Query gi|254780860|ref|YP_003065273.1| NADH dehydrogenase subunit H [Candidatus Liberibacter asiaticus str. psy62] Match_columns 348 No_of_seqs 123 out of 2932 Neff 6.5 Searched_HMMs 39220 Date Mon May 30 03:24:33 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780860.hhm -d /home/congqian_1/database/cdd/Cdd.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 CHL00032 ndhA NADH dehydrogena 100.0 0 0 681.6 34.9 325 9-342 19-356 (359) 2 COG1005 NuoH NADH:ubiquinone o 100.0 0 0 677.3 32.2 327 4-344 3-330 (332) 3 MTH00029 ND1 NADH dehydrogenas 100.0 0 0 672.2 34.8 323 10-345 4-337 (343) 4 MTH00216 ND1 NADH dehydrogenas 100.0 0 0 664.1 34.6 319 10-344 3-321 (327) 5 PRK06076 NADH dehydrogenase su 100.0 0 0 663.4 32.6 328 7-346 7-334 (335) 6 MTH00017 consensus 100.0 0 0 663.5 32.5 320 10-345 3-322 (327) 7 MTH00054 ND1 NADH dehydrogenas 100.0 0 0 657.5 31.4 313 15-345 4-316 (321) 8 MTH00040 ND1 NADH dehydrogenas 100.0 0 0 654.6 33.0 318 10-346 1-318 (323) 9 MTH00111 ND1 NADH dehydrogenas 100.0 0 0 650.8 34.7 316 10-345 2-317 (323) 10 MTH00071 ND1 NADH dehydrogenas 100.0 0 0 646.7 35.5 315 10-344 2-316 (322) 11 MTH00104 ND1 NADH dehydrogenas 100.0 0 0 648.2 33.6 312 16-347 3-314 (318) 12 MTH00134 ND1 NADH dehydrogenas 100.0 0 0 642.9 34.7 318 10-347 3-320 (324) 13 pfam00146 NADHdh NADH dehydrog 100.0 0 0 648.2 29.9 307 15-341 2-308 (309) 14 MTH00218 ND1 NADH dehydrogenas 100.0 0 0 642.4 32.2 307 12-345 2-308 (314) 15 MTH00143 ND1 NADH dehydrogenas 100.0 0 0 642.0 31.1 304 14-340 2-305 (306) 16 MTH00193 ND1 NADH dehydrogenas 100.0 0 0 635.9 33.0 303 12-341 1-303 (306) 17 MTH00010 ND1 NADH dehydrogenas 100.0 0 0 635.4 32.9 306 15-344 5-310 (311) 18 MTH00195 ND1 NADH dehydrogenas 100.0 0 0 639.6 28.8 305 12-344 1-305 (307) 19 MTH00159 consensus 100.0 0 0 635.0 32.4 301 15-342 1-301 (307) 20 MTH00058 ND1 NADH dehydrogenas 100.0 0 0 622.7 28.8 292 13-337 3-294 (296) 21 KOG4770 consensus 100.0 0 0 606.9 28.4 309 13-341 3-311 (315) 22 MTH00090 ND1 NADH dehydrogenas 100.0 0 0 604.6 30.3 283 18-341 2-284 (285) 23 COG0650 HyfC Formate hydrogenl 100.0 0 0 408.1 31.9 304 12-335 3-306 (309) 24 TIGR01972 NDH_I_M proton-trans 93.4 0.54 1.4E-05 25.0 8.5 136 112-274 139-311 (532) 25 PRK08668 NADH dehydrogenase su 78.5 4.7 0.00012 19.4 13.4 65 118-186 128-192 (616) 26 pfam00361 Oxidored_q1 NADH-Ubi 76.5 5.3 0.00014 19.0 8.4 97 120-234 10-108 (270) 27 PRK12662 putative monovalent c 74.8 5.9 0.00015 18.8 14.8 102 117-234 135-238 (491) 28 PRK12648 putative monovalent c 64.5 9.8 0.00025 17.4 8.9 91 118-227 296-386 (950) 29 PRK12663 putative monovalent c 63.0 10 0.00027 17.3 13.7 94 118-227 133-226 (497) 30 PRK12644 putative monovalent c 62.1 11 0.00028 17.2 8.9 93 116-227 290-382 (968) 31 PRK02504 NAD(P)H-quinone oxido 60.9 11 0.00029 17.0 8.1 95 117-227 136-231 (514) 32 PRK08375 putative monovalent c 60.9 11 0.00029 17.0 15.0 102 118-234 132-235 (481) 33 PRK12668 putative monovalent c 57.1 13 0.00034 16.6 11.9 100 119-237 266-365 (569) 34 KOG1277 consensus 53.7 9.1 0.00023 17.6 2.0 88 132-229 341-431 (593) 35 PRK12650 putative monovalent c 51.6 16 0.00042 16.1 9.2 93 116-227 295-387 (969) 36 PRK07363 NAD(P)H-quinone oxido 51.5 16 0.00042 16.1 14.4 98 120-234 135-234 (499) 37 PRK12647 putative monovalent c 50.8 17 0.00043 16.0 12.1 93 116-227 282-374 (761) 38 PRK12665 putative monovalent c 50.5 17 0.00043 16.0 12.2 100 116-232 135-236 (524) 39 COG2966 Uncharacterized conser 49.4 18 0.00045 15.9 6.5 48 223-276 101-149 (250) 40 PRK06458 hydrogenase 4 subunit 45.7 20 0.00052 15.5 14.3 27 208-234 215-243 (491) 41 pfam10125 NADHdeh_related NADH 45.5 20 0.00052 15.5 5.2 132 84-250 68-199 (219) 42 PRK12664 putative monovalent c 44.9 21 0.00053 15.5 9.4 93 116-227 225-320 (530) 43 pfam11436 DUF3199 Protein of u 44.5 12 0.00031 16.9 1.5 37 224-260 25-70 (124) 44 PRK08667 hydrogenase membrane 44.2 21 0.00055 15.4 11.6 105 117-242 136-249 (644) 45 pfam01741 MscL Large-conductan 43.7 22 0.00056 15.3 8.5 21 207-227 82-102 (127) 46 PRK06591 putative monovalent c 42.8 23 0.00057 15.3 10.6 104 115-234 139-244 (433) 47 MTH00014 ND4 NADH dehydrogenas 40.9 24 0.00062 15.1 12.7 114 116-245 111-233 (451) 48 PRK07691 putative monovalent c 39.3 26 0.00065 14.9 16.5 104 117-234 134-239 (498) 49 PRK05846 NADH dehydrogenase su 37.6 27 0.00069 14.8 13.2 92 117-227 136-232 (495) 50 MTH00062 ND4 NADH dehydrogenas 37.2 28 0.0007 14.7 11.8 67 113-180 93-159 (419) 51 PRK12646 putative monovalent c 36.9 28 0.00071 14.7 9.6 94 115-227 296-403 (800) 52 KOG2232 consensus 35.8 17 0.00042 16.1 1.0 28 35-62 95-135 (734) 53 TIGR02019 BchJ bacteriochlorop 34.0 21 0.00054 15.4 1.3 13 47-64 1-13 (189) 54 PRK06473 NAD(P)H-quinone oxido 33.7 31 0.0008 14.4 13.8 109 117-242 132-249 (500) 55 MTH00110 ND4 NADH dehydrogenas 33.0 32 0.00082 14.3 14.5 125 113-253 113-246 (459) 56 KOG1275 consensus 31.8 20 0.0005 15.6 0.9 31 219-249 955-986 (1118) 57 KOG2228 consensus 27.1 41 0.001 13.7 2.7 46 31-81 182-227 (408) 58 PRK00989 truB tRNA pseudouridi 26.9 17 0.00042 16.1 -0.2 32 37-68 22-53 (235) 59 MTH00206 ND4 NADH dehydrogenas 25.6 43 0.0011 13.5 15.4 105 122-245 122-235 (452) 60 cd00506 PseudoU_synth_TruB_lik 25.5 17 0.00044 16.0 -0.3 30 37-66 13-42 (210) 61 KOG1047 consensus 25.5 32 0.00083 14.3 1.1 41 31-71 318-367 (613) 62 pfam08809 DUF1799 Phage relate 24.6 46 0.0012 13.4 1.8 26 42-69 32-58 (83) 63 pfam05348 UMP1 Proteasome matu 24.5 41 0.001 13.7 1.5 19 32-50 65-83 (130) 64 PRK04099 truB tRNA pseudouridi 24.1 20 0.00051 15.6 -0.2 30 37-66 15-44 (272) 65 PRK13954 mscL large-conductanc 23.1 49 0.0012 13.2 7.3 20 207-226 75-94 (120) 66 PRK09759 small toxic polypepti 22.7 49 0.0013 13.2 4.2 25 28-52 15-39 (50) 67 TIGR01770 NDH_I_N proton-trans 22.7 50 0.0013 13.2 9.1 115 117-236 130-249 (491) 68 PRK13419 F0F1 ATP synthase sub 22.7 50 0.0013 13.2 12.4 72 32-107 116-188 (335) 69 CHL00011 ndhD NADH dehydrogena 22.2 51 0.0013 13.1 13.3 35 208-242 212-255 (500) 70 PTZ00227 variable surface prot 22.2 47 0.0012 13.3 1.4 20 235-254 275-294 (418) 71 PRK12645 monovalent cation/H+ 21.9 51 0.0013 13.1 12.6 92 121-227 139-230 (800) 72 PRK08168 NADH dehydrogenase su 21.6 52 0.0013 13.1 9.8 90 132-234 137-231 (514) 73 PRK12667 putative monovalent c 21.5 52 0.0013 13.1 18.9 112 118-234 139-252 (517) 74 PRK02546 NAD(P)H-quinone oxido 21.3 53 0.0013 13.0 14.1 108 121-245 147-263 (531) 75 TIGR00109 hemH ferrochelatase; 20.8 30 0.00076 14.5 0.1 25 44-73 250-276 (339) 76 PRK08676 hydrogenase membrane 20.5 55 0.0014 12.9 14.4 85 120-226 299-386 (486) 77 PRK01528 truB tRNA pseudouridi 20.5 26 0.00065 14.9 -0.2 30 37-66 16-45 (293) 78 PRK06041 flagellar assembly pr 20.4 55 0.0014 12.9 9.9 113 221-337 157-282 (547) No 1 >CHL00032 ndhA NADH dehydrogenase subunit 1 Probab=100.00 E-value=0 Score=681.62 Aligned_cols=325 Identities=37% Similarity=0.650 Sum_probs=308.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH Q ss_conf 99999999999999999999999999999999999972789985744531888999999986305464535403898589 Q gi|254780860|r 9 FVPLFFMAIKSIVFLVGLLIFIAYVLLMDRKVWAAVQLRRGPNVVGPWGLLQSFADFLKFVFKEPIIPSKSNKILFLLAP 88 (348) Q Consensus 9 ~~~~~~~~i~~i~~~i~~l~~~~f~~~~eRKi~A~iQ~R~GP~~vg~~GilQp~~D~~KL~~Ke~i~p~~~~~~~f~~~P 88 (348) ...++.++++.+..+++++++++|+||.|||++||+|+|+||||||+.|++||++|++||+.||+++|+++|+..|.++| T Consensus 19 ~~~~~~~~i~i~~~~~~vll~Vaf~tl~ERKila~~Q~R~GPn~vg~~GllQpiaD~~KLl~KE~i~p~~a~~~~f~~aP 98 (359) T CHL00032 19 VYGLIWILVPILTLVLGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGTKLLFKEDLIPSRGDTRLFSIGP 98 (359) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH T ss_conf 99999999999999999999999999999999998654718082571255699999999998677861034799999999 Q ss_pred HHHHHHHHHHHHCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 89999998665318785523564050578999999999999999987512443210123344310136787668999999 Q gi|254780860|r 89 LVSVILSLSAWAVVPVADGWIIADINVGILYILAISSLEIYGIIIGGWASNSKYAFLGALRSAAQMISYEVSIGLVIVTV 168 (348) Q Consensus 89 ~i~~~~~~~~~~~iP~~~~~~~~~~~~~ll~~~~l~sl~~~~i~l~G~~S~s~ys~iG~~R~~~q~isyE~~l~l~i~~~ 168 (348) .+.++++++.|.++|++++....|.+.++++.++++++.+++++++||+||||||.+|+.|+++|++|||+|+.++++++ T Consensus 99 ~l~~~~~~l~~~~iP~~~~~~~~~~~~~ll~~l~~~sl~~~~ill~GWaSnskYs~lG~~R~~aq~ISYEi~l~l~~~~~ 178 (359) T CHL00032 99 SIAVISILLSYLVIPFGYHLVLADLSIGVFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 178 (359) T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999996146653210544999999999988999888101112768889999999999999889999999999 Q ss_pred HHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCH Q ss_conf 99823789899999851000022111124466699999989999999976875430100357608888987543023201 Q gi|254780860|r 169 VLCAGSLNLTDIVYSQKSGLGTFLGFPPSMLDWYWLALFPMFVVFFISLLAETNRPPFDLSEAESELVAGYMVEYSSTPY 248 (348) Q Consensus 169 ~l~~gs~~~~~iv~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~lae~~R~PFD~~EaEsELv~G~~tEYsG~~~ 248 (348) ++.+||+|+.+++++|+.++ ...|+.+.+|+++++|+++++||+||+|||+||||||||+|++|||||.+| T Consensus 179 ~l~~gs~sl~~iv~~Q~~~~---------~~~w~~~~~P~~fiiflI~~lAE~nR~PFDl~EaESELVsG~~tEYsG~~f 249 (359) T CHL00032 179 SLLSNSLSTVDIVEAQSKYG---------FWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKF 249 (359) T ss_pred HHHHCCCCHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCCCCCHHH T ss_conf 99947886899999988789---------999999998999999999999984899999886409885141320164979 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 1588999999999999999732365543122-------------366665689999999999999999999741012549 Q gi|254780860|r 249 LLFMLAEYSTIVLMCTLASILFLGGWLPPFD-------------ISLFKSIPGFFWLVFKTLGLFFMVAMVKAFVPRYRY 315 (348) Q Consensus 249 ~l~~l~ey~~~~~~s~l~~~lFlGg~~~p~~-------------~~~~~~l~~~~~~~~k~~~~~~~~i~ir~~~pR~R~ 315 (348) ++++++||.+++++|.+.+++|+|||++|.. .+..+.+.|..|+++|+.++.++++|+|+++||+|+ T Consensus 250 ~lffl~EY~~i~~~s~l~svLFlGGw~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~K~~~~~f~~iwiR~t~PR~Ry 329 (359) T CHL00032 250 GLFYVASYLNLLVSSLFVTVLYLGGWNLSIPYIFIPELFEINKTGGVFGTTIGIFITLAKTYLFLFISITTRWTLPRLRM 329 (359) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH T ss_conf 99999999999999999999970677665421111023100001236777789999999999999999999981701539 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999885427899999999999999999 Q gi|254780860|r 316 DQLMRLGWKVFLPLSFAMVLIVSFFLK 342 (348) Q Consensus 316 Dq~~~~~Wk~llpl~l~~~~~~~~~~~ 342 (348) ||+|+++||+++|++++|+++++.++. T Consensus 330 Dqlm~l~WK~lLPlal~~l~l~~~~~~ 356 (359) T CHL00032 330 DQLLNLGWKFLLPISLGNLLLTTSSQL 356 (359) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 999998999999999999999999999 No 2 >COG1005 NuoH NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion] Probab=100.00 E-value=0 Score=677.28 Aligned_cols=327 Identities=54% Similarity=0.930 Sum_probs=311.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHH Q ss_conf 68789999999999999999999999999999999999999727899857445318889999999863054645354038 Q gi|254780860|r 4 FIEDFFVPLFFMAIKSIVFLVGLLIFIAYVLLMDRKVWAAVQLRRGPNVVGPWGLLQSFADFLKFVFKEPIIPSKSNKIL 83 (348) Q Consensus 4 ~~~~~~~~~~~~~i~~i~~~i~~l~~~~f~~~~eRKi~A~iQ~R~GP~~vg~~GilQp~~D~~KL~~Ke~i~p~~~~~~~ 83 (348) ...++..+.+....+.+..++.+...+++.+|.|||+.||+|+|+|||+|||+|++|+++|.+|+++||+++|+++|+.+ T Consensus 3 ~~~~~~~~l~~~~~k~i~ili~~~~~~~~~~w~ERK~~a~~Q~R~GP~~VGp~GllQ~~AD~iKl~fKE~iiP~~adk~~ 82 (332) T COG1005 3 LFSDMDIPLLFTILKIVVILIGLLVAGAFLVWFERKLAARVQLRYGPNRVGPFGLLQLLADAIKLFFKEDIIPRGADKFL 82 (332) T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHH T ss_conf 14777999999999999999999999999999999999998835487600873288999999999850644578775037 Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 98589899999986653187855235640505789999999999999999875124432101233443101367876689 Q gi|254780860|r 84 FLLAPLVSVILSLSAWAVVPVADGWIIADINVGILYILAISSLEIYGIIIGGWASNSKYAFLGALRSAAQMISYEVSIGL 163 (348) Q Consensus 84 f~~~P~i~~~~~~~~~~~iP~~~~~~~~~~~~~ll~~~~l~sl~~~~i~l~G~~S~s~ys~iG~~R~~~q~isyE~~l~l 163 (348) |.++|+++++.++..++++|+++++...|.|.++++.++++|+.+|+++++||+|||||+.+|+.|+++|++|||+++.+ T Consensus 83 f~laPii~~~~a~~~~avIP~~~~~~v~~invgll~~~a~ssl~vygii~~GwASNnKya~lGa~R~aaq~iSYEV~~~l 162 (332) T COG1005 83 FTLAPIIALIPAFLAFAVIPFGPEWVVANLNVGLLFILAISSLGVYGIILAGWASNNKYALLGALRAAAQMISYEVPLGL 162 (332) T ss_pred HHHHHHHHHHHHHHHHEEECCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH T ss_conf 88847999999999870205799514418863999999999889999885445417803678999999899787899999 Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH Q ss_conf 99999998237898999998510000221111244666999999899999999768754301003576088889875430 Q gi|254780860|r 164 VIVTVVLCAGSLNLTDIVYSQKSGLGTFLGFPPSMLDWYWLALFPMFVVFFISLLAETNRPPFDLSEAESELVAGYMVEY 243 (348) Q Consensus 164 ~i~~~~l~~gs~~~~~iv~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~lae~~R~PFD~~EaEsELv~G~~tEY 243 (348) +++++.+.+||+|+.||+++|... .|+++.+|++|++|+++++|||||.|||+||||||+|+||+||| T Consensus 163 sv~~vv~~~GSln~~~IV~~Q~~~------------~W~~~~~p~~Fivf~Ia~laet~R~PFDl~EaE~ElVaG~~tEY 230 (332) T COG1005 163 SVLAVVMLAGSLNLVDIVNAQSGL------------LWNILLQPIAFIVFLIAMLAETNRFPFDLPEAESELVAGYSTEY 230 (332) T ss_pred HHHHHHHHHCCCCHHHHHHHCCCC------------CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCCH T ss_conf 999999994788799999863567------------64588718999999999999848999888754476641564011 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 23201158899999999999999973236554312236666568-99999999999999999997410125499998854 Q gi|254780860|r 244 SSTPYLLFMLAEYSTIVLMCTLASILFLGGWLPPFDISLFKSIP-GFFWLVFKTLGLFFMVAMVKAFVPRYRYDQLMRLG 322 (348) Q Consensus 244 sG~~~~l~~l~ey~~~~~~s~l~~~lFlGg~~~p~~~~~~~~l~-~~~~~~~k~~~~~~~~i~ir~~~pR~R~Dq~~~~~ 322 (348) ||.+|++++++||.+++..|.+.+++|||||++|+..+. ..+ +.+|+++|+..+.++++|+|+++||+|+||.|+++ T Consensus 231 Sg~~f~Lf~lgeY~~~~l~s~l~s~LFlGGw~~p~~~~~--~~p~~~iw~~~K~~~~~f~~~~~Ra~~PR~R~DQ~m~lg 308 (332) T COG1005 231 SGIKFGLFFLGEYINIILFSALVALLFLGGWLGPFPPPG--WVPGPFVWFVLKTAFLFFFFLWLRATLPRYRYDQLMRLG 308 (332) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC--CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH T ss_conf 118999999899999999999999998358788876543--578650246899999999999999857726699999724 Q ss_pred HHHHHHHHHHHHHHHHHHHHHH Q ss_conf 2789999999999999999999 Q gi|254780860|r 323 WKVFLPLSFAMVLIVSFFLKIY 344 (348) Q Consensus 323 Wk~llpl~l~~~~~~~~~~~~~ 344 (348) ||.++|++++|+++++.+.... T Consensus 309 WK~lLPlsl~nlv~ta~~~~~~ 330 (332) T COG1005 309 WKILLPLTLVNLVLTAALLLLV 330 (332) T ss_pred HHHHHHHHHHHHHHHHHHHHHC T ss_conf 7999999999999999999623 No 3 >MTH00029 ND1 NADH dehydrogenase subunit 1; Provisional Probab=100.00 E-value=0 Score=672.20 Aligned_cols=323 Identities=50% Similarity=0.905 Sum_probs=305.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH Q ss_conf 99999999999999999999999999999999999727899857445318889999999863054645354038985898 Q gi|254780860|r 10 VPLFFMAIKSIVFLVGLLIFIAYVLLMDRKVWAAVQLRRGPNVVGPWGLLQSFADFLKFVFKEPIIPSKSNKILFLLAPL 89 (348) Q Consensus 10 ~~~~~~~i~~i~~~i~~l~~~~f~~~~eRKi~A~iQ~R~GP~~vg~~GilQp~~D~~KL~~Ke~i~p~~~~~~~f~~~P~ 89 (348) ...+...++.+...++++++++|+||.|||++||+|+|+||||||+.|++||++|++||++||+++|+++|++.|..+|. T Consensus 4 ~~~i~~~i~~l~~~~~vl~~vaf~tl~ERKila~~Q~R~GPn~vg~~GllQp~aD~lKLl~KE~i~p~~a~~~~f~~~P~ 83 (343) T MTH00029 4 YSYITVTIKLLIIFVPLLLSVAYLTLAERKVLGLMQNRKGPAIVGPWGLVQPIADGVKLLTKELIIPSQANKFLYYIAPI 83 (343) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH T ss_conf 99999999999999999999999999999999998758080626824756999999999986567654015999999999 Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999986653187855235640505789999999999999999875124432101233443101367876689999999 Q gi|254780860|r 90 VSVILSLSAWAVVPVADGWIIADINVGILYILAISSLEIYGIIIGGWASNSKYAFLGALRSAAQMISYEVSIGLVIVTVV 169 (348) Q Consensus 90 i~~~~~~~~~~~iP~~~~~~~~~~~~~ll~~~~l~sl~~~~i~l~G~~S~s~ys~iG~~R~~~q~isyE~~l~l~i~~~~ 169 (348) ++++.+.+.|.++|++++....|.+.+++++++++|+++++++++||+||||||.+|+.|+++|++|||+|+.+++++++ T Consensus 84 i~~~~s~~~~~~iP~~~~~~~~~~~~~il~~l~l~sl~~~~~llaGWsSnskYsllG~~R~~aq~iSYEv~l~l~~l~~~ 163 (343) T MTH00029 84 ISFTLAILAWAIVTMDQGVFLSDLDVGVLYFLAISSLSVYAILLSGWASNSRYPFLGAIRCAAQMISYEVAIGLIIISVI 163 (343) T ss_pred HHHHHHHHHHEEECCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHH T ss_conf 99999988770311587500315748999999999889999886220037864335899999997163274999999999 Q ss_pred HHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCHH Q ss_conf 98237898999998510000221111244666999999899999999768754301003576088889875430232011 Q gi|254780860|r 170 LCAGSLNLTDIVYSQKSGLGTFLGFPPSMLDWYWLALFPMFVVFFISLLAETNRPPFDLSEAESELVAGYMVEYSSTPYL 249 (348) Q Consensus 170 l~~gs~~~~~iv~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~lae~~R~PFD~~EaEsELv~G~~tEYsG~~~~ 249 (348) +.+||+|+.+++++|++ .|+...+++++++|+++++||+||+|||+||||||||+|+||||||.+|+ T Consensus 164 l~~gs~~l~~i~~~q~~-------------~~~~~~~~~~~i~~li~~laE~nR~PFDl~EaESELVsG~~tEYsg~~f~ 230 (343) T MTH00029 164 LCVGSLNISEIVISQRS-------------VWLIIPLFPAAIMFMVASLAETARAPFDLTEGESELVSGFNVEYSSLSFA 230 (343) T ss_pred HHHCCCCHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCHHHH T ss_conf 99448868999999876-------------88876558899999999999858899987764255620226662670579 Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 5889999999999999997323655431223-----------66665689999999999999999999741012549999 Q gi|254780860|r 250 LFMLAEYSTIVLMCTLASILFLGGWLPPFDI-----------SLFKSIPGFFWLVFKTLGLFFMVAMVKAFVPRYRYDQL 318 (348) Q Consensus 250 l~~l~ey~~~~~~s~l~~~lFlGg~~~p~~~-----------~~~~~l~~~~~~~~k~~~~~~~~i~ir~~~pR~R~Dq~ 318 (348) +++++||.+++++|++.+++|+|||++|... ......++..|+.+|+.++.++++|+|+++||+|+||+ T Consensus 231 lffl~EY~~~~~~s~l~~~lFlGGw~~p~~~~~~~~~~~~~~~~~~~~~~~~~f~~K~~~~~~~~i~vR~t~PR~R~Dql 310 (343) T MTH00029 231 LFFLAEYSNIILMSCMMTIFFLGGWLSPLDGIPTPPEAFSIFEQIASSKSSFWFFTKSSIFILFFIWSRASFPRIRYDQL 310 (343) T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH T ss_conf 99999999999999999999817665533344431012012110012258999999999999999999971722769985 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 885427899999999999999999997 Q gi|254780860|r 319 MRLGWKVFLPLSFAMVLIVSFFLKIYT 345 (348) Q Consensus 319 ~~~~Wk~llpl~l~~~~~~~~~~~~~~ 345 (348) |++|||+++|++++|+++++.++..+. T Consensus 311 m~l~Wk~lLPlsl~~li~ta~i~~~~~ 337 (343) T MTH00029 311 MKLLWKTYLPLSLGLVILTAGILIGFN 337 (343) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 997899999999999999999999976 No 4 >MTH00216 ND1 NADH dehydrogenase subunit 1; Provisional Probab=100.00 E-value=0 Score=664.05 Aligned_cols=319 Identities=51% Similarity=0.916 Sum_probs=304.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH Q ss_conf 99999999999999999999999999999999999727899857445318889999999863054645354038985898 Q gi|254780860|r 10 VPLFFMAIKSIVFLVGLLIFIAYVLLMDRKVWAAVQLRRGPNVVGPWGLLQSFADFLKFVFKEPIIPSKSNKILFLLAPL 89 (348) Q Consensus 10 ~~~~~~~i~~i~~~i~~l~~~~f~~~~eRKi~A~iQ~R~GP~~vg~~GilQp~~D~~KL~~Ke~i~p~~~~~~~f~~~P~ 89 (348) ++++.++++.+..++.++++++|+||.|||++||+|+|+||||||+.|++||++|++||++||+++|+++|+..|..+|. T Consensus 3 ~~~~~~~~~~l~~~~~vll~vaf~tl~ERKila~~Q~R~GPn~vg~~GllQp~aD~~KL~~Ke~i~p~~~~~~~f~~aP~ 82 (327) T MTH00216 3 VTIIYLIFKILIIIVPLLIAVAYLTLAERKVLGYMQARKGPNVVGVGGLLQPFADGVKLFTKEMVIPHQANLFVYIVAPV 82 (327) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH T ss_conf 99999999999999999999999999999999997637180857835866999999999984887765235999999999 Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999986653187855235640505789999999999999999875124432101233443101367876689999999 Q gi|254780860|r 90 VSVILSLSAWAVVPVADGWIIADINVGILYILAISSLEIYGIIIGGWASNSKYAFLGALRSAAQMISYEVSIGLVIVTVV 169 (348) Q Consensus 90 i~~~~~~~~~~~iP~~~~~~~~~~~~~ll~~~~l~sl~~~~i~l~G~~S~s~ys~iG~~R~~~q~isyE~~l~l~i~~~~ 169 (348) ++++++++.|.++|++++....|.+.+++++++++++++++++++||+||||||.+|+.|+++|++|||+|+++++++++ T Consensus 83 i~~~~~l~~~~~iP~~~~~~~~~~~~~ll~~l~l~sl~~~~~~l~GwsSnskYs~lG~~R~~aq~iSYEi~l~l~~~~v~ 162 (327) T MTH00216 83 LSFTLAFIVWGVIPYERGVLISDLKIGILYILAISSISVYAILMSGWGSNSKYAFLGAIRAAAQMISYEVSIGLILISVL 162 (327) T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999888411688630107658899999999988888787321568860775188999999873274999999999 Q ss_pred HHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCHH Q ss_conf 98237898999998510000221111244666999999899999999768754301003576088889875430232011 Q gi|254780860|r 170 LCAGSLNLTDIVYSQKSGLGTFLGFPPSMLDWYWLALFPMFVVFFISLLAETNRPPFDLSEAESELVAGYMVEYSSTPYL 249 (348) Q Consensus 170 l~~gs~~~~~iv~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~lae~~R~PFD~~EaEsELv~G~~tEYsG~~~~ 249 (348) +.