RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780860|ref|YP_003065273.1| NADH dehydrogenase subunit H
[Candidatus Liberibacter asiaticus str. psy62]
         (348 letters)



>gnl|CDD|109212 pfam00146, NADHdh, NADH dehydrogenase. 
          Length = 309

 Score =  355 bits (914), Expect = 9e-99
 Identities = 168/328 (51%), Positives = 225/328 (68%), Gaps = 20/328 (6%)

Query: 14  FMAIKSIVFLVGLLIFIAYVLLMDRKVWAAVQLRRGPNVVGPWGLLQSFADFLKFVFKEP 73
            + +  ++ ++ +L+ +A++ L++RKV   +Q R+GPNVVGP GLLQ FAD LK   KEP
Sbjct: 1   LILLNILLLIIPVLLSVAFLTLLERKVLGYMQQRKGPNVVGPLGLLQPFADGLKLFIKEP 60

Query: 74  IIPSKSNKILFLLAPLVSVILSLSAWAVVPVADGWIIADINVGILYILAISSLEIYGIII 133
           ++PS S+  LF LAP++++ L+L AW V+P   G +  D N+G+L+ LA+SSL +YG+++
Sbjct: 61  VVPSTSSPFLFTLAPVLALTLALLAWVVLPFPYGLV--DFNLGVLFFLALSSLAVYGVLM 118

Query: 134 GGWASNSKYAFLGALRSAAQMISYEVSIGLVIVTVVLCAGSLNLTDIVYSQKSGLGTFLG 193
            GWASNSKYA LGALR+ AQ ISYEVS+GL+++++++ +GS NL+DIV +Q         
Sbjct: 119 SGWASNSKYALLGALRAVAQTISYEVSLGLILLSIIILSGSFNLSDIVNAQ--------- 169

Query: 194 FPPSMLDWYWLALFPMFVVFFISLLAETNRPPFDLSEAESELVAGYMVEYSSTPYLLFML 253
                L W  L  FP+F++FFIS LAETNR PFDL E ESELVAGY VEYS  P+ LF L
Sbjct: 170 ----ELGWNILPQFPLFLMFFISTLAETNRAPFDLPEGESELVAGYNVEYSGGPFALFFL 225

Query: 254 AEYSTIVLMCTLASILFLGGWLPPFDISLFKSIPGFFWLVFKTLGLFFMVAMVKAFVPRY 313
           AEY+ I+LM  L S+LFLGGWLP           G  W V KT  LFF+   V+A  PR+
Sbjct: 226 AEYANIILMSLLTSVLFLGGWLPILPP-----ELGIIWFVLKTYLLFFLFIWVRASYPRF 280

Query: 314 RYDQLMRLGWKVFLPLSFAMVLIVSFFL 341
           RYDQLM LGWK FLPLS A +L  +  L
Sbjct: 281 RYDQLMYLGWKNFLPLSLANLLFTASLL 308


>gnl|CDD|31209 COG1005, NuoH, NADH:ubiquinone oxidoreductase subunit 1 (chain H)
           [Energy production and conversion].
          Length = 332

 Score =  332 bits (854), Expect = 6e-92
 Identities = 175/341 (51%), Positives = 229/341 (67%), Gaps = 13/341 (3%)

Query: 3   SFIEDFFVPLFFMAIKSIVFLVGLLIFIAYVLLMDRKVWAAVQLRRGPNVVGPWGLLQSF 62
               D  +PL F  +K +V L+GLL+  A+++  +RK+ A VQLR GPN VGP+GLLQ  
Sbjct: 2   ELFSDMDIPLLFTILKIVVILIGLLVAGAFLVWFERKLAARVQLRYGPNRVGPFGLLQLL 61

Query: 63  ADFLKFVFKEPIIPSKSNKILFLLAPLVSVILSLSAWAVVPVADGWIIADINVGILYILA 122
           AD +K  FKE IIP  ++K LF LAP++++I +  A+AV+P    W++A++NVG+L+ILA
Sbjct: 62  ADAIKLFFKEDIIPRGADKFLFTLAPIIALIPAFLAFAVIPFGPEWVVANLNVGLLFILA 121

Query: 123 ISSLEIYGIIIGGWASNSKYAFLGALRSAAQMISYEVSIGLVIVTVVLCAGSLNLTDIVY 182
           ISSL +YGII+ GWASN+KYA LGALR+AAQMISYEV +GL ++ VV+ AGSLNL DIV 
Sbjct: 122 ISSLGVYGIILAGWASNNKYALLGALRAAAQMISYEVPLGLSVLAVVMLAGSLNLVDIVN 181

Query: 183 SQKSGLGTFLGFPPSMLDWYWLALFPMFVVFFISLLAETNRPPFDLSEAESELVAGYMVE 242
           +Q                W  L     F+VF I++LAETNR PFDL EAESELVAGY  E
Sbjct: 182 AQSGL------------LWNILLQPIAFIVFLIAMLAETNRFPFDLPEAESELVAGYSTE 229

Query: 243 YSSTPYLLFMLAEYSTIVLMCTLASILFLGGWLPPFDISLFKSIPGFFWLVFKTLGLFFM 302
           YS   + LF L EY  I+L   L ++LFLGGWL PF    +   P F W V KT  LFF 
Sbjct: 230 YSGIKFGLFFLGEYINIILFSALVALLFLGGWLGPFPPPGWVPGP-FVWFVLKTAFLFFF 288

Query: 303 VAMVKAFVPRYRYDQLMRLGWKVFLPLSFAMVLIVSFFLKI 343
              ++A +PRYRYDQLMRLGWK+ LPL+   +++ +  L +
Sbjct: 289 FLWLRATLPRYRYDQLMRLGWKILLPLTLVNLVLTAALLLL 329


>gnl|CDD|177127 MTH00054, ND1, NADH dehydrogenase subunit 1; Provisional.
          Length = 324

 Score =  317 bits (813), Expect = 4e-87
 Identities = 168/325 (51%), Positives = 225/325 (69%), Gaps = 15/325 (4%)

Query: 17  IKSIVFLVGLLIFIAYVLLMDRKVWAAVQLRRGPNVVGPWGLLQSFADFLKFVFKEPIIP 76
           IK +  LV LLI IAY+ L +RKV   +Q R+GPNVVG +GLLQ  AD LK   KE IIP
Sbjct: 6   IKILAILVPLLISIAYLTLAERKVLGYIQCRKGPNVVGVYGLLQPLADGLKLFTKEIIIP 65

Query: 77  SKSNKILFLLAPLVSVILSLSAWAVVPVADGWIIADINVGILYILAISSLEIYGIIIGGW 136
           + +N  ++++AP++S+ L+  AW V+P  +G +++D+ +GILY+ A+SS+ +Y +++ GW
Sbjct: 66  NHANIFIYIMAPILSLTLAFIAWGVIPYGEGVVLSDLGIGILYLFAVSSISVYAVLMSGW 125

Query: 137 ASNSKYAFLGALRSAAQMISYEVSIGLVIVTVVLCAGSLNLTDIVYSQKSGLGTFLGFPP 196
           +SNSKYAFLGA+R+AAQMISYEVSIGL+I++VVLC GSLNLT+IV +QK+          
Sbjct: 126 SSNSKYAFLGAIRAAAQMISYEVSIGLIIISVVLCVGSLNLTEIVLAQKN---------- 175

Query: 197 SMLDWYWLALFPMFVVFFISLLAETNRPPFDLSEAESELVAGYMVEYSSTPYLLFMLAEY 256
               W+   LFP  ++FF+S LAETNR PFDL+E ESELV+G+ VEYSS  + LF LAEY
Sbjct: 176 ---IWFIFPLFPAAIMFFVSALAETNRVPFDLTEGESELVSGFNVEYSSMSFALFFLAEY 232

