HHsearch alignment for GI: 254780859 and conserved domain: cd02754
>cd02754 MopB_Nitrate-R-NapA-like Nitrate reductases, NapA (Nitrate-R-NapA), NasA, and NarB catalyze the reduction of nitrate to nitrite. Monomeric Nas is located in the cytoplasm and participates in nitrogen assimilation. Dimeric Nap is located in the periplasm and is coupled to quinol oxidation via a membrane-anchored tetraheme cytochrome. Members of the MopB_Nitrate-R-NapA CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=100.00 E-value=0 Score=616.14 Aligned_cols=404 Identities=22% Similarity=0.281 Sum_probs=331.6
Q ss_pred EECCCCCCCCCEEEEECCCCEEEEEECCCCCCCCCCEECCCCCCCCCHHH-HCCCCHHHEECCC-CEEECCHHHHHHHHH
Q ss_conf 20121168864366751599998852478887777411355422100000-0001101100222-202324145668887
Q gi|254780859|r 231 DSIDVMDALGSAIRIDARGCEVMRILPRINESINEEWISDKTRFIWDGLK-VQRLDCPYARING-RLKPVSWDYALKAIK 308 (700)
Q Consensus 231 ~SvC~~C~~GC~i~v~v~~g~i~rv~~~~~~~vN~g~lC~KGRf~~d~~~-~dRL~~PliR~~g-~~~~iSWdeAl~~ia 308 (700)
T Consensus 1 kT~C~~C~~~C~i~v~v~dg~v~rv~g~~~~p~n~g~lC~kG~~~~~~~~~pdRl~~Pm~Rr~~g~~~~iSWdeAl~~iA 80 (565)
T cd02754 1 KTTCPYCGVGCGVEIGVKDGKVVAVRGDPEHPVNRGRLCIKGLNLHKTLNGPERLTRPLLRRNGGELVPVSWDEALDLIA 80 (565)
T ss_pred CCCCCCCCCCCCEEEEEECCEEEEEEECCCCCCCCCEECHHHHHHHHHHCCCCCCCCCCEECCCCCEEECCHHHHHHHHH
T ss_conf 96278852689979999999999998089999878686887763088757995304782888999779904999999999
Q ss_pred HHHCCCCCCEE-----EEECCCCCCHHHHHHHHHHH-HCCCCCEECCCCCCCCCHHHHC----CCCCCCCCHHHHHCCCE
Q ss_conf 52013445314-----78504323235554788986-3687724202334446643401----25467787877401857
Q gi|254780859|r 309 SAVLSSDVKLG-----AVVGDLSSVEEIYALKLLMQ-SLGCENFDCRQNGEYLDPSYGR----ASYIFNPTIQGIEEADA 378 (700)
Q Consensus 309 ~~L~~~~~~~g-----~~~g~~~t~Ee~y~~k~l~~-~lGt~nid~~~~~~~~~~~~~~----~~~~~~~~i~die~ad~ 378 (700)
T Consensus 81 ~kl~~i~~~~Gp~si~~~~sg~~~~e~~~~~~~l~~~~~gt~n~d~~~~~c~~~~~~~~~~~~G~~~~~~~~~D~~~ad~ 160 (565)
T cd02754 81 ERFKAIQAEYGPDSVAFYGSGQLLTEEYYAANKLAKGGLGTNNIDTNSRLCMASAVAGYKRSFGADGPPGSYDDIEHADC 160 (565)
T ss_pred HHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHCCE
T ss_conf 99999999729985999906863169999999999973799875898643247788999986078999889888964999
Q ss_pred EEEECCCCCCCCCCHHHHHHHHHHC--CCCEEECCCCCHHHHHH---HHCCCC---------------------------
Q ss_conf 9997385322573102577899975--99706616850122334---430489---------------------------
Q gi|254780859|r 379 MLIIGSNPRLEAAVLNARIRKRWRR--GNFPIAVIGDVGELRYK---YEHLGN--------------------------- 426 (700)
Q Consensus 379 illiG~Np~~~~Pvl~~rirka~~~--g~~~I~vi~~~~~l~~~---~~~l~~--------------------------- 426 (700)
T Consensus 161 il~~G~N~~~~~p~~~~~i~~a~~~~~GaklvvidPr~t~ta~~Ad~~l~irPGtD~aL~la~~~~ii~~~~~D~~fv~~ 240 (565)
T cd02754 161 FFLIGSNMAECHPILFRRLLDRKKANPGAKIIVVDPRRTRTADIADLHLPIRPGTDLALLNGLLHVLIEEGLIDRDFIDA 240 (565)
T ss_pred EEEECCCHHHHCHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHCCCCCHHHHHCCCCEEEEECCCCCHHHHHH
