HHsearch alignment for GI: 254780859 and conserved domain: PRK08348
>PRK08348 NADH-plastoquinone oxidoreductase subunit; Provisional.
Probab=98.66 E-value=1.9e-08 Score=80.07 Aligned_cols=82 Identities=17% Similarity=0.347 Sum_probs=57.7
Q ss_pred HCCCCCCCCCCCC-CCCCCCCCCHHCCCHHHCCCCCHHHHHHHHCCCCCCEEEECCCCCCEEEECCCCCCCCCCCCCEEE
Q ss_conf 3898674777567-787888560210064329010023645432068740033306664126620587555654662220
Q gi|254780859|r 128 FGFGSSRYSEEKR-AVEDKSIGPLVKTVMNRCIHCTRCVRFITEVAGVSELGLVGRGENAEITTYLEQSLTSEMQGNIID 206 (700)
Q Consensus 128 ~g~~~~r~~~~k~-~~~~~~~~p~i~~d~~rCI~C~RCVR~c~Ev~g~~~lg~~~RG~~~~i~~~~~~~~~~e~~Gncvd 206 (700)
T Consensus 14 ~kp~T~~YP~~~~~~~p~r~RG-~~~~d~dkCigC~~C~~~CP----~~aI~~~~~~~~~~i-----~~~~Ci~Cg~C~~ 83 (111)
T PRK08348 14 KKPATNLFPATEPVPVPENFRG-KILYNVDKCVGCRMCVTVCP----AGVFVYLPEIRKVAL-----WTGRCVFCGQCVD 83 (111)
T ss_pred CCCCCCCCCCCCCCCCCCCCCC-EEECCCCCCCCCCHHHHHCC----CCCCEECCCCCEEEE-----CCCCCCCCCCCCC
T ss_conf 9981318988776689987678-20568552828072877593----220675277666787-----7790853887577
Q ss_pred CCCCCCCCCC-CCC
Q ss_conf 1212101223-323
Q gi|254780859|r 207 LCPVGALTSK-PFA 219 (700)
Q Consensus 207 ~CPvGALt~k-~~~ 219 (700)
T Consensus 84 ~CP~~AI~~t~~~e 97 (111)
T PRK08348 84 VCPTGALQMSDDFL 97 (111)
T ss_pred CCCCCCEECCCEEE
T ss_conf 37728368768036