HHsearch alignment for GI: 254780859 and conserved domain: TIGR01591

>TIGR01591 Fdh-alpha formate dehydrogenase, alpha subunit; InterPro: IPR006478 This group of sequences describe a subset of formate dehydrogenase alpha chains found mainly in the archaea but also in alpha and gamma proteobacteria and a small number of Gram-positive bacteria. The alpha chain contains domains for molybdopterin dinucleotide binding and molybdopterin oxidoreductase. The holo-enzyme also contains beta and gamma subunits. The enzyme catalyzes the oxidation of formate (produced from pyruvate during anaerobic growth) to carbon dioxide with the concomitant release of two electrons and two protons. The enzyme's purpose is to allow growth on formate in some circumstances and, in the case of FdhH in gamma proteobacteria, to pass electrons to hydrogenase (by which process acid is neutralized) . The alpha subunit of a version of nitrate reductase is closely related.; GO: 0008863 formate dehydrogenase activity, 0015942 formate metabolic process, 0009326 formate dehydrogenase complex.
Probab=100.00  E-value=0  Score=832.29  Aligned_cols=467  Identities=25%  Similarity=0.342  Sum_probs=397.4

Q ss_pred             ECCCCCCCCCEEEEECCCCEEEEEECCCCCCCCCCEECCCCCCCCCHHH-----HCCCCHHHEEC--CCCEEECCHHHHH
Q ss_conf             0121168864366751599998852478887777411355422100000-----00011011002--2220232414566
Q gi|254780859|r  232 SIDVMDALGSAIRIDARGCEVMRILPRINESINEEWISDKTRFIWDGLK-----VQRLDCPYARI--NGRLKPVSWDYAL  304 (700)
Q Consensus       232 SvC~~C~~GC~i~v~v~~g~i~rv~~~~~~~vN~g~lC~KGRf~~d~~~-----~dRL~~PliR~--~g~~~~iSWdeAl  304 (700)
T Consensus         1 TvCpYCGvGC~~~~~v~d~~i~rv~P~~~~~~N~G~~C~KG~fa~e~i~~tqil~dRl~~PLiRe~~~d~f~~~sWdEAi   80 (694)
T TIGR01591         1 TVCPYCGVGCSLNLVVKDEKIVRVEPYKEGKANRGKLCVKGKFAYEFIYSTQILKDRLTTPLIREKIGDKFREVSWDEAI   80 (694)
T ss_pred             CCCCCCCCCCCEEEEEECCEEEEEEECCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHCCCCEEEECCCCCEEECHHHHH
T ss_conf             94033155664478982878998872588878866024774302112230100003324873254038941051478999


Q ss_pred             HHHHHHHCCCCCCEE-----EEECCCCC-CHHHHHHHHHHH-HCCCCCEECCCCCCCCCHHHHC----CCCCCCCCHHHH
Q ss_conf             888752013445314-----78504323-235554788986-3687724202334446643401----254677878774
Q gi|254780859|r  305 KAIKSAVLSSDVKLG-----AVVGDLSS-VEEIYALKLLMQ-SLGCENFDCRQNGEYLDPSYGR----ASYIFNPTIQGI  373 (700)
Q Consensus       305 ~~ia~~L~~~~~~~g-----~~~g~~~t-~Ee~y~~k~l~~-~lGt~nid~~~~~~~~~~~~~~----~~~~~~~~i~di  373 (700)
T Consensus        81 ~~iA~kL~~I~e~YGp~~Igf~~ssr~tGNEe~Y~~QKlAR~~~GTNNvD~CAR~CH~Ps~~gL~~~~G~GA~s~~~~~i  160 (694)
T TIGR01591        81 SYIAKKLKEIKEKYGPDSIGFIASSRITGNEENYLLQKLARAVLGTNNVDNCARVCHEPSVAGLKQTVGIGAMSNTISDI  160 (694)
T ss_pred             HHHHHHHHHHHHCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHH
T ss_conf             99999999886214832144420378875236789999999985037745545403787899999762455335520344


Q ss_pred             HCCCEEEEECCCCCCCCCCHHHHHHHHH-HCCCCEEECCCCCHHHHH----H----------------------------
Q ss_conf             0185799973853225731025778999-759970661685012233----4----------------------------
Q gi|254780859|r  374 EEADAMLIIGSNPRLEAAVLNARIRKRW-RRGNFPIAVIGDVGELRY----K----------------------------  420 (700)
Q Consensus       374 e~ad~illiG~Np~~~~Pvl~~rirka~-~~g~~~I~vi~~~~~l~~----~----------------------------  420 (700)
T Consensus       161 e~a~~ivi~G~N~~esHPvv~~~l~~AKk~nGaKiiV~DpR~t~taksahi~AD~~i~~k~GTdial~na~a~viI~egL  240 (694)
T TIGR01591       161 ENADLIVIIGANPAESHPVVASKLMRAKKRNGAKIIVIDPRKTETAKSAHIIADLFIPLKPGTDIALLNAVANVIIEEGL  240 (694)
T ss_pred             HCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHCCCEEEECCCCHHHHHHHHHHHEEECCCC
T ss_conf             32775899756765554368999999985089789997588860232211101106517997089999732002422786


