HHsearch alignment for GI: 254780859 and conserved domain: TIGR00384

>TIGR00384 dhsB succinate dehydrogenase and fumarate reductase iron-sulfur protein; InterPro: IPR004489 Succinate dehydrogenase and fumarate reductase are reverse directions of the same enzymatic interconversion, succinate + FAD+ = fumarate + FADH2 (1.3.99.1 from EC). In Escherichia coli, the forward and reverse reactions are catalyzed by distinct complexes: fumarate reductase operates under anaerobic conditions and succinate dehydrogenase operates under aerobic conditions. This group also includes a region of the B subunit of a cytosolic archaeal fumarate reductase.; GO: 0016491 oxidoreductase activity, 0006099 tricarboxylic acid cycle, 0006118 electron transport.
Probab=90.07  E-value=0.18  Score=29.68  Aligned_cols=185  Identities=17%  Similarity=0.246  Sum_probs=90.3

Q ss_pred             ECCEEEEECCCC-CHHHHHHHCCCC-CCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCC-CCCCC--CCCCCE
Q ss_conf             999999968887-588999986895-4612127999645600047999717988702002656645-66376--668537
Q gi|254780859|r    9 VDGIEIEVPSGF-TILQACELAGAE-IPRFCFHERLSIAGNCRMCLVEIKGIASKPQASCAMNVSD-LRAGP--NGELPE   83 (700)
Q Consensus         9 Idg~~v~v~~g~-til~a~~~~gi~-IP~~Cy~~~l~~~g~CRmClVeve~~~~k~~~sC~t~v~~-gm~~~--~~~g~~   83 (700)
T Consensus        15 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~~~c~~~~cg~c~~~~~~-~~--~l~c~~~~~~~~~~~~~~~~~~~~   90 (236)
T TIGR00384        15 LESYELPADEGTLTLLDALGYIKDELDPSLAF-RKSCRNGICGSCALKVNG-KP--RLACKTKVEDLGGPLKESNEEGTG   90 (236)
T ss_pred             HHHCCCCCCCCHHHHHHHHHHHHHHCCCCHHH-HHHHHHHHCCCCCEECCC-CC--CHHHHHHHHHHCCCHHHHHCCCCC
T ss_conf             22102333343257899999875420321134-544321001200000067-42--012232233310100010002565


Q ss_pred             EEECCHH--HHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCC--CCCCCCCCCHHCCCHHHCC
Q ss_conf             9819989--99999999999982789988778887888379989983898674777567--7878885602100643290
Q gi|254780859|r   84 VFTKSSM--VKKARAGVMEFLLINHPLDCPICDQGGECDLQDQAIFFGFGSSRYSEEKR--AVEDKSIGPLVKTVMNRCI  159 (700)
Q Consensus        84 v~t~s~~--v~~~r~~vle~ll~nHpldCp~Cd~~GeC~LQd~~~~~g~~~~r~~~~k~--~~~~~~~~p~i~~d~~rCI  159 (700)
T Consensus        91 ~~~~~p~~~~~~~~dl~~~~~~~~--------------~~~~~~~py~~~~~-~~~~~~~~~~~~p~-~~~~~~~~~~c~  154 (236)
T TIGR00384        91 VLTIEPLGNLPVIKDLVVDLGPFY--------------EKLEAVKPYLIRKG-RPEPGGKELLQTPE-EREKLDGLSGCI  154 (236)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH--------------HHHHHHHHHHHCCC-CCCCCHHHHHHCHH-HHHHHHHHHHHH
T ss_conf             268620677521455553136788--------------87765543442257-77320023430457-888766666677


Q ss_pred             CCCHHHHHHHHCCCCCC-------EEEECC--------CCCCEE--EE-CCCCCCCCCCCCCEEECCCCCCC
Q ss_conf             10023645432068740-------033306--------664126--62-05875556546622201212101
Q gi|254780859|r  160 HCTRCVRFITEVAGVSE-------LGLVGR--------GENAEI--TT-YLEQSLTSEMQGNIIDLCPVGAL  213 (700)
Q Consensus       160 ~C~RCVR~c~Ev~g~~~-------lg~~~R--------G~~~~i--~~-~~~~~~~~e~~Gncvd~CPvGAL  213 (700)
T Consensus       155 ~c~~c~~~cp~~~~~~~~~~gp~~~~~~~~~~~d~~d~~~~~~~~~~~~~~~~~~~c~~~~~c~~~cp~~~~  226 (236)
T TIGR00384       155 LCGACYSSCPAFWWNPDKFLGPAALTKAYRFLLDSRDGGTKDRLELLNNDSNGVWGCTTCGKCSEVCPKGLD  226 (236)
T ss_pred             HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCC
T ss_conf             775554320200035310124689999988740443310245676530121220012334444442122132