HHsearch alignment for GI: 254780859 and conserved domain: cd02750
>cd02750 MopB_Nitrate-R-NarG-like Respiratory nitrate reductase A (NarGHI), alpha chain (NarG) and related proteins. Under anaerobic conditions in the presence of nitrate, E. coli synthesizes the cytoplasmic membrane-bound quinol-nitrate oxidoreductase (NarGHI), which reduces nitrate to nitrite and forms part of a redox loop generating a proton-motive force. Found in prokaryotes and some archaea, NarGHI usually functions as a heterotrimer. The alpha chain contains the molybdenum cofactor-containing Mo-bisMGD catalytic subunit. Members of the MopB_Nitrate-R-NarG-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=100.00 E-value=0 Score=533.64 Aligned_cols=377 Identities=19% Similarity=0.163 Sum_probs=304.2
Q ss_pred EEEEECCCC-CCCCCEEEEECCCCEEEEEECCCCCCCCCCE-------ECCCCCCCCCHH-HHCCCCHHHEEC----CCC
Q ss_conf 352201211-6886436675159999885247888777741-------135542210000-000011011002----222
Q gi|254780859|r 228 TKTDSIDVM-DALGSAIRIDARGCEVMRILPRINESINEEW-------ISDKTRFIWDGL-KVQRLDCPYARI----NGR 294 (700)
Q Consensus 228 ~~~~SvC~~-C~~GC~i~v~v~~g~i~rv~~~~~~~vN~g~-------lC~KGRf~~d~~-~~dRL~~PliR~----~g~ 294 (700)
T Consensus 2 k~v~s~C~~~C~~~C~i~v~V~dG~vv~v~~~~~~P~~~~~~p~~~gr~C~KG~~~~~~~y~pdRl~~PL~R~g~RG~g~ 81 (461)
T cd02750 2 KVVRSTHGVNCTGSCSWNVYVKNGIVTREEQATDYPETPPDLPDYNPRGCQRGASFSWYLYSPDRVKYPLKRVGARGEGK 81 (461)
T ss_pred CEEECCCCCCCCCCCCEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHCCCEEECCCCCCCC
T ss_conf 65941589998578986999999999999757878888887766677868673442876459644039866367788897
Q ss_pred EEECCHHHHHHHHHHHHCCCCCCEEE-----EECCCCCCHHHH-HHHHHHHHCCCCCEECCCCCCCCCHHHH--CCCCCC
Q ss_conf 02324145668887520134453147-----850432323555-4788986368772420233444664340--125467
Q gi|254780859|r 295 LKPVSWDYALKAIKSAVLSSDVKLGA-----VVGDLSSVEEIY-ALKLLMQSLGCENFDCRQNGEYLDPSYG--RASYIF 366 (700)
Q Consensus 295 ~~~iSWdeAl~~ia~~L~~~~~~~g~-----~~g~~~t~Ee~y-~~k~l~~~lGt~nid~~~~~~~~~~~~~--~~~~~~ 366 (700)
T Consensus 82 f~~iSWDEAld~IA~kl~~i~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~G~~~~ 161 (461)
T cd02750 82 WKRISWDEALELIADAIIDTIKKYGPDRVIGFSPIPAMSMVSYAAGSRFASLIGGVSLSFYDWYGDLPPGSPQTWGEQTD 161 (461)
T ss_pred EEEECHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHEECCCC
T ss_conf 78975999999999999999996199649996478640488899999999984897678865767488999988327888
Q ss_pred CCCHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHCCCCEEECCCCCHHHHH---HHHCCCCCHH--------------
Q ss_conf 78787740185799973853225731025778999759970661685012233---4430489867--------------
Q gi|254780859|r 367 NPTIQGIEEADAMLIIGSNPRLEAAVLNARIRKRWRRGNFPIAVIGDVGELRY---KYEHLGNGSE-------------- 429 (700)
Q Consensus 367 ~~~i~die~ad~illiG~Np~~~~Pvl~~rirka~~~g~~~I~vi~~~~~l~~---~~~~l~~~~e-------------- 429 (700)
T Consensus 162 ~~~~~D~~~a~~il~~G~N~~~~~~~~~~~i~~ar~~GaklivIDPr~t~ta~~AD~~l~irPGTD~aL~la~~~~ii~e 241 (461)
