HHsearch alignment for GI: 254780859 and conserved domain: TIGR01941
>TIGR01941 nqrF NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit; InterPro: IPR010205 This entry represents the NqrF subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria.; GO: 0016655 oxidoreductase activity acting on NADH or NADPH quinone or similar compound as acceptor, 0051537 2 iron 2 sulfur cluster binding, 0006814 sodium ion transport, 0009276 1-2nm peptidoglycan-based cell wall, 0016021 integral to membrane.
Probab=97.49 E-value=0.00021 Score=50.84 Aligned_cols=64 Identities=27% Similarity=0.446 Sum_probs=54.9
Q ss_pred EEEEECC---EEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEEECCCC-------------------CCC
Q ss_conf 4999999---999968887588999986895461212799964560004799971798-------------------870
Q gi|254780859|r 5 VKLKVDG---IEIEVPSGFTILQACELAGAEIPRFCFHERLSIAGNCRMCLVEIKGIA-------------------SKP 62 (700)
Q Consensus 5 v~~~Idg---~~v~v~~g~til~a~~~~gi~IP~~Cy~~~l~~~g~CRmClVeve~~~-------------------~k~ 62 (700)
T Consensus 32 ~ti~iNd~~E~~~~v~~G~~LL~~L~~~gif~sSaC-----GGgg~C~QCrv~V~~ggge~LpTe~~~~sk~~~keGwRL 106 (425)
T TIGR01941 32 VTIKINDDEEKSITVPAGGKLLNTLASNGIFISSAC-----GGGGTCGQCRVRVVEGGGEILPTELSHFSKREAKEGWRL 106 (425)
T ss_pred EEEEECCCCCCEEECCCCHHHHHHHHHCCEEECCCC-----CCCCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHCCCEE
T ss_conf 589861874435771221479999875782312788-----878846631589963788768775421331445217702
Q ss_pred CCCCCCCCCCCCC
Q ss_conf 2002656645663
Q gi|254780859|r 63 QASCAMNVSDLRA 75 (700)
Q Consensus 63 ~~sC~t~v~~gm~ 75 (700)
T Consensus 107 --sCQ~~Vk~Dm~ 117 (425)
T TIGR01941 107 --SCQVKVKQDMS 117 (425)
T ss_pred --ECCCCCCCCCE
T ss_conf --11322344877