RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254780860|ref|YP_003065273.1| NADH dehydrogenase subunit H [Candidatus Liberibacter asiaticus str. psy62] (348 letters) >gnl|CDD|109212 pfam00146, NADHdh, NADH dehydrogenase. Length = 309 Score = 355 bits (914), Expect = 9e-99 Identities = 168/328 (51%), Positives = 225/328 (68%), Gaps = 20/328 (6%) Query: 14 FMAIKSIVFLVGLLIFIAYVLLMDRKVWAAVQLRRGPNVVGPWGLLQSFADFLKFVFKEP 73 + + ++ ++ +L+ +A++ L++RKV +Q R+GPNVVGP GLLQ FAD LK KEP Sbjct: 1 LILLNILLLIIPVLLSVAFLTLLERKVLGYMQQRKGPNVVGPLGLLQPFADGLKLFIKEP 60 Query: 74 IIPSKSNKILFLLAPLVSVILSLSAWAVVPVADGWIIADINVGILYILAISSLEIYGIII 133 ++PS S+ LF LAP++++ L+L AW V+P G + D N+G+L+ LA+SSL +YG+++ Sbjct: 61 VVPSTSSPFLFTLAPVLALTLALLAWVVLPFPYGLV--DFNLGVLFFLALSSLAVYGVLM 118 Query: 134 GGWASNSKYAFLGALRSAAQMISYEVSIGLVIVTVVLCAGSLNLTDIVYSQKSGLGTFLG 193 GWASNSKYA LGALR+ AQ ISYEVS+GL+++++++ +GS NL+DIV +Q Sbjct: 119 SGWASNSKYALLGALRAVAQTISYEVSLGLILLSIIILSGSFNLSDIVNAQ--------- 169 Query: 194 FPPSMLDWYWLALFPMFVVFFISLLAETNRPPFDLSEAESELVAGYMVEYSSTPYLLFML 253 L W L FP+F++FFIS LAETNR PFDL E ESELVAGY VEYS P+ LF L Sbjct: 170 ----ELGWNILPQFPLFLMFFISTLAETNRAPFDLPEGESELVAGYNVEYSGGPFALFFL 225 Query: 254 AEYSTIVLMCTLASILFLGGWLPPFDISLFKSIPGFFWLVFKTLGLFFMVAMVKAFVPRY 313 AEY+ I+LM L S+LFLGGWLP G W V KT LFF+ V+A PR+ Sbjct: 226 AEYANIILMSLLTSVLFLGGWLPILPP-----ELGIIWFVLKTYLLFFLFIWVRASYPRF 280 Query: 314 RYDQLMRLGWKVFLPLSFAMVLIVSFFL 341 RYDQLM LGWK FLPLS A +L + L Sbjct: 281 RYDQLMYLGWKNFLPLSLANLLFTASLL 308 >gnl|CDD|31209 COG1005, NuoH, NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]. Length = 332 Score = 332 bits (854), Expect = 6e-92 Identities = 175/341 (51%), Positives = 229/341 (67%), Gaps = 13/341 (3%) Query: 3 SFIEDFFVPLFFMAIKSIVFLVGLLIFIAYVLLMDRKVWAAVQLRRGPNVVGPWGLLQSF 62 D +PL F +K +V L+GLL+ A+++ +RK+ A VQLR GPN VGP+GLLQ Sbjct: 2 ELFSDMDIPLLFTILKIVVILIGLLVAGAFLVWFERKLAARVQLRYGPNRVGPFGLLQLL 61 Query: 63 ADFLKFVFKEPIIPSKSNKILFLLAPLVSVILSLSAWAVVPVADGWIIADINVGILYILA 122 AD +K FKE IIP ++K LF LAP++++I + A+AV+P W++A++NVG+L+ILA Sbjct: 62 ADAIKLFFKEDIIPRGADKFLFTLAPIIALIPAFLAFAVIPFGPEWVVANLNVGLLFILA 121 Query: 123 ISSLEIYGIIIGGWASNSKYAFLGALRSAAQMISYEVSIGLVIVTVVLCAGSLNLTDIVY 182 ISSL +YGII+ GWASN+KYA LGALR+AAQMISYEV +GL ++ VV+ AGSLNL DIV Sbjct: 122 ISSLGVYGIILAGWASNNKYALLGALRAAAQMISYEVPLGLSVLAVVMLAGSLNLVDIVN 181 Query: 183 SQKSGLGTFLGFPPSMLDWYWLALFPMFVVFFISLLAETNRPPFDLSEAESELVAGYMVE 242 +Q W L F+VF I++LAETNR PFDL EAESELVAGY E Sbjct: 182 AQSGL------------LWNILLQPIAFIVFLIAMLAETNRFPFDLPEAESELVAGYSTE 229 Query: 243 YSSTPYLLFMLAEYSTIVLMCTLASILFLGGWLPPFDISLFKSIPGFFWLVFKTLGLFFM 302 YS + LF L EY I+L L ++LFLGGWL PF + P F W V KT LFF Sbjct: 230 YSGIKFGLFFLGEYINIILFSALVALLFLGGWLGPFPPPGWVPGP-FVWFVLKTAFLFFF 288 Query: 303 VAMVKAFVPRYRYDQLMRLGWKVFLPLSFAMVLIVSFFLKI 343 ++A +PRYRYDQLMRLGWK+ LPL+ +++ + L + Sbjct: 289 FLWLRATLPRYRYDQLMRLGWKILLPLTLVNLVLTAALLLL 