Query: 257 STIVLMCTLASILFLGGWLPPFDISLFKSIPGFFWLVFKTLGLFFMVAMVKAFVPRYRYD 316
             I+LM T   ILFLGGWL     + + S   F W   K   + F+   ++A  PR RYD
Sbjct: 233 CHIILMSTFGVILFLGGWLVISGPTSYFS--NFVWFGIKIALIIFLFIWIRASYPRIRYD 290

Query: 317 QLMRLGWKVFLPLSFAMVLIVSFFL 341
           QLM L WK +LPLS A V++VS  L
Sbjct: 291 QLMALLWKSYLPLSLAFVVLVSGIL 315


>gnl|CDD|164761 MTH00216, ND1, NADH dehydrogenase subunit 1; Provisional.
          Length = 327

 Score =  314 bits (806), Expect = 3e-86
 Identities = 171/333 (51%), Positives = 231/333 (69%), Gaps = 16/333 (4%)

Query: 9   FVPLFFMAIKSIVFLVGLLIFIAYVLLMDRKVWAAVQLRRGPNVVGPWGLLQSFADFLKF 68
            V + F  IK ++ +V LLI +AY+ L +RKV   +Q R+GPNVVG +GLLQ FAD +K 
Sbjct: 2   MVFIIFYLIKILIIIVPLLIAVAYLTLAERKVLGYMQARKGPNVVGVYGLLQPFADGVKL 61

Query: 69  VFKEPIIPSKSNKILFLLAPLVSVILSLSAWAVVPVADGWIIADINVGILYILAISSLEI 128
             KE +IP  +N  ++++AP++S  L+L  W V+P   G +I+D  +GILYILAISS+ +
Sbjct: 62  FTKEMVIPHHANLFVYIVAPVLSFTLALIVWGVIPYERGVLISDFKIGILYILAISSISV 121

Query: 129 YGIIIGGWASNSKYAFLGALRSAAQMISYEVSIGLVIVTVVLCAGSLNLTDIVYSQKSGL 188
           Y I++ GW SNSKYAFLGA+R+AAQMISYEVSIGL+I++V+LC GSL++T+IV +Q +G+
Sbjct: 122 YAILMSGWGSNSKYAFLGAIRAAAQMISYEVSIGLIIISVLLCVGSLSITEIVLAQNNGI 181

Query: 189 GTFLGFPPSMLDWYWLALFPMFVVFFISLLAETNRPPFDLSEAESELVAGYMVEYSSTPY 248
                       W++  LFP+ ++FF S LAETNR PFDL+E ESELV+GY VEY+S  +
Sbjct: 182 ------------WFFFPLFPVAIMFFASALAETNRAPFDLTEGESELVSGYNVEYASMSF 229

Query: 249 LLFMLAEYSTIVLMCTLASILFLGGWLPPFDISLFKSIPGFFWLVFKTLGLFFMVAMVKA 308
            LF LAEY+ I+LM  L +ILFLGGWL P  I  FK   G  W   K + + F+   V+A
Sbjct: 230 ALFFLAEYAHIILMSCLTTILFLGGWLSP--IKYFKG--GAGWFGLKVVFIIFLFIWVRA 285

Query: 309 FVPRYRYDQLMRLGWKVFLPLSFAMVLIVSFFL 341
             PR RYDQLM L WK +LPLS  +V+ V+  L
Sbjct: 286 SFPRIRYDQLMALLWKSYLPLSLGVVIFVASVL 318


>gnl|CDD|177173 MTH00111, ND1, NADH dehydrogenase subunit 1; Provisional.
          Length = 323

 Score =  277 bits (710), Expect = 4e-75
 Identities = 144/327 (44%), Positives = 213/327 (65%), Gaps = 24/327 (7%)

Query: 11  PLFFMAIKSIVFLVGLLIFIAYVLLMDRKVWAAVQLRRGPNVVGPWGLLQSFADFLKFVF 70
            L    I  +++++ +LI +A++ L++RK+   +QLR+GPN+VGP+GLLQ  AD +K   
Sbjct: 3   TLLLNLINPLLYIIPILIAVAFLTLLERKILGYMQLRKGPNIVGPFGLLQPIADGVKLFI 62

Query: 71  KEPIIPSKSNKILFLLAPLVSVILSLSAWAVVPVADGWIIADINVGILYILAISSLEIYG 130
           KEPI PS S+ ILF L P+++++L+L+ W  +P+     +AD+N+G+L++LA+SS+ +Y 
Sbjct: 63  KEPIRPSTSSPILFTLTPILALLLALTIWTPLPMPFP--LADLNLGLLFLLAMSSMAVYS 120

Query: 131 IIIGGWASNSKYAFLGALRSAAQMISYEVSIGLVIVTVVLCAGSLNLTDIVYSQKSGLGT 190
           I+  GWASNSKYA +GALR+ AQ ISYEV++G+++++++L +G   L  +  +Q+     
Sbjct: 121 ILWSGWASNSKYALMGALRAVAQTISYEVTLGIILLSLILLSGGYTLQTLATTQEP---L 177

Query: 191 FLGFP--PSMLDWYWLALFPMFVVFFISLLAETNRPPFDLSEAESELVAGYMVEYSSTPY 248
           +L F   P  + WY            IS LAETNR PFDL+E ESELV+G+ VEY++ P+
Sbjct: 178 WLIFSSWPLAMMWY------------ISTLAETNRAPFDLTEGESELVSGFNVEYAAGPF 225

Query: 249 LLFMLAEYSTIVLMCTLASILFLGGWLPPFDISLFKSIPGFFWLVFKTLGLFFMVAMVKA 308
            LF LAEY+ I+LM TL +ILFL          LF        L+ KTL L      ++A
Sbjct: 226 ALFFLAEYANILLMNTLTTILFLNPSTLNLPPELFTIN-----LMTKTLLLTSGFLWIRA 280

Query: 309 FVPRYRYDQLMRLGWKVFLPLSFAMVL 335
             PR+RYDQLM L WK FLPL+ A+ L
Sbjct: 281 SYPRFRYDQLMHLLWKQFLPLTLALCL 307


>gnl|CDD|177143 MTH00071, ND1, NADH dehydrogenase subunit 1; Provisional.
          Length = 322

 Score =  276 bits (708), Expect = 6e-75
 Identities = 143/326 (43%), Positives = 212/326 (65%), Gaps = 20/326 (6%)

Query: 11  PLFFMAIKSIVFLVGLLIFIAYVLLMDRKVWAAVQLRRGPNVVGPWGLLQSFADFLKFVF 70
            L  + I  +++++ +L+ +A++ L++RKV   +QLR+GPN+VGP GLLQ  AD LK   
Sbjct: 3   TLISLIINPLLYIIPVLLAVAFLTLVERKVLGYMQLRKGPNIVGPMGLLQPIADGLKLFI 62

Query: 71  KEPIIPSKSNKILFLLAPLVSVILSLSAWAVVPVADGWIIADINVGILYILAISSLEIYG 130
           KEPI PS S++ILF+L P +++ L+L  W  +P+ +   ++++N+GIL+ILA+SSL +Y 
Sbjct: 63  KEPIRPSTSSQILFILMPTMALTLALIIWTPLPMPNN--LSNLNLGILFILALSSLAVYS 120

Query: 131 IIIGGWASNSKYAFLGALRSAAQMISYEVSIGLVIVTVVLCAGSLNLTDIVYSQKSGLGT 190
           I+  GWASNSKYA +GALR+ AQ ISYEV++GL+++ ++L  G  +L +   +Q+     
Sbjct: 121 ILGSGWASNSKYALIGALRAVAQTISYEVTLGLILLCLILLTGGFSLMNFNTTQE----- 175

