% Similarity=0.407 Sum_probs=10.2 Q ss_pred CCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCC Q ss_conf 00110788998630899986888998622783 Q gi|254780858|r 170 YICGEETALLESLEGKKGQPRLKPPFPANVGL 201 (425) Q Consensus 170 Yi~GeEtali~sieG~r~~Pr~kPP~p~~~Gl 201 (425) =||+-... ...|..+ +++|..-|. T Consensus 39 gic~sD~~---~~~G~~~-----~~~P~i~GH 62 (194) T d1f8fa1 39 GMCHTDLI---VRDQKYP-----VPLPAVLGH 62 (194) T ss_dssp ECCHHHHH---HHTTSSC-----CCSSBCCCC T ss_pred EECCCHHH---HHHHCCC-----CCCCCCCCC T ss_conf 96373676---5320124-----468852232 No 7 >d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata [TaxId: 5656]} Probab=36.54 E-value=6.3 Score=16.39 Aligned_cols=13 Identities=15% Similarity=0.143 Sum_probs=8.6 Q ss_pred EEEEEE--CCCCCCC Q ss_conf 199985--7677848 Q gi|254780858|r 78 HYLVVN--ADESEPG 90 (425) Q Consensus 78 ~yvv~N--~~E~EPg 90 (425) |+|++| |.-|.|. T Consensus 29 K~vll~FwAtWC~pC 43 (144) T d1i5ga_ 29 KTVFFYFSASWCPPS 43 (144) T ss_dssp SEEEEEEECTTCHHH T ss_pred CEEEEEEEECCCCHH T ss_conf 989999991688247 No 8 >d1o73a_ c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei brucei [TaxId: 5702]} Probab=35.40 E-value=6.8 Score=16.19 Aligned_cols=13 Identities=15% Similarity=0.125 Sum_probs=8.5 Q ss_pred EEEEEE--CCCCCCC Q ss_conf 199985--7677848 Q gi|254780858|r 78 HYLVVN--ADESEPG 90 (425) Q Consensus 78 ~yvv~N--~~E~EPg 90 (425) |+||+| +.-|.|. T Consensus 29 K~vvl~FwatwC~~C 43 (144) T d1o73a_ 29 KTVFLYFSASWCPPC 43 (144) T ss_dssp CEEEEEEECTTCHHH T ss_pred CEEEEEECHHHCCCC T ss_conf 889998672128651 No 9 >d2v4jb2 d.58.36.2 (B:2-135) Dissimilatory sulfite reductase subunit beta, DsrB {Desulfovibrio vulgaris [TaxId: 881]} Probab=34.18 E-value=9.2 Score=15.30 Aligned_cols=15 Identities=13% Similarity=0.027 Sum_probs=8.2 Q ss_pred CCCHHHCCCCCCCCE Q ss_conf 220110387346651 Q gi|254780858|r 305 YDGLKEMGSGLGTAA 319 (425) Q Consensus 305 ~~~l~~~Gs~LGsg~ 319 (425) .+.|.+.|-..|+-+ T Consensus 114 ~~eL~~~g~~~Gg~G 128 (134) T d2v4jb2 114 KEDLASRKFDGGSLK 128 (134) T ss_dssp HHHHHHCBCTTSCBS T ss_pred HHHHHHCCCCCCCCC T ss_conf 999997799778778 No 10 >d1z6na1 c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Pseudomonas aeruginosa [TaxId: 287]} Probab=32.79 E-value=6.5 Score=16.30 Aligned_cols=83 Identities=8% Similarity=0.080 Sum_probs=35.0 Q ss_pred CCCCHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCH Q ss_conf 67798999977998999999826989999999983977687571124556874235656886199985767784860048 Q gi|254780858|r 16 QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDR 95 (425) Q Consensus 16 ~~~~l~~y~~~ggy~~l~~~l~~~~~~ii~~v~~sgl~GrGGAgFPt~~Kw~~~~~~~~~~~~yvv~N~~E~EPgt~kDr 95 (425) .