HHsearch alignment for GI: 254780859 and conserved domain: TIGR01945
>TIGR01945 rnfC electron transport complex, RnfABCDGE type, C subunit; InterPro: IPR010208 The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation . A closely related complex in Escherichia coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized . This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase (IPR003667 from INTERPRO), but is distinct. This entry describes the C subunit.; GO: 0051539 4 iron 4 sulfur cluster binding, 0006118 electron transport, 0016020 membrane.
Probab=90.70 E-value=0.048 Score=33.80 Aligned_cols=18 Identities=17% Similarity=0.209 Sum_probs=7.5
Q ss_pred HHHHHHHHCCC-----CEEECCC
Q ss_conf 57789997599-----7066168
Q gi|254780859|r 395 ARIRKRWRRGN-----FPIAVIG 412 (700)
Q Consensus 395 ~rirka~~~g~-----~~I~vi~ 412 (700)
T Consensus 215 ~al~~a~~~~~~Pt~~i~v~vlp 237 (444)
T TIGR01945 215 AALKKALEGYPKPTKNIKVRVLP 237 (444)
T ss_pred HHHHHHHHCCCCCCCCEEEEEEE
T ss_conf 99999860278887754788841