Query: 191 FLGFPPSMLDWYWLALFPMFVVFFISLLAETNRPPFDLSEAESELVAGYMVEYSSTPYLL 250
                     W  +  +PM  ++FIS LAETNR PFDL+E ESELV+G+ VEY+  P+ L
Sbjct: 176 --------FMWLIIPAWPMAAMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFAL 227

Query: 251 FMLAEYSTIVLMCTLASILFLGGWLPPFDISLFKSIPGFFWLVFKTLGLFFMVAMVKAFV 310
           F LAEY+ I++M TL++ILFLG         L         L+ K   L  +   V+A  
Sbjct: 228 FFLAEYANILMMNTLSTILFLGSTYNHLQPELSTMN-----LMIKASILSMLFLWVRASY 282

Query: 311 PRYRYDQLMRLGWKVFLPLSFAMVLI 336
           PR+RYDQLM L WK FLP++ AM + 
Sbjct: 283 PRFRYDQLMHLVWKNFLPITLAMTIF 308


>gnl|CDD|177192 MTH00134, ND1, NADH dehydrogenase subunit 1; Provisional.
          Length = 324

 Score =  276 bits (707), Expect = 9e-75
 Identities = 146/321 (45%), Positives = 213/321 (66%), Gaps = 24/321 (7%)

Query: 17  IKSIVFLVGLLIFIAYVLLMDRKVWAAVQLRRGPNVVGPWGLLQSFADFLKFVFKEPIIP 76
           I  + ++V +L+ +A++ L++RKV   +QLR+GPN+VGP+GLLQ  AD +K   KEP+ P
Sbjct: 10  INPLAYIVPVLLAVAFLTLLERKVLGYMQLRKGPNIVGPYGLLQPIADGVKLFIKEPVRP 69

Query: 77  SKSNKILFLLAPLVSVILSLSAWAVVPVADGWIIADINVGILYILAISSLEIYGIIIGGW 136
           S S+  LFL  P++++ L+L+ WA +P+   + + D+N+GIL+ILA+SSL +Y I+  GW
Sbjct: 70  STSSPFLFLATPMLALTLALTLWAPMPMP--YPVTDLNLGILFILALSSLAVYSILGSGW 127

Query: 137 ASNSKYAFLGALRSAAQMISYEVSIGLVIVTVVLCAGSLNLTDIVYSQKSGLGTFLGFPP 196
           ASNSKYA +GALR+ AQ ISYEVS+GL++++V++  G   L     +Q+S          
Sbjct: 128 ASNSKYALIGALRAVAQTISYEVSLGLILLSVIIFTGGFTLQTFNTAQES---------- 177

Query: 197 SMLDWYWLALFPMFVVFFISLLAETNRPPFDLSEAESELVAGYMVEYSSTPYLLFMLAEY 256
               W  L  +P+  +++IS LAETNR PFDL+E ESELV+G+ VEY+  P+ LF LAEY
Sbjct: 178 ---IWLLLPAWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEY 234

Query: 257 STIVLMCTLASILFLGGWLPPFDISLFKSIPGF--FWLVFKTLGLFFMVAMVKAFVPRYR 314
           + I+LM TL++ILFLG        S   ++P      L+ K   L  +   V+A  PR+R
Sbjct: 235 ANILLMNTLSAILFLGA-------SHIPTLPELTTINLMTKAALLSVVFLWVRASYPRFR 287

Query: 315 YDQLMRLGWKVFLPLSFAMVL 335
           YDQLM L WK FLPL+ A+V+
Sbjct: 288 YDQLMHLVWKNFLPLTLALVI 308


>gnl|CDD|177115 MTH00040, ND1, NADH dehydrogenase subunit 1; Validated.
          Length = 323

 Score =  273 bits (699), Expect = 7e-74
 Identities = 141/331 (42%), Positives = 209/331 (63%), Gaps = 19/331 (5%)

Query: 13  FFMAIKSIVFLVGLLIFIAYVLLMDRKVWAAVQLRRGPNVVGPWGLLQSFADFLKFVFKE 72
               I  + F+V +L+ +A++ L++RKV   +Q R+GPNVVGP+GLLQ FAD LK   KE
Sbjct: 4   ILFLINLLSFIVPVLLAVAFLTLVERKVLGYMQFRKGPNVVGPYGLLQPFADGLKLFIKE 63

Query: 73  PIIPSKSNKILFLLAPLVSVILSLSAWAVVPVADGWIIADINVGILYILAISSLEIYGII 132
            + PS ++  LF  +P++ + L+L  W+++PV    +  ++N+ +L +L +SSL +Y ++
Sbjct: 64  TLKPSNASPYLFFFSPVLFLFLALLLWSLIPVPTPTL--NVNLSLLLVLGLSSLSVYALL 121

Query: 133 IGGWASNSKYAFLGALRSAAQMISYEVSIGLVIVTVVLCAGSLNLTDIVYSQKSGLGTFL 192
             GWASNSKY+ LGA+R+ AQ ISYE+S+GL+++++V+ +GS +L+ I  SQ        
Sbjct: 122 GSGWASNSKYSLLGAIRAVAQTISYEISLGLILLSLVIFSGSFSLSSISNSQNGS----- 176

Query: 193 GFPPSMLDWYWLALFPMFVVFFISLLAETNRPPFDLSEAESELVAGYMVEYSSTPYLLFM 252
                   W      P+F ++FIS LAETNR PFDL+E ESELV+GY VEY+  P+ LF 
Sbjct: 177 --------WLLFPCLPLFYIWFISTLAETNRAPFDLTEGESELVSGYNVEYAGGPFALFF 228

Query: 253 LAEYSTIVLMCTLASILFLGGWLPPFDISLFKSIPGFFWLVFKTLGLFFMVAMVKAFVPR 312
           +AEY+ I+ M  L+ ILFLGG  P  +I     I     +  KT  L F+   V+A  PR
Sbjct: 229 IAEYANIIFMNLLSVILFLGGGSPFNEIFPINII----IVGIKTTFLVFLFLWVRASYPR 284

Query: 313 YRYDQLMRLGWKVFLPLSFAMVLIVSFFLKI 343
           +RYDQLM L WK +LPLS  +++     L +
Sbjct: 285 FRYDQLMFLTWKNYLPLSIGLLIFYLLLLSL 315


>gnl|CDD|177108 MTH00029, ND1, NADH dehydrogenase subunit 1; Provisional.
          Length = 343

 Score =  271 bits (693), Expect = 3e-73
 Identities = 160/338 (47%), Positives = 222/338 (65%), Gaps = 24/338 (7%)

Query: 15  MAIKSIVFLVGLLIFIAYVLLMDRKVWAAVQLRRGPNVVGPWGLLQSFADFLKFVFKEPI 74
           + IK ++  V LL+ +AY+ L +RKV   +Q R+GP +VGPWGL+Q  AD +K + KE I
Sbjct: 9   VTIKLLIIFVPLLLSVAYLTLAERKVLGLMQNRKGPAIVGPWGLVQPIADGVKLLTKELI 68

Query: 75  IPSKSNKILFLLAPLVSVILSLSAWAVVPVADGWIIADINVGILYILAISSLEIYGIIIG 134
           IPS++NK L+ +AP++S  L++ AWA+V +  G  ++D++VG+LY LAISSL +Y I++ 
Sbjct: 69  IPSQANKFLYYIAPIISFTLAILAWAIVTMDQGVFLSDLDVGVLYFLAISSLSVYAILLS 128

Query: 135 GWASNSKYAFLGALRSAAQMISYEVSIGLVIVTVVLCAGSLNLTDIVYSQKSGLGTFLGF 194
           GWASNS+Y FLGA+R AAQMISYEV+IGL+I++V+LC GSLN+++IV SQ+S        
Sbjct: 129 GWASNSRYPFLGAIRCAAQMISYEVAIGLIIISVILCVGSLNISEIVISQRS-------- 180