T ss_conf 99988883686779999999999856998899956887818998664500489932767452515842056514234664
Q ss_pred ---CHHHHHHHHCCCC----------------HHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf ---8678888826877----------------889998723531023544332104746989898999887410585334
Q gi|254780859|r 427 ---GSEALADLVSGQH----------------PFFKKLQEATRPLIIVGQGALRASDNVEVMANIAKLVIDVGGISDSWN 487 (700)
Q Consensus 427 ---~~e~l~~~~~g~~----------------~~~~~l~~a~~~~ii~G~g~~~~~~g~~~~~al~~l~~~~G~ig~~g~ 487 (700)
T Consensus 241 ~t~gfe~~~~~v~~~tpe~aa~itGv~~~~I~~lA~~~a~~~~~~i~~g~g~~~~~~g~~~~~ai~~L~~ltG~ig~~G~ 320 (565)
T cd02754 241 HTEGFEELKAFVADYTPEKVAEITGVPEADIREAARLFGEARKVMSLWTMGVNQSTQGTAANNAIINLHLATGKIGRPGS 320 (565)
T ss_pred CCCCHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 14426777777632888776675298889999999998717771899730231303799999999999998577888886
Q ss_pred CCCCCCCCCCCCCCHHCCCCCC------------------------------CCCCCHHHHH-----HCCCEEEECCCCH
Q ss_conf 7542467531045210177658------------------------------6523688886-----0167599807642
Q gi|254780859|r 488 GFAVLHTVASRVGALDLGFVPA------------------------------DDTINAMNIL-----DKTDIVFLLGADE 532 (700)
Q Consensus 488 G~~~L~~~~n~~Ga~d~g~~P~------------------------------~~~~~~~~~~-----~~~~~l~~~g~d~ 532 (700)
T Consensus 321 g~~~l~g~~n~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~g~~~~~~~~~~~~g~ik~l~~~g~Np 400 (565)
T cd02754 321 GPFSLTGQPNAMGGREVGGLANLLPGHRSVNNPEHRAEVAKFWGVPEGTIPPKPGLHAVEMFEAIEDGEIKALWVMCTNP 400 (565)
T ss_pred CCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHCCCCCCCCHHHHHHHHHCCCCEEEEEECCCC
T ss_conf 52534676665521102656666875445677788999999858980222777675699999887679962999917880
Q ss_pred HH----------CCCCCCEEEHHHHHH-HHHHHHCCEEECCCCCCCCCCEEEEECCEEEEECCCCCCCCCCCHHHHHHHH
Q ss_conf 20----------166543450221166-6688745577047862024720882088674204432885557407999999
Q gi|254780859|r 533 LD----------FSDKQALTVYIGSHG-DRGAQSADVILPGAAYTEKSGLWVNTEGRVQMGMRAIFPPGDAKEDWEIICA 601 (700)
Q Consensus 533 l~----------~~~~~~fvV~~d~~~-t~tA~~ADVVLP~a~~~Ek~Gtf~N~EgRvQ~~~~av~p~geak~dw~Il~~ 601 (700)
T Consensus 401 ~~~~pd~~~~~~al~~~dfvVv~d~f~~t~Ta~~ADiVLPaat~~E~~g~~~n~e~~v~~~~~~v~P~gear~d~~I~~~ 480 (565)
T cd02754 401 AVSLPNANRVREALERLEFVVVQDAFADTETAEYADLVLPAASWGEKEGTMTNSERRVSLLRAAVEPPGEARPDWWILAD 480 (565)
T ss_pred HHCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEEECCCCCCCCCCEEECCCCEEEEECCCCCCCCCCCHHHHHHHH
T ss_conf 20385989999985279969998564698722029889578873534770775786599756425997336709999999
Q ss_pred HHHHHCCC--CCCCCHHHHHHHHHHHCCC----CCCCCC
Q ss_conf 99980779--9687989999999997811----105542
Q gi|254780859|r 602 LADELKCS--LPFSSLSQLRSHLYSHHPH----FMQLDE 634 (700)
Q Consensus 602 La~~LG~~--~~~~~~~ei~~ei~~~~P~----~~~~~~ 634 (700)
T Consensus 481 LA~rlG~~~~f~~~~~e~~~~e~~~~~~~~~~~~~g~t~ 519 (565)
T cd02754 481 VARRLGFGELFPYTSPEEVFEEYRRLSRGRGADLSGLSY 519 (565)
T ss_pred HHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCH
T ss_conf 999848986889989999999999856787888789999