+||+|+.+++++|+++ .|+...+++++++|+++++||+||+|||++|||||||+|+||||||.+|+ T Consensus 163 l~~~s~~l~~i~~~q~~~------------~~~~~~~~~~~~i~li~~laE~nR~PFD~~EaESELVsG~~tEYsg~~f~ 230 (327) T MTH00216 163 LCVGSLSITEIVLAQNNG------------IWFFFPLFPVTIMFFASALAETNRAPFDLTEGESELVSGYNVEYASMSFA 230 (327) T ss_pred HHHCCCCHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHEEHHHHHCCHHHH T ss_conf 981688489999999714------------89885146557899999999968899998865454510028886268789 Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 58899999999999999973236554312236666568999999999999999999974101254999988542789999 Q gi|254780860|r 250 LFMLAEYSTIVLMCTLASILFLGGWLPPFDISLFKSIPGFFWLVFKTLGLFFMVAMVKAFVPRYRYDQLMRLGWKVFLPL 329 (348) Q Consensus 250 l~~l~ey~~~~~~s~l~~~lFlGg~~~p~~~~~~~~l~~~~~~~~k~~~~~~~~i~ir~~~pR~R~Dq~~~~~Wk~llpl 329 (348) +++++||.+++++|.+.+++|+|||.+|.. ....|..|+.+|+.++.++++|+|+++||+|+||+|+++||+++|+ T Consensus 231 l~fl~EY~~i~~~s~l~~~lFlgg~~~~~~----~~~~~~~~~~~k~~~~~~~~i~vR~~~PR~R~Dqlm~l~Wk~lLPl 306 (327) T MTH00216 231 LFFLAEYAHIILMSCLTTILFLGGWLSPIK----YLKGGAGWFGLKVVFIIFLFIWVRASFPRIRYDQLMALLWKGYLPL 306 (327) T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHCHHCCHHHHHHHHHHHHHHH T ss_conf 999999999999999999998652412003----3435799999999999999999997352152999699999999999 Q ss_pred HHHHHHHHHHHHHHH Q ss_conf 999999999999999 Q gi|254780860|r 330 SFAMVLIVSFFLKIY 344 (348) Q Consensus 330 ~l~~~~~~~~~~~~~ 344 (348) +++|+++++.++.-+ T Consensus 307 ~l~~l~~~~~~~~~~ 321 (327) T MTH00216 307 SLGVVTFVASVLFGL 321 (327) T ss_pred HHHHHHHHHHHHHHH T ss_conf 999999999999997 No 5 >PRK06076 NADH dehydrogenase subunit H; Provisional Probab=100.00 E-value=0 Score=663.38 Aligned_cols=328 Identities=56% Similarity=0.969 Sum_probs=312.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHH Q ss_conf 89999999999999999999999999999999999999727899857445318889999999863054645354038985 Q gi|254780860|r 7 DFFVPLFFMAIKSIVFLVGLLIFIAYVLLMDRKVWAAVQLRRGPNVVGPWGLLQSFADFLKFVFKEPIIPSKSNKILFLL 86 (348) Q Consensus 7 ~~~~~~~~~~i~~i~~~i~~l~~~~f~~~~eRKi~A~iQ~R~GP~~vg~~GilQp~~D~~KL~~Ke~i~p~~~~~~~f~~ 86 (348) ...-|++..+++.+..++.++++++|+||+|||++||+|+|+||||||+.|++||++|+.||++||+++|+++|++.|.. T Consensus 7 ~~~~~~~~~~i~~~~~~l~~ll~vaf~tl~ERKi~a~~Q~R~GP~~vg~~GllQp~~D~~KLl~Ke~~~p~~~~~~~f~~ 86 (335) T PRK06076 7 PGLAPILLTLLKAVVILVVVLLCVAFLIWAERKVLARMQLRIGPNRVGPFGLLQLVADGIKLFFKEDIIPKGADKFLFLL 86 (335) T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH T ss_conf 86329999999999999999999999999999999971368080926755021899999999885777620248999999 Q ss_pred HHHHHHHHHHHHHHCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 89899999986653187855235640505789999999999999999875124432101233443101367876689999 Q gi|254780860|r 87 APLVSVILSLSAWAVVPVADGWIIADINVGILYILAISSLEIYGIIIGGWASNSKYAFLGALRSAAQMISYEVSIGLVIV 166 (348) Q Consensus 87 ~P~i~~~~~~~~~~~iP~~~~~~~~~~~~~ll~~~~l~sl~~~~i~l~G~~S~s~ys~iG~~R~~~q~isyE~~l~l~i~ 166 (348) +|+++++.+.+.|.++|++++....|.++++++.++++++++++++++||+||||||.+|+.||++|++|||+|+.++++ T Consensus 87 ~P~l~~~~~~~~~~~iP~~~~~~~~~~~~~ll~~l~l~sl~~~~~~l~GwsS~s~Ys~iG~~R~~~q~isyEv~l~l~~~ 166 (335) T PRK06076 87 APVIAFIPAFLAWAVIPFGPGLVIADINVGILFILAISSLGVYGVILAGWASNNKYALLGALRAAAQMISYEVPLGLSLL 166 (335) T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999999986256651136557899999999989998887132069963235999999997878899999999 Q ss_pred HHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCC Q ss_conf 99998237898999998510000221111244666999999899999999768754301003576088889875430232 Q gi|254780860|r 167 TVVLCAGSLNLTDIVYSQKSGLGTFLGFPPSMLDWYWLALFPMFVVFFISLLAETNRPPFDLSEAESELVAGYMVEYSST 246 (348) Q Consensus 167 ~~~l~~gs~~~~~iv~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~lae~~R~PFD~~EaEsELv~G~~tEYsG~ 246 (348) ++++.+||+|+.+++++|..+. ..|+.+.+++++++|+++++||+||.|||++|||||+|+|++|||||. T Consensus 167 ~~~l~~gs~~~~~i~~~q~~~~----------~~~~~~~~~~~~i~~~i~~lae~~R~PFD~~EaEsELVsG~~tEYsG~ 236 (335) T PRK06076 167 AVVMLAGSLNLSDIVNAQSGGL----------LSWNILPQPPGFVVFFIAAVAETNRHPFDLPEAESELVAGYHTEYSGM 236 (335) T ss_pred HHHHHHCCCCHHHHHHHHHCCC----------CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCH T ss_conf 9999964887999999885220----------189999999999999999999838999987756478876597786438 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 01158899999999999999973236554312236666568999999999999999999974101254999988542789 Q gi|254780860|r 247 PYLLFMLAEYSTIVLMCTLASILFLGGWLPPFDISLFKSIPGFFWLVFKTLGLFFMVAMVKAFVPRYRYDQLMRLGWKVF 326 (348) Q Consensus 247 ~~~l~~l~ey~~~~~~s~l~~~lFlGg~~~p~~~~~~~~l~~~~~~~~k~~~~~~~~i~ir~~~pR~R~Dq~~~~~Wk~l 326 (348) +|++++++||.+++++|++.+.+|+|||++|.. ..+..++..|+++|+.++.++++|+|+++||+|+||+++++||++ T Consensus 237 ~fal~flaey~~~~~~s~l~~~lFlGG~~~~~~--~~~~~~~~~~~~~k~~~v~~~~i~iR~~~pR~R~Dqlm~~~Wk~~ 314 (335) T PRK06076 237 KFGLFFLGEYINMILMSALASTLFLGGWLPPWP--FLGWIPGAIWFVLKVFFFVFLFIWLRATLPRYRYDQLMRLGWKVL 314 (335) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH T ss_conf 899999999999999999999998477755421--111208999999999999999999997362041999999988999 Q ss_pred HHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999999976 Q gi|254780860|r 327 LPLSFAMVLIVSFFLKIYTL 346 (348) Q Consensus 327 lpl~l~~~~~~~~~~~~~~~ 346 (348) +|+++++++++.+++.++.. T Consensus 315 Lpl~l~~lil~~~~~l~~~~ 334 (335) T PRK06076 315 LPLSLVNLLVTAAVLLLFPQ 334 (335) T ss_pred HHHHHHHHHHHHHHHHEECC T ss_conf 99999999999999950078 No 6 >MTH00017 consensus Probab=100.00 E-value=0 Score=663.51 Aligned_cols=320 Identities=52% Similarity=0.923 Sum_probs=303.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH Q ss_conf 99999999999999999999999999999999999727899857445318889999999863054645354038985898 Q gi|254780860|r 10 VPLFFMAIKSIVFLVGLLIFIAYVLLMDRKVWAAVQLRRGPNVVGPWGLLQSFADFLKFVFKEPIIPSKSNKILFLLAPL 89 (348) Q Consensus 10 ~~~~~~~i~~i~~~i~~l~~~~f~~~~eRKi~A~iQ~R~GP~~vg~~GilQp~~D~~KL~~Ke~i~p~~~~~~~f~~~P~ 89 (348) ..++.++++.+..+++++++++|+||.|||++||+|+|+||||||+.|++||++|++||++||+++|+++|++.|..+|. T Consensus 3 ~~~~~~li~~l~~~~~~ll~vaf~tl~ERKila~iQ~R~GPn~vg~~GllQp~aD~~KL~~Ke~i~p~~~~~~~f~~~P~ 82 (327) T MTH00017 3 VSIIHLLLKILMVVVPLLIAVAYLTLAERKVLGYMQARKGPNVVGVYGLLQPFADGIKLFTKEMVIPHQANLFVYIVAPV 82 (327) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH T ss_conf 99999999999999999999999999999999995647080736834866999999999985777767440999999999 Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999986653187855235640505789999999999999999875124432101233443101367876689999999 Q gi|254780860|r 90 VSVILSLSAWAVVPVADGWIIADINVGILYILAISSLEIYGIIIGGWASNSKYAFLGALRSAAQMISYEVSIGLVIVTVV 169 (348) Q Consensus 90 i~~~~~~~~~~~iP~~~~~~~~~~~~~ll~~~~l~sl~~~~i~l~G~~S~s~ys~iG~~R~~~q~isyE~~l~l~i~~~~ 169 (348) ++++++.+.|.++|++++....|.+.++++++++.++++++++++||+||||||.+|+.|+++|++|||+|+++++++++ T Consensus 83 l~~~~~~~~~~~iP~~~~~~~~~~~~~ll~~l~l~sl~~~~i~l~GwsSnskYs~lG~~R~~aq~iSYEi~l~l~~l~~~ 162 (327) T MTH00017 83 LSFTLALIVWGVVPYERGVLISDLKIGILYVLAISSISVYAILMSGWASNSKYAFLGAIRAAAQMISYEVSIGLIIISVL 162 (327) T ss_pred HHHHHHHHHHHHCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999988634577623106638999999999848887674021258852475787999988510163899999999 Q ss_pred HHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCHH Q ss_conf 98237898999998510000221111244666999999899999999768754301003576088889875430232011 Q gi|254780860|r 170 LCAGSLNLTDIVYSQKSGLGTFLGFPPSMLDWYWLALFPMFVVFFISLLAETNRPPFDLSEAESELVAGYMVEYSSTPYL 249 (348) Q Consensus 170 l~~gs~~~~~iv~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~lae~~R~PFD~~EaEsELv~G~~tEYsG~~~~ 249 (348) +.+||+|+.+++++|+++ .|+...+++++++|+++++||+||+|||++|||||||+|+||||||.+|+ T Consensus 163 l~~~s~~l~~i~~~q~~~------------~~~~~~~~~~~ii~~i~~laE~nR~PFDl~EaEsELVsG~~tEYsg~~f~ 230 (327) T MTH00017 163 LCVGSLSITEIVLAQNSG------------VWFFFPLFPVAIMFFASALAETNRAPFDLTEGESELVSGYNVEYASMSFA 230 (327) T ss_pred HHHCCCCHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEHHHHCCHHHH T ss_conf 995588599999999805------------89999789999999999999978899998877622256534673478789 Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 58899999999999999973236554312236666568999999999999999999974101254999988542789999 Q gi|254780860|r 250 LFMLAEYSTIVLMCTLASILFLGGWLPPFDISLFKSIPGFFWLVFKTLGLFFMVAMVKAFVPRYRYDQLMRLGWKVFLPL 329 (348) Q Consensus 250 l~~l~ey~~~~~~s~l~~~lFlGg~~~p~~~~~~~~l~~~~~~~~k~~~~~~~~i~ir~~~pR~R~Dq~~~~~Wk~llpl 329 (348) +++++||.+++++|++.+++|+|||.+|... ...+..|+.+|+.++.++++|+|+++||+|+||+|+++||+++|+ T Consensus 231 l~flaEY~~~~~~s~l~~~lFlGg~~~p~~~----~~~~~~w~~~k~~~~~~~~i~vR~~~PR~R~Dqlm~l~Wk~llPl 306 (327) T MTH00017 231 LFFLAEYAHIILMSCLTTILFLGGWLSPIKY----LKGGAGWFGLKVVFIILLFIWVRASFPRIRYDQLMALLWKAYLPL 306 (327) T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHCHHCCHHHHHHHHHHHHHHH T ss_conf 9999999999999999999986401001444----525799999999999999999997252253999599899999999 Q ss_pred HHHHHHHHHHHHHHHH Q ss_conf 9999999999999997 Q gi|254780860|r 330 SFAMVLIVSFFLKIYT 345 (348) Q Consensus 330 ~l~~~~~~~~~~~~~~ 345 (348) +++|+++++.+..-+. T Consensus 307 ~l~~~~~~~~~~~~~~ 322 (327) T MTH00017 307 SLGVVTFVASVLFGLN 322 (327) T ss_pred HHHHHHHHHHHHHHHC T ss_conf 9999999999999976 No 7 >MTH00054 ND1 NADH dehydrogenase subunit 1; Provisional Probab=100.00 E-value=0 Score=657.53 Aligned_cols=313 Identities=53% Similarity=0.924 Sum_probs=299.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH Q ss_conf 99999999999999999999999999999972789985744531888999999986305464535403898589899999 Q gi|254780860|r 15 MAIKSIVFLVGLLIFIAYVLLMDRKVWAAVQLRRGPNVVGPWGLLQSFADFLKFVFKEPIIPSKSNKILFLLAPLVSVIL 94 (348) Q Consensus 15 ~~i~~i~~~i~~l~~~~f~~~~eRKi~A~iQ~R~GP~~vg~~GilQp~~D~~KL~~Ke~i~p~~~~~~~f~~~P~i~~~~ 94 (348) ++++.+..+++++++++|+|+.|||++||+|+|+||||||+.|++||++|++||+.||+++|+++|++.|..+|.+.+++ T Consensus 4 ~~l~~~~~~i~~ll~vaf~tl~ERKila~~Q~R~GPn~vg~~GllQp~aD~~KL~~Ke~i~p~~~~~~~f~~aP~~~~~~ 83 (321) T MTH00054 4 IIIKILAILVPLLISIAYLTLAERKVLGYIQCRKGPNVVGVYGLLQPIADGLKLFTKEIIIPNHANIFIYIMAPILSLTL 83 (321) T ss_pred EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH T ss_conf 09999999999999999999999999999865808085783365699999999998378685633289999999999999 Q ss_pred HHHHHHCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 98665318785523564050578999999999999999987512443210123344310136787668999999998237 Q gi|254780860|r 95 SLSAWAVVPVADGWIIADINVGILYILAISSLEIYGIIIGGWASNSKYAFLGALRSAAQMISYEVSIGLVIVTVVLCAGS 174 (348) Q Consensus 95 ~~~~~~~iP~~~~~~~~~~~~~ll~~~~l~sl~~~~i~l~G~~S~s~ys~iG~~R~~~q~isyE~~l~l~i~~~~l~~gs 174 (348) ++..|.++|++++....|.+.++++++++++++++++.++||+||||||.+|+.|+++|++|||+|+.++++++++.+|| T Consensus 84 ~~~~~~~iP~~~~~~~~~~~~~ll~~l~l~sl~~~~ill~GwsSnskYs~iG~~R~~aq~iSYEi~l~l~~~~~~l~~gs 163 (321) T MTH00054 84 AFIAWGVIPYGEGIVLSDLGIGILYLFAVSSISVYAVLMSGWSSNSKYAFLGAIRAAAQMISYEVSIGLIIISVVLCVGS 163 (321) T ss_pred HHHHHHHHHCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 99999872126773531446999999999987888877500135886545433589988765439999999999998235 Q ss_pred CCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHH Q ss_conf 89899999851000022111124466699999989999999976875430100357608888987543023201158899 Q gi|254780860|r 175 LNLTDIVYSQKSGLGTFLGFPPSMLDWYWLALFPMFVVFFISLLAETNRPPFDLSEAESELVAGYMVEYSSTPYLLFMLA 254 (348) Q Consensus 175 ~~~~~iv~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~lae~~R~PFD~~EaEsELv~G~~tEYsG~~~~l~~l~ 254 (348) +|+.+++++|++ .|+...+++++++|+++++||+||+|||++|||||||+|+||||||.+|++++++ T Consensus 164 ~~l~~i~~~q~~-------------~~~~~~~~~~~ii~~i~~laE~~R~PFDl~EaEsELVsG~~tEYsg~~f~l~fl~ 230 (321) T MTH00054 164 LNLTEIVLAQKN-------------IWFIFPLFPAAIMFFVSALAETNRVPFDLTEGESELVSGFNVEYSSMSFALFFLA 230 (321) T ss_pred CHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEHHHHCCCHHHHHHHH T ss_conf 404699998755-------------7887607889999999999984889999886662604555999746357999999 Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999997323655431223666656899999999999999999997410125499998854278999999999 Q gi|254780860|r 255 EYSTIVLMCTLASILFLGGWLPPFDISLFKSIPGFFWLVFKTLGLFFMVAMVKAFVPRYRYDQLMRLGWKVFLPLSFAMV 334 (348) Q Consensus 255 ey~~~~~~s~l~~~lFlGg~~~p~~~~~~~~l~~~~~~~~k~~~~~~~~i~ir~~~pR~R~Dq~~~~~Wk~llpl~l~~~ 334 (348) ||.+++++|++.+++|+|||++|. ....+..|+.+|+.++.++++|+|+++||+|+||+++++||+++|++++|+ T Consensus 231 ey~~~~~~s~l~~~lFlgg~~~p~-----~~~~~~~~~~~k~~~~~~~~i~vR~~~pR~R~Dqlm~l~Wk~llPl~l~~l 305 (321) T MTH00054 231 EYCHIILMSTFGVILFLGGWLGPL-----IFFSNSSFFGVKIALIIFLFIWIRASYPRIRYDQLMALLWKSYLPLSLAFV 305 (321) T ss_pred HHHHHHHHHHHHHHHHHCCCCCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH T ss_conf 999999999999998714233211-----456899999999999999999999606007099989999999999999999 Q ss_pred HHHHHHHHHHH Q ss_conf 99999999997 Q gi|254780860|r 335 LIVSFFLKIYT 345 (348) Q Consensus 335 ~~~~~~~~~~~ 345 (348) ++++.++..+. T Consensus 306 ~~~~~i~~~~~ 316 (321) T MTH00054 306 VLVSGILIGFN 316 (321) T ss_pred HHHHHHHHHHC T ss_conf 99999999976 No 8 >MTH00040 ND1 NADH dehydrogenase subunit 1; Validated Probab=100.00 E-value=0 Score=654.64 Aligned_cols=318 Identities=43% Similarity=0.804 Sum_probs=299.8 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH Q ss_conf 99999999999999999999999999999999999727899857445318889999999863054645354038985898 Q gi|254780860|r 10 VPLFFMAIKSIVFLVGLLIFIAYVLLMDRKVWAAVQLRRGPNVVGPWGLLQSFADFLKFVFKEPIIPSKSNKILFLLAPL 89 (348) Q Consensus 10 ~~~~~~~i~~i~~~i~~l~~~~f~~~~eRKi~A~iQ~R~GP~~vg~~GilQp~~D~~KL~~Ke~i~p~~~~~~~f~~~P~ 89 (348) |+.+.++++.+..++.++++++|+||+|||++||+|+|+||||||+.|++||++|++||++||++.|+++|++.|..+|. T Consensus 1 ~~~~~~~i~~~~~~~~vl~~vaf~tl~ERKila~~Q~R~GPn~vg~~GllQp~aD~iKLl~Ke~i~p~~~~~~~f~~aP~ 80 (323) T MTH00040 1 MTYILFLLNSINFIIPVLLAVAFLTLVERKVLGYMQLRKGPNIVGPYGLLQPIADGFKLFIKETLKPSNASPYLFFLSPA 80 (323) T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH T ss_conf 93799999999999999999999999999999998658080866754446999999999882787754120899999999 Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999986653187855235640505789999999999999999875124432101233443101367876689999999 Q gi|254780860|r 90 VSVILSLSAWAVVPVADGWIIADINVGILYILAISSLEIYGIIIGGWASNSKYAFLGALRSAAQMISYEVSIGLVIVTVV 169 (348) Q Consensus 90 i~~~~~~~~~~~iP~~~~~~~~~~~~~ll~~~~l~sl~~~~i~l~G~~S~s~ys~iG~~R~~~q~isyE~~l~l~i~~~~ 169 (348) +.+++++..|.++|.+.+ ..|.+.+++++++++++++++++++||+||||||.+|+.|+++|++|||+|+.+++++++ T Consensus 81 i~~~~~~~~~~~iP~~~~--~~~~~~~ll~~l~i~sl~~~~~ll~GwsSnskYs~iGa~R~~aq~iSYEv~l~l~~l~~~ 158 (323) T MTH00040 81 LFLFLALLLWSIIPVHNP--TLNINLSLLLVLGLSSLSVYSLLGSGWASNSKYSLLGAIRAVAQTISYEISLGLILLSLI 158 (323) T ss_pred HHHHHHHHHHHHHHCCCC--EEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 999999999999706885--033133699999998637888886313468854464161899987413387899999999 Q ss_pred HHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCHH Q ss_conf 98237898999998510000221111244666999999899999999768754301003576088889875430232011 Q gi|254780860|r 170 LCAGSLNLTDIVYSQKSGLGTFLGFPPSMLDWYWLALFPMFVVFFISLLAETNRPPFDLSEAESELVAGYMVEYSSTPYL 249 (348) Q Consensus 170 l~~gs~~~~~iv~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~lae~~R~PFD~~EaEsELv~G~~tEYsG~~~~ 249 (348) +.+||+|+.+++++|++ .|+....++++++|+++++||+||+|||+||||||||+|++|||||.+|+ T Consensus 159 ~~~gs~~l~~i~~~q~~-------------~~~~~~~~~~f~~~~i~~laE~nR~PFDl~EaEsELVsG~~tEYsg~~f~ 225 (323) T MTH00040 159 IFSGGFNLNYIENSQEG-------------SWLAFSCLPLFYIWFISTLAETNRAPFDLTEGESEIVSGYNVEYAGGPFA 225 (323) T ss_pred HHCCCCCHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCEEHHCCCCHHHH T ss_conf 96378869999999688-------------99999999999999999999968999988865321134110023667679 Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 58899999999999999973236554312236666568999999999999999999974101254999988542789999 Q gi|254780860|r 250 LFMLAEYSTIVLMCTLASILFLGGWLPPFDISLFKSIPGFFWLVFKTLGLFFMVAMVKAFVPRYRYDQLMRLGWKVFLPL 329 (348) Q Consensus 250 l~~l~ey~~~~~~s~l~~~lFlGg~~~p~~~~~~~~l~~~~~~~~k~~~~~~~~i~ir~~~pR~R~Dq~~~~~Wk~llpl 329 (348) +++++||.+++++|.+.+.+|+|||.+.... ...+..|+.+|+..+.++++|+|+++||+|+||+|+++||+++|+ T Consensus 226 l~flaEY~~i~~~s~l~~~lFlGg~~p~~~~----~~~~~~~~~lk~~~~~~~~i~vR~~~PR~R~Dqlm~~~Wk~lLPl 301 (323) T MTH00040 226 LFFIAEYANIIFMNLLSVVLFLGGSSPINEL----FPINIIIVGIKTTFLVFLFLWVRASYPRFRYDQLMFLTWKSYLPL 301 (323) T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH----HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH T ss_conf 9999999999999999999982888531014----478999999999999999999998173065999899888999999 Q ss_pred HHHHHHHHHHHHHHHHH Q ss_conf 99999999999999976 Q gi|254780860|r 330 SFAMVLIVSFFLKIYTL 346 (348) Q Consensus 330 ~l~~~~~~~~~~~~~~~ 346 (348) +++|++++.+.+..... T Consensus 302 ~l~~l~~~~~l~~~~~~ 318 (323) T MTH00040 302 SIGFLIFFIILLSSLNI 318 (323) T ss_pred HHHHHHHHHHHHHHHCC T ss_conf 99999999999999817 No 9 >MTH00111 ND1 NADH dehydrogenase subunit 1; Provisional Probab=100.00 E-value=0 Score=650.81 Aligned_cols=316 Identities=44% Similarity=0.776 Sum_probs=298.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH Q ss_conf 99999999999999999999999999999999999727899857445318889999999863054645354038985898 Q gi|254780860|r 10 VPLFFMAIKSIVFLVGLLIFIAYVLLMDRKVWAAVQLRRGPNVVGPWGLLQSFADFLKFVFKEPIIPSKSNKILFLLAPL 89 (348) Q Consensus 10 ~~~~~~~i~~i~~~i~~l~~~~f~~~~eRKi~A~iQ~R~GP~~vg~~GilQp~~D~~KL~~Ke~i~p~~~~~~~f~~~P~ 89 (348) ++++..+++.+..++.++++++|+|++|||++||+|+|+||||||++|++||++|++||+.||++.|+++|+..|..+|+ T Consensus 2 ~~~l~~li~~l~~~i~vl~~vaf~tl~ERKvla~~Q~R~GPn~vg~~GllQp~aD~lKLl~Ke~i~p~~~~~~~f~~aP~ 81 (323) T MTH00111 2 MTLLTNLINPLLYIIPILIAVAFLTLLERKILGYMQLRKGPNIVGPFGLLQPVADGVKLFIKEPIRPSTSSPTLFILSPI 81 (323) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH T ss_conf 89999999999999999999999999999999986548180955776334888999999995886620038999999999 Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999986653187855235640505789999999999999999875124432101233443101367876689999999 Q gi|254780860|r 90 VSVILSLSAWAVVPVADGWIIADINVGILYILAISSLEIYGIIIGGWASNSKYAFLGALRSAAQMISYEVSIGLVIVTVV 169 (348) Q Consensus 90 i~~~~~~~~~~~iP~~~~~~~~~~~~~ll~~~~l~sl~~~~i~l~G~~S~s~ys~iG~~R~~~q~isyE~~l~l~i~~~~ 169 (348) ++++++.+.|..+|.+. ...|.+.+++++++++++.+++++++||+||||||.+|+.|+++|++|||+|+.+++++++ T Consensus 82 i~~~~~~~~~~~iP~~~--~~~~~~~~ll~~l~i~sl~~~~ill~Gw~SnskYs~iG~~R~~aq~iSYEv~l~l~~l~i~ 159 (323) T MTH00111 82 LALLLALTIWTPLPMPF--PLADLNLGLLFLLAMSSLAVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGIILLSVI 159 (323) T ss_pred HHHHHHHHHHHHCCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999988771102443--1001179999999999999999998531358865501088998899888999999999999 Q ss_pred HHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCHH Q ss_conf 98237898999998510000221111244666999999899999999768754301003576088889875430232011 Q gi|254780860|r 170 LCAGSLNLTDIVYSQKSGLGTFLGFPPSMLDWYWLALFPMFVVFFISLLAETNRPPFDLSEAESELVAGYMVEYSSTPYL 249 (348) Q Consensus 170 l~~gs~~~~~iv~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~lae~~R~PFD~~EaEsELv~G~~tEYsG~~~~ 249 (348) +.+||+|+.+++++|++ .|+.+..+|++++|+++++||+||+|||+||||||||+|++|||||.+|+ T Consensus 160 ~~~gs~sl~~i~~~q~~-------------~~~~~~~~p~~ii~~i~~laE~nR~PFDl~EaEsELVsG~~tEYsg~~f~ 226 (323) T MTH00111 160 LLSGGYTLQTLATTQEP-------------LYLIFSSWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFA 226 (323) T ss_pred HHHCCCCHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCHHCCCCHHHH T ss_conf 99568868889999987-------------99999999999999999999818999997742088863300423756699 Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 58899999999999999973236554312236666568999999999999999999974101254999988542789999 Q gi|254780860|r 250 LFMLAEYSTIVLMCTLASILFLGGWLPPFDISLFKSIPGFFWLVFKTLGLFFMVAMVKAFVPRYRYDQLMRLGWKVFLPL 329 (348) Q Consensus 250 l~~l~ey~~~~~~s~l~~~lFlGg~~~p~~~~~~~~l~~~~~~~~k~~~~~~~~i~ir~~~pR~R~Dq~~~~~Wk~llpl 329 (348) +++++||.+++++|.+++++|+|||.++... ..+..|+..|+.++.++++|+|+++||+|+||+|+++||+++|+ T Consensus 227 l~fl~EY~~i~~~s~l~~~lFlg~~~~~~~~-----~~~~~~~~~k~~~~~~~~i~iR~~~PR~R~Dqlm~l~Wk~llPl 301 (323) T MTH00111 227 LFFLAEYANILLMNTLTTILFLNPSTLNLPP-----ELFTINLMTKTLLLSSGFLWIRASYPRFRYDQLMHLLWKNFLPL 301 (323) T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH-----HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH T ss_conf 9999999999999999999980887421005-----89999999999999999999998073064999999899999999 Q ss_pred HHHHHHHHHHHHHHHH Q ss_conf 9999999999999997 Q gi|254780860|r 330 SFAMVLIVSFFLKIYT 345 (348) Q Consensus 330 ~l~~~~~~~~~~~~~~ 345 (348) +++++++....+..