HHsearch alignment for GI: 254780859 and conserved domain: TIGR00384
>TIGR00384 dhsB succinate dehydrogenase and fumarate reductase iron-sulfur protein; InterPro: IPR004489 Succinate dehydrogenase and fumarate reductase are reverse directions of the same enzymatic interconversion, succinate + FAD+ = fumarate + FADH2 (1.3.99.1 from EC). In Escherichia coli, the forward and reverse reactions are catalyzed by distinct complexes: fumarate reductase operates under anaerobic conditions and succinate dehydrogenase operates under aerobic conditions. This group also includes a region of the B subunit of a cytosolic archaeal fumarate reductase.; GO: 0016491 oxidoreductase activity, 0006099 tricarboxylic acid cycle, 0006118 electron transport.
Probab=90.07 E-value=0.18 Score=29.68 Aligned_cols=185 Identities=17% Similarity=0.246 Sum_probs=90.3
Q ss_pred ECCEEEEECCCC-CHHHHHHHCCCC-CCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCC-CCCCC--CCCCCE
Q ss_conf 999999968887-588999986895-4612127999645600047999717988702002656645-66376--668537
Q gi|254780859|r 9 VDGIEIEVPSGF-TILQACELAGAE-IPRFCFHERLSIAGNCRMCLVEIKGIASKPQASCAMNVSD-LRAGP--NGELPE 83 (700)
Q Consensus 9 Idg~~v~v~~g~-til~a~~~~gi~-IP~~Cy~~~l~~~g~CRmClVeve~~~~k~~~sC~t~v~~-gm~~~--~~~g~~ 83 (700)
T Consensus 15 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~~~c~~~~cg~c~~~~~~-~~--~l~c~~~~~~~~~~~~~~~~~~~~ 90 (236)
T TIGR00384 15 LESYELPADEGTLTLLDALGYIKDELDPSLAF-RKSCRNGICGSCALKVNG-KP--RLACKTKVEDLGGPLKESNEEGTG 90 (236)
T ss_pred HHHCCCCCCCCHHHHHHHHHHHHHHCCCCHHH-HHHHHHHHCCCCCEECCC-CC--CHHHHHHHHHHCCCHHHHHCCCCC
T ss_conf 22102333343257899999875420321134-544321001200000067-42--012232233310100010002565
Q ss_pred EEECCHH--HHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCC--CCCCCCCCCHHCCCHHHCC
Q ss_conf 9819989--99999999999982789988778887888379989983898674777567--7878885602100643290
Q gi|254780859|r 84 VFTKSSM--VKKARAGVMEFLLINHPLDCPICDQGGECDLQDQAIFFGFGSSRYSEEKR--AVEDKSIGPLVKTVMNRCI 159 (700)
Q Consensus 84 v~t~s~~--v~~~r~~vle~ll~nHpldCp~Cd~~GeC~LQd~~~~~g~~~~r~~~~k~--~~~~~~~~p~i~~d~~rCI 159 (700)
T Consensus 91 ~~~~~p~~~~~~~~dl~~~~~~~~--------------~~~~~~~py~~~~~-~~~~~~~~~~~~p~-~~~~~~~~~~c~ 154 (236)
T TIGR00384 91 VLTIEPLGNLPVIKDLVVDLGPFY--------------EKLEAVKPYLIRKG-RPEPGGKELLQTPE-EREKLDGLSGCI 154 (236)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH--------------HHHHHHHHHHHCCC-CCCCCHHHHHHCHH-HHHHHHHHHHHH
T ss_conf 268620677521455553136788--------------87765543442257-77320023430457-888766666677
Q ss_pred CCCHHHHHHHHCCCCCC-------EEEECC--------CCCCEE--EE-CCCCCCCCCCCCCEEECCCCCCC
Q ss_conf 10023645432068740-------033306--------664126--62-05875556546622201212101
Q gi|254780859|r 160 HCTRCVRFITEVAGVSE-------LGLVGR--------GENAEI--TT-YLEQSLTSEMQGNIIDLCPVGAL 213 (700)
Q Consensus 160 ~C~RCVR~c~Ev~g~~~-------lg~~~R--------G~~~~i--~~-~~~~~~~~e~~Gncvd~CPvGAL 213 (700)
T Consensus 155 ~c~~c~~~cp~~~~~~~~~~gp~~~~~~~~~~~d~~d~~~~~~~~~~~~~~~~~~~c~~~~~c~~~cp~~~~ 226 (236)
T TIGR00384 155 LCGACYSSCPAFWWNPDKFLGPAALTKAYRFLLDSRDGGTKDRLELLNNDSNGVWGCTTCGKCSEVCPKGLD 226 (236)
T ss_pred HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCC
T ss_conf 775554320200035310124689999988740443310245676530121220012334444442122132