BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780859|ref|YP_003065272.1| NADH dehydrogenase subunit G
[Candidatus Liberibacter asiaticus str. psy62]
         (700 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780859|ref|YP_003065272.1| NADH dehydrogenase subunit G [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 700

 Score = 1445 bits (3741), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 700/700 (100%), Positives = 700/700 (100%)

Query: 1   MQMMVKLKVDGIEIEVPSGFTILQACELAGAEIPRFCFHERLSIAGNCRMCLVEIKGIAS 60
           MQMMVKLKVDGIEIEVPSGFTILQACELAGAEIPRFCFHERLSIAGNCRMCLVEIKGIAS
Sbjct: 1   MQMMVKLKVDGIEIEVPSGFTILQACELAGAEIPRFCFHERLSIAGNCRMCLVEIKGIAS 60

Query: 61  KPQASCAMNVSDLRAGPNGELPEVFTKSSMVKKARAGVMEFLLINHPLDCPICDQGGECD 120
           KPQASCAMNVSDLRAGPNGELPEVFTKSSMVKKARAGVMEFLLINHPLDCPICDQGGECD
Sbjct: 61  KPQASCAMNVSDLRAGPNGELPEVFTKSSMVKKARAGVMEFLLINHPLDCPICDQGGECD 120

Query: 121 LQDQAIFFGFGSSRYSEEKRAVEDKSIGPLVKTVMNRCIHCTRCVRFITEVAGVSELGLV 180
           LQDQAIFFGFGSSRYSEEKRAVEDKSIGPLVKTVMNRCIHCTRCVRFITEVAGVSELGLV
Sbjct: 121 LQDQAIFFGFGSSRYSEEKRAVEDKSIGPLVKTVMNRCIHCTRCVRFITEVAGVSELGLV 180

Query: 181 GRGENAEITTYLEQSLTSEMQGNIIDLCPVGALTSKPFAFTGRSWELTKTDSIDVMDALG 240
           GRGENAEITTYLEQSLTSEMQGNIIDLCPVGALTSKPFAFTGRSWELTKTDSIDVMDALG
Sbjct: 181 GRGENAEITTYLEQSLTSEMQGNIIDLCPVGALTSKPFAFTGRSWELTKTDSIDVMDALG 240

Query: 241 SAIRIDARGCEVMRILPRINESINEEWISDKTRFIWDGLKVQRLDCPYARINGRLKPVSW 300
           SAIRIDARGCEVMRILPRINESINEEWISDKTRFIWDGLKVQRLDCPYARINGRLKPVSW
Sbjct: 241 SAIRIDARGCEVMRILPRINESINEEWISDKTRFIWDGLKVQRLDCPYARINGRLKPVSW 300

Query: 301 DYALKAIKSAVLSSDVKLGAVVGDLSSVEEIYALKLLMQSLGCENFDCRQNGEYLDPSYG 360
           DYALKAIKSAVLSSDVKLGAVVGDLSSVEEIYALKLLMQSLGCENFDCRQNGEYLDPSYG
Sbjct: 301 DYALKAIKSAVLSSDVKLGAVVGDLSSVEEIYALKLLMQSLGCENFDCRQNGEYLDPSYG 360

Query: 361 RASYIFNPTIQGIEEADAMLIIGSNPRLEAAVLNARIRKRWRRGNFPIAVIGDVGELRYK 420
           RASYIFNPTIQGIEEADAMLIIGSNPRLEAAVLNARIRKRWRRGNFPIAVIGDVGELRYK
Sbjct: 361 RASYIFNPTIQGIEEADAMLIIGSNPRLEAAVLNARIRKRWRRGNFPIAVIGDVGELRYK 420

Query: 421 YEHLGNGSEALADLVSGQHPFFKKLQEATRPLIIVGQGALRASDNVEVMANIAKLVIDVG 480
           YEHLGNGSEALADLVSGQHPFFKKLQEATRPLIIVGQGALRASDNVEVMANIAKLVIDVG
Sbjct: 421 YEHLGNGSEALADLVSGQHPFFKKLQEATRPLIIVGQGALRASDNVEVMANIAKLVIDVG 480

Query: 481 GISDSWNGFAVLHTVASRVGALDLGFVPADDTINAMNILDKTDIVFLLGADELDFSDKQA 540
           GISDSWNGFAVLHTVASRVGALDLGFVPADDTINAMNILDKTDIVFLLGADELDFSDKQA
Sbjct: 481 GISDSWNGFAVLHTVASRVGALDLGFVPADDTINAMNILDKTDIVFLLGADELDFSDKQA 540

Query: 541 LTVYIGSHGDRGAQSADVILPGAAYTEKSGLWVNTEGRVQMGMRAIFPPGDAKEDWEIIC 600
           LTVYIGSHGDRGAQSADVILPGAAYTEKSGLWVNTEGRVQMGMRAIFPPGDAKEDWEIIC
Sbjct: 541 LTVYIGSHGDRGAQSADVILPGAAYTEKSGLWVNTEGRVQMGMRAIFPPGDAKEDWEIIC 600

Query: 601 ALADELKCSLPFSSLSQLRSHLYSHHPHFMQLDEIRPSATDGIYALAKKVGKMQKRNFVS 660
           ALADELKCSLPFSSLSQLRSHLYSHHPHFMQLDEIRPSATDGIYALAKKVGKMQKRNFVS
Sbjct: 601 ALADELKCSLPFSSLSQLRSHLYSHHPHFMQLDEIRPSATDGIYALAKKVGKMQKRNFVS 660

Query: 661 TVENFYLANSIARASATMAQCSLVAQSCEKRIFDSAKELG 700
           TVENFYLANSIARASATMAQCSLVAQSCEKRIFDSAKELG
Sbjct: 661 TVENFYLANSIARASATMAQCSLVAQSCEKRIFDSAKELG 700


>gi|254780695|ref|YP_003065108.1| flagellar MS-ring protein [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 563

 Score = 26.6 bits (57), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 8/77 (10%)

Query: 490 AVLHTVASRVGALDLGFVPADD------TINAM--NILDKTDIVFLLGADELDFSDKQAL 541
           A+ H VA+ V  LD+G V   D      T N M  NIL K+  +      E++ +  +AL
Sbjct: 190 AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKAL 249

Query: 542 TVYIGSHGDRGAQSADV 558
             ++G    R A  A++
Sbjct: 250 AAFLGVDNFRSAVVAEL 266


>gi|254780268|ref|YP_003064681.1| acetyl-CoA carboxylase biotin carboxylase subunit [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 443

 Score = 24.3 bits (51), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 13/37 (35%), Positives = 18/37 (48%)

Query: 237 DALGSAIRIDARGCEVMRILPRINESINEEWISDKTR 273
           D +G+AI    R C V R   +I E  +   IS + R
Sbjct: 214 DGMGNAIHFGERDCSVQRRNQKIWEEAHSPVISAQDR 250


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.320    0.136    0.405 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 423,493
Number of Sequences: 1233
Number of extensions: 17210
Number of successful extensions: 46
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 43
Number of HSP's gapped (non-prelim): 5
length of query: 700
length of database: 328,796
effective HSP length: 80
effective length of query: 620
effective length of database: 230,156
effective search space: 142696720
effective search space used: 142696720
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 42 (20.8 bits)