HHsearch alignment for GI: 254780859 and conserved domain: COG5013
>COG5013 NarG Nitrate reductase alpha subunit [Energy production and conversion].
Probab=99.92 E-value=8.9e-24 Score=190.75 Aligned_cols=377 Identities=20% Similarity=0.238 Sum_probs=232.3
Q ss_pred EEEEEECC-CCCCCCCEEEEECCCCEEEEEECC-------CCCCCCCCEECCCCC-CCCCHHHHCCCCHHHEEC------
Q ss_conf 23522012-116886436675159999885247-------888777741135542-210000000011011002------
Q gi|254780859|r 227 LTKTDSID-VMDALGSAIRIDARGCEVMRILPR-------INESINEEWISDKTR-FIWDGLKVQRLDCPYARI------ 291 (700)
Q Consensus 227 l~~~~SvC-~~C~~GC~i~v~v~~g~i~rv~~~-------~~~~vN~g~lC~KGR-f~~d~~~~dRL~~PliR~------ 291 (700)
T Consensus 44 DKvVRSTHGVNCTGSCSWkIYVKdGiITWEtQqtDYP~tgPD~PnyEPRGCPRGASfSWY~YSp~RvkyPyiRg~L~emw 123 (1227)
T COG5013 44 DKVVRSTHGVNCTGSCSWKIYVKNGLITWETQQTDYPRTGPDLPNYEPRGCPRGASFSWYLYSPNRVKYPYIRGRLIEMW 123 (1227)
T ss_pred CCEEECCCCCCCCCEEEEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHH
T ss_conf 50554157766552456889985888887302566888899998888789988774145873453203416777999999
Q ss_pred --------------------------------CCCEEECCHHHHHHHHHHHHCCCCCCEEE--EEC--C--CCCCHHHHH
Q ss_conf --------------------------------22202324145668887520134453147--850--4--323235554
Q gi|254780859|r 292 --------------------------------NGRLKPVSWDYALKAIKSAVLSSDVKLGA--VVG--D--LSSVEEIYA 333 (700)
Q Consensus 292 --------------------------------~g~~~~iSWdeAl~~ia~~L~~~~~~~g~--~~g--~--~~t~Ee~y~ 333 (700)
T Consensus 124 REAk~~~gDPV~AWa~IvedP~krk~Yk~aRGkGG~VR~~W~E~~EiIAAA~vyTIk~YGPDRv~GFSPIPAMSmVS-yA 202 (1227)
T COG5013 124 REAKARHGDPVEAWASIVEDPDKRKSYKQARGKGGFVRSSWDEVNELIAAANVYTIKTYGPDRVAGFSPIPAMSMVS-YA 202 (1227)
T ss_pred HHHHHHHCCHHHHHHHHHHCHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHH-HH
T ss_conf 99998718989999998769898888886305776688428999999987664104420885333767763020320-31
Q ss_pred H-HHHHHHCCCCCEECCCCCCCCC----HHHHCCCCCCCCCHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHCCCCEE
Q ss_conf 7-8898636877242023344466----4340125467787877401857999738532257310257789997599706
Q gi|254780859|r 334 L-KLLMQSLGCENFDCRQNGEYLD----PSYGRASYIFNPTIQGIEEADAMLIIGSNPRLEAAVLNARIRKRWRRGNFPI 408 (700)
Q Consensus 334 ~-k~l~~~lGt~nid~~~~~~~~~----~~~~~~~~~~~~~i~die~ad~illiG~Np~~~~Pvl~~rirka~~~g~~~I 408 (700)
T Consensus 203 AGaRfl~LIGGvmlSFYDWYaDLPpASPQvwGeQTDV--PESaDWynssyii~wGsNvP~TRTPDahf~te~RYkGtK~v 280 (1227)
T COG5013 203 AGARFLSLIGGVMLSFYDWYADLPPASPQTWGEQTDV--PESADWYNSSYIIAWGSNVPQTRTPDAHFFTEVRYKGTKTV 280 (1227)
T ss_pred HCCHHHHHHCCHHCCHHHHHCCCCCCCCCCCCCCCCC--CCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHCCCCEE
T ss_conf 0014998745211021033047998996434666788--86435224233577425788667886146777661587449
Q ss_pred ECCCCCHHHH------------------HHHHC-------------------------------------------C---