+.+.+.|++.+--..-....+ +........|. -++-.|++.. .++...++.-+.=|-|. T Consensus 10 ~g~~f~~~l~~~~~~~~~~~~~-----~~~~~~~~~l~------~~~~~~l~~~----~~~~~~l~~~~tWC~~C----- 69 (166) T d1z6na1 10 IGEDFAAFVGHGLATEQGAVAR-----FRQKLESNGLP------SALTERLQRI----ERRYRLLVAGEMWCPDC----- 69 (166) T ss_dssp HSBCHHHHHHTSCHHHHHHHHH-----HHHHHHHHCCC------HHHHHHHHTC----CSCEEEEEECCTTCHHH----- T ss_pred CCCCHHHHHHHHHHHHHHHHHH-----HHHCCCCCCCC------HHHHHHHHHH----CCCEEEEEEEECCCCCH----- T ss_conf 4798899997432676755443-----33203310025------7799999975----69829999992968528----- Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEEEEEC Q ss_conf 9998625899999999999718363899815 Q gi|254780858|r 96 DIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126 (425) Q Consensus 96 ~Ll~~~p~~vieG~~i~a~a~gA~~~~I~ir 126 (425) ....|. ++-+ +....+..+.+|. T Consensus 70 --~~~~P~--l~~l----~~~~~~~~~~~i~ 92 (166) T d1z6na1 70 --QINLAA--LDFA----QRLQPNIELAIIS 92 (166) T ss_dssp --HHHHHH--HHHH----HHHCTTEEEEEEC T ss_pred --HHHHHH--HHHH----HHHCCCCCEEEEE T ss_conf --999999--9999----9878998179997 No 11 >d1nd9a_ a.6.1.6 (A:) N-terminal subdomain of bacterial translation initiation factor IF2 {Escherichia coli [TaxId: 562]} Probab=28.32 E-value=14 Score=14.03 Aligned_cols=24 Identities=8% Similarity=0.299 Sum_probs=20.3 Q ss_pred HHHHHHHHCCHHHHHHHHHHCCCC Q ss_conf 999999826989999999983977 Q gi|254780858|r 30 DNVDKILEKGRDWIINEVKASGLR 53 (425) Q Consensus 30 ~~l~~~l~~~~~~ii~~v~~sgl~ 53 (425) +.|.+.+.++++.+++++++|||. T Consensus 6 k~lA~~v~~~vd~Ll~Ql~~AGl~ 29 (49) T d1nd9a_ 6 KTLAAERQTSVERLVQQFADAGIR 29 (49) T ss_dssp THHHHHHSSSHHHHHHHHHHHTSC T ss_pred HHHHHHHCCCHHHHHHHHHHCCCC T ss_conf 999999895999999999983899 No 12 >d1vj0a1 b.35.1.2 (A:2-155,A:338-367) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} Probab=28.21 E-value=4.3 Score=17.51 Aligned_cols=25 Identities=28% Similarity=0.731 Sum_probs=12.7 Q ss_pred CCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCC Q ss_conf 00110788998630899986888998622783 Q gi|254780858|r 170 YICGEETALLESLEGKKGQPRLKPPFPANVGL 201 (425) Q Consensus 170 Yi~GeEtali~sieG~r~~Pr~kPP~p~~~Gl 201 (425) =|||-.- ...+|.++ .. ++|..