|+ T Consensus 302 ~l~~~~~~~~~~~~~~ 317 (323) T MTH00111 302 TLALCLWHTSMPISYA 317 (323) T ss_pred HHHHHHHHHHHHHHHC T ss_conf 9999999999999976 No 10 >MTH00071 ND1 NADH dehydrogenase subunit 1; Provisional Probab=100.00 E-value=0 Score=646.71 Aligned_cols=315 Identities=45% Similarity=0.793 Sum_probs=296.3 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH Q ss_conf 99999999999999999999999999999999999727899857445318889999999863054645354038985898 Q gi|254780860|r 10 VPLFFMAIKSIVFLVGLLIFIAYVLLMDRKVWAAVQLRRGPNVVGPWGLLQSFADFLKFVFKEPIIPSKSNKILFLLAPL 89 (348) Q Consensus 10 ~~~~~~~i~~i~~~i~~l~~~~f~~~~eRKi~A~iQ~R~GP~~vg~~GilQp~~D~~KL~~Ke~i~p~~~~~~~f~~~P~ 89 (348) +.++.++++.+..+++++++++|+|+.|||++||+|+|+||||||+.|++||++|++||+.||++.|+++|++.|..+|. T Consensus 2 ~~~~~~~i~~~~~~i~vll~vaf~tl~ERKila~~Q~R~GPn~vg~~GllQp~aD~iKLl~Ke~i~p~~~~~~~f~~aP~ 81 (322) T MTH00071 2 MTLISLIINPLLYIIPVLLAVAFLTLVERKVLGYMQLRKGPNIVGPMGLLQPIADGLKLFIKEPIRPSTSSQTLFILMPT 81 (322) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH T ss_conf 78999999999999999999999999999999998658080926764114688999999873574610004999998189 Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999986653187855235640505789999999999999999875124432101233443101367876689999999 Q gi|254780860|r 90 VSVILSLSAWAVVPVADGWIIADINVGILYILAISSLEIYGIIIGGWASNSKYAFLGALRSAAQMISYEVSIGLVIVTVV 169 (348) Q Consensus 90 i~~~~~~~~~~~iP~~~~~~~~~~~~~ll~~~~l~sl~~~~i~l~G~~S~s~ys~iG~~R~~~q~isyE~~l~l~i~~~~ 169 (348) ++++++.+.|..+|.+... .|.+.+++++++++++.+++++++||+||||||.+|+.|+++|++|||+++.+++++++ T Consensus 82 i~~~~~~~~~~~~P~~~~~--~~~~~~il~~l~i~sl~~~~i~l~GwsSnskYs~lGa~R~~aq~iSYEv~l~l~~l~~~ 159 (322) T MTH00071 82 MALTLALIIWTPLPMPNTL--SNLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVTLGLILLCLI 159 (322) T ss_pred HHHHHHHHHHEECCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9999998843113565644--36319999999999889999999860459865501089998788775998999999999 Q ss_pred HHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCHH Q ss_conf 98237898999998510000221111244666999999899999999768754301003576088889875430232011 Q gi|254780860|r 170 LCAGSLNLTDIVYSQKSGLGTFLGFPPSMLDWYWLALFPMFVVFFISLLAETNRPPFDLSEAESELVAGYMVEYSSTPYL 249 (348) Q Consensus 170 l~~gs~~~~~iv~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~lae~~R~PFD~~EaEsELv~G~~tEYsG~~~~ 249 (348) +.+||+|+.+++.+|+. .|+.+..+|.+++++++++||+||+|||++|||||||+|+||||||.+|+ T Consensus 160 l~~gs~sl~~i~~~q~~-------------~~~~~~~~~~~~i~fi~~laE~nR~PFDl~EaEsELVsG~~tEYsg~~fa 226 (322) T MTH00071 160 LLTGSFTLMNFNTTQEF-------------MWLIIPAWPMAAMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFA 226 (322) T ss_pred HHHCCCCHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCHHHH T ss_conf 99458879999999999-------------99999999999999999999828999997753599977578876357789 Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 58899999999999999973236554312236666568999999999999999999974101254999988542789999 Q gi|254780860|r 250 LFMLAEYSTIVLMCTLASILFLGGWLPPFDISLFKSIPGFFWLVFKTLGLFFMVAMVKAFVPRYRYDQLMRLGWKVFLPL 329 (348) Q Consensus 250 l~~l~ey~~~~~~s~l~~~lFlGg~~~p~~~~~~~~l~~~~~~~~k~~~~~~~~i~ir~~~pR~R~Dq~~~~~Wk~llpl 329 (348) +++++||.+++++|++.+.+|+|||.+|.. ...+..|+.+|+.++.++++|+|+++||+|+||+|+++||+++|+ T Consensus 227 l~flaEY~~i~~~s~l~~~lFlGg~~~~~~-----~~~~~~~~~~k~~~~~~~~i~iR~~~pR~R~Dqlm~~~Wk~llPl 301 (322) T MTH00071 227 LFFLAEYANILMMNTLSTILFLGSTYNHLQ-----PELSTINLMIKASILSMLFLWVRASYPRFRYDQLMHLVWKNFLPI 301 (322) T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCHH-----HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH T ss_conf 999999999999999999999664533102-----688999999999999999999986274265999999899999999 Q ss_pred HHHHHHHHHHHHHHH Q ss_conf 999999999999999 Q gi|254780860|r 330 SFAMVLIVSFFLKIY 344 (348) Q Consensus 330 ~l~~~~~~~~~~~~~ 344 (348) ++++++........+ T Consensus 302 ~l~~li~~~~l~i~~ 316 (322) T MTH00071 302 TLAMTIFHISLPIST 316 (322) T ss_pred HHHHHHHHHHHHHHH T ss_conf 999999999999998 No 11 >MTH00104 ND1 NADH dehydrogenase subunit 1; Provisional Probab=100.00 E-value=0 Score=648.17 Aligned_cols=312 Identities=43% Similarity=0.796 Sum_probs=292.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH Q ss_conf 99999999999999999999999999999727899857445318889999999863054645354038985898999999 Q gi|254780860|r 16 AIKSIVFLVGLLIFIAYVLLMDRKVWAAVQLRRGPNVVGPWGLLQSFADFLKFVFKEPIIPSKSNKILFLLAPLVSVILS 95 (348) Q Consensus 16 ~i~~i~~~i~~l~~~~f~~~~eRKi~A~iQ~R~GP~~vg~~GilQp~~D~~KL~~Ke~i~p~~~~~~~f~~~P~i~~~~~ 95 (348) +++.+..++.++++++|+||.|||++||+|+|+||||||++|++||++|++||++||+++|+++|++.|..+|+++++++ T Consensus 3 ~i~~l~~~~~vll~vaf~tl~ERKvla~~Q~R~GPn~vg~~GllQp~aD~iKLl~Ke~i~p~~~~~~~f~~aP~l~~~~~ 82 (318) T MTH00104 3 MINILLLIIPILLAVAFLTLVERKVLGYMQLRKGPNIVGPYGLLQPIADAVKLFTKEPLRPLTSSISMFIIAPILALTLA 82 (318) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH T ss_conf 69999999999999999999999999997558180957864021788999999996787701126899999999999999 Q ss_pred HHHHHCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 86653187855235640505789999999999999999875124432101233443101367876689999999982378 Q gi|254780860|r 96 LSAWAVVPVADGWIIADINVGILYILAISSLEIYGIIIGGWASNSKYAFLGALRSAAQMISYEVSIGLVIVTVVLCAGSL 175 (348) Q Consensus 96 ~~~~~~iP~~~~~~~~~~~~~ll~~~~l~sl~~~~i~l~G~~S~s~ys~iG~~R~~~q~isyE~~l~l~i~~~~l~~gs~ 175 (348) ...|..+|.+.+ ..|.+.+++++++++++++++++++||+||||||.+|+.|+++|++|||+++.++++++++.+||+ T Consensus 83 ~~~~~~iP~~~~--~~~~~~~ll~~l~l~sl~~~~i~l~GwsS~skYs~iG~~R~~aq~iSYEv~l~l~~~~~~~~~gs~ 160 (318) T MTH00104 83 LTMWIPLPMPYP--LINMNLGLLFILAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMNGSF 160 (318) T ss_pred HHHHHHHHCCCC--CCCCHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 999999734443--103348799999999999999882355159975500598999899998899999999999983678 Q ss_pred CHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHH Q ss_conf 98999998510000221111244666999999899999999768754301003576088889875430232011588999 Q gi|254780860|r 176 NLTDIVYSQKSGLGTFLGFPPSMLDWYWLALFPMFVVFFISLLAETNRPPFDLSEAESELVAGYMVEYSSTPYLLFMLAE 255 (348) Q Consensus 176 ~~~~iv~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~lae~~R~PFD~~EaEsELv~G~~tEYsG~~~~l~~l~e 255 (348) |+.+++++|++ .|+.+..++++++|+++++||+||+|||++|||||||+|+||||||.+|++++++| T Consensus 161 sl~~i~~~q~~-------------~~~~~~~~~~~~i~~i~~laE~~R~PFDl~EaEsELVsG~~tEYsG~~f~l~fl~E 227 (318) T MTH00104 161 TLSTLITTQEH-------------LWLIFPSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAE 227 (318) T ss_pred CHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHH T ss_conf 69999998877-------------99999999999999999999808999997745398865588897038899999999 Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999973236554312236666568999999999999999999974101254999988542789999999999 Q gi|254780860|r 256 YSTIVLMCTLASILFLGGWLPPFDISLFKSIPGFFWLVFKTLGLFFMVAMVKAFVPRYRYDQLMRLGWKVFLPLSFAMVL 335 (348) Q Consensus 256 y~~~~~~s~l~~~lFlGg~~~p~~~~~~~~l~~~~~~~~k~~~~~~~~i~ir~~~pR~R~Dq~~~~~Wk~llpl~l~~~~ 335 (348) |.+++++|.+.+++|+|||++|+.. ..+..|+.+|+.++.++++|+|+++||+|+||+|+++||+++|+++++++ T Consensus 228 Y~~~~~~s~l~~~lFlGg~~~~~~~-----~~~~~~~~~k~~~~~~~~i~vR~~~PR~R~Dqlm~~~Wk~llPl~l~~l~ 302 (318) T MTH00104 228 YANIIMMNALTTILFLGAFHNPYMP-----ELYTTNFTIKTLLLTILFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCM 302 (318) T ss_pred HHHHHHHHHHHHHHHHCCCCCCCHH-----HHHHHHHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHHHHHHHHHH T ss_conf 9999999999999995655442026-----78999999999999999999887154331999999999999999999999 Q ss_pred HHHHHHHHHHHH Q ss_conf 999999999763 Q gi|254780860|r 336 IVSFFLKIYTLI 347 (348) Q Consensus 336 ~~~~~~~~~~~~ 347 (348) +...++..+..+ T Consensus 303 ~~~~~~i~~~~~ 314 (318) T MTH00104 303 WHISLPIMTASI 314 (318) T ss_pred HHHHHHHHHCCC T ss_conf 999999997669 No 12 >MTH00134 ND1 NADH dehydrogenase subunit 1; Provisional Probab=100.00 E-value=0 Score=642.90 Aligned_cols=318 Identities=46% Similarity=0.784 Sum_probs=297.8 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH Q ss_conf 99999999999999999999999999999999999727899857445318889999999863054645354038985898 Q gi|254780860|r 10 VPLFFMAIKSIVFLVGLLIFIAYVLLMDRKVWAAVQLRRGPNVVGPWGLLQSFADFLKFVFKEPIIPSKSNKILFLLAPL 89 (348) Q Consensus 10 ~~~~~~~i~~i~~~i~~l~~~~f~~~~eRKi~A~iQ~R~GP~~vg~~GilQp~~D~~KL~~Ke~i~p~~~~~~~f~~~P~ 89 (348) .+++..+++.+..++.++++++|+||.|||++||+|+|+||||||++|++||++|++||+.||++.|+++|++.|.++|. T Consensus 3 ~~~i~~~i~~l~~~i~vl~~vaf~tl~ERKila~~Q~R~GPn~vg~~GllQp~aD~iKLl~Ke~i~p~~~~~~~f~~~P~ 82 (324) T MTH00134 3 STLITHIINPLAYIVPVLLAVAFLTLIERKVLGYMQLRKGPNIVGPYGLLQPIADGVKLFIKEPVRPSTSSPFLFLATPM 82 (324) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH T ss_conf 99999999999999999999999999999999986557180945755113888999999881887600238999999999 Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999986653187855235640505789999999999999999875124432101233443101367876689999999 Q gi|254780860|r 90 VSVILSLSAWAVVPVADGWIIADINVGILYILAISSLEIYGIIIGGWASNSKYAFLGALRSAAQMISYEVSIGLVIVTVV 169 (348) Q Consensus 90 i~~~~~~~~~~~iP~~~~~~~~~~~~~ll~~~~l~sl~~~~i~l~G~~S~s~ys~iG~~R~~~q~isyE~~l~l~i~~~~ 169 (348) ++++++.+.|..+|.+. ...|.+.+++++++++++++++++++||+||||||.+|+.|+++|++|||+|+.+++++++ T Consensus 83 l~~~~~~~~~~~~p~~~--~~~~~~~~ll~~l~l~sl~~~~ill~GwsSnskys~lG~~R~~aq~ISYEv~l~l~~l~~~ 160 (324) T MTH00134 83 LALTLALTLWAPMPMPY--PVTDLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLSVI 160 (324) T ss_pred HHHHHHHHHHHHHCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999960444--2213119999999999889999898530469974411298999899876998999999999 Q ss_pred HHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCHH Q ss_conf 98237898999998510000221111244666999999899999999768754301003576088889875430232011 Q gi|254780860|r 170 LCAGSLNLTDIVYSQKSGLGTFLGFPPSMLDWYWLALFPMFVVFFISLLAETNRPPFDLSEAESELVAGYMVEYSSTPYL 249 (348) Q Consensus 170 l~~gs~~~~~iv~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~lae~~R~PFD~~EaEsELv~G~~tEYsG~~~~ 249 (348) +.+||+|+.+++.+|++ .|+.+..++.+.+++++++||+||+|||+||||||||+|++|||||.+|+ T Consensus 161 l~~gs~sl~~~~~~q~~-------------~~~~~~~~~l~~i~~i~~laE~~R~PFD~~EaEsELVsG~~tEYsG~~fa 227 (324) T MTH00134 161 IFTGGFTLQTFNTAQES-------------IWLLLPAWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFA 227 (324) T ss_pred HHHCCCCHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCHHHH T ss_conf 99648867899999988-------------99999999999999999999808999997632599975366766348789 Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 58899999999999999973236554312236666568999999999999999999974101254999988542789999 Q gi|254780860|r 250 LFMLAEYSTIVLMCTLASILFLGGWLPPFDISLFKSIPGFFWLVFKTLGLFFMVAMVKAFVPRYRYDQLMRLGWKVFLPL 329 (348) Q Consensus 250 l~~l~ey~~~~~~s~l~~~lFlGg~~~p~~~~~~~~l~~~~~~~~k~~~~~~~~i~ir~~~pR~R~Dq~~~~~Wk~llpl 329 (348) +++++||.++++++.+.+++|+|||++|... ..+..++.+|+.++.++++|+|+++||+|+||+|+++||+++|+ T Consensus 228 l~fl~EY~~i~~~s~l~~~lFlGg~~~p~~~-----~~~~~~~~~k~~~~~~~~i~vR~~~pR~R~Dqlm~~~Wk~llPl 302 (324) T MTH00134 228 LFFLAEYANILLMNTLSAILFLGASHIPTLP-----ELTTINLMTKAALLSVVFLWVRASYPRFRYDQLMHLVWKNFLPL 302 (324) T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH T ss_conf 9999999999999999999981633000105-----78999999999999999999998255402999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHH Q ss_conf 999999999999999763 Q gi|254780860|r 330 SFAMVLIVSFFLKIYTLI 347 (348) Q Consensus 330 ~l~~~~~~~~~~~~~~~~ 347 (348) +++++++.......|..+ T Consensus 303 ~l~~l~~~~~l~~~f~~~ 320 (324) T MTH00134 303 TLALVIWHLALPIAFAGL 320 (324) T ss_pred HHHHHHHHHHHHHHHCCC T ss_conf 999999999999997779 No 13 >pfam00146 NADHdh NADH dehydrogenase. Probab=100.00 E-value=0 Score=648.21 Aligned_cols=307 Identities=54% Similarity=0.989 Sum_probs=292.4 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH Q ss_conf 99999999999999999999999999999972789985744531888999999986305464535403898589899999 Q gi|254780860|r 15 MAIKSIVFLVGLLIFIAYVLLMDRKVWAAVQLRRGPNVVGPWGLLQSFADFLKFVFKEPIIPSKSNKILFLLAPLVSVIL 94 (348) Q Consensus 15 ~~i~~i~~~i~~l~~~~f~~~~eRKi~A~iQ~R~GP~~vg~~GilQp~~D~~KL~~Ke~i~p~~~~~~~f~~~P~i~~~~ 94 (348) ++++.+..++.++++++|+||+|||++||+|+|+||||||+.|++||++|+.||++||+++|+++|++.|..+|.+++++ T Consensus 2 ~~i~~~~~~i~vl~~vaf~tl~ERKi~a~~Q~R~GP~~vg~~GllQp~~D~~KLl~Ke~i~p~~~~~~~f~~~P~~~~~~ 81 (309) T pfam00146 2 ILLNILLLIIPVLLSVAFLTLLERKVLGYMQQRKGPNVVGPLGLLQPFADGLKLFIKEPVVPSTSSPFLFTLAPVLALTL 81 (309) T ss_pred EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH T ss_conf 80999999999999999999999999999755808097786501199999999987478675312599999999999999 Q ss_pred HHHHHHCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 98665318785523564050578999999999999999987512443210123344310136787668999999998237 Q gi|254780860|r 95 SLSAWAVVPVADGWIIADINVGILYILAISSLEIYGIIIGGWASNSKYAFLGALRSAAQMISYEVSIGLVIVTVVLCAGS 174 (348) Q Consensus 95 ~~~~~~~iP~~~~~~~~~~~~~ll~~~~l~sl~~~~i~l~G~~S~s~ys~iG~~R~~~q~isyE~~l~l~i~~~~l~~gs 174 (348) +.+.|..+|.+++. .|.+.+++++++++++++++++++||+||||||.+|+.|+++|++|||+|++++++++++.+|| T Consensus 82 ~~~~~~~iP~~~~~--~~~~~~ll~~l~l~sl~~~~~~l~GwsS~skys~iG~~R~~~q~iSYEi~l~l~~~~~~~~~~s 159 (309) T pfam00146 82 ALLAWVVLPFPYGL--VDFNLGVLFFLALSSLAVYGVLMSGWASNSKYALLGALRAVAQTISYEVSLGLILLSIIILSGS 159 (309) T ss_pred HHHHHHHCCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 98888621466654--3664359999999888999886100047853147504089884024636799999999998178 Q ss_pred CCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHH Q ss_conf 89899999851000022111124466699999989999999976875430100357608888987543023201158899 Q gi|254780860|r 175 LNLTDIVYSQKSGLGTFLGFPPSMLDWYWLALFPMFVVFFISLLAETNRPPFDLSEAESELVAGYMVEYSSTPYLLFMLA 254 (348) Q Consensus 175 ~~~~~iv~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~lae~~R~PFD~~EaEsELv~G~~tEYsG~~~~l~~l~ 254 (348) +|+.+++++|.. .|+.+.+++++++|+++++||+||+|||+||||||+|+|++|||||.+|++++++ T Consensus 160 ~~l~~i~~~q~~-------------~~~~~~~~~~~i~~~i~~lae~~R~PFD~~EaEsELVsG~~tEysG~~f~l~fla 226 (309) T pfam00146 160 FNLSDIVNAQEL-------------GWNILPQFPLFLMFFISTLAETNRAPFDLPEGESELVAGYNVEYSGGPFALFFLA 226 (309) T ss_pred CCHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEHHHHCCHHHHHHHHH T ss_conf 709999998545-------------8888756778999999999996899998886776714764566546889999999 Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999997323655431223666656899999999999999999997410125499998854278999999999 Q gi|254780860|r 255 EYSTIVLMCTLASILFLGGWLPPFDISLFKSIPGFFWLVFKTLGLFFMVAMVKAFVPRYRYDQLMRLGWKVFLPLSFAMV 334 (348) Q Consensus 255 ey~~~~~~s~l~~~lFlGg~~~p~~~~~~~~l~~~~~~~~k~~~~~~~~i~ir~~~pR~R~Dq~~~~~Wk~llpl~l~~~ 334 (348) ||.++++++++.+.+|+|||++|.. ...+..|+.+|+.++.++++|+|+++||+|+||+++++||+++|++++|+ T Consensus 227 ey~~~~~~s~l~~~lFlGg~~~~~~-----~~~~~~~~~~k~~~~~~~~i~vR~~~pR~R~Dqlm~l~Wk~llpl~l~~l 301 (309) T pfam00146 227 EYANIILMSLLTSVLFLGGWLPILP-----PELGIIWFVLKTYLLFFLFIWVRASYPRFRYDQLMYLGWKNFLPLSLANL 301 (309) T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCC-----HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH T ss_conf 9999999999999997075543210-----35899999999999999999998716035099999999899999999999 Q ss_pred HHHHHHH Q ss_conf 9999999 Q gi|254780860|r 335 LIVSFFL 341 (348) Q Consensus 335 ~~~~~~~ 341 (348) ++++..+ T Consensus 302 ~~~~~l~ 308 (309) T pfam00146 302 LFTASLL 308 (309) T ss_pred HHHHHHC T ss_conf 9999831 No 14 >MTH00218 ND1 NADH dehydrogenase subunit 1; Provisional Probab=100.00 E-value=0 Score=642.42 Aligned_cols=307 Identities=49% Similarity=0.864 Sum_probs=291.4 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH Q ss_conf 99999999999999999999999999999999972789985744531888999999986305464535403898589899 Q gi|254780860|r 12 LFFMAIKSIVFLVGLLIFIAYVLLMDRKVWAAVQLRRGPNVVGPWGLLQSFADFLKFVFKEPIIPSKSNKILFLLAPLVS 91 (348) Q Consensus 12 ~~~~~i~~i~~~i~~l~~~~f~~~~eRKi~A~iQ~R~GP~~vg~~GilQp~~D~~KL~~Ke~i~p~~~~~~~f~~~P~i~ 91 (348) ++..+++.+..++++++.++|+||+|||++||+|+|+||||||+.|++||++|+.||+.||++.|+++|++.|..+|.++ T Consensus 2 ~~~~~~~~l~~~i~vl~~vaf~tl~ERKila~~Q~R~GPn~vg~~GllQp~aD~~KLl~Ke~i~p~~~~~~~f~~aP~l~ 81 (314) T MTH00218 2 MMLSIINLLLYIIPVLLAVAFLTLLERKVLGYMQLRKGPNVVGPYGLLQPIADGVKLFIKEPVRPSGSSPFLFLLAPILA 81 (314) T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH T ss_conf 79999999999999999999999999999999865808086786433599999999988378775522599999999999 Q ss_pred HHHHHHHHHCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99998665318785523564050578999999999999999987512443210123344310136787668999999998 Q gi|254780860|r 92 VILSLSAWAVVPVADGWIIADINVGILYILAISSLEIYGIIIGGWASNSKYAFLGALRSAAQMISYEVSIGLVIVTVVLC 171 (348) Q Consensus 92 ~~~~~~~~~~iP~~~~~~~~~~~~~ll~~~~l~sl~~~~i~l~G~~S~s~ys~iG~~R~~~q~isyE~~l~l~i~~~~l~ 171 (348) ++.+...|.++|.+.+ ..+.+.+++++++++++++++++++||+||||||.+|+.|+++|++|||+++.++++++++. T Consensus 82 ~~~~~~~~~~iP~~~~--~~~~~~~ll~~l~l~sl~~~~~~l~GwsSnSkYs~iG~~R~~aq~iSYEv~l~l~~l~~~~~ 159 (314) T MTH00218 82 LTLALLLWMPLPLPHS--FINLNLGLLFILAISSLSVYSILGSGWASNSKYALMGALRAVAQTISYEVSLGLIILSLVIL 159 (314) T ss_pred HHHHHHHHHHCCCCCC--HHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9999999974256631--11134228899999757899999874256897656412089999956768999999999998 Q ss_pred HCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCHHHH Q ss_conf 23789899999851000022111124466699999989999999976875430100357608888987543023201158 Q gi|254780860|r 172 AGSLNLTDIVYSQKSGLGTFLGFPPSMLDWYWLALFPMFVVFFISLLAETNRPPFDLSEAESELVAGYMVEYSSTPYLLF 251 (348) Q Consensus 172 ~gs~~~~~iv~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~lae~~R~PFD~~EaEsELv~G~~tEYsG~~~~l~ 251 (348) +||+|+.+++++|++ .|.....++++++|+++++||+||+|||++|||||||+|+||||||.+|+++ T Consensus 160 ~gs~~l~~i~~~q~~-------------~~~~~~~~~~~i~~~i~~laE~nR~PFDl~EaEsELVsG~~tEYsG~~fal~ 226 (314) T MTH00218 160 AGGFTLSTFNYYQET-------------IWLLGPFWPLAVMWFISTLAETNRAPFDLTEGESELVSGFNVEYSGGPFALF 226 (314) T ss_pred CCCCCHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEHHHHCCHHHHHH T ss_conf 079867999998635-------------9999878899999999999997889999887672312123999645377999 Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 89999999999999997323655431223666656899999999999999999997410125499998854278999999 Q gi|254780860|r 252 MLAEYSTIVLMCTLASILFLGGWLPPFDISLFKSIPGFFWLVFKTLGLFFMVAMVKAFVPRYRYDQLMRLGWKVFLPLSF 331 (348) Q Consensus 252 ~l~ey~~~~~~s~l~~~lFlGg~~~p~~~~~~~~l~~~~~~~~k~~~~~~~~i~ir~~~pR~R~Dq~~~~~Wk~llpl~l 331 (348) +++||.+++++|++.+.+|+|||++ ..++.+|+.++.++++|+|+++||+|+||+|+++||+++|+++ T Consensus 227 fl~EY~~i~~~s~l~~~lFlgg~~~------------~~~~~~k~~~~~~~~i~iR~~~PR~R~Dqlm~~~Wk~llPl~l 294 (314) T MTH00218 227 FLAEYMNILFMNTLSVILFLGSSLT------------LLSLMLKATLLVFLFLWVRASYPRFRYDQLMHLAWKNFLPLVL 294 (314) T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHH------------HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH T ss_conf 9999999999999999999674276------------8999999999999999999637316499999988899999999 Q ss_pred HHHHHHHHHHHHHH Q ss_conf 99999999999997 Q gi|254780860|r 332 AMVLIVSFFLKIYT 345 (348) Q Consensus 332 ~~~~~~~~~~~~~~ 345 (348) +|++++......+. T Consensus 295 ~~l~~~~~l~l~~~ 308 (314) T MTH00218 295 ALLLLHLSLPLAFG 308 (314) T ss_pred HHHHHHHHHHHHHC T ss_conf 99999999999977 No 15 >MTH00143 ND1 NADH dehydrogenase subunit 1; Provisional Probab=100.00 E-value=0 Score=641.97 Aligned_cols=304 Identities=42% Similarity=0.730 Sum_probs=288.3 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH Q ss_conf 99999999999999999999999999999997278998574453188899999998630546453540389858989999 Q gi|254780860|r 14 FMAIKSIVFLVGLLIFIAYVLLMDRKVWAAVQLRRGPNVVGPWGLLQSFADFLKFVFKEPIIPSKSNKILFLLAPLVSVI 93 (348) Q Consensus 14 ~~~i~~i~~~i~~l~~~~f~~~~eRKi~A~iQ~R~GP~~vg~~GilQp~~D~~KL~~Ke~i~p~~~~~~~f~~~P~i~~~ 93 (348) ..+++.+..++.++++++|+||+|||++||+|+|+||||+|+.|++||++|++||+.||++.|+++|++.|..+|.++++ T Consensus 2 ~~li~~~~~~~~vl~~vaf~~l~ERKi~a~~Q~R~GP~~vg~~GllQp~aD~~KLl~Ke~i~p~~~~~~~f~~aP~i~~~ 81 (306) T MTH00143 2 VELLSSVVTYVCVLLAVAFFTLLERKGLGYFQLRKGPNKVGLMGLPQPLADAVKLFSKELVKPTLSNKFLFFLAPFLSLF 81 (306) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH T ss_conf 88999999999999999999999999999976571809778654459999999998866777530059999997999999 Q ss_pred HHHHHHHCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 99866531878552356405057899999999999999998751244321012334431013678766899999999823 Q gi|254780860|r 94 LSLSAWAVVPVADGWIIADINVGILYILAISSLEIYGIIIGGWASNSKYAFLGALRSAAQMISYEVSIGLVIVTVVLCAG 173 (348) Q Consensus 94 ~~~~~~~~iP~~~~~~~~~~~~~ll~~~~l~sl~~~~i~l~G~~S~s~ys~iG~~R~~~q~isyE~~l~l~i~~~~l~~g 173 (348) ++...|.++|.+. ...+.+.+++++++++++++++++++||+||||||.+|+.|+++|++|||+|+.++++++++.