RPSBLAST alignment for GI: 254780858 and conserved domain: TIGR01959

>gnl|CDD|131014 TIGR01959, nuoF_fam, NADH-quinone oxidoreductase, F subunit. This model describes the F chain of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoF. This family does not have any members in chloroplast or cyanobacteria, where the quinone may be plastoquinone and NADH may be replaced by NADPH, nor in Methanosarcina, where NADH is replaced by F420H2. Length = 411
 Score =  697 bits (1801), Expect = 0.0
 Identities = 258/412 (62%), Positives = 306/412 (74%), Gaps = 3/412 (0%)

Query: 7   RIFTNLYGLQGKSLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMK 65
            + TNL   +  +L +   RG +D + K LE+   D II EVK SGLRGRGGAGF TG+K
Sbjct: 1   VLTTNLDNPESWTLEEYEKRGGYDALRKALEEMSPDDIIEEVKDSGLRGRGGAGFPTGLK 60

Query: 66  WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125
           WSFMPK  S +P YLV NADESEPGTCKDRD+M  +PH LIEG +IA++AIGAH  +IY+
Sbjct: 61  WSFMPKDDSPKPKYLVCNADESEPGTCKDRDLMEFDPHQLIEGMIIAAYAIGAHRGYIYI 120

Query: 126 RGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEG 184
           RGEFI+E E+L+AA+ E YA+GLLG N    G+D ++ VH GAGAYICGEETALLESLEG
Sbjct: 121 RGEFIKEAENLEAAIAEAYAAGLLGKNILGSGFDFELFVHRGAGAYICGEETALLESLEG 180

Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244
           K+GQPRLKPPFPA  GLYG PT +NNVE++A VP ILRRGA WY   G+E + GTKLFS+
Sbjct: 181 KRGQPRLKPPFPAVFGLYGKPTVINNVETLASVPAILRRGADWYRKLGKEKSPGTKLFSV 240

Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304
           SGHVN P   E  +     EL+E + GG+RGGW  L AVIPGGSS P LPA Q   A MD
Sbjct: 241 SGHVNKPGNYELPLGTPLRELLEDYAGGMRGGW-KLKAVIPGGSSTPVLPAEQHLDAPMD 299

Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364
           YD L   GS LGT AVIVMD ST ++KA+ RLS FY HESCGQCTPCREGTGWM++++ER
Sbjct: 300 YDSLAAAGSMLGTGAVIVMDESTCMVKAVRRLSEFYAHESCGQCTPCREGTGWMVKILER 359

Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           + +G   K +IDLL  V K IEG+TICALGDAAAWP+Q  IK+FR   E  I
Sbjct: 360 IEEGEGTKEDIDLLLSVCKQIEGKTICALGDAAAWPVQSAIKHFRDEFEAHI 411