-|. T Consensus 40 gIC~sD~---~~~~G~~~--~~--~~P~vlGH 64 (184) T d1vj0a1 40 GVCGSDV---HMFRGEDP--RV--PLPIILGH 64 (184) T ss_dssp EECHHHH---HHHTTCCT--TC--CSSBCCCC T ss_pred CCCCCCH---HHEECCCC--CC--CCCCCCCE T ss_conf 7899715---32011577--42--10013340 No 13 >d1zzoa1 c.47.1.10 (A:45-178) Lipoprotein DsbF {Mycobacterium tuberculosis [TaxId: 1773]} Probab=23.47 E-value=12 Score=14.51 Aligned_cols=10 Identities=20% Similarity=-0.080 Sum_probs=4.8 Q ss_pred EEEE--CCCCCC Q ss_conf 9985--767784 Q gi|254780858|r 80 LVVN--ADESEP 89 (425) Q Consensus 80 vv~N--~~E~EP 89 (425) +++| +.-|.| T Consensus 28 vll~fwa~wC~~ 39 (134) T d1zzoa1 28 AVLWFWAPWCPT 39 (134) T ss_dssp EEEEEECTTCHH T ss_pred EEEEECCCCCCC T ss_conf 999850341576 No 14 >d2cvba1 c.47.1.10 (A:2-188) Probable thiol-disulfide isomerase/thioredoxin TTHA0593 {Thermus thermophilus [TaxId: 274]} Probab=23.37 E-value=12 Score=14.57 Aligned_cols=38 Identities=13% Similarity=0.075 Sum_probs=17.1 Q ss_pred EEEEEE--CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECC Q ss_conf 199985--76778486004899986258999999999997183638998155 Q gi|254780858|r 78 HYLVVN--ADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127 (425) Q Consensus 78 ~yvv~N--~~E~EPgt~kDr~Ll~~~p~~vieG~~i~a~a~gA~~~~I~ir~ 127 (425) |.||+| +..|.|. ..+.|+ +.+ .......+-.+|.|.. T Consensus 33 k~vvl~FwatwCp~C-------~~~~p~-l~~----l~~~y~~~v~~v~i~s 72 (187) T d2cvba1 33 PLLAVVFMCNHCPYV-------KGSIGE-LVA----LAERYRGKVAFVGINA 72 (187) T ss_dssp SEEEEEEECSSCHHH-------HTTHHH-HHH----HHHHTTTTEEEEEEEC T ss_pred CEEEEEEECCCCCCC-------HHHHHH-HHH----HHHHCCCCCEEEEEEC T ss_conf 839999847777640-------134322-200----1222034313554201 No 15 >d1n8va_ a.118.21.1 (A:) Chemosensory protein Csp2 {Cabbage moth (Mamestra brassicae) [TaxId: 55057]} Probab=22.99 E-value=18 Score=13.38 Aligned_cols=29 Identities=21% Similarity=0.251 Sum_probs=13.0 Q ss_pred EECCCCCHHH--HHHHHHHHHHHHHCCCCCC Q ss_conf 9428652899--9999999998762799885 Q gi|254780858|r 322 VMDRSTDIIK--AIWRLSVFYKHESCGQCTP 350 (425) Q Consensus 322 V~de~~~iv~--~~~~~~~F~a~ESCGkCtP 350 (425) ++|++-|-.+ .+...+--.-...|++||| T Consensus 28 lld~gpCt~egk~lK~~lPeal~t~C~kCT~ 58 (101) T d1n8va_ 28 VMERGKCSPEGKELKEHLQDAIENGCKKCTE 58 (101) T ss_dssp HTTSSCCCHHHHHHHHHHHHHHHHTTTTCCH T ss_pred HCCCCCCCHHHHHHHHHHHHHHHCCCCCCCH T ss_conf 7168999878999999849998714668999 No 16 >d2gtga1 a.64.1.1 (A:2-79) Saposin C {Human (Homo sapiens) [TaxId: 9606]} Probab=21.50 E-value=19 Score=13.19 Aligned_cols=59 Identities=12% Similarity=0.229 Sum_probs=35.2 Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCHHHH-HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHH Q ss_conf 8852302899999999998289998999-9999999862236667765024799999986388999999865 Q gi|254780858|r 348 CTPCREGTGWMMRVMERLVKGIAQKREI-DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418 (425) Q Consensus 348 CtPCR~Gt~~l~~il~~i~~G~a~~~Dl-~~L~~la~~i~~~S~C~lG~~a~~pv~s~l~~F~dEfe~hI~~ 418 (425) |..