+| T Consensus 82 ~~~~~~~~~P~~~--~~~~~~~~ll~~l~l~sl~~~~~~l~Gw~S~skYs~lG~~R~~~q~iSYEi~l~l~~l~~~~~~g 159 (306) T MTH00143 82 LALLLWQLYPSYF--SCSYFGWGMLLFLCVSSLNVYGVMLAGWSSNSKYALLGAVRAVAQSISYEVSMSLILLFPLLLSG 159 (306) T ss_pred HHHHHHHCCCCCC--CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 9988870234666--41003410689998888888987760566888332406759998656664779999999999807 Q ss_pred CCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCHHHHHH Q ss_conf 78989999985100002211112446669999998999999997687543010035760888898754302320115889 Q gi|254780860|r 174 SLNLTDIVYSQKSGLGTFLGFPPSMLDWYWLALFPMFVVFFISLLAETNRPPFDLSEAESELVAGYMVEYSSTPYLLFML 253 (348) Q Consensus 174 s~~~~~iv~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~lae~~R~PFD~~EaEsELv~G~~tEYsG~~~~l~~l 253 (348) |+|+.+++++|.+ .|+.+.+++++++|+++++||+||.|||+||||||+|+|++|||||.+|+++++ T Consensus 160 s~~l~~i~~~q~~-------------~~~~~~~~~~~~~~~i~~lae~~R~PFDl~EaEsELVsG~~tEYsG~~f~l~fl 226 (306) T MTH00143 160 SFSFQEVSESQFS-------------VWLGFLNFPVMLMWFVSCLAETNRAPFDFAEGESELVSGFNVEYGGGGFALLFL 226 (306) T ss_pred CCHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCCCHHHHCCHHHHHHHH T ss_conf 7516899998888-------------999999999999999999999788999999764000341212315678999999 Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999732365543122366665689999999999999999999741012549999885427899999999 Q gi|254780860|r 254 AEYSTIVLMCTLASILFLGGWLPPFDISLFKSIPGFFWLVFKTLGLFFMVAMVKAFVPRYRYDQLMRLGWKVFLPLSFAM 333 (348) Q Consensus 254 ~ey~~~~~~s~l~~~lFlGg~~~p~~~~~~~~l~~~~~~~~k~~~~~~~~i~ir~~~pR~R~Dq~~~~~Wk~llpl~l~~ 333 (348) +||.+++++|++.+.+|+|||.++ +.+..|+.+|+..+.++++|+|+++||+|+||+|+++||+++|++++| T Consensus 227 ~ey~~~~~~s~l~~~lFlGg~~~~--------~~~~~~~~~k~~~~~~~~i~iR~~~PR~R~Dqlm~l~Wk~llPl~l~~ 298 (306) T MTH00143 227 AEYGNILFMSVLTVVLFFGGSVFS--------LLSGILFSLKVLLFAFLFIWVRASYPRYRYDLLMMLCWKSFLPFSLSI 298 (306) T ss_pred HHHHHHHHHHHHHHHHHHCCCHHH--------HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH T ss_conf 999999999999999985651212--------367999999999999999999863712649999998879999999999 Q ss_pred HHHHHHH Q ss_conf 9999999 Q gi|254780860|r 334 VLIVSFF 340 (348) Q Consensus 334 ~~~~~~~ 340 (348) ++++.+. T Consensus 299 l~~~~~l 305 (306) T MTH00143 299 LVLFVLL 305 (306) T ss_pred HHHHHHH T ss_conf 9999997 No 16 >MTH00193 ND1 NADH dehydrogenase subunit 1; Provisional Probab=100.00 E-value=0 Score=635.86 Aligned_cols=303 Identities=44% Similarity=0.801 Sum_probs=286.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH Q ss_conf 99999999999999999999999999999999972789985744531888999999986305464535403898589899 Q gi|254780860|r 12 LFFMAIKSIVFLVGLLIFIAYVLLMDRKVWAAVQLRRGPNVVGPWGLLQSFADFLKFVFKEPIIPSKSNKILFLLAPLVS 91 (348) Q Consensus 12 ~~~~~i~~i~~~i~~l~~~~f~~~~eRKi~A~iQ~R~GP~~vg~~GilQp~~D~~KL~~Ke~i~p~~~~~~~f~~~P~i~ 91 (348) ++.++++.+..++.+++.++|+||.|||++||+|+|+||||+|+.|++||++|++||+.||++.|+++|++.|..+|.++ T Consensus 1 ~l~~~~~~l~~~~~vl~~vaf~tl~ERKila~~Q~R~GP~~vg~~GllQp~aD~~KLl~Ke~i~p~~~~~~~f~~aP~~~ 80 (306) T MTH00193 1 MMMMLINFLLLIICVLVSVAFLTLLERKVLGYIQIRKGPNKVGFMGILQPFSDAIKLFTKEQTFPLMSNYLLYYFSPVFS 80 (306) T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH T ss_conf 98999999999999999999999999999999655808095786621488999999988567750122699999999999 Q ss_pred HHHHHHHHHCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99998665318785523564050578999999999999999987512443210123344310136787668999999998 Q gi|254780860|r 92 VILSLSAWAVVPVADGWIIADINVGILYILAISSLEIYGIIIGGWASNSKYAFLGALRSAAQMISYEVSIGLVIVTVVLC 171 (348) Q Consensus 92 ~~~~~~~~~~iP~~~~~~~~~~~~~ll~~~~l~sl~~~~i~l~G~~S~s~ys~iG~~R~~~q~isyE~~l~l~i~~~~l~ 171 (348) ++++.+.|.++|++.+ ..|.+.+++++++++++++++++++||+||||||.+|+.|+++|++|||+|+.++++++++. T Consensus 81 ~~~~~~~~~~iP~~~~--~~~~~~~ll~~l~l~sl~~~~~~l~Gw~S~skYs~iG~~R~~~q~iSyEv~l~l~i~~~~~~ 158 (306) T MTH00193 81 LFLSLLVWLIYPFLFG--LISFNLGILFFLCCSSLGVYTIMIAGWSSNSKYSLLGSLRSVAQTISYEVSLALILLSFIFL 158 (306) T ss_pred HHHHHHHHHHHHCCCH--HHHCCHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9999999999860122--45401899999999998988877202346887562738899999999889899999999999 Q ss_pred HCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCHHHH Q ss_conf 23789899999851000022111124466699999989999999976875430100357608888987543023201158 Q gi|254780860|r 172 AGSLNLTDIVYSQKSGLGTFLGFPPSMLDWYWLALFPMFVVFFISLLAETNRPPFDLSEAESELVAGYMVEYSSTPYLLF 251 (348) Q Consensus 172 ~gs~~~~~iv~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~lae~~R~PFD~~EaEsELv~G~~tEYsG~~~~l~ 251 (348) +||+|+.+++++|++ .|+.+.+++++++|+++++||+||.|||+||||||+|+|++|||||.+|+++ T Consensus 159 ~gs~~l~~i~~~q~~-------------~~~~~~~~~~~~~~~i~~laE~~R~PFDl~EaEsELVsG~~tEYsG~~f~l~ 225 (306) T MTH00193 159 IGSFNLLDFSLFQEY-------------IWFIFFMFPLFLIWLVSCLAETNRTPFDFAEGESELVSGFNVEYSSGGFALI 225 (306) T ss_pred HCCCCHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCHHHHHH T ss_conf 657869999999888-------------9999999999999999999996899999885509887205451075669999 Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 89999999999999997323655431223666656899999999999999999997410125499998854278999999 Q gi|254780860|r 252 MLAEYSTIVLMCTLASILFLGGWLPPFDISLFKSIPGFFWLVFKTLGLFFMVAMVKAFVPRYRYDQLMRLGWKVFLPLSF 331 (348) Q Consensus 252 ~l~ey~~~~~~s~l~~~lFlGg~~~p~~~~~~~~l~~~~~~~~k~~~~~~~~i~ir~~~pR~R~Dq~~~~~Wk~llpl~l 331 (348) +++||.++++++.+.+.+|+|||.+ ..|+.+|+.++.++++|+|+++||+|+||+|+++||+++|+++ T Consensus 226 fl~Ey~~~~~~s~l~~~lFlgg~~~------------~~~f~lk~~~~~~~~i~vR~~~pR~R~Dqlm~~~Wk~llpl~l 293 (306) T MTH00193 226 FLAEYSSILFMSMLTSLMFLGGDLL------------SLLFYLKLLFISFLFIWVRGTLPRFRYDKLMYLAWKSFLPLSL 293 (306) T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHH------------HHHHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHHHHHH T ss_conf 9999999999999999999575277------------8999999999999999998636012099999988999999999 Q ss_pred HHHHHHHHHH Q ss_conf 9999999999 Q gi|254780860|r 332 AMVLIVSFFL 341 (348) Q Consensus 332 ~~~~~~~~~~ 341 (348) +|+++....+ T Consensus 294 ~~l~~~~~l~ 303 (306) T MTH00193 294 NYLLFFFGLK 303 (306) T ss_pred HHHHHHHHHH T ss_conf 9999999999 No 17 >MTH00010 ND1 NADH dehydrogenase subunit 1; Validated Probab=100.00 E-value=0 Score=635.45 Aligned_cols=306 Identities=41% Similarity=0.711 Sum_probs=285.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH Q ss_conf 99999999999999999999999999999972789985744531888999999986305464535403898589899999 Q gi|254780860|r 15 MAIKSIVFLVGLLIFIAYVLLMDRKVWAAVQLRRGPNVVGPWGLLQSFADFLKFVFKEPIIPSKSNKILFLLAPLVSVIL 94 (348) Q Consensus 15 ~~i~~i~~~i~~l~~~~f~~~~eRKi~A~iQ~R~GP~~vg~~GilQp~~D~~KL~~Ke~i~p~~~~~~~f~~~P~i~~~~ 94 (348) ..++.+...+.+++.++|+|++|||++||+|+|+||||||+.|++||++|++||+.||++.|+++|+..|.++|.++++. T Consensus 5 ~~~~~l~~~i~~ll~vaf~tl~ERKila~~Q~R~GPn~vg~~GllQp~aD~~KLl~Ke~i~p~~~~~~~f~~aP~~~~~~ 84 (311) T MTH00010 5 FFTSILISYIMALLAMAFYTLLERKALGYFQLRKGPNKVGLMGIPQPFADAIKLFTKEQAKPMPANYTPFLLAPMMSLIL 84 (311) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH T ss_conf 99999999999999999999999999999654808096673564599999999987067775420499999999999999 Q ss_pred HHHHHHCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 98665318785523564050578999999999999999987512443210123344310136787668999999998237 Q gi|254780860|r 95 SLSAWAVVPVADGWIIADINVGILYILAISSLEIYGIIIGGWASNSKYAFLGALRSAAQMISYEVSIGLVIVTVVLCAGS 174 (348) Q Consensus 95 ~~~~~~~iP~~~~~~~~~~~~~ll~~~~l~sl~~~~i~l~G~~S~s~ys~iG~~R~~~q~isyE~~l~l~i~~~~l~~gs 174 (348) +...|.++|.+++.. +.+.+++++++++++++++++++||+||||||.+|+.|+++|++|||+|+.++++++++.+|| T Consensus 85 ~~~~~~~~P~~~~~~--~~~~~ll~~l~l~sl~~~~~~l~GwsS~skYs~iGa~R~~aq~iSYEv~l~l~~~~~~~~~~s 162 (311) T MTH00010 85 ALLLWSLYPFSHPSF--FLKFSVLYFLCISSMNVYTTLAAGWSSNSKYALLGALRSVAQTISYEVSMSLILLSALCLLLS 162 (311) T ss_pred HHHHHHHHCCCCCHH--HHCCHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 999998704565125--523029999998889998867025445886477407588999997788899999999999667 Q ss_pred CCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHH Q ss_conf 89899999851000022111124466699999989999999976875430100357608888987543023201158899 Q gi|254780860|r 175 LNLTDIVYSQKSGLGTFLGFPPSMLDWYWLALFPMFVVFFISLLAETNRPPFDLSEAESELVAGYMVEYSSTPYLLFMLA 254 (348) Q Consensus 175 ~~~~~iv~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~lae~~R~PFD~~EaEsELv~G~~tEYsG~~~~l~~l~ 254 (348) +|+.+++++|.. |..+..+|.+++|+++++||+||+|||++|||||+|+|+||||||.+|++++++ T Consensus 163 ~~l~~i~~~q~~--------------~~~~~~~p~~~~~~i~~laE~nR~PFDl~EaEsELVsG~~tEYsg~~f~l~fla 228 (311) T MTH00010 163 FDFSKMITNQYS--------------WILLMTIPLFFSWFITTLAETNRTPFDLAEGESELVSGFNVEYSSGLFALIFMA 228 (311) T ss_pred CCHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHEEEHHHCCCHHHHHHHHH T ss_conf 869999999999--------------999999999999999999983899999886526562121232178789999999 Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999997323655431223666656899999999999999999997410125499998854278999999999 Q gi|254780860|r 255 EYSTIVLMCTLASILFLGGWLPPFDISLFKSIPGFFWLVFKTLGLFFMVAMVKAFVPRYRYDQLMRLGWKVFLPLSFAMV 334 (348) Q Consensus 255 ey~~~~~~s~l~~~lFlGg~~~p~~~~~~~~l~~~~~~~~k~~~~~~~~i~ir~~~pR~R~Dq~~~~~Wk~llpl~l~~~ 334 (348) ||.+++++|.+.+.+|+||+.++ ..+..++.+|+..+.++++|+|+++||+|+||+|+++||+++|++++|+ T Consensus 229 EY~~~~~~s~l~~~lFlg~~~~~--------~~~~~~~~lk~~~~~~~~i~iR~~~PR~R~Dqlm~l~Wk~llPlsl~~l 300 (311) T MTH00010 229 EYANILIMCLFSSAIFMSSSPTF--------FISDAMLILKTFTLAFLFVWIRATFPRMRYDHLMNLTWKSFLPMSLTSL 300 (311) T ss_pred HHHHHHHHHHHHHHHHCCCCCHH--------HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999999972877301--------4789999999999999999999827446199989987899999999999 Q ss_pred HHHHHHHHHH Q ss_conf 9999999999 Q gi|254780860|r 335 LIVSFFLKIY 344 (348) Q Consensus 335 ~~~~~~~~~~ 344 (348) +++..++.++ T Consensus 301 ~~~~~i~l~~ 310 (311) T MTH00010 301 MISISIMLLF 310 (311) T ss_pred HHHHHHHHHH T ss_conf 9999999996 No 18 >MTH00195 ND1 NADH dehydrogenase subunit 1; Provisional Probab=100.00 E-value=0 Score=639.62 Aligned_cols=305 Identities=44% Similarity=0.800 Sum_probs=289.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH Q ss_conf 99999999999999999999999999999999972789985744531888999999986305464535403898589899 Q gi|254780860|r 12 LFFMAIKSIVFLVGLLIFIAYVLLMDRKVWAAVQLRRGPNVVGPWGLLQSFADFLKFVFKEPIIPSKSNKILFLLAPLVS 91 (348) Q Consensus 12 ~~~~~i~~i~~~i~~l~~~~f~~~~eRKi~A~iQ~R~GP~~vg~~GilQp~~D~~KL~~Ke~i~p~~~~~~~f~~~P~i~ 91 (348) ++..+++.+..++.++++++|+||+|||++||+|+|+||||||+.|++||++|+.||+.||++.|+++|+..|..+|.+. T Consensus 1 m~~~~i~~l~~~i~~ll~vaf~tl~ERKi~a~~Q~R~GP~~vg~~GllQp~~D~~KLl~Ke~i~p~~~~~~~f~~aP~i~ 80 (307) T MTH00195 1 MILSIIYFLIQIVPILLAVAFFTLLERKVLGYIQLRKGPNKVGPYGLLQPIADAVKLLLKELVSPSNSNKWGFLLAPILG 80 (307) T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH T ss_conf 96999999999999999999999999999999974808085674464699999999988088276653178999989999 Q ss_pred HHHHHHHHHCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99998665318785523564050578999999999999999987512443210123344310136787668999999998 Q gi|254780860|r 92 VILSLSAWAVVPVADGWIIADINVGILYILAISSLEIYGIIIGGWASNSKYAFLGALRSAAQMISYEVSIGLVIVTVVLC 171 (348) Q Consensus 92 ~~~~~~~~~~iP~~~~~~~~~~~~~ll~~~~l~sl~~~~i~l~G~~S~s~ys~iG~~R~~~q~isyE~~l~l~i~~~~l~ 171 (348) ++.+.+.|..+|.+.+ ..|.+.+++++++++++++++++++||+||||||.+|+.|+++|++|||+|+.++++++++. T Consensus 81 ~~~~~~~~~~~p~~~~--~~~~~~~ll~~l~l~sl~~~~~~l~GwsS~skys~lG~~R~~~q~iSYEi~l~l~~l~~~~~ 158 (307) T MTH00195 81 LVLALIFWVNIPSPFG--FSSLNYGVLFFLCVSSLSVYSTLMSGWASNSKYALLGAIRAVAQTISYEVSMGLIILCPLLL 158 (307) T ss_pred HHHHHHHHHCCCCCCC--CEECCHHHHHHHHHHHHHHHHHCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9999988850246755--40134348999998500455302147767882214147799988767768699999999999 Q ss_pred HCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCHHHH Q ss_conf 23789899999851000022111124466699999989999999976875430100357608888987543023201158 Q gi|254780860|r 172 AGSLNLTDIVYSQKSGLGTFLGFPPSMLDWYWLALFPMFVVFFISLLAETNRPPFDLSEAESELVAGYMVEYSSTPYLLF 251 (348) Q Consensus 172 ~gs~~~~~iv~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~lae~~R~PFD~~EaEsELv~G~~tEYsG~~~~l~ 251 (348) +||+|+.+++++|.+ .|+.+.+++++++|+++++||+||.|||+||||||||+|++|||||.+|+++ T Consensus 159 ~gs~~l~~i~~~q~~-------------~~~~~~~~~~~~i~~i~~laE~~R~PFDl~EaEsELVsG~~tEYsG~~f~l~ 225 (307) T MTH00195 159 AGSFDFEIMLISQSF-------------FWFVLLFPPISFMWYVSTLAETNRAPFDFAEGESELVSGFNVEYGGGPFALI 225 (307) T ss_pred HCCCCHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEHHHHCCHHHHHH T ss_conf 378879999999999-------------9999998789999999999996899999987876704556799735899999 Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 89999999999999997323655431223666656899999999999999999997410125499998854278999999 Q gi|254780860|r 252 MLAEYSTIVLMCTLASILFLGGWLPPFDISLFKSIPGFFWLVFKTLGLFFMVAMVKAFVPRYRYDQLMRLGWKVFLPLSF 331 (348) Q Consensus 252 ~l~ey~~~~~~s~l~~~lFlGg~~~p~~~~~~~~l~~~~~~~~k~~~~~~~~i~ir~~~pR~R~Dq~~~~~Wk~llpl~l 331 (348) +++||.++++++++.+.+|+|||+++ |+.+|+..+.++++|+|+++||+|+||+|+++||+++|+++ T Consensus 226 fl~Ey~~~~~~s~l~~~lFlGg~~~~-------------~~~~k~~~~~~~~i~vR~~~PR~R~Dqlm~~~Wk~llPl~l 292 (307) T MTH00195 226 FMAEYMNIIFMSVLTAILFFGGGSTI-------------MLWVKSLFVSFVFLWVRGSLPRFRYDQLMGLTWKCYLPLVL 292 (307) T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHH-------------HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH T ss_conf 99999999999999999985422789-------------99999999999999999727316399989988899999999 Q ss_pred HHHHHHHHHHHHH Q ss_conf 9999999999999 Q gi|254780860|r 332 AMVLIVSFFLKIY 344 (348) Q Consensus 332 ~~~~~~~~~~~~~ 344 (348) +|++++..++..+ T Consensus 293 ~~l~~~~~l~~~~ 305 (307) T MTH00195 293 SLLIVLIVLMFAL 305 (307) T ss_pred HHHHHHHHHHHHH T ss_conf 9999999999980 No 19 >MTH00159 consensus Probab=100.00 E-value=0 Score=635.05 Aligned_cols=301 Identities=44% Similarity=0.775 Sum_probs=285.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH Q ss_conf 99999999999999999999999999999972789985744531888999999986305464535403898589899999 Q gi|254780860|r 15 MAIKSIVFLVGLLIFIAYVLLMDRKVWAAVQLRRGPNVVGPWGLLQSFADFLKFVFKEPIIPSKSNKILFLLAPLVSVIL 94 (348) Q Consensus 15 ~~i~~i~~~i~~l~~~~f~~~~eRKi~A~iQ~R~GP~~vg~~GilQp~~D~~KL~~Ke~i~p~~~~~~~f~~~P~i~~~~ 94 (348) ++++.+..++.+++.++|+||+|||++||+|+|+||||||+.|++||++|++||+.||+++|+++|+..|..+|.+++++ T Consensus 1 mli~~~~~~i~vl~~vaf~tl~ERKila~~Q~R~GP~~vg~~GllQp~aD~~KLl~Ke~i~p~~~~~~~f~~aP~~~~~~ 80 (307) T MTH00159 1 MLINYLLLIICVLVSVAFLTLLERKILGYIQIRKGPNKVGFMGILQPFSDAIKLFTKEQTYPLMSNFLLYYFSPVFSLFL 80 (307) T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH T ss_conf 95999999999999999999999999998546808095786621388899999998577675302588999878999999 Q ss_pred HHHHHHCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 98665318785523564050578999999999999999987512443210123344310136787668999999998237 Q gi|254780860|r 95 SLSAWAVVPVADGWIIADINVGILYILAISSLEIYGIIIGGWASNSKYAFLGALRSAAQMISYEVSIGLVIVTVVLCAGS 174 (348) Q Consensus 95 ~~~~~~~iP~~~~~~~~~~~~~ll~~~~l~sl~~~~i~l~G~~S~s~ys~iG~~R~~~q~isyE~~l~l~i~~~~l~~gs 174 (348) +.+.|.++|.+.+ ..|.+.+++++++++++++++++++||+||||||.+|+.|+++|++|||+|+.++++++++.+|| T Consensus 81 ~~~~~~~~P~~~~--~~~~~~~ll~~l~l~sl~~~~i~l~Gw~S~skYs~iG~~R~~~q~iSYEi~l~l~l~~~~~~~gs 158 (307) T MTH00159 81 SLLVWLLYPFNFN--LINFNLGILFFLCCSSLGVYTILIAGWSSNSKYALLGSLRGVAQTISYEVSLALILLSFIFLIGS 158 (307) T ss_pred HHHHHHHHHHCCH--HHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 9999999740220--12011889999999999999989830037996453368899989988889899999999999758 Q ss_pred CCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHH Q ss_conf 89899999851000022111124466699999989999999976875430100357608888987543023201158899 Q gi|254780860|r 175 LNLTDIVYSQKSGLGTFLGFPPSMLDWYWLALFPMFVVFFISLLAETNRPPFDLSEAESELVAGYMVEYSSTPYLLFMLA 254 (348) Q Consensus 175 ~~~~~iv~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~lae~~R~PFD~~EaEsELv~G~~tEYsG~~~~l~~l~ 254 (348) +|+.+++++|++ .|..+.+++++++|+++++||+||.|||+||||||+|+|++|||||.+|++++++ T Consensus 159 ~~l~~i~~~q~~-------------~~~~~~~~~~~~~~~i~~laE~~R~PFD~~EaEsELVsG~~tEYsg~~fal~fl~ 225 (307) T MTH00159 159 YNLLDFSKYQKY-------------FWFIFFMFPLFLIWLVSCLAETNRTPFDFAEGESELVSGFNIEYSSGGFALIFLA 225 (307) T ss_pred CCHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCCCHHHHHHHHH T ss_conf 879999999878-------------8899999999999999999996799999885528884562031175768999999 Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999997323655431223666656899999999999999999997410125499998854278999999999 Q gi|254780860|r 255 EYSTIVLMCTLASILFLGGWLPPFDISLFKSIPGFFWLVFKTLGLFFMVAMVKAFVPRYRYDQLMRLGWKVFLPLSFAMV 334 (348) Q Consensus 255 ey~~~~~~s~l~~~lFlGg~~~p~~~~~~~~l~~~~~~~~k~~~~~~~~i~ir~~~pR~R~Dq~~~~~Wk~llpl~l~~~ 334 (348) ||.++++++++++.+|+|||.+ ..|+.+|+.++.++++|+|+++||+|+||+++++||+++|++++|+ T Consensus 226 Ey~~~~~~s~l~~~lFlgg~~~------------~~~f~lk~~~~~~~~i~vR~~~PR~R~Dqlm~l~Wk~llPl~l~~l 293 (307) T MTH00159 226 EYSSILFMSMLFSIMFLGGDPL------------SILFYLKLLFISFLFIWVRGTLPRFRYDKLMYLAWKSFLPFSLNYL 293 (307) T ss_pred HHHHHHHHHHHHHHHHHCCCHH------------HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9999999999999999685378------------8999999999999999999716221099999988899999999999 Q ss_pred HHHHHHHH Q ss_conf 99999999 Q gi|254780860|r 335 LIVSFFLK 342 (348) Q Consensus 335 ~~~~~~~~ 342 (348) ++....+. T Consensus 294 ~~~~~~~~ 301 (307) T MTH00159 294 LFFFGLKI 301 (307) T ss_pred HHHHHHHH T ss_conf 99999999 No 20 >MTH00058 ND1 NADH dehydrogenase subunit 1; Provisional Probab=100.00 E-value=0 Score=622.74 Aligned_cols=292 Identities=31% Similarity=0.524 Sum_probs=271.8 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH Q ss_conf 99999999999999999999999999999999727899857445318889999999863054645354038985898999 Q gi|254780860|r 13 FFMAIKSIVFLVGLLIFIAYVLLMDRKVWAAVQLRRGPNVVGPWGLLQSFADFLKFVFKEPIIPSKSNKILFLLAPLVSV 92 (348) Q Consensus 13 ~~~~i~~i~~~i~~l~~~~f~~~~eRKi~A~iQ~R~GP~~vg~~GilQp~~D~~KL~~Ke~i~p~~~~~~~f~~~P~i~~ 92 (348) +..+++.+..++.++++++|+||.|||++||+|+|+||||||+.|++||++|++||++||++.|+++|+..+..+|.+.+ T Consensus 3 ~~~li~~l~~~l~vll~vaf~tl~ERKvla~iQ~R~GPn~vg~~GllQp~aD~~KLl~Ke~i~~~~~~~~~~~~~~~~~~ 82 (296) T MTH00058 3 IFGLVSGLEGLLLILLLVAFFILGERKVLGYIQLRKGPNKVGIVGLLQSFADLLKLVVKFKVFGFQSRSWFSLFGVFLLV 82 (296) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH T ss_conf 99999999999999999999999999999998758080846854444888999999894646654368899999899999 Q ss_pred HHHHHHHHCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99986653187855235640505789999999999999999875124432101233443101367876689999999982 Q gi|254780860|r 93 ILSLSAWAVVPVADGWIIADINVGILYILAISSLEIYGIIIGGWASNSKYAFLGALRSAAQMISYEVSIGLVIVTVVLCA 172 (348) Q Consensus 93 ~~~~~~~~~iP~~~~~~~~~~~~~ll~~~~l~sl~~~~i~l~G~~S~s~ys~iG~~R~~~q~isyE~~l~l~i~~~~l~~ 172 (348) .++...|...|.. ....|.+.+++++++++++++|+++++||+||||||.+|+.|+++|++|||+|++++++.+++.+ T Consensus 83 ~~~~~~~~~~~~~--~~~~~~~~~ll~~l~l~sl~vy~ill~GwsSnskYs~lG~~R~~aQ~ISYEv~l~l~~l~~~l~~ 160 (296) T MTH00058 83 LLVVFYCFIYGSY--YSGSYSSLSLLWFLVVTSFSSYSLLCVGWGSYNKYSLLSSIRSAFGSVSFEACFMCIVIFCGLCY 160 (296) T ss_pred HHHHHHHHHHCCC--CHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9999999983367--53321228999999997014765350187526688877999999999888999999999999982 Q ss_pred CCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCHHHHH Q ss_conf 37898999998510000221111244666999999899999999768754301003576088889875430232011588 Q gi|254780860|r 173 GSLNLTDIVYSQKSGLGTFLGFPPSMLDWYWLALFPMFVVFFISLLAETNRPPFDLSEAESELVAGYMVEYSSTPYLLFM 252 (348) Q Consensus 173 gs~~~~~iv~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~lae~~R~PFD~~EaEsELv~G~~tEYsG~~~~l~~ 252 (348) ||+|..++++.|. |.++.+|+++++|+++++||+||+|||+||||||||+|+||||||.+|++++ T Consensus 161 gs~~~~~~~~~~~---------------~~~~~~p~~fiif~i~~lAE~nR~PFDl~EaESELVsG~~tEYsg~~F~l~f 225 (296) T MTH00058 161 GSYSLVDFFSSIW---------------SSILIFPLIYILWLVCILCETNRTPFDYGESESELVSGFNTEYSGIYFTCLF 225 (296) T ss_pred CCCCHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCEEEEECCHHHHHHH T ss_conf 8992899999999---------------9999999999999999999848999998740367750000134665889999 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999973236554312236666568999999999999999999974101254999988542789999999 Q gi|254780860|r 253 LAEYSTIVLMCTLASILFLGGWLPPFDISLFKSIPGFFWLVFKTLGLFFMVAMVKAFVPRYRYDQLMRLGWKVFLPLSFA 332 (348) Q Consensus 253 l~ey~~~~~~s~l~~~lFlGg~~~p~~~~~~~~l~~~~~~~~k~~~~~~~~i~ir~~~pR~R~Dq~~~~~Wk~llpl~l~ 332 (348) ++||.+++++|++.+.+|+|||.++ .|.....