329 >gnl|CDD|177127 MTH00054, ND1, NADH dehydrogenase subunit 1; Provisional. Length = 324 Score = 317 bits (813), Expect = 4e-87 Identities = 168/325 (51%), Positives = 225/325 (69%), Gaps = 15/325 (4%) Query: 17 IKSIVFLVGLLIFIAYVLLMDRKVWAAVQLRRGPNVVGPWGLLQSFADFLKFVFKEPIIP 76 IK + LV LLI IAY+ L +RKV +Q R+GPNVVG +GLLQ AD LK KE IIP Sbjct: 6 IKILAILVPLLISIAYLTLAERKVLGYIQCRKGPNVVGVYGLLQPLADGLKLFTKEIIIP 65 Query: 77 SKSNKILFLLAPLVSVILSLSAWAVVPVADGWIIADINVGILYILAISSLEIYGIIIGGW 136 + +N ++++AP++S+ L+ AW V+P +G +++D+ +GILY+ A+SS+ +Y +++ GW Sbjct: 66 NHANIFIYIMAPILSLTLAFIAWGVIPYGEGVVLSDLGIGILYLFAVSSISVYAVLMSGW 125 Query: 137 ASNSKYAFLGALRSAAQMISYEVSIGLVIVTVVLCAGSLNLTDIVYSQKSGLGTFLGFPP 196 +SNSKYAFLGA+R+AAQMISYEVSIGL+I++VVLC GSLNLT+IV +QK+ Sbjct: 126 SSNSKYAFLGAIRAAAQMISYEVSIGLIIISVVLCVGSLNLTEIVLAQKN---------- 175 Query: 197 SMLDWYWLALFPMFVVFFISLLAETNRPPFDLSEAESELVAGYMVEYSSTPYLLFMLAEY 256 W+ LFP ++FF+S LAETNR PFDL+E ESELV+G+ VEYSS + LF LAEY Sbjct: 176 ---IWFIFPLFPAAIMFFVSALAETNRVPFDLTEGESELVSGFNVEYSSMSFALFFLAEY 232 Query: 257 STIVLMCTLASILFLGGWLPPFDISLFKSIPGFFWLVFKTLGLFFMVAMVKAFVPRYRYD 316 I+LM T ILFLGGWL + + S F W K + F+ ++A PR RYD Sbjct: 233 CHIILMSTFGVILFLGGWLVISGPTSYFS--NFVWFGIKIALIIFLFIWIRASYPRIRYD 290 Query: 317 QLMRLGWKVFLPLSFAMVLIVSFFL 341 QLM L WK +LPLS A V++VS L Sbjct: 291 QLMALLWKSYLPLSLAFVVLVSGIL 315 >gnl|CDD|164761 MTH00216, ND1, NADH dehydrogenase subunit 1; Provisional. Length = 327 Score = 314 bits (806), Expect = 3e-86 Identities = 171/333 (51%), Positives = 231/333 (69%), Gaps = 16/333 (4%) Query: 9 FVPLFFMAIKSIVFLVGLLIFIAYVLLMDRKVWAAVQLRRGPNVVGPWGLLQSFADFLKF 68 V + F IK ++ +V LLI +AY+ L +RKV +Q R+GPNVVG +GLLQ FAD +K Sbjct: 2 MVFIIFYLIKILIIIVPLLIAVAYLTLAERKVLGYMQARKGPNVVGVYGLLQPFADGVKL 61 Query: 69 VFKEPIIPSKSNKILFLLAPLVSVILSLSAWAVVPVADGWIIADINVGILYILAISSLEI 128 KE +IP +N ++++AP++S L+L W V+P G +I+D +GILYILAISS+ + Sbjct: 62 FTKEMVIPHHANLFVYIVAPVLSFTLALIVWGVIPYERGVLISDFKIGILYILAISSISV 121 Query: 129 YGIIIGGWASNSKYAFLGALRSAAQMISYEVSIGLVIVTVVLCAGSLNLTDIVYSQKSGL 188 Y I++ GW SNSKYAFLGA+R+AAQMISYEVSIGL+I++V+LC GSL++T+IV +Q +G+ Sbjct: 122 YAILMSGWGSNSKYAFLGAIRAAAQMISYEVSIGLIIISVLLCVGSLSITEIVLAQNNGI 181 Query: 189 GTFLGFPPSMLDWYWLALFPMFVVFFISLLAETNRPPFDLSEAESELVAGYMVEYSSTPY 248 W++ LFP+ ++FF S LAETNR PFDL+E ESELV+GY VEY+S + Sbjct: 182 ------------WFFFPLFPVAIMFFASALAETNRAPFDLTEGESELVSGYNVEYASMSF 229 Query: 249 LLFMLAEYSTIVLMCTLASILFLGGWLPPFDISLFKSIPGFFWLVFKTLGLFFMVAMVKA 308 LF LAEY+ I+LM L +ILFLGGWL P I FK G W K + + F+ V+A Sbjct: 230 ALFFLAEYAHIILMSCLTTILFLGGWLSP--IKYFKG--GAGWFGLKVVFIIFLFIWVRA 285 Query: 309 FVPRYRYDQLMRLGWKVFLPLSFAMVLIVSFFL 341 PR RYDQLM L WK +LPLS +V+ V+ L Sbjct: 286 SFPRIRYDQLMALLWKSYLPLSLGVVIFVASVL 318 >gnl|CDD|177173 MTH00111, ND1, NADH dehydrogenase subunit 1; Provisional. Length = 323 Score = 277 bits (710), Expect = 4e-75 Identities = 144/327 (44%), Positives = 213/327 (65%), Gaps = 24/327 (7%) Query: 11 PLFFMAIKSIVFLVGLLIFIAYVLLMDRKVWAAVQLRRGPNVVGPWGLLQSFADFLKFVF 70 L I +++++ +LI +A++ L++RK+ +QLR+GPN+VGP+GLLQ AD +K Sbjct: 3 TLLLNLINPLLYIIPILIAVAFLTLLERKILGYMQLRKGPNIVGPFGLLQPIADGVKLFI 62 Query: 71 KEPIIPSKSNKILFLLAPLVSVILSLSAWAVVPVADGWIIADINVGILYILAISSLEIYG 130 KEPI PS S+ ILF L P+++++L+L+ W +P+ +AD+N+G+L++LA+SS+ +Y Sbjct: 63 KEPIRPSTSSPILFTLTPILALLLALTIWTPLPMPFP--LADLNLGLLFLLAMSSMAVYS 120 Query: 131 IIIGGWASNSKYAFLGALRSAAQMISYEVSIGLVIVTVVLCAGSLNLTDIVYSQKSGLGT 190 I+ GWASNSKYA +GALR+ AQ ISYEV++G+++++++L +G L + +Q+ Sbjct: 121 ILWSGWASNSKYALMGALRAVAQTISYEVTLGIILLSLILLSGGYTLQTLATTQEP---L 177 Query: 191 FLGFP--PSMLDWYWLALFPMFVVFFISLLAETNRPPFDLSEAESELVAGYMVEYSSTPY 248 +L F P + WY IS LAETNR PFDL+E ESELV+G+ VEY++ P+ Sbjct: 178 WLIFSSWPLAMMWY------------ISTLAETNRAPFDLTEGESELVSGFNVEYAAGPF 225 Query: 249 LLFMLAEYSTIVLMCTLASILFLGGWLPPFDISLFKSIPGFFWLVFKTLGLFFMVAMVKA 308 LF LAEY+ I+LM TL +ILFL LF L+ KTL L ++A Sbjct: 226 ALFFLAEYANILLMNTLTTILFLNPSTLNLPPELFTIN-----LMTKTLLLTSGFLWIRA 280 Query: 309 FVPRYRYDQLMRLGWKVFLPLSFAMVL 335 PR+RYDQLM L WK FLPL+ A+ L Sbjct: 281 SYPRFRYDQLMHLLWKQFLPLTLALCL 307 >gnl|CDD|177143 MTH00071, ND1, NADH dehydrogenase subunit 1; Provisional. Length = 322 Score = 276 bits (708), Expect = 6e-75 Identities = 143/326 (43%), Positives = 212/326 (65%), Gaps = 20/326 (6%) Query: 11 PLFFMAIKSIVFLVGLLIFIAYVLLMDRKVWAAVQLRRGPNVVGPWGLLQSFADFLKFVF 70 L + I +++++ +L+ +A++ L++RKV +QLR+GPN+VGP GLLQ AD LK Sbjct: 3 TLISLIINPLLYIIPVLLAVAFLTLVERKVLGYMQLRKGPNIVGPMGLLQPIADGLKLFI 62 Query: 71 KEPIIPSKSNKILFLLAPLVSVILSLSAWAVVPVADGWIIADINVGILYILAISSLEIYG 130 KEPI PS S++ILF+L P +++ L+L W +P+ + ++++N+GIL+ILA+SSL +Y Sbjct: 63 KEPIRPSTSSQILFILMPTMALTLALIIWTPLPMPNN--LSNLNLGILFILALSSLAVYS 120 Query: 131 IIIGGWASNSKYAFLGALRSAAQMISYEVSIGLVIVTVVLCAGSLNLTDIVYSQKSGLGT 190 I+ GWASNSKYA +GALR+ AQ ISYEV++GL+++ ++L G +L + +Q+ Sbjct: 121 ILGSGWASNSKYALIGALRAVAQTISYEVTLGLILLCLILLTGGFSLMNFNTTQE----- 175 Query: 191 FLGFPPSMLDWYWLALFPMFVVFFISLLAETNRPPFDLSEAESELVAGYMVEYSSTPYLL 250 W + +PM ++FIS LAETNR PFDL+E ESELV+G+ VEY+ P+ L Sbjct: 176 --------FMWLIIPAWPMAAMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFAL 227 Query: 251 FMLAEYSTIVLMCTLASILFLGGWLPPFDISLFKSIPGFFWLVFKTLGLFFMVAMVKAFV 310 F LAEY+ I++M TL++ILFLG L L+ K L + V+A Sbjct: 228 FFLAEYANILMMNTLSTILFLGSTYNHLQPELSTMN-----LMIKASILSMLFLWVRASY 282 Query: 311 PRYRYDQLMRLGWKVFLPLSFAMVLI 336 PR+RYDQLM L WK FLP++ AM + Sbjct: 283 PRFRYDQLMHLVWKNFLPITLAMTIF 308 >gnl|CDD|177192 MTH00134, ND1, NADH dehydrogenase subunit 1; Provisional. Length = 324 Score = 276 bits (707), Expect = 9e-75 Identities = 146/321 (45%), Positives = 213/321 (66%), Gaps = 24/321 (7%) Query: 17 IKSIVFLVGLLIFIAYVLLMDRKVWAAVQLRRGPNVVGPWGLLQSFADFLKFVFKEPIIP 76 I + ++V +L+ +A++ L++RKV +QLR+GPN+VGP+GLLQ AD +K KEP+ P Sbjct: 10 INPLAYIVPVLLAVAFLTLLERKVLGYMQLRKGPNIVGPYGLLQPIADGVKLFIKEPVRP 