Q ss_conf 6168501223------------------34430-------------------------------------------4---
Q gi|254780859|r 409 AVIGDVGELR------------------YKYEH-------------------------------------------L--- 424 (700)
Q Consensus 409 ~vi~~~~~l~------------------~~~~~-------------------------------------------l--- 424 (700)
T Consensus 281 ~vspDyae~~KfaD~Wl~~~~GtD~Ala~amgHViL~Ef~v~~~~~~f~dY~r~ytD~P~Lv~L~~~dg~y~~grfLras 360 (1227)
T COG5013 281 VVSPDYAEVAKFADLWLAPKQGTDAALAMAMGHVILKEFHVDNPSDYFIDYVRRYTDMPMLVMLEERDGSYVPGRFLRAS 360 (1227)
T ss_pred EECCCHHHHHHCCCCCCCCCCCCCHHHHHCCCEEEEEEEECCCCCHHHHHHHHHHCCCCCEEEECCCCCCCCCCCEEEHH
T ss_conf 97774687552345544766788378874044089999866997489999999745785037763446876776013543
Q ss_pred --C--------------------------C--------------------------------------------------
Q ss_conf --8--------------------------9--------------------------------------------------
Q gi|254780859|r 425 --G--------------------------N-------------------------------------------------- 426 (700)
Q Consensus 425 --~--------------------------~-------------------------------------------------- 426 (700)
T Consensus 361 dl~~~~~~~~~~~wk~~~~d~~~~~~~~p~Gsig~Rwge~gkwnl~~~~~~~g~~~~~~~~l~~~~~~~~~v~fp~f~~~ 440 (1227)
T COG5013 361 DLVDELGQANNPEWKTVALDETTGELVVPNGSIGFRWGEKGKWNLELRDVATGAETELQLSLLGQHDEVAEVAFPYFGGD 440 (1227)
T ss_pred HCCCCCCCCCCCCCCHHEECCCCCCEECCCCCEEEEECCCCCEEEEECCCCCCCCCCCCHHHCCCHHHEEEEECCCCCCC
T ss_conf 30574211145300010121677844413554455407864406861256676431314211553010245503433577
Q ss_pred -----------------------------------------------------------CHHHHHHHHCCCC-----HHH
Q ss_conf -----------------------------------------------------------8678888826877-----889
Q gi|254780859|r 427 -----------------------------------------------------------GSEALADLVSGQH-----PFF 442 (700)
Q Consensus 427 -----------------------------------------------------------~~e~l~~~~~g~~-----~~~ 442 (700)
T Consensus 441 ~~~~~~~~l~r~vP~~~~~lA~gs~~~v~tvfdl~~A~yGv~Rgl~~~~~~~~y~D~~~yTPAWqE~iTgV~~~~~i~~a 520 (1227)
T COG5013 441 GGPKHDGVLLRGVPVKRLTLADGSTALVTTVFDLLLANYGVDRGLLDGNSAKSYDDPKPYTPAWQEQITGVPRAQAIRIA 520 (1227)
T ss_pred CCCCCCCEEEECCCCEEEECCCCCCEEEEEEEHHHHHHHCHHHCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHH
T ss_conf 78666762342266235431567742599971244654070103567655544688876886126565086099999999
Q ss_pred HHHHH-----CCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCC------CCCC----------------
Q ss_conf 99872-----35310235443321047469898989998874105853347542------4675----------------
Q gi|254780859|r 443 KKLQE-----ATRPLIIVGQGALRASDNVEVMANIAKLVIDVGGISDSWNGFAV------LHTV---------------- 495 (700)
Q Consensus 443 ~~l~~-----a~~~~ii~G~g~~~~~~g~~~~~al~~l~~~~G~ig~~g~G~~~------L~~~---------------- 495 (700)