Query: 195 PPSMLDWYWLALFPMFVVFFISLLAETNRPPFDLSEAESELVAGYMVEYSSTPYLLFMLA 254
                 W  + LFP  ++F ++ LAET R PFDL+E ESELV+G+ VEYSS  + LF LA
Sbjct: 181 -----VWLIIPLFPAAIMFMVASLAETARAPFDLTEGESELVSGFNVEYSSLSFALFFLA 235

Query: 255 EYSTIVLMCTLASILFLGGWLPPFDISL-----------FKSIPGFFWLVFKTLGLFFMV 303
           EYS I+LM  + +I FLGGWL P D                S    FW   K+       
Sbjct: 236 EYSNIILMSCMMTIFFLGGWLSPLDGIPTPPEAFSIFEQIASSKSSFWFFTKSSIFILFF 295

Query: 304 AMVKAFVPRYRYDQLMRLGWKVFLPLSFAMVLIVSFFL 341
              +A  PR RYDQLM+L WK +LPLS  +V++ +  L
Sbjct: 296 IWSRASFPRIRYDQLMKLLWKTYLPLSLGLVILTAGIL 333


>gnl|CDD|177258 MTH00218, ND1, NADH dehydrogenase subunit 1; Provisional.
          Length = 311

 Score =  269 bits (690), Expect = 8e-73
 Identities = 150/336 (44%), Positives = 216/336 (64%), Gaps = 28/336 (8%)

Query: 12  LFFMAIKSIVFLVGLLIFIAYVLLMDRKVWAAVQLRRGPNVVGPWGLLQSFADFLKFVFK 71
           +    I  +++++ +L+ +A++ L++RKV   +QLR+GPNVVGP+GLLQ  AD +K   K
Sbjct: 1   MLLSLINLLLYILPVLLAVAFLTLLERKVLGYMQLRKGPNVVGPYGLLQPIADGVKLFIK 60

Query: 72  EPIIPSKSNKILFLLAPLVSVILSLSAWAVVPVADGWIIADINVGILYILAISSLEIYGI 131
           EPI PS S+  LFLLAP++++ L+L  W  +P+     + ++N+G+L+ILAISSL +Y I
Sbjct: 61  EPIRPSTSSPFLFLLAPILALTLALLLWMPLPLPFS--LINLNLGVLFILAISSLGVYSI 118

Query: 132 IIGGWASNSKYAFLGALRSAAQMISYEVSIGLVIVTVVLCAGSLNLTDIVYSQKSGLGTF 191
           +  GWASNSKYA +GALR+ AQ ISYEVS+GL+I+++++  G  +L     +Q++     
Sbjct: 119 LWSGWASNSKYALMGALRAVAQTISYEVSLGLIILSLIILTGGFSLEGFNLTQETI---- 174

Query: 192 LGFPPSMLDWYWLALFPMFVVFFISLLAETNRPPFDLSEAESELVAGYMVEYSSTPYLLF 251
                    W  +  +P+ +++FIS LAETNR PFDL+E ESELV+G+ VEYS  P+ LF
Sbjct: 175 ---------WLLIPEWPLALMWFISTLAETNRAPFDLTEGESELVSGFNVEYSGGPFALF 225

Query: 252 MLAEYSTIVLMCTLASILFLGGWLPPFDISLFKSIPGFFWLVFKTLGLFFMVAMVKAFVP 311
            LAEY  I+ M TL+ ILFLG  L                L+ K   L F+   V+A +P
Sbjct: 226 FLAEYMNILFMNTLSVILFLGTSLT------------TINLMLKATLLVFLFLWVRASLP 273

Query: 312 RYRYDQLMRLGWKVFLPLSFA-MVLIVSFFLKIYTL 346
           R+RYDQLM L WK FLPLS A ++L  S  L   +L
Sbjct: 274 RFRYDQLMHLAWKNFLPLSLALLLLHTSLPLSFASL 309


>gnl|CDD|177166 MTH00104, ND1, NADH dehydrogenase subunit 1; Provisional.
          Length = 318

 Score =  261 bits (670), Expect = 2e-70
 Identities = 136/319 (42%), Positives = 214/319 (67%), Gaps = 20/319 (6%)

Query: 17  IKSIVFLVGLLIFIAYVLLMDRKVWAAVQLRRGPNVVGPWGLLQSFADFLKFVFKEPIIP 76
           I  ++ ++ +L+ +A++ L++RKV   +QLR+GPN+VGP+GLLQ FAD +K   KEP+ P
Sbjct: 4   INILLLIIPILLAVAFLTLVERKVLGYMQLRKGPNIVGPYGLLQPFADAMKLFTKEPLRP 63

Query: 77  SKSNKILFLLAPLVSVILSLSAWAVVPVADGWIIADINVGILYILAISSLEIYGIIIGGW 136
             S+  +F++AP++++ L+L+ W  +P+    I  ++N+G+L+ILA+SSL +Y I+  GW
Sbjct: 64  LTSSTTMFIIAPILALTLALTMWIPLPMPYPLI--NMNLGVLFILAMSSLAVYSILWSGW 121

Query: 137 ASNSKYAFLGALRSAAQMISYEVSIGLVIVTVVLCAGSLNLTDIVYSQKSGLGTFLGFPP 196
           ASNSKYA +GALR+ AQ ISYEV++ +++++V+L  GS  L+ ++ +Q+           
Sbjct: 122 ASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMNGSFTLSTLITTQEHL--------- 172

Query: 197 SMLDWYWLALFPMFVVFFISLLAETNRPPFDLSEAESELVAGYMVEYSSTPYLLFMLAEY 256
               W     +P+ +++FIS LAETNR PFDL+E ESELV+G+ VEY++ P+ LF +AEY
Sbjct: 173 ----WLIFPSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEY 228

Query: 257 STIVLMCTLASILFLGGWLPPFDISLFKSIPGFFWLVFKTLGLFFMVAMVKAFVPRYRYD 316
           + I++M  L +ILFLG +  P+   L+           KTL L  +   ++A  PR+RYD
Sbjct: 229 ANIIMMNALTTILFLGAFHNPYMPELYT-----TNFTIKTLLLTILFLWIRASYPRFRYD 283

Query: 317 QLMRLGWKVFLPLSFAMVL 335
           QLM L WK FLPL+ A+ +
Sbjct: 284 QLMHLLWKNFLPLTLALCM 302


>gnl|CDD|39967 KOG4770, KOG4770, KOG4770, NADH dehydrogenase subunit 1 [Energy
           production and conversion].
          Length = 315

 Score =  256 bits (655), Expect = 7e-69
 Identities = 154/325 (47%), Positives = 219/325 (67%), Gaps = 20/325 (6%)

Query: 17  IKSIVFLVGLLIFIAYVLLMDRKVWAAVQLRRGPNVVGPWGLLQSFADFLKFVFKEPIIP 76
              ++ ++ +L  +A++ L++RK+   +Q R+GPN VGP GLLQ  AD +K + KE + P
Sbjct: 7   AMILLLIIPILQSVAFLTLLERKILGYIQNRKGPNKVGPMGLLQPLADGVKLLTKEQLTP 66

Query: 77  SKSNKILFLLAPLVSVILSLSAWAVVPVADGWIIADINVGILYILAISSLEIYGIIIGGW 136
             SN++LFL+AP +S +LSL  W V+P     ++  +N+G+L+ LAISSL +Y I+I GW
Sbjct: 67  LNSNEVLFLIAPGISFVLSLLEWFVLPFF--NVLISLNIGLLFFLAISSLAVYTILISGW 124

Query: 137 ASNSKYAFLGALRSAAQMISYEVSIGLVIVTVVLCAGSLNLTDIVYSQKSGLGTFLGFPP 196
           +SNSKYAFLGALR+AAQ ISYEVS+ L+++++++ +GS NL+DI  +Q +          
Sbjct: 125 SSNSKYAFLGALRAAAQSISYEVSLALILLSIIILSGSFNLSDIFVAQFN---------- 174