69 Query: 77 SKSNKILFLLAPLVSVILSLSAWAVVPVADGWIIADINVGILYILAISSLEIYGIIIGGW 136 S S+ LFL P++++ L+L+ WA +P+ + + D+N+GIL+ILA+SSL +Y I+ GW Sbjct: 70 STSSPFLFLATPMLALTLALTLWAPMPMP--YPVTDLNLGILFILALSSLAVYSILGSGW 127 Query: 137 ASNSKYAFLGALRSAAQMISYEVSIGLVIVTVVLCAGSLNLTDIVYSQKSGLGTFLGFPP 196 ASNSKYA +GALR+ AQ ISYEVS+GL++++V++ G L +Q+S Sbjct: 128 ASNSKYALIGALRAVAQTISYEVSLGLILLSVIIFTGGFTLQTFNTAQES---------- 177 Query: 197 SMLDWYWLALFPMFVVFFISLLAETNRPPFDLSEAESELVAGYMVEYSSTPYLLFMLAEY 256 W L +P+ +++IS LAETNR PFDL+E ESELV+G+ VEY+ P+ LF LAEY Sbjct: 178 ---IWLLLPAWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEY 234 Query: 257 STIVLMCTLASILFLGGWLPPFDISLFKSIPGF--FWLVFKTLGLFFMVAMVKAFVPRYR 314 + I+LM TL++ILFLG S ++P L+ K L + V+A PR+R Sbjct: 235 ANILLMNTLSAILFLGA-------SHIPTLPELTTINLMTKAALLSVVFLWVRASYPRFR 287 Query: 315 YDQLMRLGWKVFLPLSFAMVL 335 YDQLM L WK FLPL+ A+V+ Sbjct: 288 YDQLMHLVWKNFLPLTLALVI 308 >gnl|CDD|177115 MTH00040, ND1, NADH dehydrogenase subunit 1; Validated. Length = 323 Score = 273 bits (699), Expect = 7e-74 Identities = 141/331 (42%), Positives = 209/331 (63%), Gaps = 19/331 (5%) Query: 13 FFMAIKSIVFLVGLLIFIAYVLLMDRKVWAAVQLRRGPNVVGPWGLLQSFADFLKFVFKE 72 I + F+V +L+ +A++ L++RKV +Q R+GPNVVGP+GLLQ FAD LK KE Sbjct: 4 ILFLINLLSFIVPVLLAVAFLTLVERKVLGYMQFRKGPNVVGPYGLLQPFADGLKLFIKE 63 Query: 73 PIIPSKSNKILFLLAPLVSVILSLSAWAVVPVADGWIIADINVGILYILAISSLEIYGII 132 + PS ++ LF +P++ + L+L W+++PV + ++N+ +L +L +SSL +Y ++ Sbjct: 64 TLKPSNASPYLFFFSPVLFLFLALLLWSLIPVPTPTL--NVNLSLLLVLGLSSLSVYALL 121 Query: 133 IGGWASNSKYAFLGALRSAAQMISYEVSIGLVIVTVVLCAGSLNLTDIVYSQKSGLGTFL 192 GWASNSKY+ LGA+R+ AQ ISYE+S+GL+++++V+ +GS +L+ I SQ Sbjct: 122 GSGWASNSKYSLLGAIRAVAQTISYEISLGLILLSLVIFSGSFSLSSISNSQNGS----- 176 Query: 193 GFPPSMLDWYWLALFPMFVVFFISLLAETNRPPFDLSEAESELVAGYMVEYSSTPYLLFM 252 W P+F ++FIS LAETNR PFDL+E ESELV+GY VEY+ P+ LF Sbjct: 177 --------WLLFPCLPLFYIWFISTLAETNRAPFDLTEGESELVSGYNVEYAGGPFALFF 228 Query: 253 LAEYSTIVLMCTLASILFLGGWLPPFDISLFKSIPGFFWLVFKTLGLFFMVAMVKAFVPR 312 +AEY+ I+ M L+ ILFLGG P +I I + KT L F+ V+A PR Sbjct: 229 IAEYANIIFMNLLSVILFLGGGSPFNEIFPINII----IVGIKTTFLVFLFLWVRASYPR 284 Query: 313 YRYDQLMRLGWKVFLPLSFAMVLIVSFFLKI 343 +RYDQLM L WK +LPLS +++ L + Sbjct: 285 FRYDQLMFLTWKNYLPLSIGLLIFYLLLLSL 315 >gnl|CDD|177108 MTH00029, ND1, NADH dehydrogenase subunit 1; Provisional. Length = 343 Score = 271 bits (693), Expect = 3e-73 Identities = 160/338 (47%), Positives = 222/338 (65%), Gaps = 24/338 (7%) Query: 15 MAIKSIVFLVGLLIFIAYVLLMDRKVWAAVQLRRGPNVVGPWGLLQSFADFLKFVFKEPI 74 + IK ++ V LL+ +AY+ L +RKV +Q R+GP +VGPWGL+Q AD +K + KE I Sbjct: 9 VTIKLLIIFVPLLLSVAYLTLAERKVLGLMQNRKGPAIVGPWGLVQPIADGVKLLTKELI 68 Query: 75 IPSKSNKILFLLAPLVSVILSLSAWAVVPVADGWIIADINVGILYILAISSLEIYGIIIG 134 IPS++NK L+ +AP++S L++ AWA+V + G ++D++VG+LY LAISSL +Y I++ Sbjct: 69 IPSQANKFLYYIAPIISFTLAILAWAIVTMDQGVFLSDLDVGVLYFLAISSLSVYAILLS 128 Query: 