RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254780858|ref|YP_003065271.1| NADH dehydrogenase I subunit F
[Candidatus Liberibacter asiaticus str. psy62]
(425 letters)
>3i9v_1 NADH-quinone oxidoreductase subunit 1; electron transport,
respiratory chain, 4Fe- 4S, cell membrane, flavoprotein,
FMN, iron; HET: FMN; 3.10A {Thermus thermophilus HB8}
PDB: 2fug_1* 3iam_1* 3ias_1* (1:1-237)
Length = 237
Score = 247 bits (632), Expect = 2e-66
Identities = 116/226 (51%), Positives = 150/226 (66%), Gaps = 3/226 (1%)
Query: 4 DQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFST 62
+ ++ ++ +L + G ++ ++L EK D +I EVK SGLRGRGGAGF T
Sbjct: 13 FERTLYAHVGKEGSWTLDYYLRHGGYETAKRVLKEKTPDEVIEEVKRSGLRGRGGAGFPT 72
Query: 63 GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122
G+KWSFMPK + HYL+ NADESEPG+ KDR I+ PH LIEG ++A +AI A +
Sbjct: 73 GLKWSFMPKDD-GKQHYLICNADESEPGSFKDRYILEDVPHLLIEGMILAGYAIRATVGY 131
Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLES 181
IYVRGE+ R + L+ A+ E A G LG N + D+ VH GAGAYICGEETAL+ S
Sbjct: 132 IYVRGEYRRAADRLEQAIKEARARGYLGKNLFGTDFSFDLHVHRGAGAYICGEETALMNS 191
Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASW 227
LEG + PRLKPPFPA GL+G PTT+NNVE++A V I+ RGA W
Sbjct: 192 LEGLRANPRLKPPFPAQSGLWGKPTTINNVETLASVVPIMERGADW 237
>3i9v_1 NADH-quinone oxidoreductase subunit 1; electron transport,
respiratory chain, 4Fe- 4S, cell membrane, flavoprotein,
FMN, iron; HET: FMN; 3.10A {Thermus thermophilus HB8}
PDB: 2fug_1* 3iam_1* 3ias_1* (1:335-438)
Length = 104
Score = 124 bits (313), Expect = 2e-29
Identities = 35/100 (35%), Positives = 61/100 (61%), Gaps = 2/100 (2%)
Query: 327 TDIIKAIWRLSVFYKHESCGQCTPCREGT-GWMMRVMERLVKGIAQKREIDLLYEVSKNI 385
++ A+W L+ FY HESCG+CTPCREG G+M+ + ++ G ++++++ L + I
Sbjct: 1 VSMVDAMWNLTRFYAHESCGKCTPCREGVAGFMVNLFAKIGTGQGEEKDVENLEALLPLI 60
Query: 386 EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425
EGR+ C L DAA WP++G +++F+ + R +
Sbjct: 61 EGRSFCPLADAAVWPVKGSLRHFKDQYLALARE-KRPVPR 99
>3i9v_1 NADH-quinone oxidoreductase subunit 1; electron transport,
respiratory chain, 4Fe- 4S, cell membrane, flavoprotein,
FMN, iron; HET: FMN; 3.10A {Thermus thermophilus HB8}
PDB: 2fug_1* 3iam_1* 3ias_1* (1:238-334)
Length = 97
Score = 109 bits (274), Expect = 8e-25
Identities = 39/98 (39%), Positives = 54/98 (55%), Gaps = 4/98 (4%)
Query: 228 YSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGG 287
++ G E ++G KL+ ISG V P E M TF ELI + G G + + A+IPGG
Sbjct: 1 FAQMGTEQSKGMKLYQISGPVKRPGVYELPMGTTFRELIYEWAG---GPLEPIQAIIPGG 57
Query: 288 SSVPCLPAG-QMRGAIMDYDGLKEMGSGLGTAAVIVMD 324
SS P LP ++ M Y+ L+ GS LGT VI++
Sbjct: 58 SSTPPLPFTEEVLDTPMSYEHLQAKGSMLGTGGVILIP 95
>3kxr_A Magnesium transporter, putative; cystathionine
beta-synthase, Mg2+ transporter, structural genomics,
PSI-2; 2.41A {Shewanella oneidensis mr-1} (A:62-120)
Length = 59
Score = 28.0 bits (62), Expect = 2.4
Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 73 CSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIE 107
C+D + +V+ + GT + DI +HEPH +
Sbjct: 26 CND--NLFIVDEADKYLGTVRRYDIFKHEPHEPLI 58
>2jii_A Serine/threonine-protein kinase VRK3 molecule: vaccinia
related kinase 3; transferase, pseudo kinase domain,
ATP-binding, nucleotide-binding; 2.00A {Homo sapiens}
(A:1-139)
Length = 139
Score = 27.5 bits (60), Expect = 3.4
Identities = 12/107 (11%), Positives = 21/107 (19%), Gaps = 2/107 (1%)
Query: 285 PGGSSVPCLPAGQMRGAIM--DYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKH 342
+S+ LP G + + ST + + F
Sbjct: 22 SMTTSLEALPTGTVLTDKSGRQWKLKSFQTRDNQGILYEAAPTSTLTCDSGPQKQKFSLK 81
Query: 343 ESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRT 389
E + V + LL + G
Sbjct: 82 LDAKDGRLFNEQNFFQRAAKPLQVNKWKKLYSTPLLAIPTCMGFGVH 128
>1jdp_A NPR-C, atrial natriuretic peptide clearance receptor;
hormone/receptor complex, natriuretic peptide receptor,
allosteric activation, signaling protein; HET: NDG NAG;
2.00A {Homo sapiens} (A:1-136,A:285-357)
Length = 209
Score = 26.5 bits (58), Expect = 6.4
Identities = 5/58 (8%), Positives = 12/58 (20%)
Query: 130 IRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKG 187
R R +++ A+ +G G + +
Sbjct: 27 TRVRPAIEYALRSVEGNGTGRRLLPPGTRFQVAYEDSDCGNRALFSLVDRVAAARGAK 84
>2e7z_A Acetylene hydratase AHY; tungstoprotein, DMSO reductase
family, iron-sulfur-cluster, lyase; HET: MGD; 1.26A
{Pelobacter acetylenicus} (A:46-136,A:384-458)
Length = 166
Score = 26.5 bits (58), Expect = 7.0
Identities = 11/68 (16%), Positives = 19/68 (27%)
Query: 1 MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
+ T +DR+ L + K R WD + + II + L
Sbjct: 7 IRTHKDRVLYPLKNVGSKRGEQRWERISWDQALDEIAEKLKKIIAKYGPESLGVSQTEIN 66
Query: 61 STGMKWSF 68
+
Sbjct: 67 QQSEYGTL 74
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.321 0.139 0.437
Gapped
Lambda K H
0.267 0.0588 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 3,461,285
Number of extensions: 162718
Number of successful extensions: 373
Number of sequences better than 10.0: 1
Number of HSP's gapped: 367
Number of HSP's successfully gapped: 8
Length of query: 425
Length of database: 4,956,049
Length adjustment: 91
Effective length of query: 334
Effective length of database: 1,879,794
Effective search space: 627851196
Effective search space used: 627851196
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.7 bits)