HHsearch alignment for GI: 254780860 and conserved domain: TIGR01972
>TIGR01972 NDH_I_M proton-translocating NADH-quinone oxidoreductase, chain M; InterPro: IPR010227 This entry describes the 13th (based on Escherichia coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex.; GO: 0008137 NADH dehydrogenase (ubiquinone) activity, 0042773 ATP synthesis coupled electron transport.
Probab=93.44 E-value=0.54 Score=25.01 Aligned_cols=136 Identities=20% Similarity=0.385 Sum_probs=88.3
Q ss_pred HCCHHHHHHHHHHHHHHHHHHHHHHH-----CCCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
Q ss_conf 05057899999999999999998751-----2443---------21012334431013678766899999999823----
Q gi|254780860|r 112 DINVGILYILAISSLEIYGIIIGGWA-----SNSK---------YAFLGALRSAAQMISYEVSIGLVIVTVVLCAG---- 173 (348)
Q Consensus 112 ~~~~~ll~~~~l~sl~~~~i~l~G~~-----S~s~---------ys~iG~~R~~~q~isyE~~l~l~i~~~~l~~g---- 173 (348)
T Consensus 139 A~D~~LFY~FwE~~LiPmyllIg~WGdka~~g~~R~yAA~KFfLYTl~G-----------SvlML~a~l~l~~~~g~~~~ 207 (532)
T TIGR01972 139 ALDLLLFYVFWEAMLIPMYLLIGVWGDKAEAGPNRIYAAMKFFLYTLAG-----------SVLMLLAILGLYFLGGTQLL 207 (532)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHCCCCE
T ss_conf 9989999999999998899998641100136465237889999999999-----------99999999999998234111
Q ss_pred --CCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--CCCCCHH-------HHHHHHHH
Q ss_conf --789899999851000022111124466699999989999999976875430100--3576088-------88987543
Q gi|254780860|r 174 --SLNLTDIVYSQKSGLGTFLGFPPSMLDWYWLALFPMFVVFFISLLAETNRPPFD--LSEAESE-------LVAGYMVE 242 (348)
Q Consensus 174 --s~~~~~iv~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~lae~~R~PFD--~~EaEsE-------Lv~G~~tE 242 (348)
T Consensus 208 ~~tF~l~~l~~~~~~~~--------------~~~q~~Lf~aFf~aFAvK~PlfPlHTWLPDAH~~Apt~gSV~LaGvLlK 273 (532)
T TIGR01972 208 ILTFDLAELLNQPVNLP--------------LSVQTWLFLAFFIAFAVKVPLFPLHTWLPDAHVEAPTAGSVILAGVLLK 273 (532)
T ss_pred EECCCHHHHHCCCCCCH--------------HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHCCCCHHHHHHHHHHHHH
T ss_conf 21034288740213641--------------9999999999999855224776653343203102774689999999998
Q ss_pred HCCCCHHHHHHH--------HHHHHHHHHHHHHHHHCCCC
Q ss_conf 023201158899--------99999999999997323655
Q gi|254780860|r 243 YSSTPYLLFMLA--------EYSTIVLMCTLASILFLGGW 274 (348)
Q Consensus 243 YsG~~~~l~~l~--------ey~~~~~~s~l~~~lFlGg~ 274 (348)
T Consensus 274 ~G~--YGflRf~LpLfPdas~~f~p~~~~L~~~~IiYgal 311 (532)
T TIGR01972 274 MGT--YGFLRFNLPLFPDASLYFAPVLAALAVIAIIYGAL 311 (532)
T ss_pred HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 888--99999876544999999999999999999999999