135 GWASNSKYAFLGALRSAAQMISYEVSIGLVIVTVVLCAGSLNLTDIVYSQKSGLGTFLGF 194 GWASNS+Y FLGA+R AAQMISYEV+IGL+I++V+LC GSLN+++IV SQ+S Sbjct: 129 GWASNSRYPFLGAIRCAAQMISYEVAIGLIIISVILCVGSLNISEIVISQRS-------- 180 Query: 195 PPSMLDWYWLALFPMFVVFFISLLAETNRPPFDLSEAESELVAGYMVEYSSTPYLLFMLA 254 W + LFP ++F ++ LAET R PFDL+E ESELV+G+ VEYSS + LF LA Sbjct: 181 -----VWLIIPLFPAAIMFMVASLAETARAPFDLTEGESELVSGFNVEYSSLSFALFFLA 235 Query: 255 EYSTIVLMCTLASILFLGGWLPPFDISL-----------FKSIPGFFWLVFKTLGLFFMV 303 EYS I+LM + +I FLGGWL P D S FW K+ Sbjct: 236 EYSNIILMSCMMTIFFLGGWLSPLDGIPTPPEAFSIFEQIASSKSSFWFFTKSSIFILFF 295 Query: 304 AMVKAFVPRYRYDQLMRLGWKVFLPLSFAMVLIVSFFL 341 +A PR RYDQLM+L WK +LPLS +V++ + L Sbjct: 296 IWSRASFPRIRYDQLMKLLWKTYLPLSLGLVILTAGIL 333 >gnl|CDD|177258 MTH00218, ND1, NADH dehydrogenase subunit 1; Provisional. Length = 311 Score = 269 bits (690), Expect = 8e-73 Identities = 150/336 (44%), Positives = 216/336 (64%), Gaps = 28/336 (8%) Query: 12 LFFMAIKSIVFLVGLLIFIAYVLLMDRKVWAAVQLRRGPNVVGPWGLLQSFADFLKFVFK 71 + I +++++ +L+ +A++ L++RKV +QLR+GPNVVGP+GLLQ AD +K K Sbjct: 1 MLLSLINLLLYILPVLLAVAFLTLLERKVLGYMQLRKGPNVVGPYGLLQPIADGVKLFIK 60 Query: 72 EPIIPSKSNKILFLLAPLVSVILSLSAWAVVPVADGWIIADINVGILYILAISSLEIYGI 131 EPI PS S+ LFLLAP++++ L+L W +P+ + ++N+G+L+ILAISSL +Y I Sbjct: 61 EPIRPSTSSPFLFLLAPILALTLALLLWMPLPLPFS--LINLNLGVLFILAISSLGVYSI 118 Query: 132 IIGGWASNSKYAFLGALRSAAQMISYEVSIGLVIVTVVLCAGSLNLTDIVYSQKSGLGTF 191 + GWASNSKYA +GALR+ AQ ISYEVS+GL+I+++++ G +L +Q++ Sbjct: 119 LWSGWASNSKYALMGALRAVAQTISYEVSLGLIILSLIILTGGFSLEGFNLTQETI---- 174 Query: 192 LGFPPSMLDWYWLALFPMFVVFFISLLAETNRPPFDLSEAESELVAGYMVEYSSTPYLLF 251 W + +P+ +++FIS LAETNR PFDL+E ESELV+G+ VEYS P+ LF Sbjct: 175 ---------WLLIPEWPLALMWFISTLAETNRAPFDLTEGESELVSGFNVEYSGGPFALF 225 Query: 252 MLAEYSTIVLMCTLASILFLGGWLPPFDISLFKSIPGFFWLVFKTLGLFFMVAMVKAFVP 311 LAEY I+ M TL+ ILFLG L L+ K L F+ V+A +P Sbjct: 226 FLAEYMNILFMNTLSVILFLGTSLT------------TINLMLKATLLVFLFLWVRASLP 273 Query: 312 RYRYDQLMRLGWKVFLPLSFA-MVLIVSFFLKIYTL 346 R+RYDQLM L WK FLPLS A ++L S L +L Sbjct: 274 RFRYDQLMHLAWKNFLPLSLALLLLHTSLPLSFASL 309 >gnl|CDD|177166 MTH00104, ND1, NADH dehydrogenase subunit 1; Provisional. Length = 318 Score = 261 bits (670), Expect = 2e-70 Identities = 136/319 (42%), Positives = 214/319 (67%), Gaps = 20/319 (6%) Query: 17 IKSIVFLVGLLIFIAYVLLMDRKVWAAVQLRRGPNVVGPWGLLQSFADFLKFVFKEPIIP 76 I ++ ++ +L+ +A++ L++RKV +QLR+GPN+VGP+GLLQ FAD +K KEP+ P Sbjct: 4 INILLLIIPILLAVAFLTLVERKVLGYMQLRKGPNIVGPYGLLQPFADAMKLFTKEPLRP 63 Query: 77 SKSNKILFLLAPLVSVILSLSAWAVVPVADGWIIADINVGILYILAISSLEIYGIIIGGW 136 S+ +F++AP++++ L+L+ W +P+ I ++N+G+L+ILA+SSL +Y I+ GW Sbjct: 64 LTSSTTMFIIAPILALTLALTMWIPLPMPYPLI--NMNLGVLFILAMSSLAVYSILWSGW 121 Query: 137 ASNSKYAFLGALRSAAQMISYEVSIGLVIVTVVLCAGSLNLTDIVYSQKSGLGTFLGFPP 196 ASNSKYA +GALR+ AQ ISYEV++ +++++V+L GS L+ ++ +Q+ Sbjct: 122 ASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMNGSFTLSTLITTQEHL--------- 172 Query: 197 SMLDWYWLALFPMFVVFFISLLAETNRPPFDLSEAESELVAGYMVEYSSTPYLLFMLAEY 256 W +P+ +++FIS LAETNR PFDL+E ESELV+G+ VEY++ P+ LF +AEY Sbjct: 173 ----WLIFPSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEY 228 Query: 257 STIVLMCTLASILFLGGWLPPFDISLFKSIPGFFWLVFKTLGLFFMVAMVKAFVPRYRYD 316 + I++M L +ILFLG + P+ L+ KTL L + ++A PR+RYD Sbjct: 229 ANIIMMNALTTILFLGAFHNPYMPELYT-----TNFTIKTLLLTILFLWIRASYPRFRYD 283 Query: 317 QLMRLGWKVFLPLSFAMVL 335 QLM L WK FLPL+ A+ + Sbjct: 284 QLMHLLWKNFLPLTLALCM 302 >gnl|CDD|39967 KOG4770, KOG4770, KOG4770, NADH dehydrogenase subunit 1 [Energy production and conversion]. Length = 315 Score = 256 bits (655), Expect = 7e-69 Identities = 154/325 (47%), Positives = 219/325 (67%), Gaps = 20/325 (6%) Query: 17 IKSIVFLVGLLIFIAYVLLMDRKVWAAVQLRRGPNVVGPWGLLQSFADFLKFVFKEPIIP 76 ++ ++ +L +A++ L++RK+ +Q R+GPN VGP GLLQ AD +K + KE + P Sbjct: 7 AMILLLIIPILQSVAFLTLLERKILGYIQNRKGPNKVGPMGLLQPLADGVKLLTKEQLTP 66 Query: 77 SKSNKILFLLAPLVSVILSLSAWAVVPVADGWIIADINVGILYILAISSLEIYGIIIGGW 136 SN++LFL+AP +S +LSL W V+P ++ +N+G+L+ LAISSL +Y I+I GW Sbjct: 67 LNSNEVLFLIAPGISFVLSLLEWFVLPFF--NVLISLNIGLLFFLAISSLAVYTILISGW 124 Query: 137 ASNSKYAFLGALRSAAQMISYEVSIGLVIVTVVLCAGSLNLTDIVYSQKSGLGTFLGFPP 196 +SNSKYAFLGALR+AAQ ISYEVS+ L+++++++ +GS NL+DI +Q + Sbjct: 125 SSNSKYAFLGALRAAAQSISYEVSLALILLSIIILSGSFNLSDIFVAQFN---------- 174 Query: 197 SMLDWYWLALFPMFVVFFISLLAETNRPPFDLSEAESELVAGYMVEYSSTPYLLFMLAEY 256 W + LFP ++FFIS LAETNR PFDL E ESELVAG+ VEYSS + LF LAEY Sbjct: 175 ---LWLLIILFPFAIMFFISSLAETNRAPFDLPEGESELVAGFNVEYSSGGFALFFLAEY 231 Query: 257 STIVLMCTLASILFLGGWLPPFDISLFKSIPGFFWLVFKTLGLFFMVAMVKAFVPRYRYD 316 + ++ M L+++LFLGGW P + LF F +FKT + F+ +++ PRYRYD Sbjct: 232 ANLIFMSVLSTVLFLGGWSPYLILELFS-----FIFIFKTFLILFLFIWIRSTYPRYRYD 286 Query: 317 QLMRLGWKVFLPLSFAMVLIVSFFL 341 QLM LGWK FLP+S AM+L + F Sbjct: 287 QLMSLGWKKFLPISLAMLLFYASFF 311 >gnl|CDD|177201 MTH00143, ND1, NADH dehydrogenase subunit 1; Provisional. Length = 307 Score = 256 bits (656), Expect = 8e-69 Identities = 130/325 (40%), Positives = 192/325 (59%), Gaps = 22/325 (6%) Query: 17 IKSIVFLVGLLIFIAYVLLMDRKVWAAVQLRRGPNVVGPWGLLQSFADFLKFVFKEPIIP 76 + S+ + +L+ +A+ L++RK Q+R+GPN VG GL Q AD +K KE + P Sbjct: 5 LSSVFTYLCVLLAVAFFTLLERKGLGYFQIRKGPNKVGLMGLPQPLADAVKLFTKEFVKP 64 Query: 77 SKSNKILFLLAPLVSVILSLSAWAVVPVADGWIIADINVGILYILAISSLEIYGIIIGGW 136 + SNK F LAP +S+IL+L W + P + + G+L+ L +SSL +YG+++ GW Sbjct: 65 TMSNKFPFFLAPCLSLILALLLWQLYPSY--FSSSYFGWGLLFFLCVSSLNVYGVLLAGW 122 Query: 137 ASNSKYAFLGALRSAAQMISYEVSIGLVIVTVVLCAGSLNLTDIVYSQKSGLGTFLGFPP 196 +SNSKYA LGA+R+ AQ ISYEVS+ L+++ + +GS + +I SQ S FL Sbjct: 123 SSNSKYALLGAVRAVAQTISYEVSMSLILLFPLFLSGSFSFIEISESQFSVWLGFL---- 178 Query: 197 SMLDWYWLALFPMFVVFFISLLAETNRPPFDLSEAESELVAGYMVEYSSTPYLLFMLAEY 256 +FP+F+++F+S LAETNR PFD +E ESELV+G+ VEY + L LAEY Sbjct: 179 ---------MFPVFLMWFVSCLAETNRAPFDFAEGESELVSGFNVEYGGGGFALLFLAEY 229 Query: 257 STIVLMCTLASILFLGGWLPPFDISLFKSIPGFFWLVFKTLGLFFMVAMVKAFVPRYRYD 316 + I+ M L +LF GG S + G +FK L F+ V+A PR+RYD Sbjct: 230 ANILFMSLLTVVLFFGG-------SSVLFLLGGVVFMFKVLFFAFLFIWVRASYPRFRYD 282 Query: 317 QLMRLGWKVFLPLSFAMVLIVSFFL 341 LM L WK FLP S +++++ + Sbjct: 283 LLMMLCWKSFLPFSLSILVLFVVLV 307 >gnl|CDD|177261 MTH00225, ND1, NADH dehydrogenase subunit 1; Provisional. Length = 305 Score = 246 bits (629), Expect = 9e-66 Identities = 145/328 (44%), Positives = 199/328 (60%), Gaps = 25/328 (7%) Query: 14 FMAIKSIVFLVGLLIFIAYVLLMDRKVWAAVQLRRGPNVVGPWGLLQSFADFLKFVFKEP 73 +K ++ L+ LL+ +A+ L++RKV +QLR+GPN VG GL Q FAD LK KE Sbjct: 2 SFLLKFLIMLICLLLSVAFYTLLERKVLGYIQLRKGPNKVGLMGLPQPFADALKLFTKEQ 61 Query: 74 IIPSKSNKILFLLAPLVSVILSLSAWAVVPVADGWIIADINVGILYILAISSLEIYGIII 133 P SNK+ + +AP++S+ILSL W++ P + I GIL+ L ISSL +Y I++ Sbjct: 62 TKPQLSNKLPYYIAPILSLILSLILWSLYPSM--FSIYSFKFGILFFLCISSLNVYTILL 119 Query: 134 GGWASNSKYAFLGALRSAAQMISYEVSIGLVIVTVVLCAGSLNLTDIVYSQKSGLGTFLG 193 GW+SNSKYA LGALR+ AQ ISYEVS+ L+++++V + NL D Y+QK Sbjct: 120 AGWSSNSKYALLGALRAVAQTISYEVSMALILLSIVFLVLTYNLFDFSYNQK-------- 171 Query: 194 FPPSMLDWYWLALFPMFVVFFISLLAETNRPPFDLSEAESELVAGYMVEYSSTPYLLFML 253 W+ LFP+F + IS+LAETNR PFD +E ESELV+G+ +EYSS + L + Sbjct: 172 -----YFWFMFVLFPLFFCWMISMLAETNRAPFDFAEGESELVSGFNIEYSSGGFALIFM 226 Query: 254 AEYSTIVLMCTLASILFLGGWLPPFDISLFKSIPGFFWLVFKTLGLFFMVAMVKAFVPRY 313 AEY +I+ M L SILF GG F +I F + K + L F V+ +PR Sbjct: 227 AEYGSILFMSMLTSILFFGG--------FFVTIDLFL--ILKIMLLAFWFIWVRGVLPRM 276 Query: 314 RYDQLMRLGWKVFLPLSFAMVLIVSFFL 341 RYD+LM L WK FLPLS A + +V L Sbjct: 277 RYDKLMSLTWKSFLPLSLAYLFMVLIIL 304 >gnl|CDD|177241 MTH00193, ND1, NADH dehydrogenase subunit 1; Provisional. Length = 306 Score = 243 bits (622), Expect = 6e-65 Identities = 139/333 (41%), Positives = 202/333 (60%), Gaps = 28/333 (8%) Query: 12 LFFMAIKSIVFLVGLLIFIAYVLLMDRKVWAAVQLRRGPNVVGPWGLLQSFADFLKFVFK 71 L M I ++ ++ +L+ +A++ L++RKV +Q+R+GPN VG G+LQ F+D +K K Sbjct: 1 LMMMLINFLLLIICVLVSVAFLTLLERKVLGYIQIRKGPNKVGFMGILQPFSDAIKLFTK 60 Query: 72 EPIIPSKSNKILFLLAPLVSVILSLSAWAVVPVADGWIIADINVGILYILAISSLEIYGI 131 E P SN +L+ +P+ S+ LSL W + P + + N+GIL+ L SSL +Y + Sbjct: 61 EQTYPLMSNYLLYYFSPVFSLFLSLLIWLIYPY--LFNLISFNLGILFFLCCSSLGVYTV 118 Query: 132 IIGGWASNSKYAFLGALRSAAQMISYEVSIGLVIVTVVLCAGSLNLTDIVYSQKSGLGTF 191 +I GW+SNSKY+ LG+LRS AQ ISYEVS+ L++++ + GS NL D + QK Sbjct: 119 MIAGWSSNSKYSLLGSLRSVAQTISYEVSLALILLSFIFLIGSFNLLDFMNYQKYI---- 174 Query: 192 LGFPPSMLDWYWLALFPMFVVFFISLLAETNRPPFDLSEAESELVAGYMVEYSSTPYLLF 251 W+ FP+F+++F+S LAETNR PFD +E ESELV+G+ VEYSS + L Sbjct: 175 ---------WFIFFSFPLFLIWFVSCLAETNRTPFDFAEGESELVSGFNVEYSSGGFALI 225 Query: 252 MLAEYSTIVLMCTLASILFLGGWLPPFDISLFKSIPGFFWLVFKTLGLFFMVAMVKAFVP 311 LAEYS+I+ M L ++FLGG L F+ K L + F+ V+ +P Sbjct: 226 FLAEYSSILFMSMLFVLMFLGGDLLSL----------LFY--LKLLFISFLFIWVRGTLP 273 Query: 