BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780859|ref|YP_003065272.1| NADH dehydrogenase subunit G [Candidatus Liberibacter asiaticus str. psy62] (700 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780859|ref|YP_003065272.1| NADH dehydrogenase subunit G [Candidatus Liberibacter asiaticus str. psy62] Length = 700 Score = 1445 bits (3741), Expect = 0.0, Method: Compositional matrix adjust. Identities = 700/700 (100%), Positives = 700/700 (100%) Query: 1 MQMMVKLKVDGIEIEVPSGFTILQACELAGAEIPRFCFHERLSIAGNCRMCLVEIKGIAS 60 MQMMVKLKVDGIEIEVPSGFTILQACELAGAEIPRFCFHERLSIAGNCRMCLVEIKGIAS Sbjct: 1 MQMMVKLKVDGIEIEVPSGFTILQACELAGAEIPRFCFHERLSIAGNCRMCLVEIKGIAS 60 Query: 61 KPQASCAMNVSDLRAGPNGELPEVFTKSSMVKKARAGVMEFLLINHPLDCPICDQGGECD 120 KPQASCAMNVSDLRAGPNGELPEVFTKSSMVKKARAGVMEFLLINHPLDCPICDQGGECD Sbjct: 61 KPQASCAMNVSDLRAGPNGELPEVFTKSSMVKKARAGVMEFLLINHPLDCPICDQGGECD 120 Query: 121 LQDQAIFFGFGSSRYSEEKRAVEDKSIGPLVKTVMNRCIHCTRCVRFITEVAGVSELGLV 180 LQDQAIFFGFGSSRYSEEKRAVEDKSIGPLVKTVMNRCIHCTRCVRFITEVAGVSELGLV Sbjct: 121 LQDQAIFFGFGSSRYSEEKRAVEDKSIGPLVKTVMNRCIHCTRCVRFITEVAGVSELGLV 180 Query: 181 GRGENAEITTYLEQSLTSEMQGNIIDLCPVGALTSKPFAFTGRSWELTKTDSIDVMDALG 240 GRGENAEITTYLEQSLTSEMQGNIIDLCPVGALTSKPFAFTGRSWELTKTDSIDVMDALG Sbjct: 181 GRGENAEITTYLEQSLTSEMQGNIIDLCPVGALTSKPFAFTGRSWELTKTDSIDVMDALG 240 Query: 241 SAIRIDARGCEVMRILPRINESINEEWISDKTRFIWDGLKVQRLDCPYARINGRLKPVSW 300 SAIRIDARGCEVMRILPRINESINEEWISDKTRFIWDGLKVQRLDCPYARINGRLKPVSW Sbjct: 241 SAIRIDARGCEVMRILPRINESINEEWISDKTRFIWDGLKVQRLDCPYARINGRLKPVSW 300 Query: 301 DYALKAIKSAVLSSDVKLGAVVGDLSSVEEIYALKLLMQSLGCENFDCRQNGEYLDPSYG 360 DYALKAIKSAVLSSDVKLGAVVGDLSSVEEIYALKLLMQSLGCENFDCRQNGEYLDPSYG Sbjct: 301 DYALKAIKSAVLSSDVKLGAVVGDLSSVEEIYALKLLMQSLGCENFDCRQNGEYLDPSYG 360 Query: 361 RASYIFNPTIQGIEEADAMLIIGSNPRLEAAVLNARIRKRWRRGNFPIAVIGDVGELRYK 420 RASYIFNPTIQGIEEADAMLIIGSNPRLEAAVLNARIRKRWRRGNFPIAVIGDVGELRYK Sbjct: 361 RASYIFNPTIQGIEEADAMLIIGSNPRLEAAVLNARIRKRWRRGNFPIAVIGDVGELRYK 420 Query: 421 YEHLGNGSEALADLVSGQHPFFKKLQEATRPLIIVGQGALRASDNVEVMANIAKLVIDVG 480 YEHLGNGSEALADLVSGQHPFFKKLQEATRPLIIVGQGALRASDNVEVMANIAKLVIDVG Sbjct: 421 YEHLGNGSEALADLVSGQHPFFKKLQEATRPLIIVGQGALRASDNVEVMANIAKLVIDVG 480 Query: 481 GISDSWNGFAVLHTVASRVGALDLGFVPADDTINAMNILDKTDIVFLLGADELDFSDKQA 540 GISDSWNGFAVLHTVASRVGALDLGFVPADDTINAMNILDKTDIVFLLGADELDFSDKQA Sbjct: 481 GISDSWNGFAVLHTVASRVGALDLGFVPADDTINAMNILDKTDIVFLLGADELDFSDKQA 540 Query: 541 LTVYIGSHGDRGAQSADVILPGAAYTEKSGLWVNTEGRVQMGMRAIFPPGDAKEDWEIIC 600 LTVYIGSHGDRGAQSADVILPGAAYTEKSGLWVNTEGRVQMGMRAIFPPGDAKEDWEIIC Sbjct: 541 LTVYIGSHGDRGAQSADVILPGAAYTEKSGLWVNTEGRVQMGMRAIFPPGDAKEDWEIIC 600 Query: 601 ALADELKCSLPFSSLSQLRSHLYSHHPHFMQLDEIRPSATDGIYALAKKVGKMQKRNFVS 660 ALADELKCSLPFSSLSQLRSHLYSHHPHFMQLDEIRPSATDGIYALAKKVGKMQKRNFVS Sbjct: 601 ALADELKCSLPFSSLSQLRSHLYSHHPHFMQLDEIRPSATDGIYALAKKVGKMQKRNFVS 660 Query: 661 TVENFYLANSIARASATMAQCSLVAQSCEKRIFDSAKELG 700 TVENFYLANSIARASATMAQCSLVAQSCEKRIFDSAKELG Sbjct: 661 TVENFYLANSIARASATMAQCSLVAQSCEKRIFDSAKELG 700 >gi|254780695|ref|YP_003065108.1| flagellar MS-ring protein [Candidatus Liberibacter asiaticus str. psy62] Length = 563 Score = 26.6 bits (57), Expect = 1.4, Method: Compositional matrix adjust. Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 8/77 (10%) Query: 490 AVLHTVASRVGALDLGFVPADD------TINAM--NILDKTDIVFLLGADELDFSDKQAL 541 A+ H VA+ V LD+G V D T N M NIL K+ + E++ + +AL Sbjct: 190 AIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKAL 249 Query: 542 TVYIGSHGDRGAQSADV 558 ++G R A A++ Sbjct: 250 AAFLGVDNFRSAVVAEL 266 >gi|254780268|ref|YP_003064681.1| acetyl-CoA carboxylase biotin carboxylase subunit [Candidatus Liberibacter asiaticus str. psy62] Length = 443 Score = 24.3 bits (51), Expect = 7.8, Method: Compositional matrix adjust. Identities = 13/37 (35%), Positives = 18/37 (48%) Query: 237 DALGSAIRIDARGCEVMRILPRINESINEEWISDKTR 273 D +G+AI R C V R +I E + IS + R Sbjct: 214 DGMGNAIHFGERDCSVQRRNQKIWEEAHSPVISAQDR 250 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.320 0.136 0.405 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 423,493 Number of Sequences: 1233 Number of extensions: 17210 Number of successful extensions: 46 Number of sequences better than 100.0: 5 Number of HSP's better than 100.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 43 Number of HSP's gapped (non-prelim): 5 length of query: 700 length of database: 328,796 effective HSP length: 80 effective length of query: 620 effective length of database: 230,156 effective search space: 142696720 effective search space used: 142696720 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 42 (20.8 bits)