HHsearch alignment for GI: 254780859 and conserved domain: PRK08348

>PRK08348 NADH-plastoquinone oxidoreductase subunit; Provisional.
Probab=98.66  E-value=1.9e-08  Score=80.07  Aligned_cols=82  Identities=17%  Similarity=0.347  Sum_probs=57.7

Q ss_pred             HCCCCCCCCCCCC-CCCCCCCCCHHCCCHHHCCCCCHHHHHHHHCCCCCCEEEECCCCCCEEEECCCCCCCCCCCCCEEE
Q ss_conf             3898674777567-787888560210064329010023645432068740033306664126620587555654662220
Q gi|254780859|r  128 FGFGSSRYSEEKR-AVEDKSIGPLVKTVMNRCIHCTRCVRFITEVAGVSELGLVGRGENAEITTYLEQSLTSEMQGNIID  206 (700)
Q Consensus       128 ~g~~~~r~~~~k~-~~~~~~~~p~i~~d~~rCI~C~RCVR~c~Ev~g~~~lg~~~RG~~~~i~~~~~~~~~~e~~Gncvd  206 (700)
T Consensus        14 ~kp~T~~YP~~~~~~~p~r~RG-~~~~d~dkCigC~~C~~~CP----~~aI~~~~~~~~~~i-----~~~~Ci~Cg~C~~   83 (111)
T PRK08348         14 KKPATNLFPATEPVPVPENFRG-KILYNVDKCVGCRMCVTVCP----AGVFVYLPEIRKVAL-----WTGRCVFCGQCVD   83 (111)
T ss_pred             CCCCCCCCCCCCCCCCCCCCCC-EEECCCCCCCCCCHHHHHCC----CCCCEECCCCCEEEE-----CCCCCCCCCCCCC
T ss_conf             9981318988776689987678-20568552828072877593----220675277666787-----7790853887577


Q ss_pred             CCCCCCCCCC-CCC
Q ss_conf             1212101223-323
Q gi|254780859|r  207 LCPVGALTSK-PFA  219 (700)
Q Consensus       207 ~CPvGALt~k-~~~  219 (700)
T Consensus        84 ~CP~~AI~~t~~~e   97 (111)
T PRK08348         84 VCPTGALQMSDDFL   97 (111)
T ss_pred             CCCCCCEECCCEEE
T ss_conf             37728368768036