Query         gi|254780858|ref|YP_003065271.1| NADH dehydrogenase I subunit F [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 425
No_of_seqs    156 out of 1693
Neff          5.4 
Searched_HMMs 13730
Date          Wed Jun  1 10:17:57 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780858.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d2fug12 c.142.1.1 (1:7-249) NA 100.0       0       0  593.1  26.0  235    4-239     6-243 (243)
  2 d2fug11 a.29.12.1 (1:334-438)  100.0 6.9E-31   5E-35  225.2   7.4   93  326-418     1-94  (105)
  3 d2fug13 d.15.13.1 (1:250-333)   99.9 1.1E-24 8.2E-29  183.3   7.4   83  240-325     1-84  (84)
  4 d2pg3a1 c.26.2.1 (A:1-230) Que  46.2     1.5 0.00011   20.6  -0.6   12  343-354   195-206 (230)
  5 d2qtva4 d.109.2.1 (A:627-768)   45.6       5 0.00036   17.1   2.0   18  321-338   118-135 (142)
  6 d1f8fa1 b.35.1.2 (A:4-162,A:33  44.5     1.7 0.00012   20.2  -0.6   24  170-201    39-62  (194)
  7 d1i5ga_ c.47.1.10 (A:) Trypare  36.5     6.3 0.00046   16.4   1.3   13   78-90     29-43  (144)
  8 d1o73a_ c.47.1.10 (A:) Trypare  35.4     6.8 0.00049   16.2   1.3   13   78-90     29-43  (144)
  9 d2v4jb2 d.58.36.2 (B:2-135) Di  34.2     9.2 0.00067   15.3   1.9   15  305-319   114-128 (134)
 10 d1z6na1 c.47.1.1 (A:1-166) Hyp  32.8     6.5 0.00048   16.3   0.9   83   16-126    10-92  (166)
 11 d1nd9a_ a.6.1.6 (A:) N-termina  28.3      14   0.001   14.0   2.6   24   30-53      6-29  (49)
 12 d1vj0a1 b.35.1.2 (A:2-155,A:33  28.2     4.3 0.00031   17.5  -0.6   25  170-201    40-64  (184)
 13 d1zzoa1 c.47.1.10 (A:45-178) L  23.5      12 0.00088   14.5   0.9   10   80-89     28-39  (134)
 14 d2cvba1 c.47.1.10 (A:2-188) Pr  23.4      12 0.00086   14.6   0.9   38   78-127    33-72  (187)
 15 d1n8va_ a.118.21.1 (A:) Chemos  23.0      18  0.0013   13.4   2.3   29  322-350    28-58  (101)
 16 d2gtga1 a.64.1.1 (A:2-79) Sapo  21.5      19  0.0014   13.2   3.4   59  348-418     4-63  (78)
 17 d1kola1 b.35.1.2 (A:2-160,A:35  21.4     7.2 0.00053   16.0  -0.6   24  170-201    43-66  (201)
 18 d1ffva1 a.56.1.1 (A:82-157) Ca  20.1      14   0.001   14.0   0.8   52  345-410    20-72  (76)

No 1  
>d2fug12 c.142.1.1 (1:7-249) NADH-quinone oxidoreductase chain 1, Nqo1 {Thermus thermophilus [TaxId: 274]}
Probab=100.00  E-value=0  Score=593.12  Aligned_cols=235  Identities=51%  Similarity=0.903  Sum_probs=226.3

Q ss_pred             HHHH-HHHHHCCCCCCCHHHHHHCCCHHHHHHHHH-CCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEE
Q ss_conf             0343-675517876779899997799899999982-69899999999839776875711245568742356568861999
Q gi|254780858|r    4 DQDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLV   81 (425)
Q Consensus         4 ~~~r-~~~~~~~~~~~~l~~y~~~ggy~~l~~~l~-~~~~~ii~~v~~sgl~GrGGAgFPt~~Kw~~~~~~~~~~~~yvv   81 (425)
                      ++.| +|+|.+..++++|++|+++|||++|+|+++ |+|++|+++|++||||||||||||||+||+++++.. ..++|||
T Consensus         6 k~~~vi~~~~~~~~~~~l~~Y~~~GGY~~l~kal~~~~pe~ii~~v~~sgL~GrGGAgFPt~~Kw~~~~~~~-~~~~yvV   84 (243)
T d2fug12           6 RFERTLYAHVGKEGSWTLDYYLRHGGYETAKRVLKEKTPDEVIEEVKRSGLRGRGGAGFPTGLKWSFMPKDD-GKQHYLI   84 (243)
T ss_dssp             TCTTCCCCSSCCCSCCSHHHHHTTTTTHHHHHHHHHSCHHHHHHHHHTTTCBCTTSSCCBHHHHHHTSCSSS-CCCCEEE
T ss_pred             CHHHHHHHCCCCCCCCCHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCHHC-CCCEEEE
T ss_conf             054698842799999999999986999999999973999999999998544421456898514565230104-8860798