T cd02750 162 VPESADWYNADYIIMWGSNVPVTRTPDAHFLTEARYNGAKVVVVSPDYSPSAKHADLWVPIKPGTDAALALAMAHVIIKE 241 (461)
T ss_pred CCCHHHHHCCCEEEEECCCHHHHCCHHHHHHHHHHHCCCEEEEECCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 89877884397899956787883645469999999779979992699987899727046879996199999999999876
Q ss_pred ------HHHHHH---------------CCC-----CHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf ------888882---------------687-----788999872353102354433210474698989899988741058
Q gi|254780859|r 430 ------ALADLV---------------SGQ-----HPFFKKLQEATRPLIIVGQGALRASDNVEVMANIAKLVIDVGGIS 483 (700)
Q Consensus 430 ------~l~~~~---------------~g~-----~~~~~~l~~a~~~~ii~G~g~~~~~~g~~~~~al~~l~~~~G~ig 483 (700)
T Consensus 242 ~~~D~~fv~~~t~~~~~~ytpe~aa~itGv~~~~I~~lA~~~a~~~~~~i~~g~G~~~~~~g~~~~~a~~~L~~ltGnig 321 (461)
T cd02750 242 KLYDEDYLKEYTDLPFLVYTPAWQEAITGVPRETVIRLAREFATNGRSMIIVGAGINHWYHGDLCYRALILLLALTGNEG 321 (461)
T ss_pred CCCCHHHHHHHHCCHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECHHHCCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf 88189999987385332199999998879599999999999986799389817253411228999999999999855899
Q ss_pred CCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCHHHHHHCCCEEEECCCCHHH------------CCCCCCEEEHHHHHHHH
Q ss_conf 533475424675310452101776586523688886016759980764220------------16654345022116666
Q gi|254780859|r 484 DSWNGFAVLHTVASRVGALDLGFVPADDTINAMNILDKTDIVFLLGADELD------------FSDKQALTVYIGSHGDR 551 (700)
Q Consensus 484 ~~g~G~~~L~~~~n~~Ga~d~g~~P~~~~~~~~~~~~~~~~l~~~g~d~l~------------~~~~~~fvV~~d~~~t~ 551 (700)
T Consensus 322 ~~Ggg~~~~~--------------------------G~~k~~~~~~~nP~~~~~~~~~~~~~~~~~kldf~Vv~D~~~te 375 (461)
T cd02750 322 KNGGGWAHYV--------------------------GQPRVLFVWRGNLFGSSGKGHEYFEDAPEGKLDLIVDLDFRMDS 375 (461)
T ss_pred CCCCCCCCCC--------------------------CCCEEEEEECCCCCCCCCCHHHHHHHHHCCCCCEEEEECCCCCC
T ss_conf 9998261026--------------------------87508999576812358789999988664799989996278884
Q ss_pred HHHHCCEEECCCCCCCC-CCEEEEECCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCC-----CCCCCHHHHHHHHHHH
Q ss_conf 88745577047862024-72088208867420443288555740799999999980779-----9687989999999997
Q gi|254780859|r 552 GAQSADVILPGAAYTEK-SGLWVNTEGRVQMGMRAIFPPGDAKEDWEIICALADELKCS-----LPFSSLSQLRSHLYSH 625 (700)
Q Consensus 552 tA~~ADVVLP~a~~~Ek-~Gtf~N~EgRvQ~~~~av~p~geak~dw~Il~~La~~LG~~-----~~~~~~~ei~~ei~~~ 625 (700)
T Consensus 376 TA~~ADvVLPa~t~~Er~d~~~~~~~~~v~~~~~av~P~gear~D~~I~~~LA~rlg~~~~~~~~~~~~~~~~~~e~~~~ 455 (461)
T cd02750 376 TALYSDIVLPAATWYEKHDLSTTDMHPFIHPFSPAVDPLWEAKSDWEIFKALAKKVPWRTLTGRQQFYLDHDWFLELGET 455 (461)
T ss_pred HHHHCCEEECCCCCCCCCCEEEECCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 27648899758987713880553698669984146589744666999999999856999887740228889999999986
Q ss_pred CCCCC
Q ss_conf 81110
Q gi|254780859|r 626 HPHFM 630 (700)
Q Consensus 626 ~P~~~ 630 (700)
T Consensus 456 ~p~~~ 460 (461)
T cd02750 456 LPTYK 460 (461)
T ss_pred CCCCC
T ss_conf 78878