HHsearch alignment for GI: 254780860 and conserved domain: MTH00134

>MTH00134 ND1 NADH dehydrogenase subunit 1; Provisional.
Probab=100.00  E-value=0  Score=642.90  Aligned_cols=318  Identities=46%  Similarity=0.784  Sum_probs=297.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH
Q ss_conf             99999999999999999999999999999999999727899857445318889999999863054645354038985898
Q gi|254780860|r   10 VPLFFMAIKSIVFLVGLLIFIAYVLLMDRKVWAAVQLRRGPNVVGPWGLLQSFADFLKFVFKEPIIPSKSNKILFLLAPL   89 (348)
Q Consensus        10 ~~~~~~~i~~i~~~i~~l~~~~f~~~~eRKi~A~iQ~R~GP~~vg~~GilQp~~D~~KL~~Ke~i~p~~~~~~~f~~~P~   89 (348)
T Consensus         3 ~~~i~~~i~~l~~~i~vl~~vaf~tl~ERKila~~Q~R~GPn~vg~~GllQp~aD~iKLl~Ke~i~p~~~~~~~f~~~P~   82 (324)
T MTH00134          3 STLITHIINPLAYIVPVLLAVAFLTLIERKVLGYMQLRKGPNIVGPYGLLQPIADGVKLFIKEPVRPSTSSPFLFLATPM   82 (324)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf             99999999999999999999999999999999986557180945755113888999999881887600238999999999


Q ss_pred             HHHHHHHHHHHCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999986653187855235640505789999999999999999875124432101233443101367876689999999
Q gi|254780860|r   90 VSVILSLSAWAVVPVADGWIIADINVGILYILAISSLEIYGIIIGGWASNSKYAFLGALRSAAQMISYEVSIGLVIVTVV  169 (348)
Q Consensus        90 i~~~~~~~~~~~iP~~~~~~~~~~~~~ll~~~~l~sl~~~~i~l~G~~S~s~ys~iG~~R~~~q~isyE~~l~l~i~~~~  169 (348)
T Consensus        83 l~~~~~~~~~~~~p~~~--~~~~~~~~ll~~l~l~sl~~~~ill~GwsSnskys~lG~~R~~aq~ISYEv~l~l~~l~~~  160 (324)
T MTH00134         83 LALTLALTLWAPMPMPY--PVTDLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLSVI  160 (324)
T ss_pred             HHHHHHHHHHHHHCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999960444--2213119999999999889999898530469974411298999899876998999999999


Q ss_pred             HHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCHH
Q ss_conf             98237898999998510000221111244666999999899999999768754301003576088889875430232011
Q gi|254780860|r  170 LCAGSLNLTDIVYSQKSGLGTFLGFPPSMLDWYWLALFPMFVVFFISLLAETNRPPFDLSEAESELVAGYMVEYSSTPYL  249 (348)
Q Consensus       170 l~~gs~~~~~iv~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~lae~~R~PFD~~EaEsELv~G~~tEYsG~~~~  249 (348)
T Consensus       161 l~~gs~sl~~~~~~q~~-------------~~~~~~~~~l~~i~~i~~laE~~R~PFD~~EaEsELVsG~~tEYsG~~fa  227 (324)
T MTH00134        161 IFTGGFTLQTFNTAQES-------------IWLLLPAWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFA  227 (324)
T ss_pred             HHHCCCCHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCHHHH
T ss_conf             99648867899999988-------------99999999999999999999808999997632599975366766348789


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             58899999999999999973236554312236666568999999999999999999974101254999988542789999
Q gi|254780860|r  250 LFMLAEYSTIVLMCTLASILFLGGWLPPFDISLFKSIPGFFWLVFKTLGLFFMVAMVKAFVPRYRYDQLMRLGWKVFLPL  329 (348)
Q Consensus       250 l~~l~ey~~~~~~s~l~~~lFlGg~~~p~~~~~~~~l~~~~~~~~k~~~~~~~~i~ir~~~pR~R~Dq~~~~~Wk~llpl  329 (348)
T Consensus       228 l~fl~EY~~i~~~s~l~~~lFlGg~~~p~~~-----~~~~~~~~~k~~~~~~~~i~vR~~~pR~R~Dqlm~~~Wk~llPl  302 (324)
T MTH00134        228 LFFLAEYANILLMNTLSAILFLGASHIPTLP-----ELTTINLMTKAALLSVVFLWVRASYPRFRYDQLMHLVWKNFLPL  302 (324)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999999999999981633000105-----78999999999999999999998255402999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q ss_conf             999999999999999763
Q gi|254780860|r  330 SFAMVLIVSFFLKIYTLI  347 (348)
Q Consensus       330 ~l~~~~~~~~~~~~~~~~  347 (348)
T Consensus       303 ~l~~l~~~~~l~~~f~~~  320 (324)
T MTH00134        303 TLALVIWHLALPIAFAGL  320 (324)
T ss_pred             HHHHHHHHHHHHHHHCCC
T ss_conf             999999999999997779