Q ss_pred             EECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCC-CCCCCCCE
Q ss_conf             85767784860048999862589999999999971836389981555178999999999999868997767-67886640
Q gi|254780858|r   82 VNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVD  160 (425)
Q Consensus        82 ~N~~E~EPgt~kDr~Ll~~~p~~vieG~~i~a~a~gA~~~~I~ir~ey~~~~~~l~~ai~ea~~~g~lg~~-~~~g~~~~  160 (425)
                      ||||||||++||||+||+++||+|||||+|+|+++||+++|||||+||++++++|++||++++++|+||++ ++++++++
T Consensus        85 vN~~E~EPg~~kDr~Ll~~~Ph~vieG~~iaa~avgA~~~~I~ir~e~~~ai~~l~~ai~~a~~~g~lg~~i~g~~~~~~  164 (243)
T d2fug12          85 CNADESEPGSFKDRYILEDVPHLLIEGMILAGYAIRATVGYIYVRGEYRRAADRLEQAIKEARARGYLGKNLFGTDFSFD  164 (243)
T ss_dssp             EEECCCSTTCCSHHHHHHHCHHHHHHHHHHHHHHTTCSEEEEEECTTCHHHHHHHHHHHHHHHHTTSSBSSTTSTTCCBE
T ss_pred             EECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEE
T ss_conf             64578986344789999986999999999999973766389984446588999999999998776987766558899803


Q ss_pred             EEEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCHHHHHHCCCCCCCCE
Q ss_conf             6997457510011078899863089998688899862278303785000289999999999605688863389877430
Q gi|254780858|r  161 IIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT  239 (425)
Q Consensus       161 i~v~~g~g~Yi~GeEtali~sieG~r~~Pr~kPP~p~~~Gl~g~PT~V~NVeTla~v~~i~~~G~~~y~~~G~~~~~Gt  239 (425)
                      |+|++++++||||||||||+||||+|+.||.|||||+++||||+||+||||||+|+||.|+++|++||+++|+++++|.
T Consensus       165 i~v~~~~g~Yi~GEEtaLi~sleG~~~~pr~~pP~p~~~Gl~g~PTvV~NVeTla~v~~ii~~G~~~f~~~G~~~~~G~  243 (243)
T d2fug12         165 LHVHRGAGAYICGEETALMNSLEGLRANPRLKPPFPAQSGLWGKPTTINNVETLASVVPIMERGADWFAQMGTEQSKGM  243 (243)
T ss_dssp             EEEEECCSCGGGGSHHHHHHHHTTSCCCCCCSSSCTTTSBGGGBCEEEEEHHHHHHHHHHHHSCHHHHHSSBCSSCBSE
T ss_pred             EEEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf             8999888753223047889986087067789999851357679988411799999999999976999995699999998


No 2  
>d2fug11 a.29.12.1 (1:334-438) NADH-quinone oxidoreductase chain 1, Nqo1 {Thermus thermophilus [TaxId: 274]}
Probab=99.96  E-value=6.9e-31  Score=225.21  Aligned_cols=93  Identities=35%  Similarity=0.860  Sum_probs=90.4

