HHsearch alignment for GI: 254780860 and conserved domain: CHL00032
>CHL00032 ndhA NADH dehydrogenase subunit 1.
Probab=100.00 E-value=0 Score=681.62 Aligned_cols=325 Identities=37% Similarity=0.650 Sum_probs=308.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH
Q ss_conf 99999999999999999999999999999999999972789985744531888999999986305464535403898589
Q gi|254780860|r 9 FVPLFFMAIKSIVFLVGLLIFIAYVLLMDRKVWAAVQLRRGPNVVGPWGLLQSFADFLKFVFKEPIIPSKSNKILFLLAP 88 (348)
Q Consensus 9 ~~~~~~~~i~~i~~~i~~l~~~~f~~~~eRKi~A~iQ~R~GP~~vg~~GilQp~~D~~KL~~Ke~i~p~~~~~~~f~~~P 88 (348)
T Consensus 19 ~~~~~~~~i~i~~~~~~vll~Vaf~tl~ERKila~~Q~R~GPn~vg~~GllQpiaD~~KLl~KE~i~p~~a~~~~f~~aP 98 (359)
T CHL00032 19 VYGLIWILVPILTLVLGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGTKLLFKEDLIPSRGDTRLFSIGP 98 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999998654718082571255699999999998677861034799999999
Q ss_pred HHHHHHHHHHHHCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 89999998665318785523564050578999999999999999987512443210123344310136787668999999
Q gi|254780860|r 89 LVSVILSLSAWAVVPVADGWIIADINVGILYILAISSLEIYGIIIGGWASNSKYAFLGALRSAAQMISYEVSIGLVIVTV 168 (348)
Q Consensus 89 ~i~~~~~~~~~~~iP~~~~~~~~~~~~~ll~~~~l~sl~~~~i~l~G~~S~s~ys~iG~~R~~~q~isyE~~l~l~i~~~ 168 (348)
T Consensus 99 ~l~~~~~~l~~~~iP~~~~~~~~~~~~~ll~~l~~~sl~~~~ill~GWaSnskYs~lG~~R~~aq~ISYEi~l~l~~~~~ 178 (359)
T CHL00032 99 SIAVISILLSYLVIPFGYHLVLADLSIGVFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 178 (359)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999996146653210544999999999988999888101112768889999999999999889999999999
Q ss_pred HHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCH
Q ss_conf 99823789899999851000022111124466699999989999999976875430100357608888987543023201
Q gi|254780860|r 169 VLCAGSLNLTDIVYSQKSGLGTFLGFPPSMLDWYWLALFPMFVVFFISLLAETNRPPFDLSEAESELVAGYMVEYSSTPY 248 (348)
Q Consensus 169 ~l~~gs~~~~~iv~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~lae~~R~PFD~~EaEsELv~G~~tEYsG~~~ 248 (348)
T Consensus 179 ~l~~gs~sl~~iv~~Q~~~~---------~~~w~~~~~P~~fiiflI~~lAE~nR~PFDl~EaESELVsG~~tEYsG~~f 249 (359)
T CHL00032 179 SLLSNSLSTVDIVEAQSKYG---------FWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKF 249 (359)
T ss_pred HHHHCCCCHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCCCCCHHH
T ss_conf 99947886899999988789---------999999998999999999999984899999886409885141320164979
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 1588999999999999999732365543122-------------366665689999999999999999999741012549
Q gi|254780860|r 249 LLFMLAEYSTIVLMCTLASILFLGGWLPPFD-------------ISLFKSIPGFFWLVFKTLGLFFMVAMVKAFVPRYRY 315 (348)
Q Consensus 249 ~l~~l~ey~~~~~~s~l~~~lFlGg~~~p~~-------------~~~~~~l~~~~~~~~k~~~~~~~~i~ir~~~pR~R~ 315 (348)
T Consensus 250 ~lffl~EY~~i~~~s~l~svLFlGGw~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~K~~~~~f~~iwiR~t~PR~Ry 329 (359)
T CHL00032 250 GLFYVASYLNLLVSSLFVTVLYLGGWNLSIPYIFIPELFEINKTGGVFGTTIGIFITLAKTYLFLFISITTRWTLPRLRM 329 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
T ss_conf 99999999999999999999970677665421111023100001236777789999999999999999999981701539
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999885427899999999999999999
Q gi|254780860|r 316 DQLMRLGWKVFLPLSFAMVLIVSFFLK 342 (348)
Q Consensus 316 Dq~~~~~Wk~llpl~l~~~~~~~~~~~ 342 (348)
T Consensus 330 Dqlm~l~WK~lLPlal~~l~l~~~~~~ 356 (359)
T CHL00032 330 DQLLNLGWKFLLPISLGNLLLTTSSQL 356 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999998999999999999999999999