Query: 197 SMLDWYWLALFPMFVVFFISLLAETNRPPFDLSEAESELVAGYMVEYSSTPYLLFMLAEY 256
               W  + LFP  ++FFIS LAETNR PFDL E ESELVAG+ VEYSS  + LF LAEY
Sbjct: 175 ---LWLLIILFPFAIMFFISSLAETNRAPFDLPEGESELVAGFNVEYSSGGFALFFLAEY 231

Query: 257 STIVLMCTLASILFLGGWLPPFDISLFKSIPGFFWLVFKTLGLFFMVAMVKAFVPRYRYD 316
           + ++ M  L+++LFLGGW P   + LF      F  +FKT  + F+   +++  PRYRYD
Sbjct: 232 ANLIFMSVLSTVLFLGGWSPYLILELFS-----FIFIFKTFLILFLFIWIRSTYPRYRYD 286

Query: 317 QLMRLGWKVFLPLSFAMVLIVSFFL 341
           QLM LGWK FLP+S AM+L  + F 
Sbjct: 287 QLMSLGWKKFLPISLAMLLFYASFF 311


>gnl|CDD|177201 MTH00143, ND1, NADH dehydrogenase subunit 1; Provisional.
          Length = 307

 Score =  256 bits (656), Expect = 8e-69
 Identities = 130/325 (40%), Positives = 192/325 (59%), Gaps = 22/325 (6%)

Query: 17  IKSIVFLVGLLIFIAYVLLMDRKVWAAVQLRRGPNVVGPWGLLQSFADFLKFVFKEPIIP 76
           + S+   + +L+ +A+  L++RK     Q+R+GPN VG  GL Q  AD +K   KE + P
Sbjct: 5   LSSVFTYLCVLLAVAFFTLLERKGLGYFQIRKGPNKVGLMGLPQPLADAVKLFTKEFVKP 64

Query: 77  SKSNKILFLLAPLVSVILSLSAWAVVPVADGWIIADINVGILYILAISSLEIYGIIIGGW 136
           + SNK  F LAP +S+IL+L  W + P    +  +    G+L+ L +SSL +YG+++ GW
Sbjct: 65  TMSNKFPFFLAPCLSLILALLLWQLYPSY--FSSSYFGWGLLFFLCVSSLNVYGVLLAGW 122

Query: 137 ASNSKYAFLGALRSAAQMISYEVSIGLVIVTVVLCAGSLNLTDIVYSQKSGLGTFLGFPP 196
           +SNSKYA LGA+R+ AQ ISYEVS+ L+++  +  +GS +  +I  SQ S    FL    
Sbjct: 123 SSNSKYALLGAVRAVAQTISYEVSMSLILLFPLFLSGSFSFIEISESQFSVWLGFL---- 178

Query: 197 SMLDWYWLALFPMFVVFFISLLAETNRPPFDLSEAESELVAGYMVEYSSTPYLLFMLAEY 256
                    +FP+F+++F+S LAETNR PFD +E ESELV+G+ VEY    + L  LAEY
Sbjct: 179 ---------MFPVFLMWFVSCLAETNRAPFDFAEGESELVSGFNVEYGGGGFALLFLAEY 229

Query: 257 STIVLMCTLASILFLGGWLPPFDISLFKSIPGFFWLVFKTLGLFFMVAMVKAFVPRYRYD 316
           + I+ M  L  +LF GG       S    + G    +FK L   F+   V+A  PR+RYD
Sbjct: 230 ANILFMSLLTVVLFFGG-------SSVLFLLGGVVFMFKVLFFAFLFIWVRASYPRFRYD 282

Query: 317 QLMRLGWKVFLPLSFAMVLIVSFFL 341
            LM L WK FLP S +++++    +
Sbjct: 283 LLMMLCWKSFLPFSLSILVLFVVLV 307


>gnl|CDD|177261 MTH00225, ND1, NADH dehydrogenase subunit 1; Provisional.
          Length = 305

 Score =  246 bits (629), Expect = 9e-66
 Identities = 145/328 (44%), Positives = 199/328 (60%), Gaps = 25/328 (7%)

Query: 14  FMAIKSIVFLVGLLIFIAYVLLMDRKVWAAVQLRRGPNVVGPWGLLQSFADFLKFVFKEP 73
              +K ++ L+ LL+ +A+  L++RKV   +QLR+GPN VG  GL Q FAD LK   KE 
Sbjct: 2   SFLLKFLIMLICLLLSVAFYTLLERKVLGYIQLRKGPNKVGLMGLPQPFADALKLFTKEQ 61

Query: 74  IIPSKSNKILFLLAPLVSVILSLSAWAVVPVADGWIIADINVGILYILAISSLEIYGIII 133
             P  SNK+ + +AP++S+ILSL  W++ P    + I     GIL+ L ISSL +Y I++
Sbjct: 62  TKPQLSNKLPYYIAPILSLILSLILWSLYPSM--FSIYSFKFGILFFLCISSLNVYTILL 119

Query: 134 GGWASNSKYAFLGALRSAAQMISYEVSIGLVIVTVVLCAGSLNLTDIVYSQKSGLGTFLG 193
            GW+SNSKYA LGALR+ AQ ISYEVS+ L+++++V    + NL D  Y+QK        
Sbjct: 120 AGWSSNSKYALLGALRAVAQTISYEVSMALILLSIVFLVLTYNLFDFSYNQK-------- 171

Query: 194 FPPSMLDWYWLALFPMFVVFFISLLAETNRPPFDLSEAESELVAGYMVEYSSTPYLLFML 253
                  W+   LFP+F  + IS+LAETNR PFD +E ESELV+G+ +EYSS  + L  +
Sbjct: 172 -----YFWFMFVLFPLFFCWMISMLAETNRAPFDFAEGESELVSGFNIEYSSGGFALIFM 226

Query: 254 AEYSTIVLMCTLASILFLGGWLPPFDISLFKSIPGFFWLVFKTLGLFFMVAMVKAFVPRY 313
           AEY +I+ M  L SILF GG         F +I  F   + K + L F    V+  +PR 
Sbjct: 227 AEYGSILFMSMLTSILFFGG--------FFVTIDLFL--ILKIMLLAFWFIWVRGVLPRM 276

Query: 314 RYDQLMRLGWKVFLPLSFAMVLIVSFFL 341
           RYD+LM L WK FLPLS A + +V   L
Sbjct: 277 RYDKLMSLTWKSFLPLSLAYLFMVLIIL 304


>gnl|CDD|177241 MTH00193, ND1, NADH dehydrogenase subunit 1; Provisional.
          Length = 306

 Score =  243 bits (622), Expect = 6e-65
 Identities = 139/333 (41%), Positives = 202/333 (60%), Gaps = 28/333 (8%)

Query: 12  LFFMAIKSIVFLVGLLIFIAYVLLMDRKVWAAVQLRRGPNVVGPWGLLQSFADFLKFVFK 71
           L  M I  ++ ++ +L+ +A++ L++RKV   +Q+R+GPN VG  G+LQ F+D +K   K
Sbjct: 1   LMMMLINFLLLIICVLVSVAFLTLLERKVLGYIQIRKGPNKVGFMGILQPFSDAIKLFTK 60

Query: 72  EPIIPSKSNKILFLLAPLVSVILSLSAWAVVPVADGWIIADINVGILYILAISSLEIYGI 131
           E   P  SN +L+  +P+ S+ LSL  W + P    + +   N+GIL+ L  SSL +Y +
Sbjct: 61  EQTYPLMSNYLLYYFSPVFSLFLSLLIWLIYPY--LFNLISFNLGILFFLCCSSLGVYTV 118

