RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780858|ref|YP_003065271.1| NADH dehydrogenase I subunit F
[Candidatus Liberibacter asiaticus str. psy62]
         (425 letters)



>d2fug12 c.142.1.1 (1:7-249) NADH-quinone oxidoreductase chain 1,
           Nqo1 {Thermus thermophilus [TaxId: 274]}
          Length = 243

 Score =  250 bits (640), Expect = 2e-67
 Identities = 119/236 (50%), Positives = 156/236 (66%), Gaps = 3/236 (1%)

Query: 5   QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTG 63
           +  ++ ++      +L   +  G ++   ++L EK  D +I EVK SGLRGRGGAGF TG
Sbjct: 8   ERTLYAHVGKEGSWTLDYYLRHGGYETAKRVLKEKTPDEVIEEVKRSGLRGRGGAGFPTG 67

Query: 64  MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123
           +KWSFMPK      HYL+ NADESEPG+ KDR I+   PH LIEG ++A +AI A   +I
Sbjct: 68  LKWSFMPKDDGK-QHYLICNADESEPGSFKDRYILEDVPHLLIEGMILAGYAIRATVGYI 126

Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESL 182
           YVRGE+ R  + L+ A+ E  A G LG N     +  D+ VH GAGAYICGEETAL+ SL
Sbjct: 127 YVRGEYRRAADRLEQAIKEARARGYLGKNLFGTDFSFDLHVHRGAGAYICGEETALMNSL 186

Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           EG +  PRLKPPFPA  GL+G PTT+NNVE++A V  I+ RGA W++  G E ++G
Sbjct: 187 EGLRANPRLKPPFPAQSGLWGKPTTINNVETLASVVPIMERGADWFAQMGTEQSKG 242


>d2fug11 a.29.12.1 (1:334-438) NADH-quinone oxidoreductase chain 1,
           Nqo1 {Thermus thermophilus [TaxId: 274]}
          Length = 105

 Score =  121 bits (304), Expect = 1e-28
 Identities = 35/97 (36%), Positives = 60/97 (61%), Gaps = 2/97 (2%)

Query: 327 TDIIKAIWRLSVFYKHESCGQCTPCREGT-GWMMRVMERLVKGIAQKREIDLLYEVSKNI 385
             ++ A+W L+ FY HESCG+CTPCREG  G+M+ +  ++  G  ++++++ L  +   I
Sbjct: 2   VSMVDAMWNLTRFYAHESCGKCTPCREGVAGFMVNLFAKIGTGQGEEKDVENLEALLPLI 61

Query: 386 EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422
           EGR+ C L DAA WP++G +++F+        +  R 
Sbjct: 62  EGRSFCPLADAAVWPVKGSLRHFKDQYLALARE-KRP 97


>d2fug13 d.15.13.1 (1:250-333) NADH-quinone oxidoreductase chain 1,
           Nqo1 {Thermus thermophilus [TaxId: 274]}
          Length = 84

 Score = 97.2 bits (242), Expect = 2e-21
 Identities = 35/86 (40%), Positives = 46/86 (53%), Gaps = 4/86 (4%)

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG-QM 298
           KL+ ISG V  P   E  M  TF ELI +      G  + + A+IPGGSS P LP   ++
Sbjct: 1   KLYQISGPVKRPGVYELPMGTTFRELIYEWA---GGPLEPIQAIIPGGSSTPPLPFTEEV 57

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMD 324
               M Y+ L+  GS LGT  VI++ 
Sbjct: 58  LDTPMSYEHLQAKGSMLGTGGVILIP 83


>d1zx5a1 b.82.1.3 (A:1-299) Putative mannosephosphate isomerase
           AF0035 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 299

 Score = 27.3 bits (60), Expect = 2.2
 Identities = 11/46 (23%), Positives = 18/46 (39%), Gaps = 1/46 (2%)

Query: 231 FGRENNRGTKLFSISGHVNYPCTVEES-MSITFDELIEKHCGGIRG 275
            G   +   + +  S H + P TV      ++  EL  KH   + G
Sbjct: 28  KGFRQSGIGESWEFSAHTSRPSTVLVKGQQLSMIELFSKHRDELLG 73


>d2oc5a1 a.25.1.6 (A:20-241) Hypothetical protein PMT1231
           {Prochlorococcus marinus [TaxId: 1219]}
          Length = 222

 Score = 25.5 bits (56), Expect = 7.9
 Identities = 11/27 (40%), Positives = 16/27 (59%)

Query: 105 LIEGCVIASFAIGAHCAFIYVRGEFIR 131
           LI+  +I +FAI A+  +I V   F R
Sbjct: 102 LIQALLIEAFAISAYHTYIPVSDPFAR 128


>d2c0ga1 a.71.1.1 (A:1146-1251) Windbeutel, C-terminal domain
          {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
          Length = 106

 Score = 25.5 bits (56), Expect = 8.2
 Identities = 7/16 (43%), Positives = 9/16 (56%)

Query: 33 DKILEKGRDWIINEVK 48
           KI E G D++  E K
Sbjct: 54 RKIHEVGYDFLEEETK 69


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.139    0.437 

Gapped
Lambda     K      H
   0.267   0.0642    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,687,682
Number of extensions: 81249
Number of successful extensions: 172
Number of sequences better than 10.0: 1
Number of HSP's gapped: 166
Number of HSP's successfully gapped: 7
Length of query: 425
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 337
Effective length of database: 1,199,356
Effective search space: 404182972
Effective search space used: 404182972
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.8 bits)