++++|+|+++||+|+||+|+++||+++|++++ T Consensus 226 l~EY~~~~~~s~l~~~lFlGg~~~~----------------~~~~~~~~~~iw~R~~~PR~R~Dqlm~l~Wk~lLPlsl~ 289 (296) T MTH00058 226 ACEYLIIFIFSWLSSVLFFGGGFVL----------------IMLLFHLLFFMWARGTLPRVRYDYFVNFFWEYCLVLLIL 289 (296) T ss_pred HHHHHHHHHHHHHHHHHHHCCHHHH----------------HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH T ss_conf 9999999999999999996336889----------------999999999999997286166999899778999999999 Q ss_pred HHHHH Q ss_conf 99999 Q gi|254780860|r 333 MVLIV 337 (348) Q Consensus 333 ~~~~~ 337 (348) |++++ T Consensus 290 ~l~~~ 294 (296) T MTH00058 290 SLFVI 294 (296) T ss_pred HHHEE T ss_conf 88246 No 21 >KOG4770 consensus Probab=100.00 E-value=0 Score=606.93 Aligned_cols=309 Identities=50% Similarity=0.919 Sum_probs=290.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH Q ss_conf 99999999999999999999999999999999727899857445318889999999863054645354038985898999 Q gi|254780860|r 13 FFMAIKSIVFLVGLLIFIAYVLLMDRKVWAAVQLRRGPNVVGPWGLLQSFADFLKFVFKEPIIPSKSNKILFLLAPLVSV 92 (348) Q Consensus 13 ~~~~i~~i~~~i~~l~~~~f~~~~eRKi~A~iQ~R~GP~~vg~~GilQp~~D~~KL~~Ke~i~p~~~~~~~f~~~P~i~~ 92 (348) +......+..+++++.+++|.+|.|||++|.+|+|+||||||+.|++||++|+.||++||+..|.++|...|.++|.+++ T Consensus 3 I~v~~~illlii~il~~vafl~l~ERkilg~iQ~RkGP~~vg~~GllQplaDg~KL~~KE~l~P~~sn~~lf~i~P~~s~ 82 (315) T KOG4770 3 ILVLAMILLLIIPILQSVAFLTLLERKILGYIQNRKGPNKVGPMGLLQPLADGVKLLTKEQLTPLNSNEVLFLIAPGISF 82 (315) T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCHHHH T ss_conf 08899999999999999999999999999999862298613641014777778888851778777678423341437999 Q ss_pred HHHHHHHHCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99986653187855235640505789999999999999999875124432101233443101367876689999999982 Q gi|254780860|r 93 ILSLSAWAVVPVADGWIIADINVGILYILAISSLEIYGIIIGGWASNSKYAFLGALRSAAQMISYEVSIGLVIVTVVLCA 172 (348) Q Consensus 93 ~~~~~~~~~iP~~~~~~~~~~~~~ll~~~~l~sl~~~~i~l~G~~S~s~ys~iG~~R~~~q~isyE~~l~l~i~~~~l~~ 172 (348) ..++..|.++|+.. +..|.|.|++++++++|+++|+++++||+||||||.+||.|+++|++|||+++.++++++.+.. T Consensus 83 ~~~ll~w~~lPf~~--~l~~lnig~lf~la~ssl~vy~ilisGw~SnskYa~lGaLRA~AQsISYEvsl~LilLsiii~~ 160 (315) T KOG4770 83 VLSLLEWFVLPFFN--VLISLNIGLLFFLAISSLAVYTILISGWSSNSKYAFLGALRAAAQSISYEVSLALILLSIIILS 160 (315) T ss_pred HHHHHHHHHCCCCC--HHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 99999996167643--0133027799999986525264113211367605888899998766113365999999999983 Q ss_pred CCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCHHHHH Q ss_conf 37898999998510000221111244666999999899999999768754301003576088889875430232011588 Q gi|254780860|r 173 GSLNLTDIVYSQKSGLGTFLGFPPSMLDWYWLALFPMFVVFFISLLAETNRPPFDLSEAESELVAGYMVEYSSTPYLLFM 252 (348) Q Consensus 173 gs~~~~~iv~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~lae~~R~PFD~~EaEsELv~G~~tEYsG~~~~l~~ 252 (348) ||+|+++++.+|.+ .|+.+...|.+++|+++.+||+||.|||+||||+|+|+|+|+|||+..|+++| T Consensus 161 gs~n~~~i~~aQ~~-------------lW~li~~~P~~~m~~issLAEtnR~PFDl~EgE~ELVaGfnvEys~~~faLff 227 (315) T KOG4770 161 GSFNLSDIFVAQFN-------------LWLLIILFPFAIMFFISSLAETNRAPFDLPEGESELVAGFNVEYSSGGFALFF 227 (315) T ss_pred CCCCHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCEEECCCCEEEHH T ss_conf 87606899999989-------------99999998999999999999855899888642899860446354267522016 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999973236554312236666568999999999999999999974101254999988542789999999 Q gi|254780860|r 253 LAEYSTIVLMCTLASILFLGGWLPPFDISLFKSIPGFFWLVFKTLGLFFMVAMVKAFVPRYRYDQLMRLGWKVFLPLSFA 332 (348) Q Consensus 253 l~ey~~~~~~s~l~~~lFlGg~~~p~~~~~~~~l~~~~~~~~k~~~~~~~~i~ir~~~pR~R~Dq~~~~~Wk~llpl~l~ 332 (348) ++||.++..+|.+.+++|+|||.+......+. .++..|+....++++|+|+++||+|+||+|+++||.++|++++ T Consensus 228 laeY~nli~ms~l~t~lflggw~p~l~~elf~-----~~~~~k~~~~~fl~IwiR~t~PR~RyDqLM~L~Wk~fLpiSL~ 302 (315) T KOG4770 228 LAEYANLIFMSVLSTVLFLGGWSPYLILELFS-----FIFIFKTFLILFLFIWIRSTYPRYRYDQLMSLGWKKFLPISLA 302 (315) T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHH-----HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH T ss_conf 98888999999999984057775310178999-----9999999999999999983370556999998899998688999 Q ss_pred HHHHHHHHH Q ss_conf 999999999 Q gi|254780860|r 333 MVLIVSFFL 341 (348) Q Consensus 333 ~~~~~~~~~ 341 (348) +++.++.+. T Consensus 303 ~L~~~~~~~ 311 (315) T KOG4770 303 MLLFYASFF 311 (315) T ss_pred HHHHHHHHH T ss_conf 999998752 No 22 >MTH00090 ND1 NADH dehydrogenase subunit 1; Provisional Probab=100.00 E-value=0 Score=604.61 Aligned_cols=283 Identities=36% Similarity=0.665 Sum_probs=264.8 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH Q ss_conf 99999999999999999999999999972789985744531888999999986305464535403898589899999986 Q gi|254780860|r 18 KSIVFLVGLLIFIAYVLLMDRKVWAAVQLRRGPNVVGPWGLLQSFADFLKFVFKEPIIPSKSNKILFLLAPLVSVILSLS 97 (348) Q Consensus 18 ~~i~~~i~~l~~~~f~~~~eRKi~A~iQ~R~GP~~vg~~GilQp~~D~~KL~~Ke~i~p~~~~~~~f~~~P~i~~~~~~~ 97 (348) +.+..+++++++++|+||.|||++||+|+|+||||+|+.|++||++|++||++||++.|+++|+..|..+|.++++++.. T Consensus 2 ~~~~~~~~vl~~vaf~tl~ERK~la~~Q~R~GPn~vg~~GllQp~aD~~KLl~Ke~i~p~~~~~~~f~~~P~~~~~~~~~ 81 (285) T MTH00090 2 EVLLMMIFILQSIAFFTLYERHLLGLSQNRLGPNKVSFMGVLQAILDGVKLLKKEQLTPLNSSDLSFLLVPGVSFVVMYL 81 (285) T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH T ss_conf 21999999999999999999999999765818094683564499999999998467774521599999999999999999 Q ss_pred HHHCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH Q ss_conf 65318785523564050578999999999999999987512443210123344310136787668999999998237898 Q gi|254780860|r 98 AWAVVPVADGWIIADINVGILYILAISSLEIYGIIIGGWASNSKYAFLGALRSAAQMISYEVSIGLVIVTVVLCAGSLNL 177 (348) Q Consensus 98 ~~~~iP~~~~~~~~~~~~~ll~~~~l~sl~~~~i~l~G~~S~s~ys~iG~~R~~~q~isyE~~l~l~i~~~~l~~gs~~~ 177 (348) .|..+|.+.. ..|.+.+++++++++++++++++++||+||||||.+|+.|+++|++|||+|+.++++++++.+||+|. T Consensus 82 ~~~~iP~~~~--~~~~~~~ll~~l~l~sl~~~~i~l~Gw~S~skYs~iG~~R~~aq~iSYEi~l~l~~~~~~l~~gs~~~ 159 (285) T MTH00090 82 EWFVLPYFFD--FINFEYSVLFFLCLIGFSVYTTLLSGWVSKSKYSFLGAIRASSQSISYEIAFSLYLLCFILHNNSFCF 159 (285) T ss_pred HHHHCCCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH T ss_conf 9997146432--10565259999999988999999878543884145527589999999999999999999999777539 Q ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHH Q ss_conf 99999851000022111124466699999989999999976875430100357608888987543023201158899999 Q gi|254780860|r 178 TDIVYSQKSGLGTFLGFPPSMLDWYWLALFPMFVVFFISLLAETNRPPFDLSEAESELVAGYMVEYSSTPYLLFMLAEYS 257 (348) Q Consensus 178 ~~iv~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~lae~~R~PFD~~EaEsELv~G~~tEYsG~~~~l~~l~ey~ 257 (348) .+. +...+++++++|+++++||+||+|||++|||||||+|+||||||.+|++++++||. T Consensus 160 ~~~---------------------~~~~~~~~~~~f~i~~lae~nR~PFDl~EaEsELVsG~~tEYsg~~f~l~fl~EY~ 218 (285) T MTH00090 160 SSS---------------------FSLSLFVIYLPFLIMILAELNRAPFDFSEGESELVSGYNVEYSSVAFVLLFLSEYG 218 (285) T ss_pred HHH---------------------HHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCEEECCHHHHHHHHHHHH T ss_conf 999---------------------99999999999999999986899999884067887000002655789999999999 Q ss_pred HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999997323655431223666656899999999999999999997410125499998854278999999999999 Q gi|254780860|r 258 TIVLMCTLASILFLGGWLPPFDISLFKSIPGFFWLVFKTLGLFFMVAMVKAFVPRYRYDQLMRLGWKVFLPLSFAMVLIV 337 (348) Q Consensus 258 ~~~~~s~l~~~lFlGg~~~p~~~~~~~~l~~~~~~~~k~~~~~~~~i~ir~~~pR~R~Dq~~~~~Wk~llpl~l~~~~~~ 337 (348) ++++++.+.+++|+|++ ..|...+.++++|+|+++||+|+||+|+++||+++|+++.|++++ T Consensus 219 ~~~~~s~l~~~lFlg~~------------------~~~~~~~~~~~i~iR~~~PR~R~Dqlm~l~Wk~llPl~l~~l~~~ 280 (285) T MTH00090 219 SLIFFSVLMSFLFFKFS------------------FFMLFLIFSLLIFIRSCYPRFRYDMMMSLFWFKFLPLSLIFLGFF 280 (285) T ss_pred HHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999998589------------------999999999999999918507699999987899999999999999 Q ss_pred HHHH Q ss_conf 9999 Q gi|254780860|r 338 SFFL 341 (348) Q Consensus 338 ~~~~ 341 (348) ...+ T Consensus 281 ~~l~ 284 (285) T MTH00090 281 VVLF 284 (285) T ss_pred HHHH T ss_conf 9995 No 23 >COG0650 HyfC Formate hydrogenlyase subunit 4 [Energy production and conversion] Probab=100.00 E-value=0 Score=408.14 Aligned_cols=304 Identities=28% Similarity=0.404 Sum_probs=272.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH Q ss_conf 99999999999999999999999999999999972789985744531888999999986305464535403898589899 Q gi|254780860|r 12 LFFMAIKSIVFLVGLLIFIAYVLLMDRKVWAAVQLRRGPNVVGPWGLLQSFADFLKFVFKEPIIPSKSNKILFLLAPLVS 91 (348) Q Consensus 12 ~~~~~i~~i~~~i~~l~~~~f~~~~eRKi~A~iQ~R~GP~~vg~~GilQp~~D~~KL~~Ke~i~p~~~~~~~f~~~P~i~ 91 (348) +...++..+...+.++.....+.+++||+.||+|+|+||+ ++||++|.+|++.||.+.|.++. ++|+.+|++. T Consensus 3 ~~~~vi~~l~~~~~a~lv~~l~~GI~RKv~ARiq~R~GPp------i~Qp~~d~lKll~Ke~v~P~~s~-~lf~~~P~~~ 75 (309) T COG0650 3 MLMSVIGALLQLIIAFLVAPLLSGITRKVRARIQRRIGPP------ILQPYYDTLKLLGKETVIPASSG-WLFRLAPYLA 75 (309) T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC------CHHHHHHHHHHHHCCCCCCCCCH-HHHHHHHHHH T ss_conf 0899999999999999999998769999999996589997------00789999999611411678855-6999999999 Q ss_pred HHHHHHHHHCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99998665318785523564050578999999999999999987512443210123344310136787668999999998 Q gi|254780860|r 92 VILSLSAWAVVPVADGWIIADINVGILYILAISSLEIYGIIIGGWASNSKYAFLGALRSAAQMISYEVSIGLVIVTVVLC 171 (348) Q Consensus 92 ~~~~~~~~~~iP~~~~~~~~~~~~~ll~~~~l~sl~~~~i~l~G~~S~s~ys~iG~~R~~~q~isyE~~l~l~i~~~~l~ 171 (348) +....+....+|.+... ......|++.+.++.++..++..++|.+|+|||+.+|++||+.++...|+|+.+++++++.. T Consensus 76 ~g~~~~~a~iiPl~~~~-~l~~~~dii~~~~Ll~l~~~~~~l~~~~sGspf~~iGasR~~~~~~~~E~~l~~~~~~~~~~ 154 (309) T COG0650 76 LGTLLLLALIIPLVFVG-PLAPLGDLIVLLYLLELARFFLALAGLSSGSPFGGIGASRELTLIALVEPPLLLVLFALALV 154 (309) T ss_pred HHHHHHHHHHHCCCCCC-CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999981134555-76441229999999999999999852146998542039999999998768999999999999 Q ss_pred HCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCHHHH Q ss_conf 23789899999851000022111124466699999989999999976875430100357608888987543023201158 Q gi|254780860|r 172 AGSLNLTDIVYSQKSGLGTFLGFPPSMLDWYWLALFPMFVVFFISLLAETNRPPFDLSEAESELVAGYMVEYSSTPYLLF 251 (348) Q Consensus 172 ~gs~~~~~iv~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~lae~~R~PFD~~EaEsELv~G~~tEYsG~~~~l~ 251 (348) +||.|+++++.+|+.|++.... .....+++++++.+..|++|.|||++|+|+|+++|+++||||+++|+. T Consensus 155 ~gs~~i~~i~~~~~~h~~~~~s----------l~~vl~aia~fi~~~~e~gk~Pfdi~~~~~eI~eGpl~EysGk~lai~ 224 (309) T COG0650 155 AGSTNISDIVAYQAHHGPLLFS----------LPLVLAAIAFFILLFIETGKLPFDIAEAETEIIEGPLTEYSGKLLALL 224 (309) T ss_pred HCCCCHHHHHHHHHHCCCHHCC----------HHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHH T ss_conf 5688799999888626560036----------779999999999999990899887421478885130555325676999 Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 89999999999999997323655431223666656899999999999999999997410125499998854278999999 Q gi|254780860|r 252 MLAEYSTIVLMCTLASILFLGGWLPPFDISLFKSIPGFFWLVFKTLGLFFMVAMVKAFVPRYRYDQLMRLGWKVFLPLSF 331 (348) Q Consensus 252 ~l~ey~~~~~~s~l~~~lFlGg~~~p~~~~~~~~l~~~~~~~~k~~~~~~~~i~ir~~~pR~R~Dq~~~~~Wk~llpl~l 331 (348) +++|+.|.++..++++.+|+|+|..+-. ....+...++.+.|..++..+...+|+++||+|+||..++.|+...-..+ T Consensus 225 ~~a~~ik~f~l~~lf~~vFlgp~~~~~~--~~~~l~~iv~~l~k~lvl~vi~a~~~~~~~rlr~~q~~~~~~~~~~~~~l 302 (309) T COG0650 225 KWAEAIKQFVLLSLFVNVFLGPWGLIET--IIAGLTALVVTLLKALVLTVLAALFEATLARLRLFQVVKFLWTAFFLAAL 302 (309) T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9999999999999999998255323431--35679999999999999999999998641652187776799999999999 Q ss_pred HHHH Q ss_conf 9999 Q gi|254780860|r 332 AMVL 335 (348) Q Consensus 332 ~~~~ 335 (348) .+.+ T Consensus 303 ~~~~ 306 (309) T COG0650 303 AFAL 306 (309) T ss_pred HHHH T ss_conf 9999 No 24 >TIGR01972 NDH_I_M proton-translocating NADH-quinone oxidoreductase, chain M; InterPro: IPR010227 This entry describes the 13th (based on Escherichia coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex.; GO: 0008137 NADH dehydrogenase (ubiquinone) activity, 0042773 ATP synthesis coupled electron transport. Probab=93.44 E-value=0.54 Score=25.01 Aligned_cols=136 Identities=20% Similarity=0.385 Sum_probs=88.3 Q ss_pred HCCHHHHHHHHHHHHHHHHHHHHHHH-----CCCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---- Q ss_conf 05057899999999999999998751-----2443---------21012334431013678766899999999823---- Q gi|254780860|r 112 DINVGILYILAISSLEIYGIIIGGWA-----SNSK---------YAFLGALRSAAQMISYEVSIGLVIVTVVLCAG---- 173 (348) Q Consensus 112 ~~~~~ll~~~~l~sl~~~~i~l~G~~-----S~s~---------ys~iG~~R~~~q~isyE~~l~l~i~~~~l~~g---- 173 (348) ..|.-++|++.=..+-+..++++-|+ -+++ |++.| -+.+..+++......| T Consensus 139 A~D~~LFY~FwE~~LiPmyllIg~WGdka~~g~~R~yAA~KFfLYTl~G-----------SvlML~a~l~l~~~~g~~~~ 207 (532) T TIGR01972 139 ALDLLLFYVFWEAMLIPMYLLIGVWGDKAEAGPNRIYAAMKFFLYTLAG-----------SVLMLLAILGLYFLGGTQLL 207 (532) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHCCCCE T ss_conf 9989999999999998899998641100136465237889999999999-----------99999999999998234111 Q ss_pred --CCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--CCCCCHH-------HHHHHHHH Q ss_conf --789899999851000022111124466699999989999999976875430100--3576088-------88987543 Q gi|254780860|r 174 --SLNLTDIVYSQKSGLGTFLGFPPSMLDWYWLALFPMFVVFFISLLAETNRPPFD--LSEAESE-------LVAGYMVE 242 (348) Q Consensus 174 --s~~~~~iv~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~lae~~R~PFD--~~EaEsE-------Lv~G~~tE 242 (348) |+|+.+..+.+.+.. .-.+-.+++.|+++.-.++-=-||. +|+||+| +.+|..-- T Consensus 208 ~~tF~l~~l~~~~~~~~--------------~~~q~~Lf~aFf~aFAvK~PlfPlHTWLPDAH~~Apt~gSV~LaGvLlK 273 (532) T TIGR01972 208 ILTFDLAELLNQPVNLP--------------LSVQTWLFLAFFIAFAVKVPLFPLHTWLPDAHVEAPTAGSVILAGVLLK 273 (532) T ss_pred EECCCHHHHHCCCCCCH--------------HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHCCCCHHHHHHHHHHHHH T ss_conf 21034288740213641--------------9999999999999855224776653343203102774689999999998 Q ss_pred HCCCCHHHHHHH--------HHHHHHHHHHHHHHHHCCCC Q ss_conf 023201158899--------99999999999997323655 Q gi|254780860|r 243 YSSTPYLLFMLA--------EYSTIVLMCTLASILFLGGW 274 (348) Q Consensus 243 YsG~~~~l~~l~--------ey~~~~~~s~l~~~lFlGg~ 274 (348) -++ +|+++.+ +|...++...-.+...=|+| T Consensus 274 ~G~--YGflRf~LpLfPdas~~f~p~~~~L~~~~IiYgal 311 (532) T TIGR01972 274 MGT--YGFLRFNLPLFPDASLYFAPVLAALAVIAIIYGAL 311 (532) T ss_pred HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 888--99999876544999999999999999999999999 No 25 >PRK08668 NADH dehydrogenase subunit M; Validated Probab=78.47 E-value=4.7 Score=19.39 Aligned_cols=65 Identities=12% Similarity=0.099 Sum_probs=37.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH Q ss_conf 999999999999999987512443210123344310136787668999999998237898999998510 Q gi|254780860|r 118 LYILAISSLEIYGIIIGGWASNSKYAFLGALRSAAQMISYEVSIGLVIVTVVLCAGSLNLTDIVYSQKS 186 (348) Q Consensus 118 l~~~~l~sl~~~~i~l~G~~S~s~ys~iG~~R~~~q~isyE~~l~l~i~~~~l~~gs~~~~~iv~~q~~ 186 (348) +...-+++++.|.++ ++. ++.+.-++.|.......-...+.+.+..+...+||+|+.++.+...+ T Consensus 128 fvfwEl~~l~sylLI--~~~--~~~a~~Aa~kyfi~~~vG~~~~L~gi~lly~~~Gt~~~~~i~~~l~~ 192 (616) T PRK08668 128 FIFWEIAVLGSFMIV--PMG--KKESRKASLKYFVLSAIGAYAMLFAIFLIYAKYGTFSFDEISQALLN 192 (616) T ss_pred HHHHHHHHHHHHHHH--HHC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHC T ss_conf 999999999999977--729--83899999999999999999999999999999786349999999851 No 26 >pfam00361 Oxidored_q1 NADH-Ubiquinone/plastoquinone (complex I), various chains. This family is part of complex I which catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane. Probab=76.46 E-value=5.3 Score=19.04 Aligned_cols=97 Identities=15% Similarity=0.170 Sum_probs=51.0 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHH Q ss_conf 99999999999999875124432101233443101367876689999999982378989999985100002211112446 Q gi|254780860|r 120 ILAISSLEIYGIIIGGWASNSKYAFLGALRSAAQMISYEVSIGLVIVTVVLCAGSLNLTDIVYSQKSGLGTFLGFPPSML 199 (348) Q Consensus 120 ~~~l~sl~~~~i~l~G~~S~s~ys~iG~~R~~~q~isyE~~l~l~i~~~~l~~gs~~~~~iv~~q~~~~~~~~~~~~~~~ 199 (348) ..-+.+++.|. +.+.-.+++-+.-++.|......--...+...+......+||.|..++.+...+.. T Consensus 10 ~~El~~l~~y~--Li~~~~~~~~~~~Aa~ky~i~~~~~s~~lL~gi~~ly~~~gt~~~~~~~~~~~~~~----------- 76 (270) T pfam00361 10 GWELLGLPSYL--LIGFWGYSPRSLEASLKYFLYTALGSLFLLFGILYIYGLTGSLSFTLLFLFGLNSN----------- 76 (270) T ss_pred HHHHHHHHHHH--HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCH----------- T ss_conf 99999999999--98834999999999999999999999999999999999862226999986435634----------- Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCC--CCCCHH Q ss_conf 66999999899999999768754301003--576088 Q gi|254780860|r 200 DWYWLALFPMFVVFFISLLAETNRPPFDL--SEAESE 234 (348) Q Consensus 200 ~~~~~~~~~~~~~f~i~~lae~~R~PFD~--~EaEsE 234 (348) ....+....+++...+..-.||.. ||+++| T Consensus 77 -----~~~~~~~l~~~g~~~K~~~~PfH~Wlpday~~ 108 (270) T pfam00361 77 -----GLLLLSLLLLVAFLVKSPQFPFHFWLPDAHEG 108 (270) T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf -----89999999999999999486247557788579 No 27 >PRK12662 putative monovalent cation/H+ antiporter subunit D; Reviewed Probab=74.78 E-value=5.9 Score=18.77 Aligned_cols=102 Identities=22% Similarity=0.170 Sum_probs=60.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHH Q ss_conf 89999999999999999875124432101233443101367876689999999982378989999985100002211112 Q gi|254780860|r 117 ILYILAISSLEIYGIIIGGWASNSKYAFLGALRSAAQMISYEVSIGLVIVTVVLCAGSLNLTDIVYSQKSGLGTFLGFPP 196 (348) Q Consensus 117 ll~~~~l~sl~~~~i~l~G~~S~s~ys~iG~~R~~~q~isyE~~l~l~i~~~~l~~gs~~~~~iv~~q~~~~~~~~~~~~ 196 (348) ++.+.=+++++.|.++.- .+++-+.-++.+.......-...+.+.+....-.+||+|+.++.+...+...+. T Consensus 135 ~fvf~E~~~i~sy~LI~~---~~~~~~~~aa~ky~i~~~~gs~~~L~gi~~ly~~~Gt~~~~~~~~~~~~~~~~~----- 206 (491) T PRK12662 135 IYVFLEISSISSYVLVAM---GKDKKALVAAFEYLIIGTIGATFYLIGIGFLYAITGTLNMGDMFLIIQDLPTNR----- 206 (491) T ss_pred HHHHHHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCH----- T ss_conf 999999999999999997---798899999999999999999999999999999966654999999977455443----- Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--CCCCCHH Q ss_conf 4466699999989999999976875430100--3576088 Q gi|254780860|r 197 SMLDWYWLALFPMFVVFFISLLAETNRPPFD--LSEAESE 234 (348) Q Consensus 197 ~~~~~~~~~~~~~~~~f~i~~lae~~R~PFD--~~EaEsE 234 (348) ....+....++....++.-.||. .|+|++| T Consensus 207 --------~~~~~~~~~~~gf~~K~~~~PfH~WlPda~~~ 238 (491) T PRK12662 207 --------AIQIGTLFIMVGLFIKAALFPFHKWLIQAYSE 238 (491) T ss_pred --------HHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCC T ss_conf --------99999999999999998071134560577777 No 28 >PRK12648 putative monovalent cation/H+ antiporter subunit A; Reviewed Probab=64.49 E-value=9.8 Score=17.42 Aligned_cols=91 Identities=13% Similarity=0.083 Sum_probs=48.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHH Q ss_conf 99999999999999998751244321012334431013678766899999999823789899999851000022111124 Q gi|254780860|r 118 LYILAISSLEIYGIIIGGWASNSKYAFLGALRSAAQMISYEVSIGLVIVTVVLCAGSLNLTDIVYSQKSGLGTFLGFPPS 197 (348) Q Consensus 118 l~~~~l~sl~~~~i~l~G~~S~s~ys~iG~~R~~~q~isyE~~l~l~i~~~~l~~gs~~~~~iv~~q~~~~~~~~~~~~~ 197 (348) =-.++-++++..+.+..+.+-+++.+..|+.=-+.-..-+...+.++.-.+.-.+||-++.+.-. T Consensus 296 KrlLAYSTVSqlG~i~~~iGlgt~~a~~aal~hli~Hal~Ka~LFl~aG~I~~~tGtrdl~~LgG--------------- 360 (950) T PRK12648 296 KGLLAYSTISHLGLITLLLGLGSPLAAVAAIFHIINHATFKASLFMAAGIIDHETGTRDMRRLSG--------------- 360 (950) T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCC--------------- T ss_conf 99999999999999999997366889999999999999999999999869999808700987199--------------- Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 466699999989999999976875430100 Q gi|254780860|r 198 MLDWYWLALFPMFVVFFISLLAETNRPPFD 227 (348) Q Consensus 198 ~~~~~~~~~~~~~~~f~i~~lae~~R~PFD 227 (348) ..-.+|.-+.++.++.++..+-+||. T Consensus 361 ----L~r~mP~ta~~~~iaalSmaGiPp~~ 386 (950) T PRK12648 361 ----LRRLMPITATLAMVAAAAMAGVPLLN 386 (950) T ss_pred ----CHHHHHHHHHHHHHHHHHHHCCCCCC T ss_conf ----14212899999999999984255203 No 29 >PRK12663 putative monovalent cation/H+ antiporter subunit D; Reviewed Probab=63.01 E-value=10 Score=17.26 Aligned_cols=94 Identities=16% Similarity=0.127 Sum_probs=52.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHH Q ss_conf 99999999999999998751244321012334431013678766899999999823789899999851000022111124 Q gi|254780860|r 118 LYILAISSLEIYGIIIGGWASNSKYAFLGALRSAAQMISYEVSIGLVIVTVVLCAGSLNLTDIVYSQKSGLGTFLGFPPS 197 (348) Q Consensus 118 l~~~~l~sl~~~~i~l~G~~S~s~ys~iG~~R~~~q~isyE~~l~l~i~~~~l~~gs~~~~~iv~~q~~~~~~~~~~~~~ 197 (348) +.+.=+++++.|.++.. |. ++-+.-++.|-......-...+...+....-.+||+|+.++.....