RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780858|ref|YP_003065271.1| NADH dehydrogenase I subunit F [Candidatus Liberibacter asiaticus str. psy62] (425 letters) >d2fug12 c.142.1.1 (1:7-249) NADH-quinone oxidoreductase chain 1, Nqo1 {Thermus thermophilus [TaxId: 274]} Length = 243 Score = 250 bits (640), Expect = 2e-67 Identities = 119/236 (50%), Positives = 156/236 (66%), Gaps = 3/236 (1%) Query: 5 QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTG 63 + ++ ++ +L + G ++ ++L EK D +I EVK SGLRGRGGAGF TG Sbjct: 8 ERTLYAHVGKEGSWTLDYYLRHGGYETAKRVLKEKTPDEVIEEVKRSGLRGRGGAGFPTG 67 Query: 64 MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123 +KWSFMPK HYL+ NADESEPG+ KDR I+ PH LIEG ++A +AI A +I Sbjct: 68 LKWSFMPKDDGK-QHYLICNADESEPGSFKDRYILEDVPHLLIEGMILAGYAIRATVGYI 126 Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESL 182 YVRGE+ R + L+ A+ E A G LG N + D+ VH GAGAYICGEETAL+ SL Sbjct: 127 YVRGEYRRAADRLEQAIKEARARGYLGKNLFGTDFSFDLHVHRGAGAYICGEETALMNSL 186 Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238 EG + PRLKPPFPA GL+G PTT+NNVE++A V I+ RGA W++ G E ++G Sbjct: 187 EGLRANPRLKPPFPAQSGLWGKPTTINNVETLASVVPIMERGADWFAQMGTEQSKG 242 >d2fug11 a.29.12.1 (1:334-438) NADH-quinone oxidoreductase chain 1, Nqo1 {Thermus thermophilus [TaxId: 274]} Length = 105 Score = 121 bits (304), Expect = 1e-28 Identities = 35/97 (36%), Positives = 60/97 (61%), Gaps = 2/97 (2%) Query: 327 TDIIKAIWRLSVFYKHESCGQCTPCREGT-GWMMRVMERLVKGIAQKREIDLLYEVSKNI 385 ++ A+W L+ FY HESCG+CTPCREG G+M+ + ++ G ++++++ L + I Sbjct: 2 VSMVDAMWNLTRFYAHESCGKCTPCREGVAGFMVNLFAKIGTGQGEEKDVENLEALLPLI 61 Query: 386 EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422 EGR+ C L DAA WP++G +++F+ + R Sbjct: 62 EGRSFCPLADAAVWPVKGSLRHFKDQYLALARE-KRP 97 >d2fug13 d.15.13.1 (1:250-333) NADH-quinone oxidoreductase chain 1, Nqo1 {Thermus thermophilus [TaxId: 274]} Length = 84 Score = 97.2 bits (242), Expect = 2e-21 Identities = 35/86 (40%), Positives = 46/86 (53%), Gaps = 4/86 (4%) Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG-QM 298 KL+ ISG V P E M TF ELI + G + + A+IPGGSS P LP ++ Sbjct: 1 KLYQISGPVKRPGVYELPMGTTFRELIYEWA---GGPLEPIQAIIPGGSSTPPLPFTEEV 57 Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMD 324 M Y+ L+ GS LGT VI++ Sbjct: 58 LDTPMSYEHLQAKGSMLGTGGVILIP 83 >d1zx5a1 b.82.1.3 (A:1-299) Putative mannosephosphate isomerase AF0035 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 299 Score = 27.3 bits (60), Expect = 2.2 Identities = 11/46 (23%), Positives = 18/46 (39%), Gaps = 1/46 (2%) Query: 231 FGRENNRGTKLFSISGHVNYPCTVEES-MSITFDELIEKHCGGIRG 275 G + + + S H + P TV ++ EL KH + G Sbjct: 28 KGFRQSGIGESWEFSAHTSRPSTVLVKGQQLSMIELFSKHRDELLG 73 >d2oc5a1 a.25.1.6 (A:20-241) Hypothetical protein PMT1231 {Prochlorococcus marinus [TaxId: 1219]} Length = 222 Score = 25.5 bits (56), Expect = 7.9 Identities = 11/27 (40%), Positives = 16/27 (59%) Query: 105 LIEGCVIASFAIGAHCAFIYVRGEFIR 131 LI+ +I +FAI A+ +I V F R Sbjct: 102 LIQALLIEAFAISAYHTYIPVSDPFAR 128 >d2c0ga1 a.71.1.1 (A:1146-1251) Windbeutel, C-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 106 Score = 25.5 bits (56), Expect = 8.2 Identities = 7/16 (43%), Positives = 9/16 (56%) Query: 33 DKILEKGRDWIINEVK 48 KI E G D++ E K Sbjct: 54 RKIHEVGYDFLEEETK 69 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.321 0.139 0.437 Gapped Lambda K H 0.267 0.0642 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 1,687,682 Number of extensions: 81249 Number of successful extensions: 172 Number of sequences better than 10.0: 1 Number of HSP's gapped: 166 Number of HSP's successfully gapped: 7 Length of query: 425 Length of database: 2,407,596 Length adjustment: 88 Effective length of query: 337 Effective length of database: 1,199,356 Effective search space: 404182972 Effective search space used: 404182972 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 54 (24.8 bits)