Q ss_pred             --HH----CC-CCCHHHHHHHHCC-CCH----------------HHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf             --43----04-8986788888268-778----------------899987235310235443321047469898989998
Q gi|254780859|r  421 --YE----HL-GNGSEALADLVSG-QHP----------------FFKKLQEATRPLIIVGQGALRASDNVEVMANIAKLV  476 (700)
Q Consensus       421 --~~----~l-~~~~e~l~~~~~g-~~~----------------~~~~l~~a~~~~ii~G~g~~~~~~g~~~~~al~~l~  476 (700)
T Consensus       241 ~Dk~Fi~~R~~W~~F~E~r~~V~~~yTpE~vE~ITgV~~d~Ir~~A~~yA~a~~~Ai~wGlGvTq~~~Gv~tV~~~~nLA  320 (694)
T TIGR01591       241 YDKEFIEKRTDWEGFEEFREIVKGKYTPEYVEKITGVPADLIREIARMYAKAGSAAILWGLGVTQHSQGVETVMALANLA  320 (694)
T ss_pred             CCHHHHHHHCCCCCHHHHHHHHCCCCCHHHCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCEEEHHHHHHHHHHHHHH
T ss_conf             16688975148785378887750478753222125788889999999983589679995550200013556999999999


Q ss_pred             HHHHCCCCCCCCCCCCCCCCCCCCCHHCCCCCC----------------------------CCCCCHHHHHH-----CCC
Q ss_conf             874105853347542467531045210177658----------------------------65236888860-----167
Q gi|254780859|r  477 IDVGGISDSWNGFAVLHTVASRVGALDLGFVPA----------------------------DDTINAMNILD-----KTD  523 (700)
Q Consensus       477 ~~~G~ig~~g~G~~~L~~~~n~~Ga~d~g~~P~----------------------------~~~~~~~~~~~-----~~~  523 (700)
T Consensus       321 llTGN~G~~G~Gv~P~RGQNNVQGacDmG~lp~~lPGY~~~~d~~~~~~~~~~WG~~~L~~~~GL~Ipe~~da~~~G~~k  400 (694)
T TIGR01591       321 LLTGNIGKPGGGVNPLRGQNNVQGACDMGALPEFLPGYRKLSDEEVREKFEKLWGVVKLPAEPGLRIPEMIDAALDGDLK  400 (694)
T ss_pred             HHHCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCEECCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCEE
T ss_conf             99603674776220247755532210147888887786744836899999862783118668897322378998549716


Q ss_pred             EEEECCCCHH----------HCCCCCCEEEHHHHHHHHHHHHCCEEECCCCCCCCCCEEEEECCEEEEECCCCCCCCCCC
Q ss_conf             5998076422----------016654345022116666887455770478620247208820886742044328855574
Q gi|254780859|r  524 IVFLLGADEL----------DFSDKQALTVYIGSHGDRGAQSADVILPGAAYTEKSGLWVNTEGRVQMGMRAIFPPGDAK  593 (700)
Q Consensus       524 ~l~~~g~d~l----------~~~~~~~fvV~~d~~~t~tA~~ADVVLP~a~~~Ek~Gtf~N~EgRvQ~~~~av~p~geak  593 (700)
T Consensus       401 alYI~GEdp~~sDp~~~~V~~aL~~lellVVqD~F~T~TA~yAdvvLPaa~w~EkeGtftN~eRriq~~~Ka~eP~gesk  480 (694)
T TIGR01591       401 ALYIVGEDPVISDPDTKKVRKALEKLELLVVQDIFMTETAKYADVVLPAAAWAEKEGTFTNAERRIQRFFKAVEPKGESK  480 (694)
T ss_pred             EEEEECCCCEEECCCHHHHHHHHHCCCEEEEECCCHHHHHHHCCCCCCCCCCCCCCCEEEECCCEEEEEEEEECCCCCCC
T ss_conf             99983585022379858999897538637970756133773526003442211347627705761777887535674654


Q ss_pred             HHHHHHHHHHHHHCCC---CCCCCHHHHHHHHHHHCCCCCCCCCC-----CCCCCCCCCCCCCC-CCCCCCCCCCC----
Q ss_conf             0799999999980779---96879899999999978111055422-----42211232112334-44446563111----
Q gi|254780859|r  594 EDWEIICALADELKCS---LPFSSLSQLRSHLYSHHPHFMQLDEI-----RPSATDGIYALAKK-VGKMQKRNFVS----  660 (700)
Q Consensus       594 ~dw~Il~~La~~LG~~---~~~~~~~ei~~ei~~~~P~~~~~~~~-----~~~~~~~~~~~~~~-~~~~~~~~~~~----  660 (700)
T Consensus       481 ~DWeI~~~lA~~lG~~gemf~Y~~~~~i~~Ei~~~~p~f~~~~~~~l~~~~~~~wp~~~~~~~~GT~~Ly~d~F~tP~Gk  560 (694)
T TIGR01591       481 PDWEIIQELANALGLDGEMFNYNHPKEIFEEIRELTPLFAGLNYERLEELGSLQWPCNDEDASPGTPLLYKDKFATPDGK  560 (694)
T ss_pred             HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCC
T ss_conf             23899999999728788756778888999999985776668646550575544478888887688840110355589974


Q ss_pred             --------------------------CCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             --------------------------2246312489885238999999998776666888776409
Q gi|254780859|r  661 --------------------------TVENFYLANSIARASATMAQCSLVAQSCEKRIFDSAKELG  700 (700)
Q Consensus       661 --------------------------~~~nfY~td~isr~S~tM~~c~~~~~~~~~~~~~~a~~~~  700 (700)
T Consensus       561 a~F~~~e~~~p~e~~~~~yPliL~TgR~l~hY~~g~mT~R~~~l~~--~~~e~~v~I~~EDA~~lg  624 (694)
T TIGR01591       561 AKFIPLEWVAPIEEPDDEYPLILTTGRVLTHYNVGEMTRRVAGLRR--KVPEPFVEINTEDAEKLG  624 (694)
T ss_pred             EEEEEECCCCCCCCCCCCCCEEEEEEEEEEEEECHHHHCCCHHHHH--HCCCCEEEECHHHHHHCC
T ss_conf             6887632003457888861558980159887405454305547775--278982763158897558