HHsearch alignment for GI: 254780859 and conserved domain: TIGR00402
>TIGR00402 napF ferredoxin-type protein NapF; InterPro: IPR004496 Members of this family are the ferredoxin-type protein subunits of nitrate reductase. These NapF proteins are involved in electron transfer, and contain iron-sulphur centres similar to those of bacterial-type 4FE-4S ferredoxins.; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0006118 electron transport.
Probab=96.65 E-value=0.0012 Score=45.34 Aligned_cols=93 Identities=18% Similarity=0.380 Sum_probs=63.4
Q ss_pred HHHCCCCCHHHHHHHHCCCCCCEEEECCCCC--CEEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf 4329010023645432068740033306664--12662058755565466222012121012233233344430235220
Q gi|254780859|r 155 MNRCIHCTRCVRFITEVAGVSELGLVGRGEN--AEITTYLEQSLTSEMQGNIIDLCPVGALTSKPFAFTGRSWELTKTDS 232 (700)
Q Consensus 155 ~~rCI~C~RCVR~c~Ev~g~~~lg~~~RG~~--~~i~~~~~~~~~~e~~Gncvd~CPvGALt~k~~~~~~Rpwel~~~~S 232 (700)
T Consensus 38 ~a~CtrCg~C~saCen-------nil~~g~~G~p~v~f---dn~eC~fCgkCa~aCp~~~f~Pr----~~~~w~l~~~is 103 (161)
T TIGR00402 38 VARCTRCGECLSACEN-------NILQKGDAGYPEVEF---DNAECDFCGKCAEACPESLFYPR----FTRDWDLKIDIS 103 (161)
T ss_pred EEEECCCCCHHHHCCC-------CEEEECCCCCEEEEE---ECCCCCCCCHHHHHCCCCCCCCC----CCCCCCCCEEEE
T ss_conf 6631884340301784-------506516788506887---56876722122642875557888----888621230020
Q ss_pred ---------CCCCCCCCCEEEEECCCCEEEEE-ECCCCC
Q ss_conf ---------12116886436675159999885-247888
Q gi|254780859|r 233 ---------IDVMDALGSAIRIDARGCEVMRI-LPRINE 261 (700)
Q Consensus 233 ---------vC~~C~~GC~i~v~v~~g~i~rv-~~~~~~ 261 (700)
T Consensus 104 ~acL~~Q~~~C~~CQ~~C~~~AI~~~~~~~GiyqPqln~ 142 (161)
T TIGR00402 104 SACLILQSVECRDCQDACELQAIISRLELDGIYQPQLNS 142 (161)
T ss_pred EEEEEECCCCCCCCCCCCCCCEEEEEEEECEEECCCCCC
T ss_conf 267774078771111137750455300003012454343