+..... T Consensus 133 fvf~E~~~i~sy~Li~~-~~--~~~~~~Aa~ky~i~~~~gs~~~L~gi~~ly~~tGt~~~~~i~~~~~~~~~~~------ 203 (497) T PRK12663 133 YVWFEVMLLASFVLITL-GQ--SREQLRGAIKYVVLNLIGSWLFLLGIGLLYKVFGTLNMAHIAMRLNEMGDNA------ 203 (497) T ss_pred HHHHHHHHHHHHHHHHH-CC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCH------ T ss_conf 99999999999999996-89--8899999999999999999999999999999848976999999987446637------ Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 466699999989999999976875430100 Q gi|254780860|r 198 MLDWYWLALFPMFVVFFISLLAETNRPPFD 227 (348) Q Consensus 198 ~~~~~~~~~~~~~~~f~i~~lae~~R~PFD 227 (348) .....+.+++++...+..-.||. T Consensus 204 -------~~~~~~~l~l~gf~~K~~~~Pfh 226 (497) T PRK12663 204 -------TLTTIALLFLLAFSMKAALFPFM 226 (497) T ss_pred -------HHHHHHHHHHHHHHHHHHHHCCC T ss_conf -------99999999999999986630102 No 30 >PRK12644 putative monovalent cation/H+ antiporter subunit A; Reviewed Probab=62.09 E-value=11 Score=17.16 Aligned_cols=93 Identities=16% Similarity=0.155 Sum_probs=47.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHH Q ss_conf 78999999999999999987512443210123344310136787668999999998237898999998510000221111 Q gi|254780860|r 116 GILYILAISSLEIYGIIIGGWASNSKYAFLGALRSAAQMISYEVSIGLVIVTVVLCAGSLNLTDIVYSQKSGLGTFLGFP 195 (348) Q Consensus 116 ~ll~~~~l~sl~~~~i~l~G~~S~s~ys~iG~~R~~~q~isyE~~l~l~i~~~~l~~gs~~~~~iv~~q~~~~~~~~~~~ 195 (348) |+=-.++-++++..+.+..+.+-+++++..|+.=-+.--.-+...+.++.-.+.-.+||-|+.+.-. T Consensus 290 DlKrlLAYSTVSqLG~i~l~lGlgt~~a~~aa~~hll~HAlfKa~LFm~aG~i~h~tGtrdi~~LgG------------- 356 (968) T PRK12644 290 DLKLILAYGTVSQLGFLTVVVGLGTRDAALAGLAMLVAHALFKATLFLVVGIIDHQTGTRDIRKLSG------------- 356 (968) T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCC------------- T ss_conf 4899999988999999999986267999999999999999999999985638678708754888389------------- Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 24466699999989999999976875430100 Q gi|254780860|r 196 PSMLDWYWLALFPMFVVFFISLLAETNRPPFD 227 (348) Q Consensus 196 ~~~~~~~~~~~~~~~~~f~i~~lae~~R~PFD 227 (348) ..-.+|.-+.++.++.++..+-+||. T Consensus 357 ------L~r~mP~Ta~~~~iaalSmaGvPp~~ 382 (968) T PRK12644 357 ------LGRRSPPLAVVAALAAASMAGLPPLL 382 (968) T ss_pred ------HHHHHHHHHHHHHHHHHHHHCCCCCC T ss_conf ------55303999999999999985165102 No 31 >PRK02504 NAD(P)H-quinone oxidoreductase subunit 2; Provisional Probab=60.93 E-value=11 Score=17.03 Aligned_cols=95 Identities=18% Similarity=0.182 Sum_probs=46.6 Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCCCHHHHHHHHHHCCHHHHHHH Q ss_conf 89999999999999999875124432101233443101367876689999999-98237898999998510000221111 Q gi|254780860|r 117 ILYILAISSLEIYGIIIGGWASNSKYAFLGALRSAAQMISYEVSIGLVIVTVV-LCAGSLNLTDIVYSQKSGLGTFLGFP 195 (348) Q Consensus 117 ll~~~~l~sl~~~~i~l~G~~S~s~ys~iG~~R~~~q~isyE~~l~l~i~~~~-l~~gs~~~~~iv~~q~~~~~~~~~~~ 195 (348) ++...=+.+++.| .+.|+..+++.+.-++.+.......-...+...+..+. .-.|+.++.++.+...+... T Consensus 136 lfv~~El~sl~sY--~Li~~~~~~~~s~eAalKYfllg~~~s~~lL~Gi~llYg~t~g~~~l~~i~~~~~~~~~------ 207 (514) T PRK02504 136 IFISLETLSIASY--LLSGYMKRDPRSSEAALKYLLIGAASAAIFLYGSSLLYGLSGGSTQLDAIALALITSPS------ 207 (514) T ss_pred HHHHHHHHHHHHH--HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCC------ T ss_conf 9999999999999--99887549978999999999998888999999999999997076889999998755862------ Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 24466699999989999999976875430100 Q gi|254780860|r 196 PSMLDWYWLALFPMFVVFFISLLAETNRPPFD 227 (348) Q Consensus 196 ~~~~~~~~~~~~~~~~~f~i~~lae~~R~PFD 227 (348) .....+.+..++...-+..-.||. T Consensus 208 --------~~~~~~l~lil~G~~fK~a~~PfH 231 (514) T PRK02504 208 --------LLLALALVFVLAGIAFKIAAVPFH 231 (514) T ss_pred --------HHHHHHHHHHHHHHHHHHHHCCCC T ss_conf --------899999999999999997416654 No 32 >PRK08375 putative monovalent cation/H+ antiporter subunit D; Reviewed Probab=60.89 E-value=11 Score=17.03 Aligned_cols=102 Identities=17% Similarity=0.118 Sum_probs=62.4 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHH Q ss_conf 99999999999999998751244321012334431013678766899999999823789899999851000022111124 Q gi|254780860|r 118 LYILAISSLEIYGIIIGGWASNSKYAFLGALRSAAQMISYEVSIGLVIVTVVLCAGSLNLTDIVYSQKSGLGTFLGFPPS 197 (348) Q Consensus 118 l~~~~l~sl~~~~i~l~G~~S~s~ys~iG~~R~~~q~isyE~~l~l~i~~~~l~~gs~~~~~iv~~q~~~~~~~~~~~~~ 197 (348) +...-+++++.+.+ .++..++|-+.-++.|.......-...+...+......+||+|+.++.+...+.... T Consensus 132 ~v~~E~~~i~s~~L--i~~~~~~~~~~~aa~ky~i~~~~g~~~ll~gi~lly~~~Gt~~~~~l~~~~~~~~~~------- 202 (481) T PRK08375 132 FVFLEISSLSSYAL--VALGGKEGRAGAAAYKYLILGTIGSTFLLAGVGLLYGVTGTLNMADLAGRLPPVGAS------- 202 (481) T ss_pred HHHHHHHHHHHHHH--HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCC------- T ss_conf 99999999999999--996199789999999999999999999999999999880884199999987507664------- Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--CCCCCHH Q ss_conf 466699999989999999976875430100--3576088 Q gi|254780860|r 198 MLDWYWLALFPMFVVFFISLLAETNRPPFD--LSEAESE 234 (348) Q Consensus 198 ~~~~~~~~~~~~~~~f~i~~lae~~R~PFD--~~EaEsE 234 (348) .....++...+++...++.-.||. .|++++| T Consensus 203 ------~~~~~~~~ll~~g~~~K~~~~PfH~WLPda~~~ 235 (481) T PRK08375 203 ------RTVVAAFGFLVLGLALKAALFPLHTWLPDAYAA 235 (481) T ss_pred ------HHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCC T ss_conf ------799999999999999997252232231564446 No 33 >PRK12668 putative monovalent cation/H+ antiporter subunit D; Reviewed Probab=57.06 E-value=13 Score=16.63 Aligned_cols=100 Identities=18% Similarity=0.205 Sum_probs=56.4 Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHH Q ss_conf 99999999999999987512443210123344310136787668999999998237898999998510000221111244 Q gi|254780860|r 119 YILAISSLEIYGIIIGGWASNSKYAFLGALRSAAQMISYEVSIGLVIVTVVLCAGSLNLTDIVYSQKSGLGTFLGFPPSM 198 (348) Q Consensus 119 ~~~~l~sl~~~~i~l~G~~S~s~ys~iG~~R~~~q~isyE~~l~l~i~~~~l~~gs~~~~~iv~~q~~~~~~~~~~~~~~ 198 (348) -.++-++++..+.++.|.+.+++.+.-|+.=-+.-..-|...+.++.-++...+|+-|+.+.-. T Consensus 266 RlLAYStvsQlGym~~giGigt~la~~ga~~H~~nHa~~KalLFm~aGaV~~~tgt~~i~~lgG---------------- 329 (569) T PRK12668 266 RLLSYHIVSQVGYMVAGVGIGTALAINGAVAHAFNHILYKGLLFMSAGAVLYRTGTEKLTELGG---------------- 329 (569) T ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEHHHHCC---------------- T ss_conf 9999989989999999997351989999999999999999999998769989818703899499---------------- Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHH Q ss_conf 666999999899999999768754301003576088889 Q gi|254780860|r 199 LDWYWLALFPMFVVFFISLLAETNRPPFDLSEAESELVA 237 (348) Q Consensus 199 ~~~~~~~~~~~~~~f~i~~lae~~R~PFD~~EaEsELv~ 237 (348) ..-.+|.-+.++.++.++-.+-+||.==-++.++.+ T Consensus 330 ---L~k~MP~t~~~~~igalsi~GvPpfsGF~SK~mI~~ 365 (569) T PRK12668 330 ---LYKSMPLTTVFCIVGALSISAFPLFSGFVSKSMIIS 365 (569) T ss_pred ---HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH T ss_conf ---332218999999999999872623049999999999 No 34 >KOG1277 consensus Probab=53.71 E-value=9.1 Score=17.64 Aligned_cols=88 Identities=22% Similarity=0.217 Sum_probs=44.6 Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---CHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 99875124432101233443101367876689999999982378---989999985100002211112446669999998 Q gi|254780860|r 132 IIGGWASNSKYAFLGALRSAAQMISYEVSIGLVIVTVVLCAGSL---NLTDIVYSQKSGLGTFLGFPPSMLDWYWLALFP 208 (348) Q Consensus 132 ~l~G~~S~s~ys~iG~~R~~~q~isyE~~l~l~i~~~~l~~gs~---~~~~iv~~q~~~~~~~~~~~~~~~~~~~~~~~~ 208 (348) -..|+.|+|-|+.+|+-|=+-|++--- -+.+....++. |...|. ++.+.-..+........+|.....|. T Consensus 341 ~i~GY~~gs~Y~r~gG~~Wik~m~lta------~Lfp~~~~~t~~~~N~vai~-y~at~AlPfgt~v~v~~iw~fv~~PL 413 (593) T KOG1277 341 PINGYVSGSFYARLGGRRWIKNMLLTA------SLFPVPVFGTAFLLNTVAIA-YGATAALPFGTIVVVLLIWLFVISPL 413 (593) T ss_pred CCCCEECCCHHHHHCCHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHH-HCCCCCCCCCCHHHHHHHHHHHHCHH T ss_conf 645301332111324477999998874------13227899999999999998-24121267500699999999985649 Q ss_pred HHHHHHHHHHHHHHHCCCCCC Q ss_conf 999999997687543010035 Q gi|254780860|r 209 MFVVFFISLLAETNRPPFDLS 229 (348) Q Consensus 209 ~~~~f~i~~lae~~R~PFD~~ 229 (348) . .+=......+..|||.| T Consensus 414 ~---~~G~i~GkN~~~~~~~P 431 (593) T KOG1277 414 T---VLGGIAGKNRSGEFDAP 431 (593) T ss_pred H---HCCCCCCCCCCCCCCCC T ss_conf 7---70530155556778987 No 35 >PRK12650 putative monovalent cation/H+ antiporter subunit A; Reviewed Probab=51.62 E-value=16 Score=16.09 Aligned_cols=93 Identities=16% Similarity=0.240 Sum_probs=52.6 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHH Q ss_conf 78999999999999999987512443210123344310136787668999999998237898999998510000221111 Q gi|254780860|r 116 GILYILAISSLEIYGIIIGGWASNSKYAFLGALRSAAQMISYEVSIGLVIVTVVLCAGSLNLTDIVYSQKSGLGTFLGFP 195 (348) Q Consensus 116 ~ll~~~~l~sl~~~~i~l~G~~S~s~ys~iG~~R~~~q~isyE~~l~l~i~~~~l~~gs~~~~~iv~~q~~~~~~~~~~~ 195 (348) |+=-.++-++++..+.+..+.+-+++++..|+.=-+.-..-|.-.+.++.-.+.-.+||-++.+.-. T Consensus 295 DlKrlLAYSTVSqLG~i~l~lGlgt~~a~~aal~hlv~HAlfKa~LFm~aG~I~h~tGtrdi~~LgG------------- 361 (969) T PRK12650 295 DLKKLTAYSTVSQLGWIVATIGVGTPFALTAAIVHTLAHALFKSSLFMLVGVIDHQTGTRDIRRLGS------------- 361 (969) T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCC------------- T ss_conf 5899999998999999999985786779999999999999999999998608899826416988578------------- Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 24466699999989999999976875430100 Q gi|254780860|r 196 PSMLDWYWLALFPMFVVFFISLLAETNRPPFD 227 (348) Q Consensus 196 ~~~~~~~~~~~~~~~~~f~i~~lae~~R~PFD 227 (348) ..-.+|.-+.++.++.++..+-+||. T Consensus 362 ------L~r~mP~t~~~~~iaalSmaGvPp~~ 387 (969) T PRK12650 362 ------LWRQMPFTFVSVVIAALSMAAVPPTF 387 (969) T ss_pred ------HHHHHHHHHHHHHHHHHHHCCCCCCC T ss_conf ------66536999999999999982776211 No 36 >PRK07363 NAD(P)H-quinone oxidoreductase subunit M; Validated Probab=51.46 E-value=16 Score=16.08 Aligned_cols=98 Identities=11% Similarity=0.137 Sum_probs=45.2 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHH Q ss_conf 99999999999999875124432101233443101367876689999999982378989999985100002211112446 Q gi|254780860|r 120 ILAISSLEIYGIIIGGWASNSKYAFLGALRSAAQMISYEVSIGLVIVTVVLCAGSLNLTDIVYSQKSGLGTFLGFPPSML 199 (348) Q Consensus 120 ~~~l~sl~~~~i~l~G~~S~s~ys~iG~~R~~~q~isyE~~l~l~i~~~~l~~gs~~~~~iv~~q~~~~~~~~~~~~~~~ 199 (348) +.-+++++.|.++ +-|++.+ +...+.|.......-...+...++.....+|+.|.......+++.... T Consensus 135 f~E~~~i~sy~LI-~~~g~~~--~~~Aa~ky~i~~~~g~~~~L~~~~~l~~~~g~~~~~~~~~~~~~~~~~--------- 202 (499) T PRK07363 135 FYELELIPFYLLI-AIWGGEK--RGYASIKFLIYTAVSGLLVLAAFLGIVWLSGSTSFDYDAVSTQNLSLN--------- 202 (499) T ss_pred HHHHHHHHHHHHH-HCCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCH--------- T ss_conf 9999999999988-3689868--999999999999888999999999999996761678999997316423--------- Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCC--CCCCCCHH Q ss_conf 669999998999999997687543010--03576088 Q gi|254780860|r 200 DWYWLALFPMFVVFFISLLAETNRPPF--DLSEAESE 234 (348) Q Consensus 200 ~~~~~~~~~~~~~f~i~~lae~~R~PF--D~~EaEsE 234 (348) .....+..++++...+..-.|| -+|+|++| T Consensus 203 -----~~~~~~~l~l~gf~vK~~~~P~H~WLPdA~~~ 234 (499) T PRK07363 203 -----TQLILLTLLLLGFGIKIPLVPLHTWLPDAYTE 234 (499) T ss_pred -----HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCC T ss_conf -----89999999999999862616443044034145 No 37 >PRK12647 putative monovalent cation/H+ antiporter subunit A; Reviewed Probab=50.76 E-value=17 Score=16.01 Aligned_cols=93 Identities=17% Similarity=0.131 Sum_probs=65.4 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHH Q ss_conf 78999999999999999987512443210123344310136787668999999998237898999998510000221111 Q gi|254780860|r 116 GILYILAISSLEIYGIIIGGWASNSKYAFLGALRSAAQMISYEVSIGLVIVTVVLCAGSLNLTDIVYSQKSGLGTFLGFP 195 (348) Q Consensus 116 ~ll~~~~l~sl~~~~i~l~G~~S~s~ys~iG~~R~~~q~isyE~~l~l~i~~~~l~~gs~~~~~iv~~q~~~~~~~~~~~ 195 (348) |+=-.++-++++..+.++.|.+.+++.+..|+.=-+.-..-+...+.++.-.+.-.+||-++.+.-- T Consensus 282 DlKrlLAYSTVSqlG~i~l~lGlgt~~a~~aal~hl~~HalfKa~LFl~aG~i~~~tgtrdi~~LgG------------- 348 (761) T PRK12647 282 DLKLILAYSTVSALGTLVMLLGLGSELAIKAAVLFLVAHSLYKGALFMVAGIIDHETGTRDITKLGG------------- 348 (761) T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCC------------- T ss_conf 2889999999999999999987677899999999999999999999999999999948960777578------------- Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 24466699999989999999976875430100 Q gi|254780860|r 196 PSMLDWYWLALFPMFVVFFISLLAETNRPPFD 227 (348) Q Consensus 196 ~~~~~~~~~~~~~~~~~f~i~~lae~~R~PFD 227 (348) ..-.+|.-+.++.++.++-.+-+||. T Consensus 349 ------L~r~mP~T~~~~~iaalsmaGlPp~~ 374 (761) T PRK12647 349 ------LRRAMPITAAAALLAALSMAGLPPLF 374 (761) T ss_pred ------HHHHCHHHHHHHHHHHHHHCCCCCCC T ss_conf ------56306599999999999981785201 No 38 >PRK12665 putative monovalent cation/H+ antiporter subunit D; Reviewed Probab=50.50 E-value=17 Score=15.99 Aligned_cols=100 Identities=12% Similarity=0.175 Sum_probs=58.8 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHH Q ss_conf 78999999999999999987512443210123344310136787668999999998237898999998510000221111 Q gi|254780860|r 116 GILYILAISSLEIYGIIIGGWASNSKYAFLGALRSAAQMISYEVSIGLVIVTVVLCAGSLNLTDIVYSQKSGLGTFLGFP 195 (348) Q Consensus 116 ~ll~~~~l~sl~~~~i~l~G~~S~s~ys~iG~~R~~~q~isyE~~l~l~i~~~~l~~gs~~~~~iv~~q~~~~~~~~~~~ 195 (348) .++.+.-+++++.|.++..+ +++-+.-++.|.......-...+.+.+..+.-.+||+|+.++.....+.... T Consensus 135 nlfVf~Ev~~i~sy~Li~~~---~~~~~~~Aa~ky~i~~~~gs~~~L~gi~~ly~~tGtln~~~l~~~~~~~~~~----- 206 (524) T PRK12665 135 NLYVGFEVLLVASYVLLTLG---ATAARIRAGVTYVMVSMVSSLLFLIGIAMVYAATGTLNMADLAVRLDDLPEG----- 206 (524) T ss_pred HHHHHHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCH----- T ss_conf 99999999999999999957---9889999999999999999999999999999980887799999987408813----- Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--CCCCC Q ss_conf 24466699999989999999976875430100--35760 Q gi|254780860|r 196 PSMLDWYWLALFPMFVVFFISLLAETNRPPFD--LSEAE 232 (348) Q Consensus 196 ~~~~~~~~~~~~~~~~~f~i~~lae~~R~PFD--~~EaE 232 (348) .....+.+++++...+..-.||. +|++. T Consensus 207 ---------~~~~~~~lll~~f~~Kaa~fPlH~WLP~ay 236 (524) T PRK12665 207 ---------TRMALFAVLLVAFGIKAAVFPLSFWLPDSY 236 (524) T ss_pred ---------HHHHHHHHHHHHHHHHHHHHCCHHHHHHHH T ss_conf ---------899999999999999982712097875164 No 39 >COG2966 Uncharacterized conserved protein [Function unknown] Probab=49.40 E-value=18 Score=15.88 Aligned_cols=48 Identities=31% Similarity=0.368 Sum_probs=30.2 Q ss_pred HCCCCCCCCCHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC Q ss_conf 30100357608888987-5430232011588999999999999999732365543 Q gi|254780860|r 223 RPPFDLSEAESELVAGY-MVEYSSTPYLLFMLAEYSTIVLMCTLASILFLGGWLP 276 (348) Q Consensus 223 R~PFD~~EaEsELv~G~-~tEYsG~~~~l~~l~ey~~~~~~s~l~~~lFlGg~~~ 276 (348) +-=.|.-|||.++-... ...+.++.+..++.+ +.+..+..+|-|+|.. T Consensus 101 ~~~~~~e~a~~~l~~i~~~~~~y~~~l~~~~~g------~~~~~f~~l~gG~w~d 149 (250) T COG2966 101 HGRLDLEEAHKKLDEIQKQPLRYSRWLVLLMAG------LAAAAFALLFGGGWLD 149 (250) T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHH------HHHHHHHHHCCCCHHH T ss_conf 288779999999987650865566689999999------9999999990895388 No 40 >PRK06458 hydrogenase 4 subunit F; Validated Probab=45.72 E-value=20 Score=15.53 Aligned_cols=27 Identities=30% Similarity=0.433 Sum_probs=15.4 Q ss_pred HHHHHHHHHHHHHHHHCCCC--CCCCCHH Q ss_conf 89999999976875430100--3576088 Q gi|254780860|r 208 PMFVVFFISLLAETNRPPFD--LSEAESE 234 (348) Q Consensus 208 ~~~~~f~i~~lae~~R~PFD--~~EaEsE 234 (348) .++...+++...+..-.||. .|++++| T Consensus 215 l~~~l~l~g~~~K~a~~PfH~WlPday~~ 243 (491) T PRK06458 215 LAFVFLLIGFGTKVGLFPMHAWLPDAHSE 243 (491) T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHH T ss_conf 99999999999885625266885057560 No 41 >pfam10125 NADHdeh_related NADH dehydrogenase I, subunit N related protein. This family comprises a set of NADH dehydrogenase I, subunit N related proteins found in archaea. Their exact function, has not, as yet, been determined. Probab=45.51 E-value=20 Score=15.51 Aligned_cols=132 Identities=17% Similarity=0.296 Sum_probs=67.1 Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 98589899999986653187855235640505789999999999999999875124432101233443101367876689 Q gi|254780860|r 84 FLLAPLVSVILSLSAWAVVPVADGWIIADINVGILYILAISSLEIYGIIIGGWASNSKYAFLGALRSAAQMISYEVSIGL 163 (348) Q Consensus 84 f~~~P~i~~~~~~~~~~~iP~~~~~~~~~~~~~ll~~~~l~sl~~~~i~l~G~~S~s~ys~iG~~R~~~q~isyE~~l~l 163 (348) .++--.++++|.++..-..--+. . +| .-.+.++.+++.++++ + +-++.+.+=.+..--...+--..|+.= T Consensus 68 ~k~rrfmaivCGiAtagam~TgD---l--Fn--FtLFlaliGI~NIGIV-s--aVk~~~VLnaAf~YGliamiaslPLFG 137 (219) T pfam10125 68 LRIRRFMAIVCGLATAGAMVTGD---L--FN--FTLFLALIGISNIGIV-S--AVKNEWVLNAAFNYGLIAMIATLPLFG 137 (219) T ss_pred HHHHHHHHHHHHHHHHCCEEECC---H--HH--HHHHHHHHCCCHHHHH-H--HHHHHHHHHHHHHHHHHHHHHCCCCCC T ss_conf 99999999998886513000130---6--77--9999999761122102-1--041789998787553899986464331 Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH Q ss_conf 99999998237898999998510000221111244666999999899999999768754301003576088889875430 Q gi|254780860|r 164 VIVTVVLCAGSLNLTDIVYSQKSGLGTFLGFPPSMLDWYWLALFPMFVVFFISLLAETNRPPFDLSEAESELVAGYMVEY 243 (348) Q Consensus 164 ~i~~~~l~~gs~~~~~iv~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~lae~~R~PFD~~EaEsELv~G~~tEY 243 (348) ..-.+.--+||+|+.|....+.+ ....+...+.+.+..|++-.||-.+.|| ++.- T Consensus 138 gAaliLa~tGTLSi~EL~~~~~~------------------~l~~~k~l~~~Gv~GE~GvAPFYaaKAE-------mfRa 192 (219) T pfam10125 138 GAALILAKTGTLSIWELSKMAGD------------------VLLYAKILLAAGVIGETGVAPFYAAKAE-------MFRA 192 (219) T ss_pred HHHHHHHCCCCEEHHHHHCCCCC------------------HHHHHHHHHHHHHCCCCCCCHHHHHHHH-------HHCC T ss_conf 57877654674049988528842------------------3899999999775054675515776788-------8538 Q ss_pred CCCCHHH Q ss_conf 2320115 Q gi|254780860|r 244 SSTPYLL 250 (348) Q Consensus 244 sG~~~~l 250 (348) .|..+.+ T Consensus 193 pGaPyil 199 (219) T pfam10125 193 PGAPYIL 199 (219) T ss_pred CCCCEEE T ss_conf 9996786 No 42 >PRK12664 putative monovalent cation/H+ antiporter subunit D; Reviewed Probab=44.86 E-value=21 Score=15.45 Aligned_cols=93 Identities=15% Similarity=0.131 Sum_probs=66.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHH Q ss_conf 7899999999999999998751---2443210123344310136787668999999998237898999998510000221 Q gi|254780860|r 116 GILYILAISSLEIYGIIIGGWA---SNSKYAFLGALRSAAQMISYEVSIGLVIVTVVLCAGSLNLTDIVYSQKSGLGTFL 192 (348) Q Consensus 116 ~ll~~~~l~sl~~~~i~l~G~~---S~s~ys~iG~~R~~~q~isyE~~l~l~i~~~~l~~gs~~~~~iv~~q~~~~~~~~ 192 (348) |+==+++-++++..|.++.|.+ .++..+.-|+.=-+.-.+-|...+.++.-++...+|+-|+.+.-. T Consensus 225 DiKRlLAYSsVsQiGymv~giG~~~ig~~~a~~~ai~H~~~H~l~KalLFm~aGaV~~~TGt~~i~~LGG---------- 294 (530) T PRK12664 225 NIRRLLCYNVVGQMGLLITAIGFSYSSSVSVIGIIILQIVLSVVYQTLLFMVADSVINRTRKFNLNEVGG---------- 294 (530) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCC---------- T ss_conf 4999999999989999999986511221768999999999999999999999879999808711788558---------- Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 11124466699999989999999976875430100 Q gi|254780860|r 193 GFPPSMLDWYWLALFPMFVVFFISLLAETNRPPFD 227 (348) Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~f~i~~lae~~R~PFD 227 (348) ..-.+|.-+.++.++.++-.+-+||. T Consensus 295 ---------L~k~MP~Ta~~~lIgalSiaG~Pp~s 320 (530) T PRK12664 295 ---------LFKKMSVEAICSIIAILNMGAFPGTA 320 (530) T ss_pred ---------HHHHHHHHHHHHHHHHHHHCCCCCCC T ss_conf ---------98761199999999999984688522 No 43 >pfam11436 DUF3199 Protein of unknown function (DUF3199). Some members in this family of proteins with unknown function are annotated as YqbG however this cannot be confirmed. Currently the proteins has no known function. Probab=44.54 E-value=12 Score=16.90 Aligned_cols=37 Identities=24% Similarity=0.329 Sum_probs=27.2 Q ss_pred CCCCCCCCCHHHHHHHHHHHCCC---------CHHHHHHHHHHHHH Q ss_conf 01003576088889875430232---------01158899999999 Q gi|254780860|r 224 PPFDLSEAESELVAGYMVEYSST---------PYLLFMLAEYSTIV 260 (348) Q Consensus 224 ~PFD~~EaEsELv~G~~tEYsG~---------~~~l~~l~ey~~~~ 260 (348) .-+||.|||.|+..=.+..++.. ++|+..+|+|..+. T Consensus 25 L~~DIlEAe~~i~~i~g~~F~d~~~~plPE~vklAl~klAQy~Al~ 70 (124) T pfam11436 25 LTQDILEAEADIIQITGHDFSDEKYRPLPETVRLALLKLAQYYALK 70 (124) T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHCCCCCHHHHHHHHHHHHHHHHH T ss_conf 8989999999999875787112004779489999999999999996 No 44 >PRK08667 hydrogenase membrane subunit; Validated Probab=44.20 E-value=21 Score=15.39 Aligned_cols=105 Identities=18% Similarity=0.241 Sum_probs=50.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHH Q ss_conf 89999999999999999875124432101233443101367876689999999982378989999985100002211112 Q gi|254780860|r 117 ILYILAISSLEIYGIIIGGWASNSKYAFLGALRSAAQMISYEVSIGLVIVTVVLCAGSLNLTDIVYSQKSGLGTFLGFPP 196 (348) Q Consensus 117 ll~~~~l~sl~~~~i~l~G~~S~s~ys~iG~~R~~~q~isyE~~l~l~i~~~~l~~gs~~~~~iv~~q~~~~~~~~~~~~ 196 (348) ++...