HHsearch alignment for GI: 254780859 and conserved domain: TIGR02166
>TIGR02166 dmsA_ynfE anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family; InterPro: IPR011888 Many bacterial species are capable of anaerobic growth by using dimethylsulphoxide (DMSO) as the terminal electron acceptor, with DMSO reductase as the terminal elctron transfer enzyme. In Escherichia coli and many other Gram-negative bacteria DMSO reductase is a membrane-bound enzyme composed of three subunits; a catalytic molybdenum-containing subunit (DmsA), an electron transfer subunit containing a [4Fe-4S] cluster (DmsB), and a hydrophobic membrane-spanning anchor subunit which attaches the enzyme to the cytoplasmic membrane (DmsC) , . It is generally thought now that DmsAB faces the periplasm, contradicting previous results suggesting a cytoplasmic location. The N-terminal region of DmsA contains a "twin-arginine" signal sequence, suggesting export to the periplasm occurs via the TAT secretion pathway. This entry represents known and predicted bacterial DmsA polypeptides. Several species contain one or more paralogs of DmsA. In E. coli, the two paralogs of DmsA, YnfE and YnfF, are encoded within the ynfEFGHI operon . YnfE and YnfF cannot form a functional complex with DmsBC, but YnfFGH can restore growth on DMSO when DmABC is deleted. The function of YnfE is not known and it appears to prevent formation of the YnfFGH complex if present.; GO: 0009389 dimethyl sulfoxide reductase activity, 0030151 molybdenum ion binding, 0051539 4 iron 4 sulfur cluster binding.
Probab=100.00 E-value=0 Score=389.78 Aligned_cols=416 Identities=19% Similarity=0.237 Sum_probs=290.2
Q ss_pred CCCCEEEEEECC-CCCCCCCEEEEECCCCEEEEEECCCCCCC-------CCCEECCCCCCC-CCHHHHCCCCHHHEECC-
Q ss_conf 443023522012-11688643667515999988524788877-------774113554221-00000000110110022-
Q gi|254780859|r 223 RSWELTKTDSID-VMDALGSAIRIDARGCEVMRILPRINESI-------NEEWISDKTRFI-WDGLKVQRLDCPYARIN- 292 (700)
Q Consensus 223 Rpwel~~~~SvC-~~C~~GC~i~v~v~~g~i~rv~~~~~~~v-------N~g~lC~KGRf~-~d~~~~dRL~~PliR~~- 292 (700)
T Consensus 41 ~~~E-~~~wsaC~vNCGSrCplr~hV~dG~i~~ieTrPDn~~dD~~~g~HQvRAC~RGRS~R~rvY~PDRLkYPmkRVGK 119 (849)
T TIGR02166 41 RPDE-KVVWSACTVNCGSRCPLRVHVKDGEITRIETRPDNTGDDEYGGNHQVRACLRGRSLRRRVYNPDRLKYPMKRVGK 119 (849)
T ss_pred CCCC-CEEEEEEEEECCCCCCCEEEEECCEEEEEECCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHCCC
T ss_conf 6665-379876532068888635787657689841586533243358865561034654213200487534574000145
Q ss_pred ---CCEEECCHHHHHHHHHHHHCCCCCCEE----------EEECCCCCC--HHHHHHHHHHHHCCCCCEECCCC------
Q ss_conf ---220232414566888752013445314----------785043232--35554788986368772420233------
Q gi|254780859|r 293 ---GRLKPVSWDYALKAIKSAVLSSDVKLG----------AVVGDLSSV--EEIYALKLLMQSLGCENFDCRQN------ 351 (700)
Q Consensus 293 ---g~~~~iSWdeAl~~ia~~L~~~~~~~g----------~~~g~~~t~--Ee~y~~k~l~~~lGt~nid~~~~------ 351 (700)
T Consensus 120 RGEGKF~RISWdEA~~~IA~~Lk~~~~~YGN~aiY~~YGTG~~GG~~~~~~~~~~~~~Rllnl~GG-yL~~Yg~YS~Aqi 198 (849)
T TIGR02166 120 RGEGKFERISWDEATDTIADNLKRIIEKYGNEAIYVNYGTGTLGGTMSRSKPPATLVARLLNLCGG-YLNQYGSYSTAQI 198 (849)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCEEEECCCCCCCHHHHHHHHCCC-CHHHCCCCCHHHH
T ss_conf 346556655779999999987788887518824786300000112231478853189999974276-0012477057889
Q ss_pred CCCCCHHHHCCCCCCCCCHHHHHCCCEEEEECCCCCCCC---CCHHHHHHHHHHC--CCCEEECCCCCHHHH----HHHH
Q ss_conf 444664340125467787877401857999738532257---3102577899975--997066168501223----3443
Q gi|254780859|r 352 GEYLDPSYGRASYIFNPTIQGIEEADAMLIIGSNPRLEA---AVLNARIRKRWRR--GNFPIAVIGDVGELR----YKYE 422 (700)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~i~die~ad~illiG~Np~~~~---Pvl~~rirka~~~--g~~~I~vi~~~~~l~----~~~~ 422 (700)
T Consensus 199 ~~~~~y~Y--G~~~~g~s~~~i~~skLvv~fG~NP~ETRmSGGG~~y~~~~A~~~ns~a~~I~iDPRYtDt~ag~~deWi 276 (849)
T TIGR02166 199 NEALPYTY--GASADGSSLDDIENSKLVVMFGNNPAETRMSGGGQTYYFLQALEKNSNAKVIVIDPRYTDTVAGREDEWI 276 (849)
