HHsearch alignment for GI: 254780860 and conserved domain: MTH00195
>MTH00195 ND1 NADH dehydrogenase subunit 1; Provisional.
Probab=100.00 E-value=0 Score=639.62 Aligned_cols=305 Identities=44% Similarity=0.800 Sum_probs=289.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999972789985744531888999999986305464535403898589899
Q gi|254780860|r 12 LFFMAIKSIVFLVGLLIFIAYVLLMDRKVWAAVQLRRGPNVVGPWGLLQSFADFLKFVFKEPIIPSKSNKILFLLAPLVS 91 (348)
Q Consensus 12 ~~~~~i~~i~~~i~~l~~~~f~~~~eRKi~A~iQ~R~GP~~vg~~GilQp~~D~~KL~~Ke~i~p~~~~~~~f~~~P~i~ 91 (348)
T Consensus 1 m~~~~i~~l~~~i~~ll~vaf~tl~ERKi~a~~Q~R~GP~~vg~~GllQp~~D~~KLl~Ke~i~p~~~~~~~f~~aP~i~ 80 (307)
T MTH00195 1 MILSIIYFLIQIVPILLAVAFFTLLERKVLGYIQLRKGPNKVGPYGLLQPIADAVKLLLKELVSPSNSNKWGFLLAPILG 80 (307)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
T ss_conf 96999999999999999999999999999999974808085674464699999999988088276653178999989999
Q ss_pred HHHHHHHHHCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99998665318785523564050578999999999999999987512443210123344310136787668999999998
Q gi|254780860|r 92 VILSLSAWAVVPVADGWIIADINVGILYILAISSLEIYGIIIGGWASNSKYAFLGALRSAAQMISYEVSIGLVIVTVVLC 171 (348)
Q Consensus 92 ~~~~~~~~~~iP~~~~~~~~~~~~~ll~~~~l~sl~~~~i~l~G~~S~s~ys~iG~~R~~~q~isyE~~l~l~i~~~~l~ 171 (348)
T Consensus 81 ~~~~~~~~~~~p~~~~--~~~~~~~ll~~l~l~sl~~~~~~l~GwsS~skys~lG~~R~~~q~iSYEi~l~l~~l~~~~~ 158 (307)
T MTH00195 81 LVLALIFWVNIPSPFG--FSSLNYGVLFFLCVSSLSVYSTLMSGWASNSKYALLGAIRAVAQTISYEVSMGLIILCPLLL 158 (307)
T ss_pred HHHHHHHHHCCCCCCC--CEECCHHHHHHHHHHHHHHHHHCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999988850246755--40134348999998500455302147767882214147799988767768699999999999
Q ss_pred HCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCHHHH
Q ss_conf 23789899999851000022111124466699999989999999976875430100357608888987543023201158
Q gi|254780860|r 172 AGSLNLTDIVYSQKSGLGTFLGFPPSMLDWYWLALFPMFVVFFISLLAETNRPPFDLSEAESELVAGYMVEYSSTPYLLF 251 (348)
Q Consensus 172 ~gs~~~~~iv~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~lae~~R~PFD~~EaEsELv~G~~tEYsG~~~~l~ 251 (348)
T Consensus 159 ~gs~~l~~i~~~q~~-------------~~~~~~~~~~~~i~~i~~laE~~R~PFDl~EaEsELVsG~~tEYsG~~f~l~ 225 (307)
T MTH00195 159 AGSFDFEIMLISQSF-------------FWFVLLFPPISFMWYVSTLAETNRAPFDFAEGESELVSGFNVEYGGGPFALI 225 (307)
T ss_pred HCCCCHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEHHHHCCHHHHHH
T ss_conf 378879999999999-------------9999998789999999999996899999987876704556799735899999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 89999999999999997323655431223666656899999999999999999997410125499998854278999999
Q gi|254780860|r 252 MLAEYSTIVLMCTLASILFLGGWLPPFDISLFKSIPGFFWLVFKTLGLFFMVAMVKAFVPRYRYDQLMRLGWKVFLPLSF 331 (348)
Q Consensus 252 ~l~ey~~~~~~s~l~~~lFlGg~~~p~~~~~~~~l~~~~~~~~k~~~~~~~~i~ir~~~pR~R~Dq~~~~~Wk~llpl~l 331 (348)
T Consensus 226 fl~Ey~~~~~~s~l~~~lFlGg~~~~-------------~~~~k~~~~~~~~i~vR~~~PR~R~Dqlm~~~Wk~llPl~l 292 (307)
T MTH00195 226 FMAEYMNIIFMSVLTAILFFGGGSTI-------------MLWVKSLFVSFVFLWVRGSLPRFRYDQLMGLTWKCYLPLVL 292 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHH-------------HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999985422789-------------99999999999999999727316399989988899999999
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9999999999999
Q gi|254780860|r 332 AMVLIVSFFLKIY 344 (348)
Q Consensus 332 ~~~~~~~~~~~~~ 344 (348)
T Consensus 293 ~~l~~~~~l~~~~ 305 (307)
T MTH00195 293 SLLIVLIVLMFAL 305 (307)
T ss_pred HHHHHHHHHHHHH
T ss_conf 9999999999980