HHsearch alignment for GI: 254780860 and conserved domain: PRK06076

>PRK06076 NADH dehydrogenase subunit H; Provisional.
Probab=100.00  E-value=0  Score=663.38  Aligned_cols=328  Identities=56%  Similarity=0.969  Sum_probs=312.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHH
Q ss_conf             89999999999999999999999999999999999999727899857445318889999999863054645354038985
Q gi|254780860|r    7 DFFVPLFFMAIKSIVFLVGLLIFIAYVLLMDRKVWAAVQLRRGPNVVGPWGLLQSFADFLKFVFKEPIIPSKSNKILFLL   86 (348)
Q Consensus         7 ~~~~~~~~~~i~~i~~~i~~l~~~~f~~~~eRKi~A~iQ~R~GP~~vg~~GilQp~~D~~KL~~Ke~i~p~~~~~~~f~~   86 (348)
T Consensus         7 ~~~~~~~~~~i~~~~~~l~~ll~vaf~tl~ERKi~a~~Q~R~GP~~vg~~GllQp~~D~~KLl~Ke~~~p~~~~~~~f~~   86 (335)
T PRK06076          7 PGLAPILLTLLKAVVILVVVLLCVAFLIWAERKVLARMQLRIGPNRVGPFGLLQLVADGIKLFFKEDIIPKGADKFLFLL   86 (335)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
T ss_conf             86329999999999999999999999999999999971368080926755021899999999885777620248999999


Q ss_pred             HHHHHHHHHHHHHHCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             89899999986653187855235640505789999999999999999875124432101233443101367876689999
Q gi|254780860|r   87 APLVSVILSLSAWAVVPVADGWIIADINVGILYILAISSLEIYGIIIGGWASNSKYAFLGALRSAAQMISYEVSIGLVIV  166 (348)
Q Consensus        87 ~P~i~~~~~~~~~~~iP~~~~~~~~~~~~~ll~~~~l~sl~~~~i~l~G~~S~s~ys~iG~~R~~~q~isyE~~l~l~i~  166 (348)
T Consensus        87 ~P~l~~~~~~~~~~~iP~~~~~~~~~~~~~ll~~l~l~sl~~~~~~l~GwsS~s~Ys~iG~~R~~~q~isyEv~l~l~~~  166 (335)
T PRK06076         87 APVIAFIPAFLAWAVIPFGPGLVIADINVGILFILAISSLGVYGVILAGWASNNKYALLGALRAAAQMISYEVPLGLSLL  166 (335)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999986256651136557899999999989998887132069963235999999997878899999999


Q ss_pred             HHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf             99998237898999998510000221111244666999999899999999768754301003576088889875430232
Q gi|254780860|r  167 TVVLCAGSLNLTDIVYSQKSGLGTFLGFPPSMLDWYWLALFPMFVVFFISLLAETNRPPFDLSEAESELVAGYMVEYSST  246 (348)
Q Consensus       167 ~~~l~~gs~~~~~iv~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~lae~~R~PFD~~EaEsELv~G~~tEYsG~  246 (348)
T Consensus       167 ~~~l~~gs~~~~~i~~~q~~~~----------~~~~~~~~~~~~i~~~i~~lae~~R~PFD~~EaEsELVsG~~tEYsG~  236 (335)
T PRK06076        167 AVVMLAGSLNLSDIVNAQSGGL----------LSWNILPQPPGFVVFFIAAVAETNRHPFDLPEAESELVAGYHTEYSGM  236 (335)
T ss_pred             HHHHHHCCCCHHHHHHHHHCCC----------CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCH
T ss_conf             9999964887999999885220----------189999999999999999999838999987756478876597786438


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             01158899999999999999973236554312236666568999999999999999999974101254999988542789
Q gi|254780860|r  247 PYLLFMLAEYSTIVLMCTLASILFLGGWLPPFDISLFKSIPGFFWLVFKTLGLFFMVAMVKAFVPRYRYDQLMRLGWKVF  326 (348)
Q Consensus       247 ~~~l~~l~ey~~~~~~s~l~~~lFlGg~~~p~~~~~~~~l~~~~~~~~k~~~~~~~~i~ir~~~pR~R~Dq~~~~~Wk~l  326 (348)
T Consensus       237 ~fal~flaey~~~~~~s~l~~~lFlGG~~~~~~--~~~~~~~~~~~~~k~~~v~~~~i~iR~~~pR~R~Dqlm~~~Wk~~  314 (335)
T PRK06076        237 KFGLFFLGEYINMILMSALASTLFLGGWLPPWP--FLGWIPGAIWFVLKVFFFVFLFIWLRATLPRYRYDQLMRLGWKVL  314 (335)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf             899999999999999999999998477755421--111208999999999999999999997362041999999988999


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999976
Q gi|254780860|r  327 LPLSFAMVLIVSFFLKIYTL  346 (348)
Q Consensus       327 lpl~l~~~~~~~~~~~~~~~  346 (348)
T Consensus       315 Lpl~l~~lil~~~~~l~~~~  334 (335)
T PRK06076        315 LPLSLVNLLVTAAVLLLFPQ  334 (335)
T ss_pred             HHHHHHHHHHHHHHHHEECC
T ss_conf             99999999999999950078