HHsearch alignment for GI: 254780859 and conserved domain: PTZ00305
>PTZ00305 NADH:ubiquinone oxidoreductase; Provisional.
Probab=100.00 E-value=0 Score=602.38 Aligned_cols=202 Identities=43% Similarity=0.826 Sum_probs=194.2
Q ss_pred EEEECCEEEEE-CCCCCHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 99999999996-88875889999868954612127999645600047999717988702002656645663766685379
Q gi|254780859|r 6 KLKVDGIEIEV-PSGFTILQACELAGAEIPRFCFHERLSIAGNCRMCLVEIKGIASKPQASCAMNVSDLRAGPNGELPEV 84 (700)
Q Consensus 6 ~~~Idg~~v~v-~~g~til~a~~~~gi~IP~~Cy~~~l~~~g~CRmClVeve~~~~k~~~sC~t~v~~gm~~~~~~g~~v 84 (700)
T Consensus 70 ~~~~~~~~~~~~p~eeNLLeV~eraGI~IPrFCYH~~LsiaGnCRMCLVEVEG-~~klvaSCatpV~eGM--------~V 140 (297)
T PTZ00305 70 IMFVNKRPVEIIPQEENLLEVLEREGIRVPKFCYHPILSVAGNCRMCLVQVDG-TQNLVVSCATVALPGM--------SI 140 (297)
T ss_pred EEEECCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEECC-CCCCCCCCCCCCCCCC--------EE
T ss_conf 89854887312577440999999859977766579998856763376999689-9888746376478998--------88
Q ss_pred EECCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHCCCHHHCCCCCHH
Q ss_conf 81998999999999999982789988778887888379989983898674777567787888560210064329010023
Q gi|254780859|r 85 FTKSSMVKKARAGVMEFLLINHPLDCPICDQGGECDLQDQAIFFGFGSSRYSEEKRAVEDKSIGPLVKTVMNRCIHCTRC 164 (700)
Q Consensus 85 ~t~s~~v~~~r~~vle~ll~nHpldCp~Cd~~GeC~LQd~~~~~g~~~~r~~~~k~~~~~~~~~p~i~~d~~rCI~C~RC 164 (700)
T Consensus 141 ~TnS~~VkkARk~VmEfLLiNHPlDCPICDqgGECdLQD~a~~yG~d~sRf~e~KR~V~dk~~GPlI~t~MtRCIhCTRC 220 (297)
T PTZ00305 141 ITDSRLVRDAREGNVELILINHPNDCPICEQATNCDLQNVSMNYGTDIPRYKEDKRAVQDFYFDPQTRVVLNRCIHCTRC 220 (297)
T ss_pred ECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHCCCCCCCCCCCCCCCCEECCCCCCCCCHH
T ss_conf 64999999999999999996799768878878971447889984888400104764466566797100047746465242
Q ss_pred HHHHHHCCCCCCEEEECCCCCCEEEECCCC-CCCCCCCCCEEECCCCCCCCCC
Q ss_conf 645432068740033306664126620587-5556546622201212101223
Q gi|254780859|r 165 VRFITEVAGVSELGLVGRGENAEITTYLEQ-SLTSEMQGNIIDLCPVGALTSK 216 (700)
Q Consensus 165 VR~c~Ev~g~~~lg~~~RG~~~~i~~~~~~-~~~~e~~Gncvd~CPvGALt~k 216 (700)
T Consensus 221 VRF~~Evag~~~LGmiGRG~~seI~t~ld~~~~~~~~~~~v~~lcpvg~~~~~ 273 (297)
T PTZ00305 221 VRFLNEHAQDFNLGMIGRGGLSEISTFLDELEVKTDNNMPVSQLCPVGKLYLG 273 (297)
T ss_pred HHHHHHHCCCCCCCEECCCCCCCCCHHHHHHHHHCCCCCCHHHCCCCCCEEEC
T ss_conf 43077652760013120576530023344665520037856650555404555