HHsearch alignment for GI: 254780859 and conserved domain: PRK08222
>PRK08222 hydrogenase 4 subunit H; Validated.
Probab=98.72 E-value=1.8e-08 Score=80.14 Aligned_cols=87 Identities=17% Similarity=0.245 Sum_probs=67.5
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHCCCHHHCCCCCHHHHHHHHCCCCCCEEEE---CCCCCCEEEECCCCCCC
Q ss_conf 799899838986747775677878885602100643290100236454320687400333---06664126620587555
Q gi|254780859|r 121 LQDQAIFFGFGSSRYSEEKRAVEDKSIGPLVKTVMNRCIHCTRCVRFITEVAGVSELGLV---GRGENAEITTYLEQSLT 197 (700)
Q Consensus 121 LQd~~~~~g~~~~r~~~~k~~~~~~~~~p~i~~d~~rCI~C~RCVR~c~Ev~g~~~lg~~---~RG~~~~i~~~~~~~~~ 197 (700)
T Consensus 4 llk~~lk~G~~T~~YP~e~~~~~~~fRG-~p~~d~ekCIgC~~C~~~CP~----~AI~~~~d~~~~~r----~~~id~gr 74 (181)
T PRK08222 4 LLKTIMRAGTATVKYPFAPLEVSPGFRG-KPDLMPSQCIACGACACACPA----NALTIQTDDQQNSR----TWQLYLGR 74 (181)
T ss_pred HHHHHHCCCCHHHCCCCCCCCCCCCCCC-EEECCHHHCCCHHHHHHHCCC----CCCEEEECCCCCCE----EEEECCCC
T ss_conf 9999963898020399999999999677-331681018453289875860----26687622678856----88852661
Q ss_pred CCCCCCEEECCCCCCCCCC
Q ss_conf 6546622201212101223
Q gi|254780859|r 198 SEMQGNIIDLCPVGALTSK 216 (700)
Q Consensus 198 ~e~~Gncvd~CPvGALt~k 216 (700)
T Consensus 75 CIfCG~C~EvCPt~AI~lt 93 (181)
T PRK08222 75 CIYCGRCEEVCPTRAIQLT 93 (181)
T ss_pred CCCCCHHHHHCCCCCCCCC
T ss_conf 6787724414881420677