HHsearch alignment for GI: 254780860 and conserved domain: MTH00218
>MTH00218 ND1 NADH dehydrogenase subunit 1; Provisional.
Probab=100.00 E-value=0 Score=642.42 Aligned_cols=307 Identities=49% Similarity=0.864 Sum_probs=291.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999972789985744531888999999986305464535403898589899
Q gi|254780860|r 12 LFFMAIKSIVFLVGLLIFIAYVLLMDRKVWAAVQLRRGPNVVGPWGLLQSFADFLKFVFKEPIIPSKSNKILFLLAPLVS 91 (348)
Q Consensus 12 ~~~~~i~~i~~~i~~l~~~~f~~~~eRKi~A~iQ~R~GP~~vg~~GilQp~~D~~KL~~Ke~i~p~~~~~~~f~~~P~i~ 91 (348)
T Consensus 2 ~~~~~~~~l~~~i~vl~~vaf~tl~ERKila~~Q~R~GPn~vg~~GllQp~aD~~KLl~Ke~i~p~~~~~~~f~~aP~l~ 81 (314)
T MTH00218 2 MMLSIINLLLYIIPVLLAVAFLTLLERKVLGYMQLRKGPNVVGPYGLLQPIADGVKLFIKEPVRPSGSSPFLFLLAPILA 81 (314)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
T ss_conf 79999999999999999999999999999999865808086786433599999999988378775522599999999999
Q ss_pred HHHHHHHHHCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99998665318785523564050578999999999999999987512443210123344310136787668999999998
Q gi|254780860|r 92 VILSLSAWAVVPVADGWIIADINVGILYILAISSLEIYGIIIGGWASNSKYAFLGALRSAAQMISYEVSIGLVIVTVVLC 171 (348)
Q Consensus 92 ~~~~~~~~~~iP~~~~~~~~~~~~~ll~~~~l~sl~~~~i~l~G~~S~s~ys~iG~~R~~~q~isyE~~l~l~i~~~~l~ 171 (348)
T Consensus 82 ~~~~~~~~~~iP~~~~--~~~~~~~ll~~l~l~sl~~~~~~l~GwsSnSkYs~iG~~R~~aq~iSYEv~l~l~~l~~~~~ 159 (314)
T MTH00218 82 LTLALLLWMPLPLPHS--FINLNLGLLFILAISSLSVYSILGSGWASNSKYALMGALRAVAQTISYEVSLGLIILSLVIL 159 (314)
T ss_pred HHHHHHHHHHCCCCCC--HHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999974256631--11134228899999757899999874256897656412089999956768999999999998
Q ss_pred HCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCHHHH
Q ss_conf 23789899999851000022111124466699999989999999976875430100357608888987543023201158
Q gi|254780860|r 172 AGSLNLTDIVYSQKSGLGTFLGFPPSMLDWYWLALFPMFVVFFISLLAETNRPPFDLSEAESELVAGYMVEYSSTPYLLF 251 (348)
Q Consensus 172 ~gs~~~~~iv~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~lae~~R~PFD~~EaEsELv~G~~tEYsG~~~~l~ 251 (348)
T Consensus 160 ~gs~~l~~i~~~q~~-------------~~~~~~~~~~~i~~~i~~laE~nR~PFDl~EaEsELVsG~~tEYsG~~fal~ 226 (314)
T MTH00218 160 AGGFTLSTFNYYQET-------------IWLLGPFWPLAVMWFISTLAETNRAPFDLTEGESELVSGFNVEYSGGPFALF 226 (314)
T ss_pred CCCCCHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEHHHHCCHHHHHH
T ss_conf 079867999998635-------------9999878899999999999997889999887672312123999645377999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 89999999999999997323655431223666656899999999999999999997410125499998854278999999
Q gi|254780860|r 252 MLAEYSTIVLMCTLASILFLGGWLPPFDISLFKSIPGFFWLVFKTLGLFFMVAMVKAFVPRYRYDQLMRLGWKVFLPLSF 331 (348)
Q Consensus 252 ~l~ey~~~~~~s~l~~~lFlGg~~~p~~~~~~~~l~~~~~~~~k~~~~~~~~i~ir~~~pR~R~Dq~~~~~Wk~llpl~l 331 (348)
T Consensus 227 fl~EY~~i~~~s~l~~~lFlgg~~~------------~~~~~~k~~~~~~~~i~iR~~~PR~R~Dqlm~~~Wk~llPl~l 294 (314)
T MTH00218 227 FLAEYMNILFMNTLSVILFLGSSLT------------LLSLMLKATLLVFLFLWVRASYPRFRYDQLMHLAWKNFLPLVL 294 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHH------------HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999674276------------8999999999999999999637316499999988899999999
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 99999999999997
Q gi|254780860|r 332 AMVLIVSFFLKIYT 345 (348)
Q Consensus 332 ~~~~~~~~~~~~~~ 345 (348)
T Consensus 295 ~~l~~~~~l~l~~~ 308 (314)
T MTH00218 295 ALLLLHLSLPLAFG 308 (314)
T ss_pred HHHHHHHHHHHHHC
T ss_conf 99999999999977