Q ss_pred             CCCHHHHHHHHHHHHHHHHCCCCCCCCCHHH-HHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
Q ss_conf             6528999999999998762799885230289-999999999828999899999999998622366677650247999999
Q gi|254780858|r  326 STDIIKAIWRLSVFYKHESCGQCTPCREGTG-WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGL  404 (425)
Q Consensus       326 ~~~iv~~~~~~~~F~a~ESCGkCtPCR~Gt~-~l~~il~~i~~G~a~~~Dl~~L~~la~~i~~~S~C~lG~~a~~pv~s~  404 (425)
                      .+|||++++++++||++||||||||||+||. |+.+++++|.+|+++++|+++|++++++|+++|+|+||+++++||+|+
T Consensus         1 ~v~~v~~~~~~~~F~~~ESCGkC~PCR~Gt~~~~~~il~~i~~G~~~~~dl~~L~~i~~~m~~~s~C~lg~~a~~pv~s~   80 (105)
T d2fug11           1 RVSMVDAMWNLTRFYAHESCGKCTPCREGVAGFMVNLFAKIGTGQGEEKDVENLEALLPLIEGRSFCPLADAAVWPVKGS   80 (105)
T ss_dssp             TSCHHHHHHHHHHHHHHHCCSCCHHHHHCCCCCHHHHHHHHTBTCCCHHHHHHHHHHHHHHHSCCSSTHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
T ss_conf             96699999999999731358999860401999999999999938998778999999998635787580217449999999


Q ss_pred             HHHCHHHHHHHHHH
Q ss_conf             86388999999865
Q gi|254780858|r  405 IKNFRPLIEERIDQ  418 (425)
Q Consensus       405 l~~F~dEfe~hI~~  418 (425)
                      |+||||||++||++
T Consensus        81 l~~F~~ef~a~i~~   94 (105)
T d2fug11          81 LRHFKDQYLALARE   94 (105)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHC
T ss_conf             99889999999873


No 3  
>d2fug13 d.15.13.1 (1:250-333) NADH-quinone oxidoreductase chain 1, Nqo1 {Thermus thermophilus [TaxId: 274]}
Probab=99.90  E-value=1.1e-24  Score=183.31  Aligned_cols=83  Identities=43%  Similarity=0.639  Sum_probs=76.3

Q ss_pred             EEEECCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCC-CCCCCCCCCCCCHHHCCCCCCCC
Q ss_conf             47642678878726893589879999998615567871100489852456565321-00245633422011038734665
Q gi|254780858|r  240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPA-GQMRGAIMDYDGLKEMGSGLGTA  318 (425)
Q Consensus       240 kl~tvsG~V~~Pg~~evp~Gt~l~eli~~~~GG~~~~~~~~kav~~GG~~~g~l~~-~~ld~~~ld~~~l~~~Gs~LGsg  318 (425)
                      |+|||||+|+|||+||+|+|||++|||+++|||+..   ++||+|+||+|+++|+. ++..++|||||++++.|++||||
T Consensus         1 Kl~slsG~V~~PGvyEvp~G~tl~elI~~~~GG~~~---~~kav~~GG~s~~~l~~~~~~ld~~ld~e~l~~~G~~lGsg   77 (84)
T d2fug13           1 KLYQISGPVKRPGVYELPMGTTFRELIYEWAGGPLE---PIQAIIPGGSSTPPLPFTEEVLDTPMSYEHLQAKGSMLGTG   77 (84)
T ss_dssp             EEEEEESSBSSCEEEEEETTCBHHHHHTTTTCCBSS---CEEEEECSCTTSCCEECCHHHHTCBCSTTTTTTTTSCCSTT
T ss_pred             CEEEEECCCCCCCEEEECCCCCHHHHHHHHCCCCCC---CEEEEEECCCCCCCCCCCHHHCCCCCCHHHHHHCCCCCCCE
T ss_conf             979970773378479981898999999986013555---43799968887776667588828857766698749567732


Q ss_pred             EEEEECC
Q ss_conf             1799428
Q gi|254780858|r  319 AVIVMDR  325 (425)
Q Consensus       319 ~iiV~de  325 (425)
                      +||||||
T Consensus        78 ~iiV~dE   84 (84)
T d2fug13          78 GVILIPE   84 (84)
T ss_dssp             EEEEEET
T ss_pred             EEEEECC
T ss_conf             8999678


No 4  
>d2pg3a1 c.26.2.1 (A:1-230) Queuosine biosynthesis protein QueC {Erwinia carotovora [TaxId: 554]}
Probab=46.19  E-value=1.5  Score=20.57  Aligned_cols=12  Identities=42%  Similarity=1.237  Sum_probs=9.8