T ss_pred HHHHHHCC--CCCCCCCCHHHHHCCCEEEEECCCCHHEEECCCCCHHHHHHHHHHHCCCEEEEECCCCCHHHCCCCCCCC
T ss_conf 97765336--5013678678751387689815781020322786045689999752386189975888720323014786
Q ss_pred CCCCCHH-----------------------H-------------------------------------------------
Q ss_conf 0489867-----------------------8-------------------------------------------------
Q gi|254780859|r 423 HLGNGSE-----------------------A------------------------------------------------- 430 (700)
Q Consensus 423 ~l~~~~e-----------------------~------------------------------------------------- 430 (700)
T Consensus 277 PI~PGTDAALv~A~ayVlI~EGwvnl~D~~FLd~YCVGfD~~tLPklvaefta~saP~ktqylPyidvN~sY~~YilG~G 356 (849)
T TIGR02166 277 PIRPGTDAALVAAIAYVLISEGWVNLHDKAFLDRYCVGFDEKTLPKLVAEFTAASAPKKTQYLPYIDVNGSYKDYILGEG 356 (849)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHHCCCCEECCCCCHHHHCCCCC
T ss_conf 78877258999998887551773253267778641456785367899987403678112122541200544333201466
Q ss_pred -----------HHHHHCCCC-----HHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf -----------888826877-----8899987235310235443321047469898989998874105853347542467
Q gi|254780859|r 431 -----------LADLVSGQH-----PFFKKLQEATRPLIIVGQGALRASDNVEVMANIAKLVIDVGGISDSWNGFAVLHT 494 (700)
Q Consensus 431 -----------l~~~~~g~~-----~~~~~l~~a~~~~ii~G~g~~~~~~g~~~~~al~~l~~~~G~ig~~g~G~~~L~~ 494 (700)
T Consensus 357 kf~D~~~KTPeWA~~ITgipa~~I~~LAreig~aKpa~I~QGWG~QR~aNGE~a~Rai~mL~~lTGnvG~~Gg~~GA~eg 436 (849)
T TIGR02166 357 KFADGTEKTPEWASKITGIPADTIIKLAREIGNAKPAFISQGWGPQRHANGEQAARAIAMLALLTGNVGIKGGNNGAREG 436 (849)
T ss_pred CCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 25788857857874625888789999998741235278642886431146678999999988761543667766454575
Q ss_pred CCCC--CC--------------------CHHCC--CCCCCCCCCHHHHHH-----CCCEEEECCCCHHH-----------
Q ss_conf 5310--45--------------------21017--765865236888860-----16759980764220-----------
Q gi|254780859|r 495 VASR--VG--------------------ALDLG--FVPADDTINAMNILD-----KTDIVFLLGADELD----------- 534 (700)
Q Consensus 495 ~~n~--~G--------------------a~d~g--~~P~~~~~~~~~~~~-----~~~~l~~~g~d~l~----------- 534 (700)
T Consensus 437 ~~~~~~~~~~~~~dNPvk~sIS~F~WtdAI~~G~emTa~~dGvrg~~KLd~PlGa~IK~~wn~agN~LiNQHSD~N~T~~ 516 (849)
T TIGR02166 437 SYSLPFARMPELPDNPVKTSISCFLWTDAIERGTEMTAIKDGVRGKDKLDSPLGANIKFLWNYAGNCLINQHSDINRTAK 516 (849)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCHHCCCCCCHHHCCCCCCCHHEEEECCCCEEEECCCCCCCHHH
T ss_conf 20101255788888876443664427889725665671234787705525777874301012115717833854212121
Q ss_pred CC---CCCCEEEHHHHHHHHHHHHCCEEECCCCCCCCCCE----EEE-ECCEEEEECCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 16---65434502211666688745577047862024720----882-08867420443288555740799999999980
Q gi|254780859|r 535 FS---DKQALTVYIGSHGDRGAQSADVILPGAAYTEKSGL----WVN-TEGRVQMGMRAIFPPGDAKEDWEIICALADEL 606 (700)
Q Consensus 535 ~~---~~~~fvV~~d~~~t~tA~~ADVVLP~a~~~Ek~Gt----f~N-~EgRvQ~~~~av~p~geak~dw~Il~~La~~L 606 (700)
T Consensus 517 IL~De~kCE~IVv~d~~MT~SAkYADilLPD~t~~E~~D~~~~~~a~g~~~Yli~~~~~i~P~fEck~~Y~~~~e~A~rL 596 (849)
T TIGR02166 517 ILEDESKCELIVVIDNHMTSSAKYADILLPDTTTLEQEDLIEDSYASGNMSYLIFMQKAIEPLFECKPIYDMLSEVAKRL 596 (849)
T ss_pred HHCCCCEEEEEEEECCCCCCHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCHHEEEHHHCCCCCCCCCHHHHHHHHHHHC
T ss_conf 20574402256652452585033443210131067667532122234555341010100375654166689999999870
Q ss_pred C--CCCCCC---CH----HHHHHHHHH--HCCCCC-CCCCCCCCCCCC
Q ss_conf 7--799687---98----999999999--781110-554224221123
Q gi|254780859|r 607 K--CSLPFS---SL----SQLRSHLYS--HHPHFM-QLDEIRPSATDG 642 (700)
Q Consensus 607 G--~~~~~~---~~----~ei~~ei~~--~~P~~~-~~~~~~~~~~~~ 642 (700)
T Consensus 597 G~~~~~~FTEGrtq~~Wle~lY~qtr~~~~~P~LPn~f~e~~k~G~~~ 644 (849)
T TIGR02166 597 GGEVEAEFTEGRTQEEWLEHLYAQTRAADKDPALPNSFAELRKQGIYK 644 (849)
T ss_pred CCCHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCEE
T ss_conf 851244336880279999999999886157888778879995177310