Query: 132 IIGGWASNSKYAFLGALRSAAQMISYEVSIGLVIVTVVLCAGSLNLTDIVYSQKSGLGTF 191
           +I GW+SNSKY+ LG+LRS AQ ISYEVS+ L++++ +   GS NL D +  QK      
Sbjct: 119 MIAGWSSNSKYSLLGSLRSVAQTISYEVSLALILLSFIFLIGSFNLLDFMNYQKYI---- 174

Query: 192 LGFPPSMLDWYWLALFPMFVVFFISLLAETNRPPFDLSEAESELVAGYMVEYSSTPYLLF 251
                    W+    FP+F+++F+S LAETNR PFD +E ESELV+G+ VEYSS  + L 
Sbjct: 175 ---------WFIFFSFPLFLIWFVSCLAETNRTPFDFAEGESELVSGFNVEYSSGGFALI 225

Query: 252 MLAEYSTIVLMCTLASILFLGGWLPPFDISLFKSIPGFFWLVFKTLGLFFMVAMVKAFVP 311
            LAEYS+I+ M  L  ++FLGG L              F+   K L + F+   V+  +P
Sbjct: 226 FLAEYSSILFMSMLFVLMFLGGDLLSL----------LFY--LKLLFISFLFIWVRGTLP 273

Query: 312 RYRYDQLMRLGWKVFLPLSFAMVLIVSFFLKIY 344
           R+RYD+LM L WK FLPLS    L+  F LKI+
Sbjct: 274 RFRYDKLMYLAWKSFLPLSL-NYLLFFFGLKIF 305


>gnl|CDD|177242 MTH00195, ND1, NADH dehydrogenase subunit 1; Provisional.
          Length = 307

 Score =  233 bits (595), Expect = 7e-62
 Identities = 141/327 (43%), Positives = 198/327 (60%), Gaps = 30/327 (9%)

Query: 17  IKSIVFLVGLLIFIAYVLLMDRKVWAAVQLRRGPNVVGPWGLLQSFADFLKFVFKEPIIP 76
           I  ++ +V +L+ +A+  L++RK+   +QLR+GPN VGP+GLLQ  AD +K   KEP+ P
Sbjct: 6   IHFLIQIVPVLLAVAFFTLLERKILGYIQLRKGPNKVGPYGLLQPIADAVKLFIKEPVKP 65

Query: 77  SKSNKILFLLAPLVSVILSLSAWAVVPVADGWIIADINVGILYILAISSLEIYGIIIGGW 136
           S S+  LF  AP++++ L+L  W  +P   G   + IN+ +L+ L +SSL +Y I+  GW
Sbjct: 66  STSSLWLFFFAPVLALALALILWVPIPSPFG--FSSINLSVLFFLCVSSLSVYSILGSGW 123

Query: 137 ASNSKYAFLGALRSAAQMISYEVSIGLVIVTVVLCAGSLNLTDIVYSQKSGLGTFLGFPP 196
           ASNSKYA LGA+R+ AQ ISYEVS+GL+I+  +  AGS + T +V SQ        GF  
Sbjct: 124 ASNSKYALLGAIRAVAQTISYEVSMGLIILCPICLAGSFDFTIMVISQ--------GFS- 174

Query: 197 SMLDWYWLALFPMFVVFFISLLAETNRPPFDLSEAESELVAGYMVEYSSTPYLLFMLAEY 256
               W  L   P+  ++++S LAETNR PFD +E ESELV+G+ VEY+  P+ L  +AEY
Sbjct: 175 ----WVILLCPPISFMWYVSTLAETNRAPFDFAEGESELVSGFNVEYAGGPFALIFMAEY 230

Query: 257 STIVLMCTLASILFLGGWLPPFDISLFKSIPGFFWLVFKTLGLFFMVAMVKAFVPRYRYD 316
           S I+ M  L +ILFLGG              G   +  K+L L F    V+  +PR+RYD
Sbjct: 231 SNIIFMSVLTTILFLGG-------------GGTIIVALKSLFLSFCFLWVRGSLPRFRYD 277

Query: 317 QLMRLGWKVFLP--LSFAMVLIVSFFL 341
           QLM L WK +LP  LS  + L    F 
Sbjct: 278 QLMHLTWKCYLPLILSLLIPLAAIPFA 304


>gnl|CDD|164586 MTH00010, ND1, NADH dehydrogenase subunit 1; Validated.
          Length = 311

 Score =  215 bits (549), Expect = 2e-56
 Identities = 131/333 (39%), Positives = 191/333 (57%), Gaps = 26/333 (7%)

Query: 13  FFMAIKSIVFLVGLLIFIAYVLLMDRKVWAAVQLRRGPNVVGPWGLLQSFADFLKFVFKE 72
           FF++I  ++  V  L+ +A+  L++RK     QLR+GPN VG  G+ Q FAD +K   KE
Sbjct: 5   FFISI--LLSYVMALLAMAFYTLLERKALGYFQLRKGPNKVGLAGIPQPFADAIKLFTKE 62

Query: 73  PIIPSKSNKILFLLAPLVSVILSLSAWAVVPVADGWIIADINVGILYILAISSLEIYGII 132
              PS +N   FL AP++S+IL+L  W++ P         +   IL  L +SS+ +Y  +
Sbjct: 63  QTKPSPANITPFLGAPMMSLILALLLWSLYPHKHPSFF--LKFSILLFLCVSSMNVYTTL 120

Query: 133 IGGWASNSKYAFLGALRSAAQMISYEVSIGLVIVTVVLCAGSLNLTDIVYSQKSGLGTFL 192
             GW SNSKYA LGALRS AQ ISYEVS+ L++++ +L   + + + I+ SQ S      
Sbjct: 121 GAGWTSNSKYALLGALRSVAQTISYEVSMSLILLSALLILQTFSFSKIIMSQYS------ 174

Query: 193 GFPPSMLDWYWLALFPMFVVFFISLLAETNRPPFDLSEAESELVAGYMVEYSSTPYLLFM 252
                   W  L + P+ V +FI+ LAETNR PFD +E ESELV+G+ VEYSS  + L  
Sbjct: 175 --------WILLMIIPLTVSWFITNLAETNRTPFDFAEGESELVSGFNVEYSSGLFALIF 226

Query: 253 LAEYSTIVLMCTLASILFLGGWLPPFDISLFKSIPGFFWLVFKTLGLFFMVAMVKAFVPR 312
           +AEY+ I++M    S+ F   ++P   IS          L+ KT+ L F+   ++A  PR
Sbjct: 227 MAEYANILIMSLFTSVFFT-SFIPSIFISD-------LMLILKTVFLAFLFIWIRATFPR 278

Query: 313 YRYDQLMRLGWKVFLPLSFAMVLIVSFFLKIYT 345
            RYD+LM L WK FLP+S   ++I    + +  
Sbjct: 279 MRYDRLMNLTWKSFLPMSLTSLMISIPIMFLLL 311


>gnl|CDD|176973 CHL00032, ndhA, NADH dehydrogenase subunit 1.
          Length = 363

 Score =  210 bits (536), Expect = 6e-55
 Identities = 126/344 (36%), Positives = 201/344 (58%), Gaps = 26/344 (7%)

Query: 12  LFFMAIKSIVFLVGLLIFIAYVLLMDRKVWAAVQLRRGPNVVGPWGLLQSFADFLKFVFK 71
           L ++ +  +  ++G+ I +  ++ ++R++ A +Q R GP   GP G+LQ+ AD  K +FK
Sbjct: 26  LIWILVPILTLVLGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGTKLLFK 85

Query: 72  EPIIPSKSNKILFLLAPLVSVILSLSAWAVVPVADGWIIADINVGILYILAISSLEIYGI 131
           E ++PS+ +  LF + P ++VI  L ++ V+P     ++AD+++G+   +AISS+   G+
Sbjct: 86  EDLLPSRGDIRLFSIGPSIAVISILLSYLVIPFGYHLVLADLSIGVFLWIAISSIAPIGL 145