=+++++.+.++. +..+++.+.-++.+.....---...+.+.+......+||+|+........ T Consensus 136 ~~vfwE~m~l~sy~LI~--~~~~~~~~~~Aa~ky~i~~~~G~~~ll~g~~~l~~~~Gs~~~~~~~~~~~----------- 202 (644) T PRK08667 136 FLVFWEIMALSSFFLVM--NDYQEEETQRAGFFYFVMTQLSTVFLMLGIILLFIQTGSFELSPLGAPSG----------- 202 (644) T ss_pred HHHHHHHHHHHHHHHHH--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH----------- T ss_conf 99999999999999984--00998999999999999999999999999999999976188999886421----------- Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--CCCCCHH-------HHHHHHHH Q ss_conf 4466699999989999999976875430100--3576088-------88987543 Q gi|254780860|r 197 SMLDWYWLALFPMFVVFFISLLAETNRPPFD--LSEAESE-------LVAGYMVE 242 (348) Q Consensus 197 ~~~~~~~~~~~~~~~~f~i~~lae~~R~PFD--~~EaEsE-------Lv~G~~tE 242 (348) .....++..++....+..-.||. +|+|++| +.+|..+. T Consensus 203 --------~~~l~~~llliGf~~Kag~~P~H~WLP~A~~~APtpVSALlsgvmvk 249 (644) T PRK08667 203 --------SLPLVFLLLFLGFGIKAGIIPFHKWLPYAHPASPSPVSALMSGVMLK 249 (644) T ss_pred --------HHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCHHHHHHHHHHHH T ss_conf --------48999999999999988050269760666678980899999999999 No 45 >pfam01741 MscL Large-conductance mechanosensitive channel, MscL. Probab=43.73 E-value=22 Score=15.35 Aligned_cols=21 Identities=14% Similarity=0.230 Sum_probs=9.8 Q ss_pred HHHHHHHHHHHHHHHHHCCCC Q ss_conf 989999999976875430100 Q gi|254780860|r 207 FPMFVVFFISLLAETNRPPFD 227 (348) Q Consensus 207 ~~~~~~f~i~~lae~~R~PFD 227 (348) ..++++|++....+.-|..-+ T Consensus 82 Iia~vvFl~Vk~~nk~~~k~~ 102 (127) T pfam01741 82 IIAFAIFLVIKAINKLRKKEE 102 (127) T ss_pred HHHHHHHHHHHHHHHHHCCCC T ss_conf 999999999999999872367 No 46 >PRK06591 putative monovalent cation/H+ antiporter subunit D; Reviewed Probab=42.81 E-value=23 Score=15.26 Aligned_cols=104 Identities=21% Similarity=0.225 Sum_probs=66.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHH Q ss_conf 57899999999999999998751244321012334431013678766899999999823789899999851000022111 Q gi|254780860|r 115 VGILYILAISSLEIYGIIIGGWASNSKYAFLGALRSAAQMISYEVSIGLVIVTVVLCAGSLNLTDIVYSQKSGLGTFLGF 194 (348) Q Consensus 115 ~~ll~~~~l~sl~~~~i~l~G~~S~s~ys~iG~~R~~~q~isyE~~l~l~i~~~~l~~gs~~~~~iv~~q~~~~~~~~~~ 194 (348) .++..+.=+++++.|.++.. .++|-+.-++.+......--..-+.+.+..+...+||+|+.++.+...+.... T Consensus 139 f~lfVf~Ei~~i~sy~Li~~---~~~~~~~~aa~kY~i~~~~gs~~~L~gi~~ly~~tGtl~~~~i~~~~~~~~~~---- 211 (433) T PRK06591 139 FNLYVFIEISALSSYVLIAS---GNNPKSLIGAFDYLIMGSIGATLILIAIGFLLSITGSLNMTDIAAYLQEHTNS---- 211 (433) T ss_pred HHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCC---- T ss_conf 99999999999999999980---99889999999999999999999999999999997685699999987636675---- Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC--CCCCHH Q ss_conf 1244666999999899999999768754301003--576088 Q gi|254780860|r 195 PPSMLDWYWLALFPMFVVFFISLLAETNRPPFDL--SEAESE 234 (348) Q Consensus 195 ~~~~~~~~~~~~~~~~~~f~i~~lae~~R~PFD~--~EaEsE 234 (348) -....+...+++....+..-.||.. |+|.+| T Consensus 212 ---------~~~~~~~~l~~ig~~~K~a~fPlH~WLPday~~ 244 (433) T PRK06591 212 ---------RIITIAIGFFLIGAILKTAFFPMHFWMMRAYNN 244 (433) T ss_pred ---------HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC T ss_conf ---------289999999999999997264361603663478 No 47 >MTH00014 ND4 NADH dehydrogenase subunit 4; Validated Probab=40.88 E-value=24 Score=15.08 Aligned_cols=114 Identities=14% Similarity=0.216 Sum_probs=56.6 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHH Q ss_conf 78999999999999999987512443210123344310136787668999999998237898999998510000221111 Q gi|254780860|r 116 GILYILAISSLEIYGIIIGGWASNSKYAFLGALRSAAQMISYEVSIGLVIVTVVLCAGSLNLTDIVYSQKSGLGTFLGFP 195 (348) Q Consensus 116 ~ll~~~~l~sl~~~~i~l~G~~S~s~ys~iG~~R~~~q~isyE~~l~l~i~~~~l~~gs~~~~~iv~~q~~~~~~~~~~~ 195 (348) -.+++..=.+.-+...+.++|+.+.. ..-++.+-..-...-..++...+......+||.|.......+.... T Consensus 111 ~~fyif~E~~lip~~~LI~~~g~~~~-r~~A~~~~~iyt~~gsl~lL~~i~~ly~~~gs~~~~~~~~~~~~~~------- 182 (451) T MTH00014 111 LMFYIFFEASLIPTLFLILGWGYQPE-RLQAGFYLMIYTVTASLPLLMSILLIFYTNNSLNMFMSNTYTPPSI------- 182 (451) T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCH------- T ss_conf 99999999999999999996089799-9999999999999999999999999998649699999998663445------- Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CCCCCCHH-------HHHHHHHHHCC Q ss_conf 2446669999998999999997687543010--03576088-------88987543023 Q gi|254780860|r 196 PSMLDWYWLALFPMFVVFFISLLAETNRPPF--DLSEAESE-------LVAGYMVEYSS 245 (348) Q Consensus 196 ~~~~~~~~~~~~~~~~~f~i~~lae~~R~PF--D~~EaEsE-------Lv~G~~tEYsG 245 (348) .......+..+++...+..-.|| -+|+|+.| +-+|..+--++ T Consensus 183 --------~~~~~~~~~~~~aF~vK~p~~P~H~WLP~Ah~eAP~~~S~lLagvllK~G~ 233 (451) T MTH00014 183 --------YSMNLWWLITILAFMVKMPLYTVHLWLPKAHVEAPVAGSMILAGILLKLGG 233 (451) T ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCHHHHHHHHHHHHHHHH T ss_conf --------899999999999999970687201013431075977999999999999999 No 48 >PRK07691 putative monovalent cation/H+ antiporter subunit D; Reviewed Probab=39.32 E-value=26 Score=14.93 Aligned_cols=104 Identities=10% Similarity=0.085 Sum_probs=59.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHH Q ss_conf 89999999999999999875124432101233443101367876689999999982378989999985100002211112 Q gi|254780860|r 117 ILYILAISSLEIYGIIIGGWASNSKYAFLGALRSAAQMISYEVSIGLVIVTVVLCAGSLNLTDIVYSQKSGLGTFLGFPP 196 (348) Q Consensus 117 ll~~~~l~sl~~~~i~l~G~~S~s~ys~iG~~R~~~q~isyE~~l~l~i~~~~l~~gs~~~~~iv~~q~~~~~~~~~~~~ 196 (348) ++.+.-+++++.|.++.- | +++.+.-++.|......--...+.+.+....-.+||+|+.++.+.-.+..... T Consensus 134 lfvf~Ei~~i~sy~Li~~-~--~~~~~~~aa~ky~i~~~~gs~~~L~gi~~ly~~tGtl~~~~~~~~~~~~~~~~----- 205 (498) T PRK07691 134 LFVFFEVMLMASYVLLVI-G--GTKIQLRETIKYVLINVVSSSFFVVGVAILYSVVGTLNMADISVKIAELGAHQ----- 205 (498) T ss_pred HHHHHHHHHHHHHHHHHH-C--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCC----- T ss_conf 999999999999999998-4--97799999999999999999999999999999977876999999997535554----- Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--CCCCCHH Q ss_conf 4466699999989999999976875430100--3576088 Q gi|254780860|r 197 SMLDWYWLALFPMFVVFFISLLAETNRPPFD--LSEAESE 234 (348) Q Consensus 197 ~~~~~~~~~~~~~~~~f~i~~lae~~R~PFD--~~EaEsE 234 (348) .-.....+..++++...+..-.||. .|++++| T Consensus 206 ------~~~~~~~~~l~~~~f~~K~a~~PfH~WlPday~~ 239 (498) T PRK07691 206 ------TGLINVVAILFLFVFALKAGLFPLYFWLPGSYYA 239 (498) T ss_pred ------HHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCC T ss_conf ------2799999999999999985625460115444568 No 49 >PRK05846 NADH dehydrogenase subunit M; Reviewed Probab=37.62 E-value=27 Score=14.77 Aligned_cols=92 Identities=14% Similarity=0.295 Sum_probs=40.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HCCCCHHHHHHHHHHCCHHH Q ss_conf 8999999999999999987512443210123344310136787668999999998-----23789899999851000022 Q gi|254780860|r 117 ILYILAISSLEIYGIIIGGWASNSKYAFLGALRSAAQMISYEVSIGLVIVTVVLC-----AGSLNLTDIVYSQKSGLGTF 191 (348) Q Consensus 117 ll~~~~l~sl~~~~i~l~G~~S~s~ys~iG~~R~~~q~isyE~~l~l~i~~~~l~-----~gs~~~~~iv~~q~~~~~~~ 191 (348) ++...-+.+++.|.++- -|+.+ -+.-++.|.......-...+...+..+... .+|+|..++.+.+.+. T Consensus 136 ~fvf~El~~i~sy~Li~-~~~~~--~~~~Aa~ky~i~~~~gs~~~L~gi~~l~~~~~~~~~gs~~~~~l~~~~~~~---- 208 (495) T PRK05846 136 FYVFFEAMLIPMYFLIG-VWGGK--NRIYAATKFFLYTLLGSLLMLVAIIYLVVVYYNAGVGTFDIADLLNTPLPA---- 208 (495) T ss_pred HHHHHHHHHHHHHHHHH-HCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCH---- T ss_conf 99999999999999999-75977--999999999999999999999999999999963454013899998555772---- Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 111124466699999989999999976875430100 Q gi|254780860|r 192 LGFPPSMLDWYWLALFPMFVVFFISLLAETNRPPFD 227 (348) Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~f~i~~lae~~R~PFD 227 (348) -.....++.+++....+..-.||. T Consensus 209 ------------~~~~~~~~~~~~g~~~K~a~~PfH 232 (495) T PRK05846 209 ------------GVQYLLFLAFFIAFAVKMPMFPLH 232 (495) T ss_pred ------------HHHHHHHHHHHHHHHHHHHHCCCH T ss_conf ------------589999999999999986224233 No 50 >MTH00062 ND4 NADH dehydrogenase subunit 4; Provisional Probab=37.19 E-value=28 Score=14.73 Aligned_cols=67 Identities=13% Similarity=0.146 Sum_probs=42.2 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH Q ss_conf 50578999999999999999987512443210123344310136787668999999998237898999 Q gi|254780860|r 113 INVGILYILAISSLEIYGIIIGGWASNSKYAFLGALRSAAQMISYEVSIGLVIVTVVLCAGSLNLTDI 180 (348) Q Consensus 113 ~~~~ll~~~~l~sl~~~~i~l~G~~S~s~ys~iG~~R~~~q~isyE~~l~l~i~~~~l~~gs~~~~~i 180 (348) .|.-+++++.=.++-+...++.||+.+..= .-.+.--..-...-..|+.+.++......||++.... T Consensus 93 ~nll~FYifFE~sLIP~~~lI~~wG~q~eR-~~A~~y~l~YTl~~SlplL~~il~l~~~~gs~~~~~~ 159 (419) T MTH00062 93 NNSLLFWFFYELSIIPLLYLLFSESPYSER-YLASWYFLGYLLLTSLPLLLCLLYLSLVNGSFNFSEW 159 (419) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH T ss_conf 799999999999999999999880894899-9999999999999999999999999986587309977 No 51 >PRK12646 putative monovalent cation/H+ antiporter subunit A; Reviewed Probab=36.87 E-value=28 Score=14.70 Aligned_cols=94 Identities=20% Similarity=0.177 Sum_probs=61.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH Q ss_conf 578999999999999999987512443210--------------123344310136787668999999998237898999 Q gi|254780860|r 115 VGILYILAISSLEIYGIIIGGWASNSKYAF--------------LGALRSAAQMISYEVSIGLVIVTVVLCAGSLNLTDI 180 (348) Q Consensus 115 ~~ll~~~~l~sl~~~~i~l~G~~S~s~ys~--------------iG~~R~~~q~isyE~~l~l~i~~~~l~~gs~~~~~i 180 (348) .|+=-.++-++++..+.++.+.+-+++++. .|+.=-+.-..-|...+.++.-.+.-.+||-|+.+. T Consensus 296 ~DlKrlLAYSTvSqlG~i~l~iGlG~~~a~~~~~~l~~~~~~~l~aal~hl~~HalfKa~LFm~aG~I~~~tGtrdi~~L 375 (800) T PRK12646 296 WDLKGILAYSTISQLGMIMAMVGIGGGYAQHQQDAIASIYVFVLFGALFHLMNHAIFKCALFMGVGILDHEAGSRDIRIL 375 (800) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH T ss_conf 44899999999999999999997573322023210235677799999999999999999999999999997187518784 Q ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 99851000022111124466699999989999999976875430100 Q gi|254780860|r 181 VYSQKSGLGTFLGFPPSMLDWYWLALFPMFVVFFISLLAETNRPPFD 227 (348) Q Consensus 181 v~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~i~~lae~~R~PFD 227 (348) - -..-.+|.-+.++.++.++..+-+||. T Consensus 376 g-------------------GL~r~MP~ta~~~~iaalSmaGlPP~~ 403 (800) T PRK12646 376 S-------------------GMRQLFPKMNLVMTIAALSMAGVPFLN 403 (800) T ss_pred C-------------------CHHHHHHHHHHHHHHHHHHHCCCCCCC T ss_conf 8-------------------966423899999999999981785200 No 52 >KOG2232 consensus Probab=35.76 E-value=17 Score=16.07 Aligned_cols=28 Identities=32% Similarity=0.330 Sum_probs=21.9 Q ss_pred HHHHHHHHHHHCCCCCC-------------CCCHHHHHHHH Q ss_conf 99999999997278998-------------57445318889 Q gi|254780860|r 35 LMDRKVWAAVQLRRGPN-------------VVGPWGLLQSF 62 (348) Q Consensus 35 ~~eRKi~A~iQ~R~GP~-------------~vg~~GilQp~ 62 (348) ++.||+.-|+|.|+|-- +.||.|.||.. T Consensus 95 ~lkleVi~RLqarYG~lY~~~NVaiSGtHTHagPgGylqy~ 135 (734) T KOG2232 95 GLKLEVIERLQARYGNLYTEDNVAISGTHTHAGPGGYLQYV 135 (734) T ss_pred HHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCEEEEE T ss_conf 55799999998764342003644675210367886415552 No 53 >TIGR02019 BchJ bacteriochlorophyll 4-vinyl reductase; InterPro: IPR010249 This entry represents the component of bacteriochlorophyll synthetase responsible for reduction of the B-ring pendant ethylene (4-vinyl) group. It appears that this step must precede the reduction of ring D, at least by the 'dark' protochlorophyllide reductase enzymes BchN, BchB and BchL . This family appears to be present in photosynthetic bacteria except for the cyanobacterial clade. Cyanobacteria must use a non-orthologous gene to carry out this required step for the biosynthesis of both bacteriochlorophyll and chlorophyll.; GO: 0015979 photosynthesis, 0030494 bacteriochlorophyll biosynthetic process. Probab=33.99 E-value=21 Score=15.43 Aligned_cols=13 Identities=46% Similarity=0.838 Sum_probs=8.2 Q ss_pred CCCCCCCCHHHHHHHHHH Q ss_conf 789985744531888999 Q gi|254780860|r 47 RRGPNVVGPWGLLQSFAD 64 (348) Q Consensus 47 R~GP~~vg~~GilQp~~D 64 (348) |+||| .|+|.+.- T Consensus 1 RIGPN-----sIiQ~v~a 13 (189) T TIGR02019 1 RIGPN-----SIIQTVAA 13 (189) T ss_pred CCCCH-----HHHHHHHH T ss_conf 98842-----68999999 No 54 >PRK06473 NAD(P)H-quinone oxidoreductase subunit D4; Validated Probab=33.67 E-value=31 Score=14.38 Aligned_cols=109 Identities=13% Similarity=0.185 Sum_probs=52.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHH Q ss_conf 89999999999999999875124432101233443101367876689999999982378989999985100002211112 Q gi|254780860|r 117 ILYILAISSLEIYGIIIGGWASNSKYAFLGALRSAAQMISYEVSIGLVIVTVVLCAGSLNLTDIVYSQKSGLGTFLGFPP 196 (348) Q Consensus 117 ll~~~~l~sl~~~~i~l~G~~S~s~ys~iG~~R~~~q~isyE~~l~l~i~~~~l~~gs~~~~~iv~~q~~~~~~~~~~~~ 196 (348) +..+.=+++++.|.++ +-|+. +-+..++.|...-..--...+...+......+|+.|+......+.+... T Consensus 132 ~fvf~E~~~i~sy~LI-~~~g~--~~~~~aa~ky~i~~~~gs~~~L~gi~~l~~~~g~~~~~~~~~~~~~~~~------- 201 (500) T PRK06473 132 FFLFYELELIPLYLLI-AIWGG--QRRGYAATKFLLYTAISGILVLVSFLGLVWLSGASSFDYEPLLSHTLPL------- 201 (500) T ss_pred HHHHHHHHHHHHHHHH-HHCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCC------- T ss_conf 9999999999999999-94387--8889999989999975268999999999999386508899998726752------- Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--CCCCCHH-------HHHHHHHH Q ss_conf 4466699999989999999976875430100--3576088-------88987543 Q gi|254780860|r 197 SMLDWYWLALFPMFVVFFISLLAETNRPPFD--LSEAESE-------LVAGYMVE 242 (348) Q Consensus 197 ~~~~~~~~~~~~~~~~f~i~~lae~~R~PFD--~~EaEsE-------Lv~G~~tE 242 (348) -.....+..++++...+..-.||. .|+|+.| +.+|..+. T Consensus 202 -------~~~~~~~~~~l~gf~~K~~~~P~H~WLPdA~~~aPt~vSallsg~l~K 249 (500) T PRK06473 202 -------ATQLLLLAPILVGFGIKIPLVPFHTWLPDAHVEASTPVSVLLAGVLLK 249 (500) T ss_pred -------HHHHHHHHHHHHHHHHHHHHCCCHHHHCHHHHCCCCCCHHHHHHHHHH T ss_conf -------489999999999999862131215031414200898504778899998 No 55 >MTH00110 ND4 NADH dehydrogenase subunit 4; Provisional Probab=32.96 E-value=32 Score=14.31 Aligned_cols=125 Identities=14% Similarity=0.196 Sum_probs=69.4 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHH Q ss_conf 50578999999999999999987512443210123344310136787668999999998237898999998510000221 Q gi|254780860|r 113 INVGILYILAISSLEIYGIIIGGWASNSKYAFLGALRSAAQMISYEVSIGLVIVTVVLCAGSLNLTDIVYSQKSGLGTFL 192 (348) Q Consensus 113 ~~~~ll~~~~l~sl~~~~i~l~G~~S~s~ys~iG~~R~~~q~isyE~~l~l~i~~~~l~~gs~~~~~iv~~q~~~~~~~~ 192 (348) .|.-.+++..=.++-+..++.++|+.+.+= .-.+..-..-...-..|+.++++.....+||.|.......+.+.... T Consensus 113 ~dl~~FYiffE~~LIP~~~LI~~wG~~~er-~~A~~~~~~yT~~gSl~lL~~i~~l~~~~gs~~~~~~~~~~~~~~~~-- 189 (459) T MTH00110 113 TELIMFYILFEATLIPTLIIITRWGNQTER-LNAGLYFLFYTLVGSLPLLVALLYIQNNLGSLNFLLLQLWAQPLPNS-- 189 (459) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHH-- T ss_conf 489999999999999999999984995799-99999999999999999999999999975986099999887514504-- Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--CCCCCHH-------HHHHHHHHHCCCCHHHHHH Q ss_conf 11124466699999989999999976875430100--3576088-------8898754302320115889 Q gi|254780860|r 193 GFPPSMLDWYWLALFPMFVVFFISLLAETNRPPFD--LSEAESE-------LVAGYMVEYSSTPYLLFML 253 (348) Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~f~i~~lae~~R~PFD--~~EaEsE-------Lv~G~~tEYsG~~~~l~~l 253 (348) ......++.++++...+..--||. +|+||.| +-+|....-+| +++++. T Consensus 190 -----------~~~~~~~l~~~laF~vK~p~fp~H~WLP~AhveAP~~gSmiLAgvLlKlG~--YGl~R~ 246 (459) T MTH00110 190 -----------WSNNLLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILLKLGG--YGMMRI 246 (459) T ss_pred -----------HHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHH--HHHHHH T ss_conf -----------799999999999999974888886657253250975999999999999989--999999 No 56 >KOG1275 consensus Probab=31.80 E-value=20 Score=15.61 Aligned_cols=31 Identities=23% Similarity=0.313 Sum_probs=21.4 Q ss_pred HHHHHCCC-CCCCCCHHHHHHHHHHHCCCCHH Q ss_conf 87543010-03576088889875430232011 Q gi|254780860|r 219 AETNRPPF-DLSEAESELVAGYMVEYSSTPYL 249 (348) Q Consensus 219 ae~~R~PF-D~~EaEsELv~G~~tEYsG~~~~ 249 (348) ++.++.|| |---+-+|=|..|.|+|||..=| T Consensus 955 Gp~eGiPFiDDYv~T~d~VvDYLTqySGI~PG 986 (1118) T KOG1275 955 GPNEGIPFIDDYVSTDDKVVDYLTQYSGIKPG 986 (1118) T ss_pred CCCCCCCCCCCEECCHHHHHHHHHHHCCCCCC T ss_conf 77788862032331405888888874487766 No 57 >KOG2228 consensus Probab=27.13 E-value=41 Score=13.71 Aligned_cols=46 Identities=13% Similarity=0.149 Sum_probs=34.9 Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCC Q ss_conf 999999999999997278998574453188899999998630546453540 Q gi|254780860|r 31 AYVLLMDRKVWAAVQLRRGPNVVGPWGLLQSFADFLKFVFKEPIIPSKSNK 81 (348) Q Consensus 31 ~f~~~~eRKi~A~iQ~R~GP~~vg~~GilQp~~D~~KL~~Ke~i~p~~~~~ 81 (348) -....+||++.+|.-.|+=|-. =.||+-|..++..|-..+|.+..+ T Consensus 182 d~lE~LEKRVKSRFshr~I~m~-----~~~~l~~yv~l~r~ll~v~~e~~~ 227 (408) T KOG2228 182 DILELLEKRVKSRFSHRVIFML-----PSLPLGDYVDLYRKLLSVPAEFSD 227 (408) T ss_pred CHHHHHHHHHHHHCCCCEEECC-----CCCCHHHHHHHHHHHHCCCCCCCC T ss_conf 3899999998743355246226-----988858899999997357756860 No 58 >PRK00989 truB tRNA pseudouridine synthase B; Provisional Probab=26.86 E-value=17 Score=16.07 Aligned_cols=32 Identities=22% Similarity=0.195 Sum_probs=27.3 Q ss_pred HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH Q ss_conf 99999999727899857445318889999999 Q gi|254780860|r 37 DRKVWAAVQLRRGPNVVGPWGLLQSFADFLKF 68 (348) Q Consensus 37 eRKi~A~iQ~R~GP~~vg~~GilQp~~D~~KL 68 (348) ..++.++++++.|..|+|-.|-|-|+|.++=. T Consensus 22 S~~vv~~vkk~l~~kKvGH~GTLDP~AtGvLi 53 (235) T PRK00989 22 SFSLIRALTKLIGVKKIGHAGTLDPFATGVMV 53 (235) T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEE T ss_conf 89999999998587746878677974435288 No 59 >MTH00206 ND4 NADH dehydrogenase subunit 4; Provisional Probab=25.64 E-value=43 Score=13.54 Aligned_cols=105 Identities=12% Similarity=0.184 Sum_probs=56.6 Q ss_pred HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHH Q ss_conf 99999999999987512443210123344310136787668999999998237898999998510000221111244666 Q gi|254780860|r 122 AISSLEIYGIIIGGWASNSKYAFLGALRSAAQMISYEVSIGLVIVTVVLCAGSLNLTDIVYSQKSGLGTFLGFPPSMLDW 201 (348) Q Consensus 122 ~l~sl~~~~i~l~G~~S~s~ys~iG~~R~~~q~isyE~~l~l~i~~~~l~~gs~~~~~iv~~q~~~~~~~~~~~~~~~~~ 201 (348) =.++++.+ ...+.|+.+.. ..-.+..-..-...-..++...+....-.+|+.|..++.+...+.. T Consensus 122 E~~lip~~-~LI~~wg~~~~-r~~A~~~~~i~t~~gs~~lL~~i~~l~~~~gs~~~~~~~~~~~~~~------------- 186 (452) T MTH00206 122 EATLIPTL-LLITRWGAQKE-RLQAGTYFLFYTLVGSLPLLIALLKLYNSLGSLSMPIILENLSSYS------------- 186 (452) T ss_pred HHHHHHHH-HHHHHCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH------------- T ss_conf 99999999-99997099889-9999999999999999999999999998827148999998846668------------- Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCC--CCCCCHH-------HHHHHHHHHCC Q ss_conf 99999989999999976875430100--3576088-------88987543023 Q gi|254780860|r 202 YWLALFPMFVVFFISLLAETNRPPFD--LSEAESE-------LVAGYMVEYSS 245 (348) Q Consensus 202 ~~~~~~~~~~~f~i~~lae~~R~PFD--~~EaEsE-------Lv~G~~tEYsG 245 (348) ....+...+++.+.+..-.||. .|+|++| +-+|..+.-++ T Consensus 187 ----~~~~~~~~~l~f~vK~~~~pfH~WLP~Ah~eAP~~~S~iLagvllK~G~ 235 (452) T MTH00206 187 ----DNFWWLACLLAFLVKLPLYGLHLWLPKAHVEAPIAGSMVLAGVLLKLGG 235 (452) T ss_pred ----HHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCHHHHHHHHHHHHHHH T ss_conf ----9999999999999998786100106877788980999999999999999 No 60 >cd00506 PseudoU_synth_TruB_like PseudoU_synth_TruB: Pseudouridine synthase, TruB family. This group consists of eukaryotic, bacterial and archeal pseudouridine synthases similar to Escherichia coli TruB, Saccharomyces cerevisiae Pus4, M. tuberculosis TruB, S. cerevisiae Cbf5 and human dyskerin. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required. E. coli TruB, M. tuberculosis TruB and S. cerevisiae Pus4, make psi55 in the T loop of tRNAs. Pus4 catalyses the formation of psi55 in both cytoplasmic and mitochondrial tRNAs. Psi55 is almost universally conserved. S. cerevisiae Cbf5 and human dyskerin are nucleolar proteins that, with the help of guide RNAs, make the hundreds of psueudouridnes present in rRNA and small nuclear RNAs (snRNAs). Cbf5/Dyskerin is the catalytic subunit of eukaryotic box H/ACA small nucleolar ribonucleoprotein (snoRNP) particles. Mutations in human dysker Probab=25.49 E-value=17 Score=15.96 Aligned_cols=30 Identities=23% Similarity=0.181 Sum_probs=26.7 Q ss_pred HHHHHHHHHCCCCCCCCCHHHHHHHHHHHH Q ss_conf 999999997278998574453188899999 Q gi|254780860|r 37 DRKVWAAVQLRRGPNVVGPWGLLQSFADFL 66 (348) Q Consensus 37 eRKi~A~iQ~R~GP~~vg~~GilQp~~D~~ 66 (348) ...