HHsearch alignment for GI: 254780859 and conserved domain: TIGR01945

>TIGR01945 rnfC electron transport complex, RnfABCDGE type, C subunit; InterPro: IPR010208 The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation . A closely related complex in Escherichia coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized . This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase (IPR003667 from INTERPRO), but is distinct. This entry describes the C subunit.; GO: 0051539 4 iron 4 sulfur cluster binding, 0006118 electron transport, 0016020 membrane.
Probab=90.70  E-value=0.048  Score=33.80  Aligned_cols=18  Identities=17%  Similarity=0.209  Sum_probs=7.5

Q ss_pred             HHHHHHHHCCC-----CEEECCC
Q ss_conf             57789997599-----7066168
Q gi|254780859|r  395 ARIRKRWRRGN-----FPIAVIG  412 (700)
Q Consensus       395 ~rirka~~~g~-----~~I~vi~  412 (700)
T Consensus       215 ~al~~a~~~~~~Pt~~i~v~vlp  237 (444)
T TIGR01945       215 AALKKALEGYPKPTKNIKVRVLP  237 (444)
T ss_pred             HHHHHHHHCCCCCCCCEEEEEEE
T ss_conf             99999860278887754788841