HHsearch alignment for GI: 254780860 and conserved domain: MTH00111
>MTH00111 ND1 NADH dehydrogenase subunit 1; Provisional.
Probab=100.00 E-value=0 Score=650.81 Aligned_cols=316 Identities=44% Similarity=0.776 Sum_probs=298.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH
Q ss_conf 99999999999999999999999999999999999727899857445318889999999863054645354038985898
Q gi|254780860|r 10 VPLFFMAIKSIVFLVGLLIFIAYVLLMDRKVWAAVQLRRGPNVVGPWGLLQSFADFLKFVFKEPIIPSKSNKILFLLAPL 89 (348)
Q Consensus 10 ~~~~~~~i~~i~~~i~~l~~~~f~~~~eRKi~A~iQ~R~GP~~vg~~GilQp~~D~~KL~~Ke~i~p~~~~~~~f~~~P~ 89 (348)
T Consensus 2 ~~~l~~li~~l~~~i~vl~~vaf~tl~ERKvla~~Q~R~GPn~vg~~GllQp~aD~lKLl~Ke~i~p~~~~~~~f~~aP~ 81 (323)
T MTH00111 2 MTLLTNLINPLLYIIPILIAVAFLTLLERKILGYMQLRKGPNIVGPFGLLQPVADGVKLFIKEPIRPSTSSPTLFILSPI 81 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 89999999999999999999999999999999986548180955776334888999999995886620038999999999
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999986653187855235640505789999999999999999875124432101233443101367876689999999
Q gi|254780860|r 90 VSVILSLSAWAVVPVADGWIIADINVGILYILAISSLEIYGIIIGGWASNSKYAFLGALRSAAQMISYEVSIGLVIVTVV 169 (348)
Q Consensus 90 i~~~~~~~~~~~iP~~~~~~~~~~~~~ll~~~~l~sl~~~~i~l~G~~S~s~ys~iG~~R~~~q~isyE~~l~l~i~~~~ 169 (348)
T Consensus 82 i~~~~~~~~~~~iP~~~--~~~~~~~~ll~~l~i~sl~~~~ill~Gw~SnskYs~iG~~R~~aq~iSYEv~l~l~~l~i~ 159 (323)
T MTH00111 82 LALLLALTIWTPLPMPF--PLADLNLGLLFLLAMSSLAVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGIILLSVI 159 (323)
T ss_pred HHHHHHHHHHHHCCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999988771102443--1001179999999999999999998531358865501088998899888999999999999
Q ss_pred HHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCHH
Q ss_conf 98237898999998510000221111244666999999899999999768754301003576088889875430232011
Q gi|254780860|r 170 LCAGSLNLTDIVYSQKSGLGTFLGFPPSMLDWYWLALFPMFVVFFISLLAETNRPPFDLSEAESELVAGYMVEYSSTPYL 249 (348)
Q Consensus 170 l~~gs~~~~~iv~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~lae~~R~PFD~~EaEsELv~G~~tEYsG~~~~ 249 (348)
T Consensus 160 ~~~gs~sl~~i~~~q~~-------------~~~~~~~~p~~ii~~i~~laE~nR~PFDl~EaEsELVsG~~tEYsg~~f~ 226 (323)
T MTH00111 160 LLSGGYTLQTLATTQEP-------------LYLIFSSWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFA 226 (323)
T ss_pred HHHCCCCHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCHHCCCCHHHH
T ss_conf 99568868889999987-------------99999999999999999999818999997742088863300423756699
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 58899999999999999973236554312236666568999999999999999999974101254999988542789999
Q gi|254780860|r 250 LFMLAEYSTIVLMCTLASILFLGGWLPPFDISLFKSIPGFFWLVFKTLGLFFMVAMVKAFVPRYRYDQLMRLGWKVFLPL 329 (348)
Q Consensus 250 l~~l~ey~~~~~~s~l~~~lFlGg~~~p~~~~~~~~l~~~~~~~~k~~~~~~~~i~ir~~~pR~R~Dq~~~~~Wk~llpl 329 (348)
T Consensus 227 l~fl~EY~~i~~~s~l~~~lFlg~~~~~~~~-----~~~~~~~~~k~~~~~~~~i~iR~~~PR~R~Dqlm~l~Wk~llPl 301 (323)
T MTH00111 227 LFFLAEYANILLMNTLTTILFLNPSTLNLPP-----ELFTINLMTKTLLLSSGFLWIRASYPRFRYDQLMHLLWKNFLPL 301 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH-----HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999980887421005-----89999999999999999999998073064999999899999999
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 9999999999999997
Q gi|254780860|r 330 SFAMVLIVSFFLKIYT 345 (348)
Q Consensus 330 ~l~~~~~~~~~~~~~~ 345 (348)
T Consensus 302 ~l~~~~~~~~~~~~~~ 317 (323)
T MTH00111 302 TLALCLWHTSMPISYA 317 (323)
T ss_pred HHHHHHHHHHHHHHHC
T ss_conf 9999999999999976