HHsearch alignment for GI: 254780860 and conserved domain: MTH00040

>MTH00040 ND1 NADH dehydrogenase subunit 1; Validated.
Probab=100.00  E-value=0  Score=654.64  Aligned_cols=318  Identities=43%  Similarity=0.804  Sum_probs=299.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH
Q ss_conf             99999999999999999999999999999999999727899857445318889999999863054645354038985898
Q gi|254780860|r   10 VPLFFMAIKSIVFLVGLLIFIAYVLLMDRKVWAAVQLRRGPNVVGPWGLLQSFADFLKFVFKEPIIPSKSNKILFLLAPL   89 (348)
Q Consensus        10 ~~~~~~~i~~i~~~i~~l~~~~f~~~~eRKi~A~iQ~R~GP~~vg~~GilQp~~D~~KL~~Ke~i~p~~~~~~~f~~~P~   89 (348)
T Consensus         1 ~~~~~~~i~~~~~~~~vl~~vaf~tl~ERKila~~Q~R~GPn~vg~~GllQp~aD~iKLl~Ke~i~p~~~~~~~f~~aP~   80 (323)
T MTH00040          1 MTYILFLLNSINFIIPVLLAVAFLTLVERKVLGYMQLRKGPNIVGPYGLLQPIADGFKLFIKETLKPSNASPYLFFLSPA   80 (323)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH
T ss_conf             93799999999999999999999999999999998658080866754446999999999882787754120899999999


Q ss_pred             HHHHHHHHHHHCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999986653187855235640505789999999999999999875124432101233443101367876689999999
Q gi|254780860|r   90 VSVILSLSAWAVVPVADGWIIADINVGILYILAISSLEIYGIIIGGWASNSKYAFLGALRSAAQMISYEVSIGLVIVTVV  169 (348)
Q Consensus        90 i~~~~~~~~~~~iP~~~~~~~~~~~~~ll~~~~l~sl~~~~i~l~G~~S~s~ys~iG~~R~~~q~isyE~~l~l~i~~~~  169 (348)
T Consensus        81 i~~~~~~~~~~~iP~~~~--~~~~~~~ll~~l~i~sl~~~~~ll~GwsSnskYs~iGa~R~~aq~iSYEv~l~l~~l~~~  158 (323)
T MTH00040         81 LFLFLALLLWSIIPVHNP--TLNINLSLLLVLGLSSLSVYSLLGSGWASNSKYSLLGAIRAVAQTISYEISLGLILLSLI  158 (323)
T ss_pred             HHHHHHHHHHHHHHCCCC--EEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999999999706885--033133699999998637888886313468854464161899987413387899999999


Q ss_pred             HHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCHH
Q ss_conf             98237898999998510000221111244666999999899999999768754301003576088889875430232011
Q gi|254780860|r  170 LCAGSLNLTDIVYSQKSGLGTFLGFPPSMLDWYWLALFPMFVVFFISLLAETNRPPFDLSEAESELVAGYMVEYSSTPYL  249 (348)
Q Consensus       170 l~~gs~~~~~iv~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~lae~~R~PFD~~EaEsELv~G~~tEYsG~~~~  249 (348)
T Consensus       159 ~~~gs~~l~~i~~~q~~-------------~~~~~~~~~~f~~~~i~~laE~nR~PFDl~EaEsELVsG~~tEYsg~~f~  225 (323)
T MTH00040        159 IFSGGFNLNYIENSQEG-------------SWLAFSCLPLFYIWFISTLAETNRAPFDLTEGESEIVSGYNVEYAGGPFA  225 (323)
T ss_pred             HHCCCCCHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCEEHHCCCCHHHH
T ss_conf             96378869999999688-------------99999999999999999999968999988865321134110023667679


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             58899999999999999973236554312236666568999999999999999999974101254999988542789999
Q gi|254780860|r  250 LFMLAEYSTIVLMCTLASILFLGGWLPPFDISLFKSIPGFFWLVFKTLGLFFMVAMVKAFVPRYRYDQLMRLGWKVFLPL  329 (348)
Q Consensus       250 l~~l~ey~~~~~~s~l~~~lFlGg~~~p~~~~~~~~l~~~~~~~~k~~~~~~~~i~ir~~~pR~R~Dq~~~~~Wk~llpl  329 (348)
T Consensus       226 l~flaEY~~i~~~s~l~~~lFlGg~~p~~~~----~~~~~~~~~lk~~~~~~~~i~vR~~~PR~R~Dqlm~~~Wk~lLPl  301 (323)
T MTH00040        226 LFFIAEYANIIFMNLLSVVLFLGGSSPINEL----FPINIIIVGIKTTFLVFLFLWVRASYPRFRYDQLMFLTWKSYLPL  301 (323)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH----HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
T ss_conf             9999999999999999999982888531014----478999999999999999999998173065999899888999999


Q ss_pred             HHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999976
Q gi|254780860|r  330 SFAMVLIVSFFLKIYTL  346 (348)
Q Consensus       330 ~l~~~~~~~~~~~~~~~  346 (348)
T Consensus       302 ~l~~l~~~~~l~~~~~~  318 (323)
T MTH00040        302 SIGFLIFFIILLSSLNI  318 (323)
T ss_pred             HHHHHHHHHHHHHHHCC
T ss_conf             99999999999999817