HHsearch alignment for GI: 254780859 and conserved domain: TIGR03048
>TIGR03048 PS_I_psaC photosystem I iron-sulfur protein PsaC. Members of this family are PsaC, an essential component of photosystem I (PS-I) reaction center in Cyanobacteria and chloroplasts. This small protein, about 80 amino acids in length, contains two copies of the ferredoxin-like 4Fe-4S binding site (pfam00037) and therefore eight conserved Cys residues. This protein is also called photosystem I subunit VII.
Probab=97.55 E-value=3.3e-05 Score=56.63 Aligned_cols=62 Identities=23% Similarity=0.375 Sum_probs=47.3
Q ss_pred CHHHCCCCCHHHHHHHHCCCCCCEEEECC-CCCCEEEECCCCCCCCCCCCCEEECCCCCCCCCCCCC
Q ss_conf 64329010023645432068740033306-6641266205875556546622201212101223323
Q gi|254780859|r 154 VMNRCIHCTRCVRFITEVAGVSELGLVGR-GENAEITTYLEQSLTSEMQGNIIDLCPVGALTSKPFA 219 (700)
Q Consensus 154 d~~rCI~C~RCVR~c~Ev~g~~~lg~~~R-G~~~~i~~~~~~~~~~e~~Gncvd~CPvGALt~k~~~ 219 (700)
T Consensus 6 ~~D~CIgC~~CvrvCP----t~vieMVp~dg~~~~q~~~~~RtedCIGC~~CE~aCPtdaLsir~y~ 68 (80)
T TIGR03048 6 IYDTCIGCTQCVRACP----TDVLEMVPWDGCKAGQIASAPRTEDCVGCKRCESACPTDFLSVRVYL 68 (80)
T ss_pred EECCCCCCHHHHHHCC----CCCEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCEEEEEC
T ss_conf 4040668046686588----45145224666544645578861005562134430898731358841