HHsearch alignment for GI: 254780859 and conserved domain: cd02772
>cd02772 MopB_NDH-1_NuoG2 MopB_NDH-1_NuoG2: The second domain of the NuoG subunit of the NADH-quinone oxidoreductase/NADH dehydrogenase-1 (NDH-1), found in beta- and gammaproteobacteria. The NDH-1 is the first energy-transducting complex in the respiratory chain and functions as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. In Escherichia coli NDH-1, the largest subunit is encoded by the nuoG gene, and is part of the 14 distinct subunits constituting the functional enzyme. The NuoG subunit is made of two domains: the first contains three binding sites for FeS clusters (the fer2 domain), the second domain (this CD), is of unknown function or, as postulated, has lost an ancestral formate dehydrogenase activity that became redundant during the evolution of the complex I enzyme. Although only vestigial sequence evidence remains of a molybdopterin binding site, this protein domain belongs to t
Probab=100.00 E-value=0 Score=620.69 Aligned_cols=369 Identities=29% Similarity=0.441 Sum_probs=304.8
Q ss_pred EECCCCCCCCCEEEEECCCCEEEEEECCCCCCCCCCEECCCCCCCCCHHH-HCCCCHHHEECCCCEEECCHHHHHHHHHH
Q ss_conf 20121168864366751599998852478887777411355422100000-00011011002222023241456688875
Q gi|254780859|r 231 DSIDVMDALGSAIRIDARGCEVMRILPRINESINEEWISDKTRFIWDGLK-VQRLDCPYARINGRLKPVSWDYALKAIKS 309 (700)
Q Consensus 231 ~SvC~~C~~GC~i~v~v~~g~i~rv~~~~~~~vN~g~lC~KGRf~~d~~~-~dRL~~PliR~~g~~~~iSWdeAl~~ia~ 309 (700)
T Consensus 1 ~SvC~~C~~GC~i~v~~~~g~v~rv~~~~~~~vN~g~lC~KGr~~~~~v~~~dRl~~PliR~~g~~~~isWdeAl~~ia~ 80 (414)
T cd02772 1 KSVSPHDALGSNLVVHVKNNKVMRVVPRENEAINECWLSDRDRFSYEGLNSEDRLTKPMIKKDGQWQEVDWETALEYVAE 80 (414)
T ss_pred CCCCCCCCCCCCCEEEEECCEEEEEECCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCEECCCCCEEEECHHHHHHHHHH
T ss_conf 95793999887828999899999987888998887620543131000237845046884914993657179999999999
Q ss_pred HHCCCCCC-----EEEEECCCCCCHHHHHHHHHHHHCCCCCEECCCCCCCCCHHHH-CCCCCCCCCHHHHHCCCEEEEEC
Q ss_conf 20134453-----1478504323235554788986368772420233444664340-12546778787740185799973
Q gi|254780859|r 310 AVLSSDVK-----LGAVVGDLSSVEEIYALKLLMQSLGCENFDCRQNGEYLDPSYG-RASYIFNPTIQGIEEADAMLIIG 383 (700)
Q Consensus 310 ~L~~~~~~-----~g~~~g~~~t~Ee~y~~k~l~~~lGt~nid~~~~~~~~~~~~~-~~~~~~~~~i~die~ad~illiG 383 (700)
T Consensus 81 kl~~i~~~~G~~sia~~~s~~~~~E~~~~~~kf~~~lGt~n~d~~~~~~~~~~~~~~~~~~~~~~~~~Di~~ad~ivl~G 160 (414)
T cd02772 81 GLSAIIKKHGADQIGALASPHSTLEELYLLQKLARGLGSDNIDHRLRQSDFRDDAKASGAPWLGMPIAEISELDRVLVIG 160 (414)
T ss_pred HHHHHHHHHCCCCCCEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHCCEEEEEC
T ss_conf 99999987487533130489886899999999999769976245423444214565324877799888898599899985