Q ss_pred             HHCCCCCCCCCH
Q ss_conf             627998852302
Q gi|254780858|r  343 ESCGQCTPCREG  354 (425)
Q Consensus       343 ESCGkCtPCR~G  354 (425)
                      ..||+|.||.+=
T Consensus       195 ~~CG~C~~C~~R  206 (230)
T d2pg3a1         195 DGCGQCAACHLR  206 (230)
T ss_dssp             TTTSCSHHHHHH
T ss_pred             CCCCCCHHHHHH
T ss_conf             979889869999


No 5  
>d2qtva4 d.109.2.1 (A:627-768) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=45.58  E-value=5  Score=17.08  Aligned_cols=18  Identities=17%  Similarity=0.235  Sum_probs=9.0

Q ss_pred             EEECCCCCHHHHHHHHHH
Q ss_conf             994286528999999999
Q gi|254780858|r  321 IVMDRSTDIIKAIWRLSV  338 (425)
Q Consensus       321 iV~de~~~iv~~~~~~~~  338 (425)
                      +|+.||+++-..+..+.+
T Consensus       118 ~v~TDDvSl~~Fm~hL~k  135 (142)
T d2qtva4         118 IVLTDDVSLQNFMTHLQQ  135 (142)
T ss_dssp             CCCCCCCCHHHHHHHHHH
T ss_pred             CEECCCCCHHHHHHHHHH
T ss_conf             045475689999999999


No 6  
>d1f8fa1 b.35.1.2 (A:4-162,A:337-371) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}
Probab=44.53  E-value=1.7  Score=20.24  Aligned_cols=24  Identities=25%  Similarity=0.407  Sum_probs=10.2

Q ss_pred             CCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf             00110788998630899986888998622783
Q gi|254780858|r  170 YICGEETALLESLEGKKGQPRLKPPFPANVGL  201 (425)
Q Consensus       170 Yi~GeEtali~sieG~r~~Pr~kPP~p~~~Gl  201 (425)
                      =||+-...   ...|..+     +++|..-|.
T Consensus        39 gic~sD~~---~~~G~~~-----~~~P~i~GH   62 (194)
T d1f8fa1          39 GMCHTDLI---VRDQKYP-----VPLPAVLGH   62 (194)
T ss_dssp             ECCHHHHH---HHTTSSC-----CCSSBCCCC
T ss_pred             EECCCHHH---HHHHCCC-----CCCCCCCCC
T ss_conf             96373676---5320124-----468852232


No 7  
>d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata [TaxId: 5656]}
Probab=36.54  E-value=6.3  Score=16.39  Aligned_cols=13  Identities=15%  Similarity=0.143  Sum_probs=8.6

Q ss_pred             EEEEEE--CCCCCCC
Q ss_conf             199985--7677848
Q gi|254780858|r   78 HYLVVN--ADESEPG   90 (425)
Q Consensus        78 ~yvv~N--~~E~EPg   90 (425)
                      |+|++|  |.-|.|.
T Consensus        29 K~vll~FwAtWC~pC   43 (144)
T d1i5ga_          29 KTVFFYFSASWCPPS   43 (144)
T ss_dssp             SEEEEEEECTTCHHH
T ss_pred             CEEEEEEEECCCCHH
T ss_conf             989999991688247


No 8  
>d1o73a_ c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei brucei [TaxId: 5702]}
Probab=35.40  E-value=6.8  Score=16.19  Aligned_cols=13  Identities=15%  Similarity=0.125  Sum_probs=8.5

Q ss_pred             EEEEEE--CCCCCCC
Q ss_conf             199985--7677848
Q gi|254780858|r   78 HYLVVN--ADESEPG   90 (425)
Q Consensus        78 ~yvv~N--~~E~EPg   90 (425)
                      |+||+|  +.-|.|.
T Consensus        29 K~vvl~FwatwC~~C   43 (144)
T d1o73a_          29 KTVFLYFSASWCPPC   43 (144)
T ss_dssp             CEEEEEEECTTCHHH
T ss_pred             CEEEEEECHHHCCCC
T ss_conf             889998672128651


No 9  
>d2v4jb2 d.58.36.2 (B:2-135) Dissimilatory sulfite reductase subunit beta, DsrB {Desulfovibrio vulgaris [TaxId: 881]}
Probab=34.18  E-value=9.2  Score=15.30  Aligned_cols=15  Identities=13%  Similarity=0.027  Sum_probs=8.2