+.++++++.|..|||-.|-|-|+|.++ T Consensus 13 S~~vv~~vk~~~~~kKvGH~GTLDP~AtGv 42 (210) T cd00506 13 SHDVVDTIRRIFLAEKVGHGGTLDPFATGV 42 (210) T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCE T ss_conf 899999999985877357686669745242 No 61 >KOG1047 consensus Probab=25.46 E-value=32 Score=14.31 Aligned_cols=41 Identities=17% Similarity=0.347 Sum_probs=25.1 Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCC--HHHHHHHHHHHH-------HHHHH Q ss_conf 999999999999997278998574--453188899999-------99863 Q gi|254780860|r 31 AYVLLMDRKVWAAVQLRRGPNVVG--PWGLLQSFADFL-------KFVFK 71 (348) Q Consensus 31 ~f~~~~eRKi~A~iQ~R~GP~~vg--~~GilQp~~D~~-------KL~~K 71 (348) .|.+.+|||+.+|+|.+.=-..-. -++-+|+-.|.. ||..| T Consensus 318 GfTvylErrI~g~~~g~~~~~f~a~~gw~~L~~~~d~~g~~~~~tkLv~k 367 (613) T KOG1047 318 GFTVYLERRIVGRLYGEAYRQFEALIGWRELRPSMDLFGETSEFTKLVVK 367 (613) T ss_pred CCHHHHHHHHHHHHHCHHHHHHHHHHCHHHHHHHHHHCCCCCCCCHHHHH T ss_conf 30556656665664046688899861865525788853898532136663 No 62 >pfam08809 DUF1799 Phage related hypothetical protein (DUF1799). Members of this family are about 100 amino acids in length and are uncharacterized. Probab=24.56 E-value=46 Score=13.42 Aligned_cols=26 Identities=31% Similarity=0.438 Sum_probs=14.9 Q ss_pred HHHHCCCCCCCCCHHHH-HHHHHHHHHHH Q ss_conf 99972789985744531-88899999998 Q gi|254780860|r 42 AAVQLRRGPNVVGPWGL-LQSFADFLKFV 69 (348) Q Consensus 42 A~iQ~R~GP~~vg~~Gi-lQp~~D~~KL~ 69 (348) ..-|.|.||+ |+.|+ +..+.+.+|+. T Consensus 32 ~~TQWR~g~~--G~~GLDY~~l~~~~~~~ 58 (83) T pfam08809 32 MSTQWRVGPA--GATGLDYSVLFAVLRRY 58 (83) T ss_pred HCCCCCCCCC--CCCCCCHHHHHHHHHHC T ss_conf 7183765689--86403099999999881 No 63 >pfam05348 UMP1 Proteasome maturation factor UMP1. UMP1 is a short-lived chaperone present in the precursor form of the 20S proteasome and absent in the mature complex. UMP1 is required for the correct assembly and enzymatic activation of the proteasome. UMP1 seems to be degraded by the proteasome upon its formation Probab=24.48 E-value=41 Score=13.70 Aligned_cols=19 Identities=26% Similarity=0.268 Sum_probs=15.1 Q ss_pred HHHHHHHHHHHHHHCCCCC Q ss_conf 9999999999999727899 Q gi|254780860|r 32 YVLLMDRKVWAAVQLRRGP 50 (348) Q Consensus 32 f~~~~eRKi~A~iQ~R~GP 50 (348) .=-.+|||+..+.|++.|. T Consensus 65 lr~~ME~ki~~~~~r~P~~ 83 (130) T pfam05348 65 LKMDMEQKIASRVQRPPGL 83 (130) T ss_pred HHHHHHHHHHHHCCCCCCC T ss_conf 8889999999833679988 No 64 >PRK04099 truB tRNA pseudouridine synthase B; Provisional Probab=24.10 E-value=20 Score=15.59 Aligned_cols=30 Identities=20% Similarity=0.256 Sum_probs=26.2 Q ss_pred HHHHHHHHHCCCCCCCCCHHHHHHHHHHHH Q ss_conf 999999997278998574453188899999 Q gi|254780860|r 37 DRKVWAAVQLRRGPNVVGPWGLLQSFADFL 66 (348) Q Consensus 37 eRKi~A~iQ~R~GP~~vg~~GilQp~~D~~ 66 (348) ..++.+++.++.|-.|+|-.|-|-|+|.++ T Consensus 15 S~~vv~~vkk~l~~kKvGH~GTLDP~AtGv 44 (272) T PRK04099 15 SNAFLSRLKRKYGVKKAGFSGTLDPFAKGV 44 (272) T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCE T ss_conf 899999999984998446370569866045 No 65 >PRK13954 mscL large-conductance mechanosensitive channel; Provisional Probab=23.10 E-value=49 Score=13.25 Aligned_cols=20 Identities=20% Similarity=0.190 Sum_probs=10.0 Q ss_pred HHHHHHHHHHHHHHHHHCCC Q ss_conf 98999999997687543010 Q gi|254780860|r 207 FPMFVVFFISLLAETNRPPF 226 (348) Q Consensus 207 ~~~~~~f~i~~lae~~R~PF 226 (348) ..++.+|++.-..+.-+..- T Consensus 75 IiA~viF~~Vk~~n~~~~~~ 94 (120) T PRK13954 75 IIAFALFIFVKIANTLMKKE 94 (120) T ss_pred HHHHHHHHHHHHHHHHHHCC T ss_conf 99999999999999987245 No 66 >PRK09759 small toxic polypeptide; Provisional Probab=22.71 E-value=49 Score=13.20 Aligned_cols=25 Identities=12% Similarity=0.292 Sum_probs=20.7 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCC Q ss_conf 9999999999999999972789985 Q gi|254780860|r 28 IFIAYVLLMDRKVWAAVQLRRGPNV 52 (348) Q Consensus 28 ~~~~f~~~~eRKi~A~iQ~R~GP~~ 52 (348) ..+.++||+-|.-+--.|.|.|-+. T Consensus 15 ~TiL~fTwmvRDSLCEL~~rQg~~E 39 (50) T PRK09759 15 FTLLFFTWMIRDSLCELHIKQGSYE 39 (50) T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHH T ss_conf 9999999999977878886626645 No 67 >TIGR01770 NDH_I_N proton-translocating NADH-quinone oxidoreductase, chain N; InterPro: IPR010096 This entry describes the 14th (based on Escherichia coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This entry does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This entry also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone.; GO: 0008137 NADH dehydrogenase (ubiquinone) activity, 0042773 ATP synthesis coupled electron transport. Probab=22.68 E-value=50 Score=13.20 Aligned_cols=115 Identities=16% Similarity=0.119 Sum_probs=63.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHH Q ss_conf 89999999999999999875124432101233443101367876689999999982378989999985100002211112 Q gi|254780860|r 117 ILYILAISSLEIYGIIIGGWASNSKYAFLGALRSAAQMISYEVSIGLVIVTVVLCAGSLNLTDIVYSQKSGLGTFLGFPP 196 (348) Q Consensus 117 ll~~~~l~sl~~~~i~l~G~~S~s~ys~iG~~R~~~q~isyE~~l~l~i~~~~l~~gs~~~~~iv~~q~~~~~~~~~~~~ 196 (348) +...+++.-.+-..=+++|..-+|++|.-||.--.....---.-+..-.-.+.-.+||+|..++.+.+.+...+...... T Consensus 130 l~~y~gLEl~SL~~Y~L~~~~r~s~~S~EAglKYfiLGa~sS~llLfG~sliYg~tG~~~~~~~~~~~~~~~~~~~~i~~ 209 (491) T TIGR01770 130 LSIYLGLELQSLCFYVLAALKRKSEFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLFLSNLEKNISNILI 209 (491) T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH T ss_conf 99999999999999999863211121235668999999999999999999999867677799999985211023430310 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----CCCCCCHHHH Q ss_conf 446669999998999999997687543010-----0357608888 Q gi|254780860|r 197 SMLDWYWLALFPMFVVFFISLLAETNRPPF-----DLSEAESELV 236 (348) Q Consensus 197 ~~~~~~~~~~~~~~~~f~i~~lae~~R~PF-----D~~EaEsELv 236 (348) . .-....+.+...++..=+..-.|| |.=||=.--| T Consensus 210 ~-----~~~l~~G~~f~~~gl~FKl~avPFH~W~PDVYeGaP~~v 249 (491) T TIGR01770 210 N-----SSLLLLGIVFILVGLLFKLSAVPFHMWVPDVYEGAPTSV 249 (491) T ss_pred C-----HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHH T ss_conf 4-----889999999999999999986133343786413654999 No 68 >PRK13419 F0F1 ATP synthase subunit A; Provisional Probab=22.65 E-value=50 Score=13.19 Aligned_cols=72 Identities=22% Similarity=0.277 Sum_probs=45.1 Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH-HHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC Q ss_conf 9999999999999727899857445318889999999-863054645354038985898999999866531878552 Q gi|254780860|r 32 YVLLMDRKVWAAVQLRRGPNVVGPWGLLQSFADFLKF-VFKEPIIPSKSNKILFLLAPLVSVILSLSAWAVVPVADG 107 (348) Q Consensus 32 f~~~~eRKi~A~iQ~R~GP~~vg~~GilQp~~D~~KL-~~Ke~i~p~~~~~~~f~~~P~i~~~~~~~~~~~iP~~~~ 107 (348) .+...-||...+ +.+.-|. |..+.+.++.|.++- ..|+++= ++.++++-.+.-++.++...=.+-.+|++.+ T Consensus 116 ~f~~~~r~ykk~-~~~~~P~--G~~n~~E~lV~FVRddIa~~nIG-~~~~ky~PfL~TlFfFIL~~NLlGLIP~~~t 188 (335) T PRK13419 116 VFLAAGRKYKKM-TKSQAPK--GLANAMEALVEFIRLDVAKSNIG-HGYEKFLPYLLTVFFFILVCNLLGLVPYGAT 188 (335) T ss_pred HHHHHHHHHHHC-CCCCCCH--HHHHHHHHHHHHHHHHHHHHCCC-CCCCEECHHHHHHHHHHHHHHHHHHCCCCCC T ss_conf 999999998614-8455983--88888999999998645784048-6663531799999999999999773587878 No 69 >CHL00011 ndhD NADH dehydrogenase subunit 4 Probab=22.23 E-value=51 Score=13.14 Aligned_cols=35 Identities=23% Similarity=0.526 Sum_probs=19.3 Q ss_pred HHHHHHHHHHHHHHHHCCCC--CCCCCHH-------HHHHHHHH Q ss_conf 89999999976875430100--3576088-------88987543 Q gi|254780860|r 208 PMFVVFFISLLAETNRPPFD--LSEAESE-------LVAGYMVE 242 (348) Q Consensus 208 ~~~~~f~i~~lae~~R~PFD--~~EaEsE-------Lv~G~~tE 242 (348) ..++.++++...+..-.||. .|++++| +-+|..+. T Consensus 212 ~~~~~~ligf~vK~~~fP~H~WlPda~~~ap~~~s~llsg~~~k 255 (500) T CHL00011 212 LFYIGFLIAFAVKLPIIPLHTWLPDTHGEAHYSTCMLLAGILLK 255 (500) T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH T ss_conf 99999999999852845460116777778983999999999999 No 70 >PTZ00227 variable surface protein Vir14; Provisional Probab=22.18 E-value=47 Score=13.31 Aligned_cols=20 Identities=10% Similarity=-0.074 Sum_probs=7.3 Q ss_pred HHHHHHHHHCCCCHHHHHHH Q ss_conf 88987543023201158899 Q gi|254780860|r 235 LVAGYMVEYSSTPYLLFMLA 254 (348) Q Consensus 235 Lv~G~~tEYsG~~~~l~~l~ 254 (348) ..+-..-|=+|..+....++ T Consensus 275 kMEkl~~~np~~nLl~~~~g 294 (418) T PTZ00227 275 KMEKLEKLNPGGNLLLTDMG 294 (418) T ss_pred HHHHHHHHCCCCCEEECCCC T ss_conf 99998750887772323234 No 71 >PRK12645 monovalent cation/H+ antiporter subunit A; Reviewed Probab=21.89 E-value=51 Score=13.10 Aligned_cols=92 Identities=11% Similarity=0.214 Sum_probs=48.3 Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHH Q ss_conf 99999999999998751244321012334431013678766899999999823789899999851000022111124466 Q gi|254780860|r 121 LAISSLEIYGIIIGGWASNSKYAFLGALRSAAQMISYEVSIGLVIVTVVLCAGSLNLTDIVYSQKSGLGTFLGFPPSMLD 200 (348) Q Consensus 121 ~~l~sl~~~~i~l~G~~S~s~ys~iG~~R~~~q~isyE~~l~l~i~~~~l~~gs~~~~~iv~~q~~~~~~~~~~~~~~~~ 200 (348) .=+++++.|. +.|+..+.+-+.-++.|.......-...+...+......+||+|+.++.+........ . T Consensus 139 wElt~l~Sy~--LI~~~~~~~~~~~aA~k~ll~t~~G~l~lL~gi~ll~~~tGt~~~~~l~~~~~~~~~~------~--- 207 (800) T PRK12645 139 WELTSISSFL--LISYWYEREASRYGAQKSMLITVFGGLSMLGGFILLYIMTGSFSIREMIQHADEIQNS------P--- 207 (800) T ss_pred HHHHHHHHHH--HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCC------C--- T ss_conf 9999999999--9830599889999999998777777899999999999997894199999732101357------0--- Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 699999989999999976875430100 Q gi|254780860|r 201 WYWLALFPMFVVFFISLLAETNRPPFD 227 (348) Q Consensus 201 ~~~~~~~~~~~~f~i~~lae~~R~PFD 227 (348) ....+.+..++....++...||. T Consensus 208 ----l~~~a~~LiliGa~~KsA~fPfH 230 (800) T PRK12645 208 ----LFIPAMILILLGAFTKSAQFPFY 230 (800) T ss_pred ----HHHHHHHHHHHHHHHHHCCCCCH T ss_conf ----99999999999999983626661 No 72 >PRK08168 NADH dehydrogenase subunit L; Provisional Probab=21.60 E-value=52 Score=13.06 Aligned_cols=90 Identities=20% Similarity=0.153 Sum_probs=60.5 Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99875124432101233443101367876689999999982378989999985100002211112446669999998999 Q gi|254780860|r 132 IIGGWASNSKYAFLGALRSAAQMISYEVSIGLVIVTVVLCAGSLNLTDIVYSQKSGLGTFLGFPPSMLDWYWLALFPMFV 211 (348) Q Consensus 132 ~l~G~~S~s~ys~iG~~R~~~q~isyE~~l~l~i~~~~l~~gs~~~~~iv~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (348) .+.|+-.+.|-+.-.+.|.....---+..+...+......+||.++.++.+........ .....+.. T Consensus 137 ~LI~f~~er~~A~~AA~Kafl~~riGd~~LL~a~~ll~~~~GT~~i~~i~~~~~~~~~~-------------~~l~~a~l 203 (514) T PRK08168 137 RLLTFYPDRPRARLAAHKKFIASRLAELLLLAAAGLLYLEVGSLSLADILQQVAADGLS-------------LSLQAAAL 203 (514) T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCC-------------HHHHHHHH T ss_conf 99832499888999999999999999999999999999996987399999987445676-------------58999999 Q ss_pred HHHHHHHHHHHHCCC-----CCCCCCHH Q ss_conf 999997687543010-----03576088 Q gi|254780860|r 212 VFFISLLAETNRPPF-----DLSEAESE 234 (348) Q Consensus 212 ~f~i~~lae~~R~PF-----D~~EaEsE 234 (348) +..++...++...|| |-.||.+- T Consensus 204 LL~laA~~KSAQfPfH~WLp~AMeaPTP 231 (514) T PRK08168 204 LLALAALLKTAQLPLHGWLIQVMEAPTP 231 (514) T ss_pred HHHHHHHHHHHHCCCCHHHHHHHCCCCC T ss_conf 9999999885117373317988658980 No 73 >PRK12667 putative monovalent cation/H+ antiporter subunit D; Reviewed Probab=21.52 E-value=52 Score=13.05 Aligned_cols=112 Identities=16% Similarity=0.101 Sum_probs=58.4 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHH Q ss_conf 99999999999999998751244321012334431013678766899999999823789899999851000022111124 Q gi|254780860|r 118 LYILAISSLEIYGIIIGGWASNSKYAFLGALRSAAQMISYEVSIGLVIVTVVLCAGSLNLTDIVYSQKSGLGTFLGFPPS 197 (348) Q Consensus 118 l~~~~l~sl~~~~i~l~G~~S~s~ys~iG~~R~~~q~isyE~~l~l~i~~~~l~~gs~~~~~iv~~q~~~~~~~~~~~~~ 197 (348) +...=+.+++.|.++ |+..+++-+.-++.+......--...+...+....-.+||.|+.++.+...+........... T Consensus 139 fvf~El~~i~sy~Li--~~~~~~~~~~~Aa~ky~i~~~~gs~~~L~gi~~ly~~~Gs~~~~~l~~~~~~~~~~~~~~~~~ 216 (517) T PRK12667 139 FVMLEVLSISAYGLV--AYYRDRGDAVEAAIKYALIGAVGTTMYFLALVILYGTYGTLNMADLSLKIHGLSGAGETTGVG 216 (517) T ss_pred HHHHHHHHHHHHHHH--HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHC T ss_conf 999999999999999--882998999999999999999999999999999999977851999999975303456666420 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--CCCCCHH Q ss_conf 466699999989999999976875430100--3576088 Q gi|254780860|r 198 MLDWYWLALFPMFVVFFISLLAETNRPPFD--LSEAESE 234 (348) Q Consensus 198 ~~~~~~~~~~~~~~~f~i~~lae~~R~PFD--~~EaEsE 234 (348) . .......+...++++...+..-.||. .|++++| T Consensus 217 ~---~~~~~~~~~~l~ligf~~K~~l~PfH~WLPday~~ 252 (517) T PRK12667 217 N---VPWASGLALALALWAFTIKAAIFPNHFWLPDAHPA 252 (517) T ss_pred C---HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCC T ss_conf 0---68999999999999999985606324665256323 No 74 >PRK02546 NAD(P)H-quinone oxidoreductase subunit 4; Provisional Probab=21.33 E-value=53 Score=13.03 Aligned_cols=108 Identities=13% Similarity=0.157 Sum_probs=47.7 Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHH Q ss_conf 99999999999998751244321012334431013678766899999999823789899999851000022111124466 Q gi|254780860|r 121 LAISSLEIYGIIIGGWASNSKYAFLGALRSAAQMISYEVSIGLVIVTVVLCAGSLNLTDIVYSQKSGLGTFLGFPPSMLD 200 (348) Q Consensus 121 ~~l~sl~~~~i~l~G~~S~s~ys~iG~~R~~~q~isyE~~l~l~i~~~~l~~gs~~~~~iv~~q~~~~~~~~~~~~~~~~ 200 (348) .-+++++.|.++ +-|++.+ +...+.|-..-...-...+...++......|+.+.......+++... T Consensus 147 ~E~~~i~sy~LI-g~~g~~~--~~~Aa~k~~l~t~~gs~~lL~~~~~l~~~~g~~~f~~~~l~~~~~~~----------- 212 (531) T PRK02546 147 WELELIPVYLLL-AIWGGKK--RQYAATKFILYTAGSSLFILLAALAMAFYGDTPSFDMTHLAAKDFGL----------- 212 (531) T ss_pred HHHHHHHHHHHH-HHCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCH----------- T ss_conf 999999999999-9809899--99999999999977799999999999998487379999998543562----------- Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCC--CCCCCHH-------HHHHHHHHHCC Q ss_conf 699999989999999976875430100--3576088-------88987543023 Q gi|254780860|r 201 WYWLALFPMFVVFFISLLAETNRPPFD--LSEAESE-------LVAGYMVEYSS 245 (348) Q Consensus 201 ~~~~~~~~~~~~f~i~~lae~~R~PFD--~~EaEsE-------Lv~G~~tEYsG 245 (348) -.....+..++++...+..-.||. +|+|++| +-+|..+.-++ T Consensus 213 ---~~~~~~~~~~li~f~vK~~~fP~H~WLPdA~~~aPt~~S~llagvl~K~G~ 263 (531) T PRK02546 213 ---GFQLLCYAGLLIAYGVKLPIVPLHTWLPDAHGEATAPVHMLLAGILLKMGG 263 (531) T ss_pred ---HHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHH T ss_conf ---799999999999999850103451266888778990678888899998744 No 75 >TIGR00109 hemH ferrochelatase; InterPro: IPR001015 Synonym(s): Protoheme ferro-lyase, Iron chelatase, etc. Ferrochelatase catalyzes the last step in heme biosynthesis: the chelation of a ferrous ion to proto-porphyrin IX, to form protoheme , . In eukaryotic cells, it binds to the mitochondrial inner membrane with its active site on the matrix side of the membrane. The X-ray structure of Bacillus subtilis and human ferrochelatase have been solved , . The human enzyme exists as a homodimer. Each subunit contains one [Fe2S2] cluster. The monomer is folded into two similar domains, each with a four-stranded parallel beta-sheet flanked by an alpha-helix in a beta-alpha-beta motif that is reminiscent of the fold found in the periplasmic binding proteins. The topological similarity between the domains suggests that they have arisen from a gene duplication event. However, significant differences exist between the two domains, including an N-terminal section (residues 80-130) that forms part of the active site pocket, and a C-terminal extension (residues 390-423) that is involved in coordination of the [Fe2S2]cluster and in stabilisation of the homodimer. The [Fe2S2] cluster ligands are Cys196, Cys403, Cys406 and Cys411. The experiments with Co(II) binding show that His230 and Asp383 are part of the enzyme active site . Ferrochelatase seems to have a structurally conserved core region that is common to the enzyme from bacteria, plants and mammals. Porphyrin binds in the identified cleft; this cleft also includes the metal-binding site of the enzyme. It is likely that the structure of the cleft region will have different conformations upon substrate binding and release .; GO: 0004325 ferrochelatase activity, 0006783 heme biosynthetic process. Probab=20.78 E-value=30 Score=14.52 Aligned_cols=25 Identities=24% Similarity=0.373 Sum_probs=15.6 Q ss_pred HHC-CCCCCCCCHHHHHHHHHH-HHHHHHHCC Q ss_conf 972-789985744531888999-999986305 Q gi|254780860|r 44 VQL-RRGPNVVGPWGLLQSFAD-FLKFVFKEP 73 (348) Q Consensus 44 iQ~-R~GP~~vg~~GilQp~~D-~~KL~~Ke~ 73 (348) -|+ |.||.. +|+|..| ++|-+.++. T Consensus 250 ~QSe~~GP~~-----WL~P~T~e~~~~l~~~~ 276 (339) T TIGR00109 250 YQSERVGPEP-----WLGPYTEELLEKLGEKG 276 (339) T ss_pred EECCCCCCCC-----CCCCCHHHHHHHHHHHC T ss_conf 6216768865-----66632799999986506 No 76 >PRK08676 hydrogenase membrane subunit; Validated Probab=20.47 E-value=55 Score=12.92 Aligned_cols=85 Identities=19% Similarity=0.156 Sum_probs=39.1 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHH Q ss_conf 99999999999999875124432101233443101367---876689999999982378989999985100002211112 Q gi|254780860|r 120 ILAISSLEIYGIIIGGWASNSKYAFLGALRSAAQMISY---EVSIGLVIVTVVLCAGSLNLTDIVYSQKSGLGTFLGFPP 196 (348) Q Consensus 120 ~~~l~sl~~~~i~l~G~~S~s~ys~iG~~R~~~q~isy---E~~l~l~i~~~~l~~gs~~~~~iv~~q~~~~~~~~~~~~ 196 (348) .++-+|++..+.++.|.+.+++.+.-|+. .+++++ -..+.++.-.+.-.+||-++.+.-. T Consensus 299 lLAYSSIshmG~i~lg~~~gt~~~~~gal---~~~i~H~l~k~~LFl~aG~i~~~~gt~~i~~l~G-------------- 361 (486) T PRK08676 299 LIAFSSIEHMGLMLLGIGIGTPLALFWAL---FHMLAHSLVKAGLFFSAGILHRQYRSDRFDRIFD-------------- 361 (486) T ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCC-------------- T ss_conf 99997999999999999967399999999---9999999999999999999999749976998659-------------- Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 446669999998999999997687543010 Q gi|254780860|r 197 SMLDWYWLALFPMFVVFFISLLAETNRPPF 226 (348) Q Consensus 197 ~~~~~~~~~~~~~~~~f~i~~lae~~R~PF 226 (348) ..-.+|.....+.++.++-.+-+|| T Consensus 362 -----L~~~mP~~a~~~~i~~lsl~GlPP~ 386 (486) T PRK08676 362 -----VFRLQPVAAWGVILGSAAIIGMPPF 386 (486) T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf -----8866389999999999999877675 No 77 >PRK01528 truB tRNA pseudouridine synthase B; Provisional Probab=20.46 E-value=26 Score=14.92 Aligned_cols=30 Identities=23% Similarity=0.179 Sum_probs=26.7 Q ss_pred HHHHHHHHHCCCCCCCCCHHHHHHHHHHHH Q ss_conf 999999997278998574453188899999 Q gi|254780860|r 37 DRKVWAAVQLRRGPNVVGPWGLLQSFADFL 66 (348) Q Consensus 37 eRKi~A~iQ~R~GP~~vg~~GilQp~~D~~ 66 (348) ..++.+++.++.|-.|+|-.|-|-|+|.++ T Consensus 16 S~~vv~~vkk~~~~~KvGH~GTLDP~AtGv 45 (293) T PRK01528 16 SAKLVSIVKKILGKVKIGHAGTLDVEAEGI 45 (293) T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCE T ss_conf 899999999984898057686788757015 No 78 >PRK06041 flagellar assembly protein J; Reviewed Probab=20.36 E-value=55 Score=12.90 Aligned_cols=113 Identities=20% Similarity=0.204 Sum_probs=51.5 Q ss_pred HHHCCCCCCCCCHHHH-HHHHHHHCCCCHHHHHHHH-HHHHHHHHHHHHHHHCCCC-CCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 5430100357608888-9875430232011588999-9999999999997323655-43122366665689999999999 Q gi|254780860|r 221 TNRPPFDLSEAESELV-AGYMVEYSSTPYLLFMLAE-YSTIVLMCTLASILFLGGW-LPPFDISLFKSIPGFFWLVFKTL 297 (348) Q Consensus 221 ~~R~PFD~~EaEsELv-~G~~tEYsG~~~~l~~l~e-y~~~~~~s~l~~~lFlGg~-~~p~~~~~~~~l~~~~~~~~k~~ 297 (348) .+..==|+-+.|+|.+ +-+.+||-+....+=.+.| |..+.+...++.+...=.. ..+..+..... ...+.-.. T Consensus 157 SG~~~~eFL~~Eq~~~~~~y~~~ye~~LesLd~~~e~YvSll~S~~f~~v~~~I~~il~~~~~~~~l~----~~~~~~~~ 232 (547) T PRK06041 157 SGEPLKEFLKQEQDTVMEIYKTFYERALESLDKWKDAYVSLLLSVTFVATFIIISPILYGIDITTTLS----LSLLLILF 232 (547) T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH----HHHHHHHH T ss_conf 69987999999999999999999999999999999999999999999999999999991888899999----99999999 Q ss_pred HHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999741012----------5499998854278999999999999 Q gi|254780860|r 298 GLFFMVAMVKAFVPR----------YRYDQLMRLGWKVFLPLSFAMVLIV 337 (348) Q Consensus 298 ~~~~~~i~ir~~~pR----------~R~Dq~~~~~Wk~llpl~l~~~~~~ 337 (348) +-......++...|+ =+.|.-++-..+..+|++.+..++. T Consensus 233 i~~~~v~~i~~~~P~Dp~~~~~~~~t~~~~~i~~~~~i~i~~~~i~~~~l 282 (547) T PRK06041 233 IEVGGVYVIYKAVPKDPKWHTLEIKSKEQTKIRKLLIISVPLSVILVLLL 282 (547) T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999983289983011356798789999999999999999999999 Done!