Query: 132 IIGGWASNSKYAFLGALRSAAQMISYEVSIGLVIVTVVLCAGSLNLTDIVYSQKSGLGTF 191
           ++ G+ SN+KY+FLG LR+AAQ ISYE+ + L ++++ L + SL+  DIV +Q       
Sbjct: 146 LMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLLSNSLSTVDIVEAQSK----- 200

Query: 192 LGFPPSMLDWYW-LALFPM-FVVFFISLLAETNRPPFDLSEAESELVAGYMVEYSSTPYL 249
            GF      W W L   P+ F+VF IS LAE  R PFDL EAE ELVAGY  EYS   + 
Sbjct: 201 YGF------WGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFG 254

Query: 250 LFMLAEYSTIVLMCTLASILFLGGW---------LPPFDIS----LFKSIPGFFWLVFKT 296
           LF +A Y  +++     ++L+LGGW            F+I+    +F +  G F  + KT
Sbjct: 255 LFYVASYLNLLVSSLFVTVLYLGGWNLSIPYIFIPELFEINKTGGVFGTTIGIFITLAKT 314

Query: 297 LGLFFMVAMVKAFVPRYRYDQLMRLGWKVFLPLSFAMVLIVSFF 340
               F+    +  +PR R DQL+ LGWK  LP+S   +L+ + F
Sbjct: 315 YLFLFISITTRWTLPRLRMDQLLNLGWKFLLPISLGNLLLTTSF 358


>gnl|CDD|177153 MTH00090, ND1, NADH dehydrogenase subunit 1; Provisional.
          Length = 284

 Score =  150 bits (382), Expect = 4e-37
 Identities = 101/322 (31%), Positives = 166/322 (51%), Gaps = 41/322 (12%)

Query: 20  IVFLVGLLIFIAYVLLMDRKVWAAVQLRRGPNVVGPWGLLQSFADFLKFVFKEPIIPSKS 79
           ++ ++ +L  IA++ L +R +  + Q R GPN V   G+LQ+  D +K + KE ++P  S
Sbjct: 3   LLMMIFILQAIAFITLYERHLLGSSQNRLGPNKVSFMGVLQALLDGVKLLKKEQMLPLNS 62

Query: 80  NKILFLLAPLVSVILSLSAWAVVPVADGWIIADINVGILYILAISSLEIYGIIIGGWASN 139
           + + FLL P VS ++    W V+P    ++       +L+ L +    +Y  +I G  S 
Sbjct: 63  SDLSFLLVPGVSFVVMYLEWFVLPYFFDFL--SFEYSLLFFLCLIGFSVYTTLISGIVSK 120

Query: 140 SKYAFLGALRSAAQMISYEVSIGLVIVTVVLCAGSLNLTDIVYSQKSGLGTFLGFPPSML 199
           SKY FLGALR+++Q ISYE++  L +++++L   S +                       
Sbjct: 121 SKYGFLGALRASSQSISYEIAFSLYLLSIMLHNNSFSFVSS------------------- 161

Query: 200 DWYWLALFPMFVVFFISLLAETNRPPFDLSEAESELVAGYMVEYSSTPYLLFMLAEYSTI 259
             + L+LF +++ F I ++AE NR PFD SE ESELV+GY VEYSS  ++L  L+EY ++
Sbjct: 162 --FSLSLFVIYLPFLIMIIAELNRAPFDFSEGESELVSGYNVEYSSVAFVLLFLSEYGSL 219

Query: 260 VLMCTLASILFLGGWLPPFDISLFKSIPGFFWLVFKTLGLFFMVAMVKAFVPRYRYDQLM 319
           +    L S+LF       F  S           +     +F ++  +++  PR+RYD +M
Sbjct: 220 IFFSVLTSVLF-------FKFSF------LMLFL-----IFSLLIFIRSSYPRFRYDMMM 261

Query: 320 RLGWKVFLPLSFAMVLIVSFFL 341
            + W  FLPLS   +       
Sbjct: 262 SMFWFKFLPLSLIFLGFFVVLF 283


>gnl|CDD|177130 MTH00058, ND1, NADH dehydrogenase subunit 1; Provisional.
          Length = 293

 Score =  149 bits (378), Expect = 1e-36
 Identities = 101/326 (30%), Positives = 161/326 (49%), Gaps = 35/326 (10%)

Query: 13  FFMAIKSIVFLVGLLIFIAYVLLMDRKVWAAVQLRRGPNVVGPWGLLQSFADFLKFVFKE 72
            F  +  +  L+ +L+ +A+ +L +RK+   +QLR+GPN VG  GLLQSFAD LK V K 
Sbjct: 1   IFGLVSGLEGLLIILLLVAFFILGERKILGYIQLRKGPNKVGIVGLLQSFADLLKLVVKF 60

Query: 73  PIIPSKSNKILFLLAPLVSVILSLSAWAVVPVADGWIIADINVGILYILAISSLEIYGII 132
            +   +S     L    + V+L +    +         +  ++ +L+ L ++S   Y ++
Sbjct: 61  KVYGFQSRSWFSLFGVFLLVLLVVFYCFIYGSYYSGSYS--SLSLLWFLVVTSFSSYSLL 118

Query: 133 IGGWASNSKYAFLGALRSAAQMISYEVSIGLVIVTVVLCAGSLNLTDIVYSQKSGLGTFL 192
             GW S +KY+ L ++RSA   +S+E     +++   LC GS +L D  YS         
Sbjct: 119 CVGWGSYNKYSLLSSIRSAFGSVSFEACFMCIVIFCGLCYGSYSLVDFYYS--------- 169

Query: 193 GFPPSMLDWYWLALFP-MFVVFFISLLAETNRPPFDLSEAESELVAGYMVEYSSTPYLLF 251
                   W  + LFP +++++ + +L ETNR PFD  E+ESELV+G+  EYS   +   
Sbjct: 170 -------GWLSVLLFPLIYILWLVCILCETNRTPFDYGESESELVSGFNTEYSGIYFTCL 222

Query: 252 MLAEYSTIVLMCTLASILFLGGWLPPFDISLFKSIPGFFWLVFKTLGLFFMVAMVKAFVP 311
              EY  I +   L S+LF GG              GF  ++     LFFM A  +A +P
Sbjct: 223 FACEYLIIFIFSWLGSVLFFGG--------------GFVSIMLLFHLLFFMWA--RATLP 266

Query: 312 RYRYDQLMRLGWKVFLPLSFAMVLIV 337
           R RYD  +   W+  L L    + ++
Sbjct: 267 RVRYDYFVNFFWEYCLVLLILSLFVI 292


>gnl|CDD|30995 COG0650, HyfC, Formate hydrogenlyase subunit 4 [Energy production
           and conversion].
          Length = 309

 Score =  102 bits (256), Expect = 1e-22
 Identities = 88/329 (26%), Positives = 149/329 (45%), Gaps = 27/329 (8%)

Query: 17  IKSIVFLVGLLIFIAYVLL-------MDRKVWAAVQLRRGPNVVGPWGLLQSFADFLKFV 69
           +  ++ ++G L+ +    L       + RKV A +Q R GP       +LQ + D LK +
Sbjct: 1   MLMLMSVIGALLQLIIAFLVAPLLSGITRKVRARIQRRIGP------PILQPYYDTLKLL 54

Query: 70  FKEPIIPSKSNKILFLLAPLVSVILSLSAWAVVPVADGWIIADINVGILYILAISSLEIY 129
            KE +IP+ S+  LF LAP +++   L    ++P+            ++ +L +  L  +
Sbjct: 55  GKETVIPA-SSGWLFRLAPYLALGTLLLLALIIPL-VFVGPLAPLGDLIVLLYLLELARF 112