Q ss_pred             CCCHHHCCCCCCCCE
Q ss_conf             220110387346651
Q gi|254780858|r  305 YDGLKEMGSGLGTAA  319 (425)
Q Consensus       305 ~~~l~~~Gs~LGsg~  319 (425)
                      .+.|.+.|-..|+-+
T Consensus       114 ~~eL~~~g~~~Gg~G  128 (134)
T d2v4jb2         114 KEDLASRKFDGGSLK  128 (134)
T ss_dssp             HHHHHHCBCTTSCBS
T ss_pred             HHHHHHCCCCCCCCC
T ss_conf             999997799778778


No 10 
>d1z6na1 c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=32.79  E-value=6.5  Score=16.30  Aligned_cols=83  Identities=8%  Similarity=0.080  Sum_probs=35.0

Q ss_pred             CCCCHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCH
Q ss_conf             67798999977998999999826989999999983977687571124556874235656886199985767784860048
Q gi|254780858|r   16 QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDR   95 (425)
Q Consensus        16 ~~~~l~~y~~~ggy~~l~~~l~~~~~~ii~~v~~sgl~GrGGAgFPt~~Kw~~~~~~~~~~~~yvv~N~~E~EPgt~kDr   95 (425)
                      .+.+.+.|++.+--..-....+     +........|.      -++-.|++..    .++...++.-+.=|-|.     
T Consensus        10 ~g~~f~~~l~~~~~~~~~~~~~-----~~~~~~~~~l~------~~~~~~l~~~----~~~~~~l~~~~tWC~~C-----   69 (166)
T d1z6na1          10 IGEDFAAFVGHGLATEQGAVAR-----FRQKLESNGLP------SALTERLQRI----ERRYRLLVAGEMWCPDC-----   69 (166)
T ss_dssp             HSBCHHHHHHTSCHHHHHHHHH-----HHHHHHHHCCC------HHHHHHHHTC----CSCEEEEEECCTTCHHH-----
T ss_pred             CCCCHHHHHHHHHHHHHHHHHH-----HHHCCCCCCCC------HHHHHHHHHH----CCCEEEEEEEECCCCCH-----
T ss_conf             4798899997432676755443-----33203310025------7799999975----69829999992968528-----


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCEEEEEEC
Q ss_conf             9998625899999999999718363899815
Q gi|254780858|r   96 DIMRHEPHTLIEGCVIASFAIGAHCAFIYVR  126 (425)
Q Consensus        96 ~Ll~~~p~~vieG~~i~a~a~gA~~~~I~ir  126 (425)
                        ....|.  ++-+    +....+..+.+|.
T Consensus        70 --~~~~P~--l~~l----~~~~~~~~~~~i~   92 (166)
T d1z6na1          70 --QINLAA--LDFA----QRLQPNIELAIIS   92 (166)
T ss_dssp             --HHHHHH--HHHH----HHHCTTEEEEEEC
T ss_pred             --HHHHHH--HHHH----HHHCCCCCEEEEE
T ss_conf             --999999--9999----9878998179997


No 11 
>d1nd9a_ a.6.1.6 (A:) N-terminal subdomain of bacterial translation initiation factor IF2 {Escherichia coli [TaxId: 562]}
Probab=28.32  E-value=14  Score=14.03  Aligned_cols=24  Identities=8%  Similarity=0.299  Sum_probs=20.3

Q ss_pred             HHHHHHHHCCHHHHHHHHHHCCCC
Q ss_conf             999999826989999999983977
Q gi|254780858|r   30 DNVDKILEKGRDWIINEVKASGLR   53 (425)
Q Consensus        30 ~~l~~~l~~~~~~ii~~v~~sgl~   53 (425)
                      +.|.+.+.++++.+++++++|||.
T Consensus         6 k~lA~~v~~~vd~Ll~Ql~~AGl~   29 (49)
T d1nd9a_           6 KTLAAERQTSVERLVQQFADAGIR   29 (49)
T ss_dssp             THHHHHHSSSHHHHHHHHHHHTSC
T ss_pred             HHHHHHHCCCHHHHHHHHHHCCCC
T ss_conf             999999895999999999983899


No 12 
>d1vj0a1 b.35.1.2 (A:2-155,A:338-367) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}
Probab=28.21  E-value=4.3  Score=17.51  Aligned_cols=25  Identities=28%  Similarity=0.731  Sum_probs=12.7

