HHsearch alignment for GI: 254780859 and conserved domain: TIGR01591
>TIGR01591 Fdh-alpha formate dehydrogenase, alpha subunit; InterPro: IPR006478 This group of sequences describe a subset of formate dehydrogenase alpha chains found mainly in the archaea but also in alpha and gamma proteobacteria and a small number of Gram-positive bacteria. The alpha chain contains domains for molybdopterin dinucleotide binding and molybdopterin oxidoreductase. The holo-enzyme also contains beta and gamma subunits. The enzyme catalyzes the oxidation of formate (produced from pyruvate during anaerobic growth) to carbon dioxide with the concomitant release of two electrons and two protons. The enzyme's purpose is to allow growth on formate in some circumstances and, in the case of FdhH in gamma proteobacteria, to pass electrons to hydrogenase (by which process acid is neutralized) . The alpha subunit of a version of nitrate reductase is closely related.; GO: 0008863 formate dehydrogenase activity, 0015942 formate metabolic process, 0009326 formate dehydrogenase complex.
Probab=100.00 E-value=0 Score=832.29 Aligned_cols=467 Identities=25% Similarity=0.342 Sum_probs=397.4
Q ss_pred ECCCCCCCCCEEEEECCCCEEEEEECCCCCCCCCCEECCCCCCCCCHHH-----HCCCCHHHEEC--CCCEEECCHHHHH
Q ss_conf 0121168864366751599998852478887777411355422100000-----00011011002--2220232414566
Q gi|254780859|r 232 SIDVMDALGSAIRIDARGCEVMRILPRINESINEEWISDKTRFIWDGLK-----VQRLDCPYARI--NGRLKPVSWDYAL 304 (700)
Q Consensus 232 SvC~~C~~GC~i~v~v~~g~i~rv~~~~~~~vN~g~lC~KGRf~~d~~~-----~dRL~~PliR~--~g~~~~iSWdeAl 304 (700)
T Consensus 1 TvCpYCGvGC~~~~~v~d~~i~rv~P~~~~~~N~G~~C~KG~fa~e~i~~tqil~dRl~~PLiRe~~~d~f~~~sWdEAi 80 (694)
T TIGR01591 1 TVCPYCGVGCSLNLVVKDEKIVRVEPYKEGKANRGKLCVKGKFAYEFIYSTQILKDRLTTPLIREKIGDKFREVSWDEAI 80 (694)
T ss_pred CCCCCCCCCCCEEEEEECCEEEEEEECCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHCCCCEEEECCCCCEEECHHHHH
T ss_conf 94033155664478982878998872588878866024774302112230100003324873254038941051478999
Q ss_pred HHHHHHHCCCCCCEE-----EEECCCCC-CHHHHHHHHHHH-HCCCCCEECCCCCCCCCHHHHC----CCCCCCCCHHHH
Q ss_conf 888752013445314-----78504323-235554788986-3687724202334446643401----254677878774
Q gi|254780859|r 305 KAIKSAVLSSDVKLG-----AVVGDLSS-VEEIYALKLLMQ-SLGCENFDCRQNGEYLDPSYGR----ASYIFNPTIQGI 373 (700)
Q Consensus 305 ~~ia~~L~~~~~~~g-----~~~g~~~t-~Ee~y~~k~l~~-~lGt~nid~~~~~~~~~~~~~~----~~~~~~~~i~di 373 (700)
T Consensus 81 ~~iA~kL~~I~e~YGp~~Igf~~ssr~tGNEe~Y~~QKlAR~~~GTNNvD~CAR~CH~Ps~~gL~~~~G~GA~s~~~~~i 160 (694)
T TIGR01591 81 SYIAKKLKEIKEKYGPDSIGFIASSRITGNEENYLLQKLARAVLGTNNVDNCARVCHEPSVAGLKQTVGIGAMSNTISDI 160 (694)
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHH
T ss_conf 99999999886214832144420378875236789999999985037745545403787899999762455335520344
Q ss_pred HCCCEEEEECCCCCCCCCCHHHHHHHHH-HCCCCEEECCCCCHHHHH----H----------------------------
Q ss_conf 0185799973853225731025778999-759970661685012233----4----------------------------
Q gi|254780859|r 374 EEADAMLIIGSNPRLEAAVLNARIRKRW-RRGNFPIAVIGDVGELRY----K---------------------------- 420 (700)
Q Consensus 374 e~ad~illiG~Np~~~~Pvl~~rirka~-~~g~~~I~vi~~~~~l~~----~---------------------------- 420 (700)
T Consensus 161 e~a~~ivi~G~N~~esHPvv~~~l~~AKk~nGaKiiV~DpR~t~taksahi~AD~~i~~k~GTdial~na~a~viI~egL 240 (694)
T TIGR01591 161 ENADLIVIIGANPAESHPVVASKLMRAKKRNGAKIIVIDPRKTETAKSAHIIADLFIPLKPGTDIALLNAVANVIIEEGL 240 (694)
T ss_pred HCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHCCCEEEECCCCHHHHHHHHHHHEEECCCC
T ss_conf 32775899756765554368999999985089789997588860232211101106517997089999732002422786
Q ss_pred --HH----CC-CCCHHHHHHHHCC-CCH----------------HHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf --43----04-8986788888268-778----------------899987235310235443321047469898989998
