HHsearch alignment for GI: 254780860 and conserved domain: PRK06076
>PRK06076 NADH dehydrogenase subunit H; Provisional.
Probab=100.00 E-value=0 Score=663.38 Aligned_cols=328 Identities=56% Similarity=0.969 Sum_probs=312.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHH
Q ss_conf 89999999999999999999999999999999999999727899857445318889999999863054645354038985
Q gi|254780860|r 7 DFFVPLFFMAIKSIVFLVGLLIFIAYVLLMDRKVWAAVQLRRGPNVVGPWGLLQSFADFLKFVFKEPIIPSKSNKILFLL 86 (348)
Q Consensus 7 ~~~~~~~~~~i~~i~~~i~~l~~~~f~~~~eRKi~A~iQ~R~GP~~vg~~GilQp~~D~~KL~~Ke~i~p~~~~~~~f~~ 86 (348)
T Consensus 7 ~~~~~~~~~~i~~~~~~l~~ll~vaf~tl~ERKi~a~~Q~R~GP~~vg~~GllQp~~D~~KLl~Ke~~~p~~~~~~~f~~ 86 (335)
T PRK06076 7 PGLAPILLTLLKAVVILVVVLLCVAFLIWAERKVLARMQLRIGPNRVGPFGLLQLVADGIKLFFKEDIIPKGADKFLFLL 86 (335)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
T ss_conf 86329999999999999999999999999999999971368080926755021899999999885777620248999999
Q ss_pred HHHHHHHHHHHHHHCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 89899999986653187855235640505789999999999999999875124432101233443101367876689999
Q gi|254780860|r 87 APLVSVILSLSAWAVVPVADGWIIADINVGILYILAISSLEIYGIIIGGWASNSKYAFLGALRSAAQMISYEVSIGLVIV 166 (348)
Q Consensus 87 ~P~i~~~~~~~~~~~iP~~~~~~~~~~~~~ll~~~~l~sl~~~~i~l~G~~S~s~ys~iG~~R~~~q~isyE~~l~l~i~ 166 (348)
T Consensus 87 ~P~l~~~~~~~~~~~iP~~~~~~~~~~~~~ll~~l~l~sl~~~~~~l~GwsS~s~Ys~iG~~R~~~q~isyEv~l~l~~~ 166 (335)
T PRK06076 87 APVIAFIPAFLAWAVIPFGPGLVIADINVGILFILAISSLGVYGVILAGWASNNKYALLGALRAAAQMISYEVPLGLSLL 166 (335)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999986256651136557899999999989998887132069963235999999997878899999999
Q ss_pred HHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 99998237898999998510000221111244666999999899999999768754301003576088889875430232
Q gi|254780860|r 167 TVVLCAGSLNLTDIVYSQKSGLGTFLGFPPSMLDWYWLALFPMFVVFFISLLAETNRPPFDLSEAESELVAGYMVEYSST 246 (348)
Q Consensus 167 ~~~l~~gs~~~~~iv~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~lae~~R~PFD~~EaEsELv~G~~tEYsG~ 246 (348)
T Consensus 167 ~~~l~~gs~~~~~i~~~q~~~~----------~~~~~~~~~~~~i~~~i~~lae~~R~PFD~~EaEsELVsG~~tEYsG~ 236 (335)
T PRK06076 167 AVVMLAGSLNLSDIVNAQSGGL----------LSWNILPQPPGFVVFFIAAVAETNRHPFDLPEAESELVAGYHTEYSGM 236 (335)
T ss_pred HHHHHHCCCCHHHHHHHHHCCC----------CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCH
T ss_conf 9999964887999999885220----------189999999999999999999838999987756478876597786438
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 01158899999999999999973236554312236666568999999999999999999974101254999988542789
Q gi|254780860|r 247 PYLLFMLAEYSTIVLMCTLASILFLGGWLPPFDISLFKSIPGFFWLVFKTLGLFFMVAMVKAFVPRYRYDQLMRLGWKVF 326 (348)
Q Consensus 247 ~~~l~~l~ey~~~~~~s~l~~~lFlGg~~~p~~~~~~~~l~~~~~~~~k~~~~~~~~i~ir~~~pR~R~Dq~~~~~Wk~l 326 (348)
T Consensus 237 ~fal~flaey~~~~~~s~l~~~lFlGG~~~~~~--~~~~~~~~~~~~~k~~~v~~~~i~iR~~~pR~R~Dqlm~~~Wk~~ 314 (335)
T PRK06076 237 KFGLFFLGEYINMILMSALASTLFLGGWLPPWP--FLGWIPGAIWFVLKVFFFVFLFIWLRATLPRYRYDQLMRLGWKVL 314 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 899999999999999999999998477755421--111208999999999999999999997362041999999988999
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999976
Q gi|254780860|r 327 LPLSFAMVLIVSFFLKIYTL 346 (348)
Q Consensus 327 lpl~l~~~~~~~~~~~~~~~ 346 (348)
T Consensus 315 Lpl~l~~lil~~~~~l~~~~ 334 (335)
T PRK06076 315 LPLSLVNLLVTAAVLLLFPQ 334 (335)
T ss_pred HHHHHHHHHHHHHHHHEECC
T ss_conf 99999999999999950078