Q ss_pred             CCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf             00110788998630899986888998622783
Q gi|254780858|r  170 YICGEETALLESLEGKKGQPRLKPPFPANVGL  201 (425)
Q Consensus       170 Yi~GeEtali~sieG~r~~Pr~kPP~p~~~Gl  201 (425)
                      =|||-.-   ...+|.++  ..  ++|..-|.
T Consensus        40 gIC~sD~---~~~~G~~~--~~--~~P~vlGH   64 (184)
T d1vj0a1          40 GVCGSDV---HMFRGEDP--RV--PLPIILGH   64 (184)
T ss_dssp             EECHHHH---HHHTTCCT--TC--CSSBCCCC
T ss_pred             CCCCCCH---HHEECCCC--CC--CCCCCCCE
T ss_conf             7899715---32011577--42--10013340


No 13 
>d1zzoa1 c.47.1.10 (A:45-178) Lipoprotein DsbF {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=23.47  E-value=12  Score=14.51  Aligned_cols=10  Identities=20%  Similarity=-0.080  Sum_probs=4.8

Q ss_pred             EEEE--CCCCCC
Q ss_conf             9985--767784
Q gi|254780858|r   80 LVVN--ADESEP   89 (425)
Q Consensus        80 vv~N--~~E~EP   89 (425)
                      +++|  +.-|.|
T Consensus        28 vll~fwa~wC~~   39 (134)
T d1zzoa1          28 AVLWFWAPWCPT   39 (134)
T ss_dssp             EEEEEECTTCHH
T ss_pred             EEEEECCCCCCC
T ss_conf             999850341576


No 14 
>d2cvba1 c.47.1.10 (A:2-188) Probable thiol-disulfide isomerase/thioredoxin TTHA0593 {Thermus thermophilus [TaxId: 274]}
Probab=23.37  E-value=12  Score=14.57  Aligned_cols=38  Identities=13%  Similarity=0.075  Sum_probs=17.1

Q ss_pred             EEEEEE--CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECC
Q ss_conf             199985--76778486004899986258999999999997183638998155
Q gi|254780858|r   78 HYLVVN--ADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG  127 (425)
Q Consensus        78 ~yvv~N--~~E~EPgt~kDr~Ll~~~p~~vieG~~i~a~a~gA~~~~I~ir~  127 (425)
                      |.||+|  +..|.|.       ..+.|+ +.+    .......+-.+|.|..
T Consensus        33 k~vvl~FwatwCp~C-------~~~~p~-l~~----l~~~y~~~v~~v~i~s   72 (187)
T d2cvba1          33 PLLAVVFMCNHCPYV-------KGSIGE-LVA----LAERYRGKVAFVGINA   72 (187)
T ss_dssp             SEEEEEEECSSCHHH-------HTTHHH-HHH----HHHHTTTTEEEEEEEC
T ss_pred             CEEEEEEECCCCCCC-------HHHHHH-HHH----HHHHCCCCCEEEEEEC
T ss_conf             839999847777640-------134322-200----1222034313554201


No 15 
>d1n8va_ a.118.21.1 (A:) Chemosensory protein Csp2 {Cabbage moth (Mamestra brassicae) [TaxId: 55057]}
Probab=22.99  E-value=18  Score=13.38  Aligned_cols=29  Identities=21%  Similarity=0.251  Sum_probs=13.0

Q ss_pred             EECCCCCHHH--HHHHHHHHHHHHHCCCCCC
Q ss_conf             9428652899--9999999998762799885
Q gi|254780858|r  322 VMDRSTDIIK--AIWRLSVFYKHESCGQCTP  350 (425)
Q Consensus       322 V~de~~~iv~--~~~~~~~F~a~ESCGkCtP  350 (425)
                      ++|++-|-.+  .+...+--.-...|++|||
T Consensus        28 lld~gpCt~egk~lK~~lPeal~t~C~kCT~   58 (101)
T d1n8va_          28 VMERGKCSPEGKELKEHLQDAIENGCKKCTE   58 (101)
T ss_dssp             HTTSSCCCHHHHHHHHHHHHHHHHTTTTCCH
T ss_pred             HCCCCCCCHHHHHHHHHHHHHHHCCCCCCCH
T ss_conf             7168999878999999849998714668999


