HHsearch alignment for GI: 254780860 and conserved domain: MTH00090
>MTH00090 ND1 NADH dehydrogenase subunit 1; Provisional.
Probab=100.00 E-value=0 Score=604.61 Aligned_cols=283 Identities=36% Similarity=0.665 Sum_probs=264.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999972789985744531888999999986305464535403898589899999986
Q gi|254780860|r 18 KSIVFLVGLLIFIAYVLLMDRKVWAAVQLRRGPNVVGPWGLLQSFADFLKFVFKEPIIPSKSNKILFLLAPLVSVILSLS 97 (348)
Q Consensus 18 ~~i~~~i~~l~~~~f~~~~eRKi~A~iQ~R~GP~~vg~~GilQp~~D~~KL~~Ke~i~p~~~~~~~f~~~P~i~~~~~~~ 97 (348)
T Consensus 2 ~~~~~~~~vl~~vaf~tl~ERK~la~~Q~R~GPn~vg~~GllQp~aD~~KLl~Ke~i~p~~~~~~~f~~~P~~~~~~~~~ 81 (285)
T MTH00090 2 EVLLMMIFILQSIAFFTLYERHLLGLSQNRLGPNKVSFMGVLQAILDGVKLLKKEQLTPLNSSDLSFLLVPGVSFVVMYL 81 (285)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 21999999999999999999999999765818094683564499999999998467774521599999999999999999
Q ss_pred HHHCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
Q ss_conf 65318785523564050578999999999999999987512443210123344310136787668999999998237898
Q gi|254780860|r 98 AWAVVPVADGWIIADINVGILYILAISSLEIYGIIIGGWASNSKYAFLGALRSAAQMISYEVSIGLVIVTVVLCAGSLNL 177 (348)
Q Consensus 98 ~~~~iP~~~~~~~~~~~~~ll~~~~l~sl~~~~i~l~G~~S~s~ys~iG~~R~~~q~isyE~~l~l~i~~~~l~~gs~~~ 177 (348)
T Consensus 82 ~~~~iP~~~~--~~~~~~~ll~~l~l~sl~~~~i~l~Gw~S~skYs~iG~~R~~aq~iSYEi~l~l~~~~~~l~~gs~~~ 159 (285)
T MTH00090 82 EWFVLPYFFD--FINFEYSVLFFLCLIGFSVYTTLLSGWVSKSKYSFLGAIRASSQSISYEIAFSLYLLCFILHNNSFCF 159 (285)
T ss_pred HHHHCCCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
T ss_conf 9997146432--10565259999999988999999878543884145527589999999999999999999999777539
Q ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 99999851000022111124466699999989999999976875430100357608888987543023201158899999
Q gi|254780860|r 178 TDIVYSQKSGLGTFLGFPPSMLDWYWLALFPMFVVFFISLLAETNRPPFDLSEAESELVAGYMVEYSSTPYLLFMLAEYS 257 (348)
Q Consensus 178 ~~iv~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~lae~~R~PFD~~EaEsELv~G~~tEYsG~~~~l~~l~ey~ 257 (348)
T Consensus 160 ~~~---------------------~~~~~~~~~~~f~i~~lae~nR~PFDl~EaEsELVsG~~tEYsg~~f~l~fl~EY~ 218 (285)
T MTH00090 160 SSS---------------------FSLSLFVIYLPFLIMILAELNRAPFDFSEGESELVSGYNVEYSSVAFVLLFLSEYG 218 (285)
T ss_pred HHH---------------------HHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCEEECCHHHHHHHHHHHH
T ss_conf 999---------------------99999999999999999986899999884067887000002655789999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999997323655431223666656899999999999999999997410125499998854278999999999999
Q gi|254780860|r 258 TIVLMCTLASILFLGGWLPPFDISLFKSIPGFFWLVFKTLGLFFMVAMVKAFVPRYRYDQLMRLGWKVFLPLSFAMVLIV 337 (348)
Q Consensus 258 ~~~~~s~l~~~lFlGg~~~p~~~~~~~~l~~~~~~~~k~~~~~~~~i~ir~~~pR~R~Dq~~~~~Wk~llpl~l~~~~~~ 337 (348)
T Consensus 219 ~~~~~s~l~~~lFlg~~------------------~~~~~~~~~~~i~iR~~~PR~R~Dqlm~l~Wk~llPl~l~~l~~~ 280 (285)
T MTH00090 219 SLIFFSVLMSFLFFKFS------------------FFMLFLIFSLLIFIRSCYPRFRYDMMMSLFWFKFLPLSLIFLGFF 280 (285)
T ss_pred HHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999998589------------------999999999999999918507699999987899999999999999
Q ss_pred HHHH
Q ss_conf 9999
Q gi|254780860|r 338 SFFL 341 (348)
Q Consensus 338 ~~~~ 341 (348)
T Consensus 281 ~~l~ 284 (285)
T MTH00090 281 VVLF 284 (285)
T ss_pred HHHH
T ss_conf 9995