Q gi|254780859|r 421 --YE----HL-GNGSEALADLVSG-QHP----------------FFKKLQEATRPLIIVGQGALRASDNVEVMANIAKLV 476 (700)
Q Consensus 421 --~~----~l-~~~~e~l~~~~~g-~~~----------------~~~~l~~a~~~~ii~G~g~~~~~~g~~~~~al~~l~ 476 (700)
T Consensus 241 ~Dk~Fi~~R~~W~~F~E~r~~V~~~yTpE~vE~ITgV~~d~Ir~~A~~yA~a~~~Ai~wGlGvTq~~~Gv~tV~~~~nLA 320 (694)
T TIGR01591 241 YDKEFIEKRTDWEGFEEFREIVKGKYTPEYVEKITGVPADLIREIARMYAKAGSAAILWGLGVTQHSQGVETVMALANLA 320 (694)
T ss_pred CCHHHHHHHCCCCCHHHHHHHHCCCCCHHHCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCEEEHHHHHHHHHHHHHH
T ss_conf 16688975148785378887750478753222125788889999999983589679995550200013556999999999
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCHHCCCCCC----------------------------CCCCCHHHHHH-----CCC
Q ss_conf 874105853347542467531045210177658----------------------------65236888860-----167
Q gi|254780859|r 477 IDVGGISDSWNGFAVLHTVASRVGALDLGFVPA----------------------------DDTINAMNILD-----KTD 523 (700)
Q Consensus 477 ~~~G~ig~~g~G~~~L~~~~n~~Ga~d~g~~P~----------------------------~~~~~~~~~~~-----~~~ 523 (700)
T Consensus 321 llTGN~G~~G~Gv~P~RGQNNVQGacDmG~lp~~lPGY~~~~d~~~~~~~~~~WG~~~L~~~~GL~Ipe~~da~~~G~~k 400 (694)
T TIGR01591 321 LLTGNIGKPGGGVNPLRGQNNVQGACDMGALPEFLPGYRKLSDEEVREKFEKLWGVVKLPAEPGLRIPEMIDAALDGDLK 400 (694)
T ss_pred HHHCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCEECCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCEE
T ss_conf 99603674776220247755532210147888887786744836899999862783118668897322378998549716
Q ss_pred EEEECCCCHH----------HCCCCCCEEEHHHHHHHHHHHHCCEEECCCCCCCCCCEEEEECCEEEEECCCCCCCCCCC
Q ss_conf 5998076422----------016654345022116666887455770478620247208820886742044328855574
Q gi|254780859|r 524 IVFLLGADEL----------DFSDKQALTVYIGSHGDRGAQSADVILPGAAYTEKSGLWVNTEGRVQMGMRAIFPPGDAK 593 (700)
Q Consensus 524 ~l~~~g~d~l----------~~~~~~~fvV~~d~~~t~tA~~ADVVLP~a~~~Ek~Gtf~N~EgRvQ~~~~av~p~geak 593 (700)
T Consensus 401 alYI~GEdp~~sDp~~~~V~~aL~~lellVVqD~F~T~TA~yAdvvLPaa~w~EkeGtftN~eRriq~~~Ka~eP~gesk 480 (694)
T TIGR01591 401 ALYIVGEDPVISDPDTKKVRKALEKLELLVVQDIFMTETAKYADVVLPAAAWAEKEGTFTNAERRIQRFFKAVEPKGESK 480 (694)
T ss_pred EEEEECCCCEEECCCHHHHHHHHHCCCEEEEECCCHHHHHHHCCCCCCCCCCCCCCCEEEECCCEEEEEEEEECCCCCCC
T ss_conf 99983585022379858999897538637970756133773526003442211347627705761777887535674654
Q ss_pred HHHHHHHHHHHHHCCC---CCCCCHHHHHHHHHHHCCCCCCCCCC-----CCCCCCCCCCCCCC-CCCCCCCCCCC----
Q ss_conf 0799999999980779---96879899999999978111055422-----42211232112334-44446563111----
Q gi|254780859|r 594 EDWEIICALADELKCS---LPFSSLSQLRSHLYSHHPHFMQLDEI-----RPSATDGIYALAKK-VGKMQKRNFVS---- 660 (700)
Q Consensus 594 ~dw~Il~~La~~LG~~---~~~~~~~ei~~ei~~~~P~~~~~~~~-----~~~~~~~~~~~~~~-~~~~~~~~~~~---- 660 (700)
T Consensus 481 ~DWeI~~~lA~~lG~~gemf~Y~~~~~i~~Ei~~~~p~f~~~~~~~l~~~~~~~wp~~~~~~~~GT~~Ly~d~F~tP~Gk 560 (694)
T TIGR01591 481 PDWEIIQELANALGLDGEMFNYNHPKEIFEEIRELTPLFAGLNYERLEELGSLQWPCNDEDASPGTPLLYKDKFATPDGK 560 (694)
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCC
T ss_conf 23899999999728788756778888999999985776668646550575544478888887688840110355589974
Q ss_pred --------------------------CCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf --------------------------2246312489885238999999998776666888776409
Q gi|254780859|r 661 --------------------------TVENFYLANSIARASATMAQCSLVAQSCEKRIFDSAKELG 700 (700)
Q Consensus 661 --------------------------~~~nfY~td~isr~S~tM~~c~~~~~~~~~~~~~~a~~~~ 700 (700)
T Consensus 561 a~F~~~e~~~p~e~~~~~yPliL~TgR~l~hY~~g~mT~R~~~l~~--~~~e~~v~I~~EDA~~lg 624 (694)
T TIGR01591 561 AKFIPLEWVAPIEEPDDEYPLILTTGRVLTHYNVGEMTRRVAGLRR--KVPEPFVEINTEDAEKLG 624 (694)
T ss_pred EEEEEECCCCCCCCCCCCCCEEEEEEEEEEEEECHHHHCCCHHHHH--HCCCCEEEECHHHHHHCC
T ss_conf 6887632003457888861558980159887405454305547775--278982763158897558