Query: 130 GIIIGGWASNSKYAFLGALRSAAQMISYEVSIGLVIVTVVLCAGSLNLTDIVYSQKSGLG 189
            + + G +S S +  +GA R    +   E  + LV+  + L AGS N++DIV  Q     
Sbjct: 113 FLALAGLSSGSPFGGIGASRELTLIALVEPPLLLVLFALALVAGSTNISDIVAYQAHHGP 172

Query: 190 TFLGFPPSMLDWYWLALFPMFVVFFISLLAETNRPPFDLSEAESELVAGYMVEYSSTPYL 249
                         L L    + FFI L  ET + PFD++EAE+E++ G + EYS     
Sbjct: 173 LLFS----------LPLVLAAIAFFILLFIETGKLPFDIAEAETEIIEGPLTEYSGKLLA 222

Query: 250 LFMLAEYSTIVLMCTLASILFLGGWLPPFDISLFKSIPGFFWLVFKTLGLFFMVAMVKAF 309
           L   AE     ++ +L   +FLG W     I     +      + K L L  + A+ +A 
Sbjct: 223 LLKWAEAIKQFVLLSLFVNVFLGPWGLIETII--AGLTALVVTLLKALVLTVLAALFEAT 280

Query: 310 VPRYRYDQLMRLGWKVFLPLSFAMVLIVS 338
           + R R  Q+++  W  F   + A  L++ 
Sbjct: 281 LARLRLFQVVKFLWTAFFLAALAFALLLL 309


>gnl|CDD|38880 KOG3676, KOG3676, KOG3676, Ca2+-permeable cation channel OSM-9 and
           related channels (OTRPC family) [Inorganic ion transport
           and metabolism, Signal transduction mechanisms].
          Length = 782

 Score = 34.1 bits (78), Expect = 0.064
 Identities = 31/151 (20%), Positives = 52/151 (34%), Gaps = 11/151 (7%)

Query: 202 YWLALFPMFVVFFISL-LAETNRPPFDLSEAESELVAGYMVEYSSTPYLLFMLAEYSTIV 260
            +     +++++ I   LA   RP  + ++   E    Y+ +Y         L     I+
Sbjct: 395 QFFMSLLIYLLYMICFTLAFYYRPALEQAKLLDE---AYINDYDELRLAGETLTLLGGIL 451

Query: 261 LMCTLASILFLGGWLPPFDISLFKSIPGFFWLVFKTLGLFFMVAMVKAFVPRYRYDQLMR 320
            +      +FL G   P         P F  L F    +  +V+ V           L+ 
Sbjct: 452 FLFCELPDIFLQGL--PAYNGQLIDGPLFHVLGF-LQAVLVLVSPVLRLGAIKWELALLV 508

Query: 321 ----LGWKVFLPLSFAMVLIVSFFLKIYTLI 347
               LGWK  L  +    L   F + IY +I
Sbjct: 509 FALVLGWKNLLYFTRGFQLTGPFVIMIYKMI 539


>gnl|CDD|31977 COG1792, MreC, Cell shape-determining protein [Cell envelope
          biogenesis, outer membrane].
          Length = 284

 Score = 29.9 bits (67), Expect = 0.98
 Identities = 12/64 (18%), Positives = 31/64 (48%), Gaps = 2/64 (3%)

Query: 11 PLFFMAIKSIVFLVGLLIFIAYVLLMDRKVWAAVQLRRGPN-VVGP-WGLLQSFADFLKF 68
          P+F +     +FLV +++ +  +L  D +   +  +R+    V+ P   ++ +  +F+  
Sbjct: 1  PIFSLNKLLKIFLVLIILLLLLLLFADSRGQVSSIIRQVVGTVLSPVQSVVAAPFEFVDG 60

Query: 69 VFKE 72
          V + 
Sbjct: 61 VLEF 64


>gnl|CDD|173749 cd07855, STKc_ERK5, Catalytic domain of the Serine/Threonine
           Kinase,  Extracellular signal-Regulated Kinase 5.
           Serine/Threonine Kinases (STKs), Extracellular
           signal-Regulated Kinase 5 (ERK5) subfamily, catalytic
           (c) domain. STKs catalyze the transfer of the
           gamma-phosphoryl group from ATP to serine/threonine
           residues on protein substrates. The ERK5 subfamily is
           part of a larger superfamily that includes the catalytic
           domains of other protein STKs, protein tyrosine kinases,
           RIO kinases, aminoglycoside phosphotransferase, choline
           kinase, and phosphoinositide 3-kinase. MAPKs are
           important mediators of cellular responses to
           extracellular signals. ERK5, also called Big MAPK1
           (BMK1) or MAPK7, has a unique C-terminal extension,
           making it approximately twice as big as other MAPKs.
           This extension contains transcriptional activation
           capability which is inhibited by the N-terminal half.
           ERK5 is activated in response to growth factors and
           stress by a cascade that leads to its phosphorylation by
           the MAP2K MEK5, which in turn is regulated by the MAP3Ks
           MEKK2 and MEKK3. Activated ERK5 phosphorylates its
           targets including myocyte enhancer factor 2 (MEF2),
           Sap1a, c-Myc, and RSK. It plays a role in EGF-induced
           cell proliferation during the G1/S phase transition.
           Studies on knockout mice revealed that ERK5 is essential
           for cardiovascular development and plays an important
           role in angiogenesis. It is also critical for neural
           differentiation and survival. The ERK5 pathway has been
           implicated in the pathogenesis of many diseases
           including cancer, cardiac hypertrophy, and
           atherosclerosis.
          Length = 334

 Score = 29.2 bits (66), Expect = 1.7
 Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 5/43 (11%)

Query: 232 ESELVAGYMVEYSST-----PYLLFMLAEYSTIVLMCTLASIL 269
                  +M EY +T     P LL  L EY+T + M ++  I 
Sbjct: 160 SPTEHKYFMTEYVATRWYRAPELLLSLPEYTTAIDMWSVGCIF 202


>gnl|CDD|112412 pfam03594, BenE, Benzoate membrane transport protein. 
          Length = 378

 Score = 29.2 bits (66), Expect = 1.7
 Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 3/43 (6%)

Query: 271 LGGWLPPFDISLFKSIPGFFWLVFKTLGLFFMVAMVKAFVPRY 313
           L G L PF +  F ++P    LV   L  +    + + F PRY
Sbjct: 126 LAGILLPFGLKAFAALPQQPLLVLPMLLSYL---LARRFAPRY 165


>gnl|CDD|35388 KOG0166, KOG0166, KOG0166, Karyopherin (importin) alpha
           [Intracellular trafficking, secretion, and vesicular
           transport].
          Length = 514

 Score = 27.6 bits (61), Expect = 4.7
 Identities = 25/106 (23%), Positives = 43/106 (40%), Gaps = 20/106 (18%)

Query: 20  IVFLVGLLIFIAYVLLMDRKV-WAAVQLRRGPNVVGPWGLLQSFADFLKFVFKEPIIPSK 78
            +  +  L+  +  L M R   W    L RG N   P+ ++             PI+P+ 
Sbjct: 195 ALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVA------------PILPA- 241

Query: 79  SNKILFLLAPLVSVILSLSAWAVVPVADGW---IIADINVGILYIL 121
              +L LL      +L+ + WA+  + DG    I   I+ G++  L
Sbjct: 242 ---LLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRL 284


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.332    0.146    0.455 

Gapped
Lambda     K      H
   0.267   0.0737    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 4,539,092
Number of extensions: 263478
Number of successful extensions: 1352
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1258
Number of HSP's successfully gapped: 176
Length of query: 348
Length of database: 6,263,737
Length adjustment: 95
Effective length of query: 253
Effective length of database: 4,210,882
Effective search space: 1065353146
Effective search space used: 1065353146
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 58 (26.1 bits)