Q ss_pred CCCCCCCCCHHHHHHHHHHCCCCEEECCCCCHHHHHHHHC---CCC--CHHHHHH------------------H---HCC
Q ss_conf 8532257310257789997599706616850122334430---489--8678888------------------8---268
Q gi|254780859|r 384 SNPRLEAAVLNARIRKRWRRGNFPIAVIGDVGELRYKYEH---LGN--GSEALAD------------------L---VSG 437 (700)
Q Consensus 384 ~Np~~~~Pvl~~rirka~~~g~~~I~vi~~~~~l~~~~~~---l~~--~~e~l~~------------------~---~~g 437 (700)
T Consensus 161 ~n~~~~~Pil~~rir~a~k~gaklividP~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (414)
T cd02772 161 SNLRKEHPLLAQRLRQAVKKGAKLSAINPADDDFLFPLSGKAIVAPSALANALAQVAKALAEEKGLAVPDEDAKVEASEE 240 (414)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHCCCCEECCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCHHH
T ss_conf 88788759999999999987998999868752655416755042874589999999999998635881677764451889
Q ss_pred CCHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCHHH
Q ss_conf 77889998723531023544332104746989898999887410585334754246753104521017765865236888
Q gi|254780859|r 438 QHPFFKKLQEATRPLIIVGQGALRASDNVEVMANIAKLVIDVGGISDSWNGFAVLHTVASRVGALDLGFVPADDTINAMN 517 (700)
Q Consensus 438 ~~~~~~~l~~a~~~~ii~G~g~~~~~~g~~~~~al~~l~~~~G~ig~~g~G~~~L~~~~n~~Ga~d~g~~P~~~~~~~~~ 517 (700)
T Consensus 241 ~~~~a~~~~~a~~~~ii~g~~~~~~~~~~~~~~~~~~l~~~~g~------~~g~l~~~~n~~G~~~~g~~p~~-~~~~~~ 313 (414)
T cd02772 241 ARKIAASLVSAERAAVFLGNLAQNHPQAATLRALAQEIAKLTGA------TLGVLGEGANSVGAYLAGALPHG-GLNAAA 313 (414)
T ss_pred HHHHHHHHHCCCCEEEEECHHHHCCHHHHHHHHHHHHHHHHHCC------CCCCCCCCCCHHHHHHHCCCCCC-CCCHHH
T ss_conf 99999998527882999891475374599999999999998688------61657887305878873679888-857888
Q ss_pred HH-HCCCEEEECCCCHH----------HCCCCCCEEEHHHHHHHHHHH-HCCEEECCCCCCCCCCEEEEECCEEEEECCC
Q ss_conf 86-01675998076422----------016654345022116666887-4557704786202472088208867420443
Q gi|254780859|r 518 IL-DKTDIVFLLGADEL----------DFSDKQALTVYIGSHGDRGAQ-SADVILPGAAYTEKSGLWVNTEGRVQMGMRA 585 (700)
Q Consensus 518 ~~-~~~~~l~~~g~d~l----------~~~~~~~fvV~~d~~~t~tA~-~ADVVLP~a~~~Ek~Gtf~N~EgRvQ~~~~a 585 (700)
T Consensus 314 ~~~~~~~~~~i~~~nP~~~~~~~~~~~~al~k~df~Vv~d~f~teta~~~ADVVLPaat~~Ek~Gt~~n~egrvq~~~~~ 393 (414)
T cd02772 314 MLEQPRKAYLLLNVEPELDCANPAQALAALNQAEFVVALSAFASAALLDYADVLLPIAPFTETSGTFVNLEGRVQSFKGV 393 (414)
T ss_pred HHHCCCCEEEEECCCCCCCCCCHHHHHHHHHCCCCEEEECCCCCCHHHHCCCEEECCCCCCCCCEEEECCCCEEEEECCC
T ss_conf 74075644999756733367798999999757994999878689026618859986988543780798778833872426
Q ss_pred CCCCCCCCHHHHHHHHHHHHH
Q ss_conf 288555740799999999980
Q gi|254780859|r 586 IFPPGDAKEDWEIICALADEL 606 (700)
Q Consensus 586 v~p~geak~dw~Il~~La~~L 606 (700)
T Consensus 394 v~p~Geak~dw~Il~~l~~~l 414 (414)
T cd02772 394 VKPLGEARPAWKVLRVLGNLL 414 (414)
T ss_pred CCCCCCCHHHHHHHHHHHHCC
T ss_conf 589855738899999998549