HHsearch alignment for GI: 254780859 and conserved domain: CHL00014
>CHL00014 ndhI NADH dehydrogenase subunit I.
Probab=98.78 E-value=4.4e-09 Score=84.62 Aligned_cols=83 Identities=19% Similarity=0.372 Sum_probs=58.6
Q ss_pred CCCCCCCCCCCCCCCCCCCHHCCCHHHCCCCCHHHHHHHHCCCCCCEEE-ECCCCCC-EEEECCCCCCCCCCCCCEEECC
Q ss_conf 8674777567787888560210064329010023645432068740033-3066641-2662058755565466222012
Q gi|254780859|r 131 GSSRYSEEKRAVEDKSIGPLVKTVMNRCIHCTRCVRFITEVAGVSELGL-VGRGENA-EITTYLEQSLTSEMQGNIIDLC 208 (700)
Q Consensus 131 ~~~r~~~~k~~~~~~~~~p~i~~d~~rCI~C~RCVR~c~Ev~g~~~lg~-~~RG~~~-~i~~~~~~~~~~e~~Gncvd~C 208 (700)
T Consensus 38 vTiqYP~ek~~~~~RfRG-ri~~~~dkCI~C~~C~~vCP~--~~i~Vd~~~~~~~~kK~~~~y~ID~grCIFCG~CvEaC 114 (173)
T CHL00014 38 VTIQYPYEKLITSERFRG-RIHFEFDKCIACEVCVRVCPI--DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYC 114 (173)
T ss_pred CCCCCCCCCCCCCCCCCC-EEECCCCCCCCHHHHHHHCCC--CCEEECCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCC
T ss_conf 411398888889988687-000584117244369865977--76163355678888501146775616213036711017
Q ss_pred CCCCCCCC
Q ss_conf 12101223
Q gi|254780859|r 209 PVGALTSK 216 (700)
Q Consensus 209 PvGALt~k 216 (700)
T Consensus 115 PtdAI~mT 122 (173)
T CHL00014 115 PTNCLSMT 122 (173)
T ss_pred CCCCCCCC
T ss_conf 86803356