HHsearch alignment for GI: 254780860 and conserved domain: MTH00195

>MTH00195 ND1 NADH dehydrogenase subunit 1; Provisional.
Probab=100.00  E-value=0  Score=639.62  Aligned_cols=305  Identities=44%  Similarity=0.800  Sum_probs=289.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
Q ss_conf             99999999999999999999999999999999972789985744531888999999986305464535403898589899
Q gi|254780860|r   12 LFFMAIKSIVFLVGLLIFIAYVLLMDRKVWAAVQLRRGPNVVGPWGLLQSFADFLKFVFKEPIIPSKSNKILFLLAPLVS   91 (348)
Q Consensus        12 ~~~~~i~~i~~~i~~l~~~~f~~~~eRKi~A~iQ~R~GP~~vg~~GilQp~~D~~KL~~Ke~i~p~~~~~~~f~~~P~i~   91 (348)
T Consensus         1 m~~~~i~~l~~~i~~ll~vaf~tl~ERKi~a~~Q~R~GP~~vg~~GllQp~~D~~KLl~Ke~i~p~~~~~~~f~~aP~i~   80 (307)
T MTH00195          1 MILSIIYFLIQIVPILLAVAFFTLLERKVLGYIQLRKGPNKVGPYGLLQPIADAVKLLLKELVSPSNSNKWGFLLAPILG   80 (307)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
T ss_conf             96999999999999999999999999999999974808085674464699999999988088276653178999989999


Q ss_pred             HHHHHHHHHCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99998665318785523564050578999999999999999987512443210123344310136787668999999998
Q gi|254780860|r   92 VILSLSAWAVVPVADGWIIADINVGILYILAISSLEIYGIIIGGWASNSKYAFLGALRSAAQMISYEVSIGLVIVTVVLC  171 (348)
Q Consensus        92 ~~~~~~~~~~iP~~~~~~~~~~~~~ll~~~~l~sl~~~~i~l~G~~S~s~ys~iG~~R~~~q~isyE~~l~l~i~~~~l~  171 (348)
T Consensus        81 ~~~~~~~~~~~p~~~~--~~~~~~~ll~~l~l~sl~~~~~~l~GwsS~skys~lG~~R~~~q~iSYEi~l~l~~l~~~~~  158 (307)
T MTH00195         81 LVLALIFWVNIPSPFG--FSSLNYGVLFFLCVSSLSVYSTLMSGWASNSKYALLGAIRAVAQTISYEVSMGLIILCPLLL  158 (307)
T ss_pred             HHHHHHHHHCCCCCCC--CEECCHHHHHHHHHHHHHHHHHCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999988850246755--40134348999998500455302147767882214147799988767768699999999999


Q ss_pred             HCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCHHHH
Q ss_conf             23789899999851000022111124466699999989999999976875430100357608888987543023201158
Q gi|254780860|r  172 AGSLNLTDIVYSQKSGLGTFLGFPPSMLDWYWLALFPMFVVFFISLLAETNRPPFDLSEAESELVAGYMVEYSSTPYLLF  251 (348)
Q Consensus       172 ~gs~~~~~iv~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~lae~~R~PFD~~EaEsELv~G~~tEYsG~~~~l~  251 (348)
T Consensus       159 ~gs~~l~~i~~~q~~-------------~~~~~~~~~~~~i~~i~~laE~~R~PFDl~EaEsELVsG~~tEYsG~~f~l~  225 (307)
T MTH00195        159 AGSFDFEIMLISQSF-------------FWFVLLFPPISFMWYVSTLAETNRAPFDFAEGESELVSGFNVEYGGGPFALI  225 (307)
T ss_pred             HCCCCHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEHHHHCCHHHHHH
T ss_conf             378879999999999-------------9999998789999999999996899999987876704556799735899999


Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             89999999999999997323655431223666656899999999999999999997410125499998854278999999
Q gi|254780860|r  252 MLAEYSTIVLMCTLASILFLGGWLPPFDISLFKSIPGFFWLVFKTLGLFFMVAMVKAFVPRYRYDQLMRLGWKVFLPLSF  331 (348)
Q Consensus       252 ~l~ey~~~~~~s~l~~~lFlGg~~~p~~~~~~~~l~~~~~~~~k~~~~~~~~i~ir~~~pR~R~Dq~~~~~Wk~llpl~l  331 (348)
T Consensus       226 fl~Ey~~~~~~s~l~~~lFlGg~~~~-------------~~~~k~~~~~~~~i~vR~~~PR~R~Dqlm~~~Wk~llPl~l  292 (307)
T MTH00195        226 FMAEYMNIIFMSVLTAILFFGGGSTI-------------MLWVKSLFVSFVFLWVRGSLPRFRYDQLMGLTWKCYLPLVL  292 (307)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCHHH-------------HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999985422789-------------99999999999999999727316399989988899999999


Q ss_pred             HHHHHHHHHHHHH
Q ss_conf             9999999999999
Q gi|254780860|r  332 AMVLIVSFFLKIY  344 (348)
Q Consensus       332 ~~~~~~~~~~~~~  344 (348)
T Consensus       293 ~~l~~~~~l~~~~  305 (307)
T MTH00195        293 SLLIVLIVLMFAL  305 (307)
T ss_pred             HHHHHHHHHHHHH
T ss_conf             9999999999980