HHsearch alignment for GI: 254780859 and conserved domain: TIGR02700

>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family; InterPro: IPR014073 This entry describes one of two paralogous families of archaeal flavoprotein. The other, described by IPR014072 from INTERPRO and typified by the partially characterised AF1518 of ArchaArchaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown..

Probab=91.28  E-value=0.038  Score=34.48  Aligned_cols=70  Identities=21%  Similarity=0.348  Sum_probs=38.1

Q ss_pred             CCHHHCCCCCHHHH--HHHHCCCCCCEEEECCCCCCEEEECCCCCCCCCCCCCEEECCCCCCCCCC-CCCCCCCCCCEEE
Q ss_conf             06432901002364--54320687400333066641266205875556546622201212101223-3233344430235
Q gi|254780859|r  153 TVMNRCIHCTRCVR--FITEVAGVSELGLVGRGENAEITTYLEQSLTSEMQGNIIDLCPVGALTSK-PFAFTGRSWELTK  229 (700)
Q Consensus       153 ~d~~rCI~C~RCVR--~c~Ev~g~~~lg~~~RG~~~~i~~~~~~~~~~e~~Gncvd~CPvGALt~k-~~~~~~Rpwel~~  229 (700)
T Consensus       145 idrk~Ck~C~~C~~re~CP~~AI~~~dg~~d-----~I-----~LlkC~GCG~Cke~CPynAI~gG~e~e~rVR~vDaeN  214 (237)
T TIGR02700       145 IDRKKCKLCEKCVDREACPREAISKKDGVVD-----EI-----RLLKCVGCGKCKEVCPYNAIKGGKEVEMRVRKVDAEN  214 (237)
T ss_pred             HHHHHCCCCCCCCCCCCCCCHHHHHCCCCCC-----EE-----EEEECCCCCCCCCCCCHHHHCCCCEEEEEEEEECHHH
T ss_conf             6687412478898734577113341078101-----11-----0010247887533585445017801699885206477


Q ss_pred             EEE
Q ss_conf             220
Q gi|254780859|r  230 TDS  232 (700)
Q Consensus       230 ~~S  232 (700)
T Consensus       215 vrk  217 (237)
T TIGR02700       215 VRK  217 (237)
T ss_pred             HHH
T ss_conf             898