HHsearch alignment for GI: 254780860 and conserved domain: MTH00040
>MTH00040 ND1 NADH dehydrogenase subunit 1; Validated.
Probab=100.00 E-value=0 Score=654.64 Aligned_cols=318 Identities=43% Similarity=0.804 Sum_probs=299.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH
Q ss_conf 99999999999999999999999999999999999727899857445318889999999863054645354038985898
Q gi|254780860|r 10 VPLFFMAIKSIVFLVGLLIFIAYVLLMDRKVWAAVQLRRGPNVVGPWGLLQSFADFLKFVFKEPIIPSKSNKILFLLAPL 89 (348)
Q Consensus 10 ~~~~~~~i~~i~~~i~~l~~~~f~~~~eRKi~A~iQ~R~GP~~vg~~GilQp~~D~~KL~~Ke~i~p~~~~~~~f~~~P~ 89 (348)
T Consensus 1 ~~~~~~~i~~~~~~~~vl~~vaf~tl~ERKila~~Q~R~GPn~vg~~GllQp~aD~iKLl~Ke~i~p~~~~~~~f~~aP~ 80 (323)
T MTH00040 1 MTYILFLLNSINFIIPVLLAVAFLTLVERKVLGYMQLRKGPNIVGPYGLLQPIADGFKLFIKETLKPSNASPYLFFLSPA 80 (323)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH
T ss_conf 93799999999999999999999999999999998658080866754446999999999882787754120899999999
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999986653187855235640505789999999999999999875124432101233443101367876689999999
Q gi|254780860|r 90 VSVILSLSAWAVVPVADGWIIADINVGILYILAISSLEIYGIIIGGWASNSKYAFLGALRSAAQMISYEVSIGLVIVTVV 169 (348)
Q Consensus 90 i~~~~~~~~~~~iP~~~~~~~~~~~~~ll~~~~l~sl~~~~i~l~G~~S~s~ys~iG~~R~~~q~isyE~~l~l~i~~~~ 169 (348)
T Consensus 81 i~~~~~~~~~~~iP~~~~--~~~~~~~ll~~l~i~sl~~~~~ll~GwsSnskYs~iGa~R~~aq~iSYEv~l~l~~l~~~ 158 (323)
T MTH00040 81 LFLFLALLLWSIIPVHNP--TLNINLSLLLVLGLSSLSVYSLLGSGWASNSKYSLLGAIRAVAQTISYEISLGLILLSLI 158 (323)
T ss_pred HHHHHHHHHHHHHHCCCC--EEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999706885--033133699999998637888886313468854464161899987413387899999999
Q ss_pred HHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCHH
Q ss_conf 98237898999998510000221111244666999999899999999768754301003576088889875430232011
Q gi|254780860|r 170 LCAGSLNLTDIVYSQKSGLGTFLGFPPSMLDWYWLALFPMFVVFFISLLAETNRPPFDLSEAESELVAGYMVEYSSTPYL 249 (348)
Q Consensus 170 l~~gs~~~~~iv~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~lae~~R~PFD~~EaEsELv~G~~tEYsG~~~~ 249 (348)
T Consensus 159 ~~~gs~~l~~i~~~q~~-------------~~~~~~~~~~f~~~~i~~laE~nR~PFDl~EaEsELVsG~~tEYsg~~f~ 225 (323)
T MTH00040 159 IFSGGFNLNYIENSQEG-------------SWLAFSCLPLFYIWFISTLAETNRAPFDLTEGESEIVSGYNVEYAGGPFA 225 (323)
T ss_pred HHCCCCCHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCEEHHCCCCHHHH
T ss_conf 96378869999999688-------------99999999999999999999968999988865321134110023667679
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 58899999999999999973236554312236666568999999999999999999974101254999988542789999
Q gi|254780860|r 250 LFMLAEYSTIVLMCTLASILFLGGWLPPFDISLFKSIPGFFWLVFKTLGLFFMVAMVKAFVPRYRYDQLMRLGWKVFLPL 329 (348)
Q Consensus 250 l~~l~ey~~~~~~s~l~~~lFlGg~~~p~~~~~~~~l~~~~~~~~k~~~~~~~~i~ir~~~pR~R~Dq~~~~~Wk~llpl 329 (348)
T Consensus 226 l~flaEY~~i~~~s~l~~~lFlGg~~p~~~~----~~~~~~~~~lk~~~~~~~~i~vR~~~PR~R~Dqlm~~~Wk~lLPl 301 (323)
T MTH00040 226 LFFIAEYANIIFMNLLSVVLFLGGSSPINEL----FPINIIIVGIKTTFLVFLFLWVRASYPRFRYDQLMFLTWKSYLPL 301 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH----HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999982888531014----478999999999999999999998173065999899888999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999976
Q gi|254780860|r 330 SFAMVLIVSFFLKIYTL 346 (348)
Q Consensus 330 ~l~~~~~~~~~~~~~~~ 346 (348)
T Consensus 302 ~l~~l~~~~~l~~~~~~ 318 (323)
T MTH00040 302 SIGFLIFFIILLSSLNI 318 (323)
T ss_pred HHHHHHHHHHHHHHHCC
T ss_conf 99999999999999817