|+....++.+.+. .+.+.+++ +.+..++..+ +......-.++++.|-+++-..+.. T Consensus 4 C~~C~~~v~~~~~~l~----~~~t~~~I~~~l~~~C~~l--------p~~~~~~C~~~v~~y~~~ii~~l~~ 63 (78) T d2gtga1 4 CEVCEFLVKEVTKLID----NNKTEKEILDAFDKMCSKL--------PKSLSEECQEVVDTYGSSILSILLE 63 (78) T ss_dssp HHHHHHHHHHHHHHHH----TTCCHHHHHHHHHHHTTSS--------CHHHHHHHHHHHHHHHHHHHHHHHT T ss_pred CHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHC--------CCCHHHHHHHHHHHHHHHHHHHHHH T ss_conf 2888999999999981----7862999999999999857--------9602106699999889999999986 No 17 >d1kola1 b.35.1.2 (A:2-160,A:356-397) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} Probab=21.44 E-value=7.2 Score=16.01 Aligned_cols=24 Identities=21% Similarity=0.505 Sum_probs=11.1 Q ss_pred CCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCC Q ss_conf 00110788998630899986888998622783 Q gi|254780858|r 170 YICGEETALLESLEGKKGQPRLKPPFPANVGL 201 (425) Q Consensus 170 Yi~GeEtali~sieG~r~~Pr~kPP~p~~~Gl 201 (425) =||+-.-.++ .|... . ++|...|. T Consensus 43 giC~sDl~~~---~G~~~---~--~~P~v~GH 66 (201) T d1kola1 43 NICGSDQHMV---RGRTT---A--QVGLVLGH 66 (201) T ss_dssp ECCHHHHHHH---TTCSC---C--CTTCBCCC T ss_pred EECCHHHHHH---CCCCC---C--CCCEECCC T ss_conf 9765120101---49856---6--64121120 No 18 >d1ffva1 a.56.1.1 (A:82-157) Carbon monoxide (CO) dehydrogenase iron-sulfur protein, C-domain {Hydrogenophaga pseudoflava [TaxId: 47421]} Probab=20.14 E-value=14 Score=13.99 Aligned_cols=52 Identities=21% Similarity=0.376 Sum_probs=22.1 Q ss_pred CCCCCCCCCHHHHH-HHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCHH Q ss_conf 79988523028999-9999999828999899999999998622366677650247999999863889 Q gi|254780858|r 345 CGQCTPCREGTGWM-MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRP 410 (425) Q Consensus 345 CGkCtPCR~Gt~~l-~~il~~i~~G~a~~~Dl~~L~~la~~i~~~S~C~lG~~a~~pv~s~l~~F~d 410 (425) ||.||| |.-.. ..+|++ +..+.+- ++-+.|. +.+|-=+ ...+|..+++.... T Consensus 20 CGyCtP---G~im~~~~ll~~----~~~pt~~----ei~~~ls-GnlCRCt--gY~~I~~Av~~aa~ 72 (76) T d1ffva1 20 CGFCTP---GMLMRAYRFLQE----NPNPTEA----EIRMGMT-GNLCRCT--GYQNIVKAVQYAAR 72 (76) T ss_dssp SCSSHH---HHHHHHHHHHHH----CSSCCHH----HHHHHTT-TCCCSSS--CSHHHHHHHHHHHH T ss_pred CCCCCH---HHHHHHHHHHHH----CCCCCHH----HHHHHHH-CCCCCCC--CCHHHHHHHHHHHH T ss_conf 898603---999999999982----7440007----9999982-7837689--97899999999999 Done!