T Consensus 521 rEfA~nA~~t~GRsmii~GaginHw~h~D~~YR~vlnl~~l~g~~G~nGGGWAHYVGQEKlRp~~GW~~~Afa~DW~rPP 600 (1227)
T COG5013 521 REFADNADKTHGRSMIIVGAGINHWYHSDMNYRGVLNLLMLCGCVGQNGGGWAHYVGQEKLRPQTGWQPLAFALDWQRPP 600 (1227)
T ss_pred HHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCEEECCCCCCHHHHHHCCCCCCC
T ss_conf 99875056658835689636500201167889999999998641124378513531403303320303422101467886
Q ss_pred --CCC------------------------------C---------CCHHCCCCCCCCCCCHH------------------
Q ss_conf --310------------------------------4---------52101776586523688------------------
Q gi|254780859|r 496 --ASR------------------------------V---------GALDLGFVPADDTINAM------------------ 516 (700)
Q Consensus 496 --~n~------------------------------~---------Ga~d~g~~P~~~~~~~~------------------ 516 (700)
T Consensus 601 R~~n~tsffY~htdQWRye~~~~~~l~sP~a~~~~~~~h~~D~nv~a~r~GWlPs~Pq~n~npL~~~~ea~a~g~~~~~~ 680 (1227)
T COG5013 601 RQMNSTSFFYNHTDQWRYEKVTADELLSPLADRSRYSGHLIDFNVRAERMGWLPSAPQLNRNPLDIADEAEAAGLDPVDY 680 (1227)
T ss_pred CCCCCCCEEEECCCCEECCCCCHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCHHHH
T ss_conf 33677734787054202166457665175345455578631156788873777777534788035579998728988999
Q ss_pred --HHHH----------------CCCEEEECCCCHH---------------------------------------HCC-CC
Q ss_conf --8860----------------1675998076422---------------------------------------016-65
Q gi|254780859|r 517 --NILD----------------KTDIVFLLGADEL---------------------------------------DFS-DK 538 (700)
Q Consensus 517 --~~~~----------------~~~~l~~~g~d~l---------------------------------------~~~-~~ 538 (700)
T Consensus 681 v~~~Lk~g~l~~a~EdPD~p~N~PR~lfvWRsNLlgSSgKGhEyflkhLLGt~~~~~~~~~~~~~~p~ev~w~~~apEGK 760 (1227)
T COG5013 681 VVQQLKSGKLRFAIEDPDNPENHPRNLFVWRSNLLGSSGKGHEYFLKHLLGTDIQGLDLGASDGIKPEEVEWRDEAPEGK 760 (1227)
T ss_pred HHHHHHCCCEEEEECCCCCCCCCCCEEEEEHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCCC
T ss_conf 99997558766874388985567430121102201667773799999874886545445656788860667523687761
Q ss_pred CCEEEHHHHHHHHHHHHCCEEECCCCCCCCCCE-EEEECCEEEEECCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 434502211666688745577047862024720-88208867420443288555740799999999980
Q gi|254780859|r 539 QALTVYIGSHGDRGAQSADVILPGAAYTEKSGL-WVNTEGRVQMGMRAIFPPGDAKEDWEIICALADEL 606 (700)
Q Consensus 539 ~~fvV~~d~~~t~tA~~ADVVLP~a~~~Ek~Gt-f~N~EgRvQ~~~~av~p~geak~dw~Il~~La~~L 606 (700)
T Consensus 761 LDLlv~lDFRmssT~lysDIVLPaATWYEK~DLsttDmHpfiHpfs~AvdP~WEsksDWeifk~iak~F 829 (1227)
T COG5013 761 LDLLVTLDFRMSSTCLYSDIVLPAATWYEKDDLSTTDMHPFIHPFSAAVDPAWESKSDWEIYKAIAKKF 829 (1227)
T ss_pred EEEEEEEEECCCCCEEEEEEEECCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 358999730124540132042023300220567744455545667633487433312689999999999