No 16 
>d2gtga1 a.64.1.1 (A:2-79) Saposin C {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.50  E-value=19  Score=13.19  Aligned_cols=59  Identities=12%  Similarity=0.229  Sum_probs=35.2

Q ss_pred             CCCCCCHHHHHHHHHHHHHCCCCCHHHH-HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHH
Q ss_conf             8852302899999999998289998999-9999999862236667765024799999986388999999865
Q gi|254780858|r  348 CTPCREGTGWMMRVMERLVKGIAQKREI-DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ  418 (425)
Q Consensus       348 CtPCR~Gt~~l~~il~~i~~G~a~~~Dl-~~L~~la~~i~~~S~C~lG~~a~~pv~s~l~~F~dEfe~hI~~  418 (425)
                      |..|+....++.+.+.    .+.+.+++ +.+..++..+        +......-.++++.|-+++-..+..
T Consensus         4 C~~C~~~v~~~~~~l~----~~~t~~~I~~~l~~~C~~l--------p~~~~~~C~~~v~~y~~~ii~~l~~   63 (78)
T d2gtga1           4 CEVCEFLVKEVTKLID----NNKTEKEILDAFDKMCSKL--------PKSLSEECQEVVDTYGSSILSILLE   63 (78)
T ss_dssp             HHHHHHHHHHHHHHHH----TTCCHHHHHHHHHHHTTSS--------CHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHC--------CCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             2888999999999981----7862999999999999857--------9602106699999889999999986


No 17 
>d1kola1 b.35.1.2 (A:2-160,A:356-397) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}
Probab=21.44  E-value=7.2  Score=16.01  Aligned_cols=24  Identities=21%  Similarity=0.505  Sum_probs=11.1

Q ss_pred             CCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf             00110788998630899986888998622783
Q gi|254780858|r  170 YICGEETALLESLEGKKGQPRLKPPFPANVGL  201 (425)
Q Consensus       170 Yi~GeEtali~sieG~r~~Pr~kPP~p~~~Gl  201 (425)
                      =||+-.-.++   .|...   .  ++|...|.
T Consensus        43 giC~sDl~~~---~G~~~---~--~~P~v~GH   66 (201)
T d1kola1          43 NICGSDQHMV---RGRTT---A--QVGLVLGH   66 (201)
T ss_dssp             ECCHHHHHHH---TTCSC---C--CTTCBCCC
T ss_pred             EECCHHHHHH---CCCCC---C--CCCEECCC
T ss_conf             9765120101---49856---6--64121120


No 18 
>d1ffva1 a.56.1.1 (A:82-157) Carbon monoxide (CO) dehydrogenase iron-sulfur protein, C-domain {Hydrogenophaga pseudoflava [TaxId: 47421]}
Probab=20.14  E-value=14  Score=13.99  Aligned_cols=52  Identities=21%  Similarity=0.376  Sum_probs=22.1

Q ss_pred             CCCCCCCCCHHHHH-HHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCHH
Q ss_conf             79988523028999-9999999828999899999999998622366677650247999999863889
Q gi|254780858|r  345 CGQCTPCREGTGWM-MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRP  410 (425)
Q Consensus       345 CGkCtPCR~Gt~~l-~~il~~i~~G~a~~~Dl~~L~~la~~i~~~S~C~lG~~a~~pv~s~l~~F~d  410 (425)
                      ||.|||   |.-.. ..+|++    +..+.+-    ++-+.|. +.+|-=+  ...+|..+++....
T Consensus        20 CGyCtP---G~im~~~~ll~~----~~~pt~~----ei~~~ls-GnlCRCt--gY~~I~~Av~~aa~   72 (76)
T d1ffva1          20 CGFCTP---GMLMRAYRFLQE----NPNPTEA----EIRMGMT-GNLCRCT--GYQNIVKAVQYAAR   72 (76)
T ss_dssp             SCSSHH---HHHHHHHHHHHH----CSSCCHH----HHHHHTT-TCCCSSS--CSHHHHHHHHHHHH
T ss_pred             CCCCCH---HHHHHHHHHHHH----CCCCCHH----HHHHHHH-CCCCCCC--CCHHHHHHHHHHHH
T ss_conf             898603---999999999982----7440007----9999982-7837689--97899999999999


Done!