HHsearch alignment for GI: 254780860 and conserved domain: MTH00134
>MTH00134 ND1 NADH dehydrogenase subunit 1; Provisional.
Probab=100.00 E-value=0 Score=642.90 Aligned_cols=318 Identities=46% Similarity=0.784 Sum_probs=297.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH
Q ss_conf 99999999999999999999999999999999999727899857445318889999999863054645354038985898
Q gi|254780860|r 10 VPLFFMAIKSIVFLVGLLIFIAYVLLMDRKVWAAVQLRRGPNVVGPWGLLQSFADFLKFVFKEPIIPSKSNKILFLLAPL 89 (348)
Q Consensus 10 ~~~~~~~i~~i~~~i~~l~~~~f~~~~eRKi~A~iQ~R~GP~~vg~~GilQp~~D~~KL~~Ke~i~p~~~~~~~f~~~P~ 89 (348)
T Consensus 3 ~~~i~~~i~~l~~~i~vl~~vaf~tl~ERKila~~Q~R~GPn~vg~~GllQp~aD~iKLl~Ke~i~p~~~~~~~f~~~P~ 82 (324)
T MTH00134 3 STLITHIINPLAYIVPVLLAVAFLTLIERKVLGYMQLRKGPNIVGPYGLLQPIADGVKLFIKEPVRPSTSSPFLFLATPM 82 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999986557180945755113888999999881887600238999999999
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999986653187855235640505789999999999999999875124432101233443101367876689999999
Q gi|254780860|r 90 VSVILSLSAWAVVPVADGWIIADINVGILYILAISSLEIYGIIIGGWASNSKYAFLGALRSAAQMISYEVSIGLVIVTVV 169 (348)
Q Consensus 90 i~~~~~~~~~~~iP~~~~~~~~~~~~~ll~~~~l~sl~~~~i~l~G~~S~s~ys~iG~~R~~~q~isyE~~l~l~i~~~~ 169 (348)
T Consensus 83 l~~~~~~~~~~~~p~~~--~~~~~~~~ll~~l~l~sl~~~~ill~GwsSnskys~lG~~R~~aq~ISYEv~l~l~~l~~~ 160 (324)
T MTH00134 83 LALTLALTLWAPMPMPY--PVTDLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLSVI 160 (324)
T ss_pred HHHHHHHHHHHHHCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999960444--2213119999999999889999898530469974411298999899876998999999999
Q ss_pred HHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCHH
Q ss_conf 98237898999998510000221111244666999999899999999768754301003576088889875430232011
Q gi|254780860|r 170 LCAGSLNLTDIVYSQKSGLGTFLGFPPSMLDWYWLALFPMFVVFFISLLAETNRPPFDLSEAESELVAGYMVEYSSTPYL 249 (348)
Q Consensus 170 l~~gs~~~~~iv~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~lae~~R~PFD~~EaEsELv~G~~tEYsG~~~~ 249 (348)
T Consensus 161 l~~gs~sl~~~~~~q~~-------------~~~~~~~~~l~~i~~i~~laE~~R~PFD~~EaEsELVsG~~tEYsG~~fa 227 (324)
T MTH00134 161 IFTGGFTLQTFNTAQES-------------IWLLLPAWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFA 227 (324)
T ss_pred HHHCCCCHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCHHHH
T ss_conf 99648867899999988-------------99999999999999999999808999997632599975366766348789
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 58899999999999999973236554312236666568999999999999999999974101254999988542789999
Q gi|254780860|r 250 LFMLAEYSTIVLMCTLASILFLGGWLPPFDISLFKSIPGFFWLVFKTLGLFFMVAMVKAFVPRYRYDQLMRLGWKVFLPL 329 (348)
Q Consensus 250 l~~l~ey~~~~~~s~l~~~lFlGg~~~p~~~~~~~~l~~~~~~~~k~~~~~~~~i~ir~~~pR~R~Dq~~~~~Wk~llpl 329 (348)
T Consensus 228 l~fl~EY~~i~~~s~l~~~lFlGg~~~p~~~-----~~~~~~~~~k~~~~~~~~i~vR~~~pR~R~Dqlm~~~Wk~llPl 302 (324)
T MTH00134 228 LFFLAEYANILLMNTLSAILFLGASHIPTLP-----ELTTINLMTKAALLSVVFLWVRASYPRFRYDQLMHLVWKNFLPL 302 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999981633000105-----78999999999999999999998255402999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999763
Q gi|254780860|r 330 SFAMVLIVSFFLKIYTLI 347 (348)
Q Consensus 330 ~l~~~~~~~~~~~~~~~~ 347 (348)
T Consensus 303 ~l~~l~~~~~l~~~f~~~ 320 (324)
T MTH00134 303 TLALVIWHLALPIAFAGL 320 (324)
T ss_pred HHHHHHHHHHHHHHHCCC
T ss_conf 999999999999997779