HHsearch alignment for GI: 254780859 and conserved domain: TIGR03379
>TIGR03379 glycerol3P_GlpC glycerol-3-phosphate dehydrogenase, anaerobic, C subunit. Members of this protein family are the membrane-anchoring, non-catalytic C subunit, product of the glpC gene, of a three-subunit, FAD-dependent, anaerobic glycerol-3-phosphate dehydrogenase. GlpC lasks classical hydrophobic transmembrane helices; Cole, et al suggest interaction with the membrane may involve amphipathic helices. GlcC has conserved Cys-containing motifs suggestive of iron-sulfur binding. This complex is found mostly in Escherichia coli and closely related species.
Probab=96.22 E-value=0.00088 Score=46.33 Aligned_cols=60 Identities=20% Similarity=0.376 Sum_probs=36.7
Q ss_pred CCHHHCCCCCHHHHHHHHCC------CCCCEEEECCCCCCEEEE--CCCCCC-CCCCCCCEEECCCCCCCC
Q ss_conf 06432901002364543206------874003330666412662--058755-565466222012121012
Q gi|254780859|r 153 TVMNRCIHCTRCVRFITEVA------GVSELGLVGRGENAEITT--YLEQSL-TSEMQGNIIDLCPVGALT 214 (700)
Q Consensus 153 ~d~~rCI~C~RCVR~c~Ev~------g~~~lg~~~RG~~~~i~~--~~~~~~-~~e~~Gncvd~CPvGALt 214 (700)
T Consensus 2 ~~~d~Ci~CG~C~~~CP~~~~~~~~~g~~~--~~~~g~~~~l~~~~~~~~~l~~C~~C~~C~~~CP~gV~~ 70 (397)
T TIGR03379 2 TSFESCIKCTVCTVYCPVAKANPLYPGPKQ--AGPDGERLRLKSAELYDEALKYCTNCKRCEVACPSDVKI 70 (397)
T ss_pred CHHHHCCCCCCCCCCCCCCCCCCCCCCHHH--CCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCH
T ss_conf 031227588988373868545788887254--084467665036443415616382768836538799987