312 RYRYDQLMRLGWKVFLPLSFAMVLIVSFFLKIY 344 R+RYD+LM L WK FLPLS L+ F LKI+ Sbjct: 274 RFRYDKLMYLAWKSFLPLSL-NYLLFFFGLKIF 305 >gnl|CDD|177242 MTH00195, ND1, NADH dehydrogenase subunit 1; Provisional. Length = 307 Score = 233 bits (595), Expect = 7e-62 Identities = 141/327 (43%), Positives = 198/327 (60%), Gaps = 30/327 (9%) Query: 17 IKSIVFLVGLLIFIAYVLLMDRKVWAAVQLRRGPNVVGPWGLLQSFADFLKFVFKEPIIP 76 I ++ +V +L+ +A+ L++RK+ +QLR+GPN VGP+GLLQ AD +K KEP+ P Sbjct: 6 IHFLIQIVPVLLAVAFFTLLERKILGYIQLRKGPNKVGPYGLLQPIADAVKLFIKEPVKP 65 Query: 77 SKSNKILFLLAPLVSVILSLSAWAVVPVADGWIIADINVGILYILAISSLEIYGIIIGGW 136 S S+ LF AP++++ L+L W +P G + IN+ +L+ L +SSL +Y I+ GW Sbjct: 66 STSSLWLFFFAPVLALALALILWVPIPSPFG--FSSINLSVLFFLCVSSLSVYSILGSGW 123 Query: 137 ASNSKYAFLGALRSAAQMISYEVSIGLVIVTVVLCAGSLNLTDIVYSQKSGLGTFLGFPP 196 ASNSKYA LGA+R+ AQ ISYEVS+GL+I+ + AGS + T +V SQ GF Sbjct: 124 ASNSKYALLGAIRAVAQTISYEVSMGLIILCPICLAGSFDFTIMVISQ--------GFS- 174 Query: 197 SMLDWYWLALFPMFVVFFISLLAETNRPPFDLSEAESELVAGYMVEYSSTPYLLFMLAEY 256 W L P+ ++++S LAETNR PFD +E ESELV+G+ VEY+ P+ L +AEY Sbjct: 175 ----WVILLCPPISFMWYVSTLAETNRAPFDFAEGESELVSGFNVEYAGGPFALIFMAEY 230 Query: 257 STIVLMCTLASILFLGGWLPPFDISLFKSIPGFFWLVFKTLGLFFMVAMVKAFVPRYRYD 316 S I+ M L +ILFLGG G + K+L L F V+ +PR+RYD Sbjct: 231 SNIIFMSVLTTILFLGG-------------GGTIIVALKSLFLSFCFLWVRGSLPRFRYD 277 Query: 317 QLMRLGWKVFLP--LSFAMVLIVSFFL 341 QLM L WK +LP LS + L F Sbjct: 278 QLMHLTWKCYLPLILSLLIPLAAIPFA 304 >gnl|CDD|164586 MTH00010, ND1, NADH dehydrogenase subunit 1; Validated. Length = 311 Score = 215 bits (549), Expect = 2e-56 Identities = 131/333 (39%), Positives = 191/333 (57%), Gaps = 26/333 (7%) Query: 13 FFMAIKSIVFLVGLLIFIAYVLLMDRKVWAAVQLRRGPNVVGPWGLLQSFADFLKFVFKE 72 FF++I ++ V L+ +A+ L++RK QLR+GPN VG G+ Q FAD +K KE Sbjct: 5 FFISI--LLSYVMALLAMAFYTLLERKALGYFQLRKGPNKVGLAGIPQPFADAIKLFTKE 62 Query: 73 PIIPSKSNKILFLLAPLVSVILSLSAWAVVPVADGWIIADINVGILYILAISSLEIYGII 132 PS +N FL AP++S+IL+L W++ P + IL L +SS+ +Y + Sbjct: 63 QTKPSPANITPFLGAPMMSLILALLLWSLYPHKHPSFF--LKFSILLFLCVSSMNVYTTL 120 Query: 133 IGGWASNSKYAFLGALRSAAQMISYEVSIGLVIVTVVLCAGSLNLTDIVYSQKSGLGTFL 192 GW SNSKYA LGALRS AQ ISYEVS+ L++++ +L + + + I+ SQ S Sbjct: 121 GAGWTSNSKYALLGALRSVAQTISYEVSMSLILLSALLILQTFSFSKIIMSQYS------ 174 Query: 193 GFPPSMLDWYWLALFPMFVVFFISLLAETNRPPFDLSEAESELVAGYMVEYSSTPYLLFM 252 W L + P+ V +FI+ LAETNR PFD +E ESELV+G+ VEYSS + L Sbjct: 175 --------WILLMIIPLTVSWFITNLAETNRTPFDFAEGESELVSGFNVEYSSGLFALIF 226 Query: 253 LAEYSTIVLMCTLASILFLGGWLPPFDISLFKSIPGFFWLVFKTLGLFFMVAMVKAFVPR 312 +AEY+ I++M S+ F ++P IS L+ KT+ L F+ ++A PR Sbjct: 227 MAEYANILIMSLFTSVFFT-SFIPSIFISD-------LMLILKTVFLAFLFIWIRATFPR 278 Query: 313 YRYDQLMRLGWKVFLPLSFAMVLIVSFFLKIYT 345 RYD+LM L WK FLP+S ++I + + Sbjct: 279 MRYDRLMNLTWKSFLPMSLTSLMISIPIMFLLL 311 >gnl|CDD|176973 CHL00032, ndhA, NADH dehydrogenase subunit 1. Length = 363 Score = 210 bits (536), Expect = 6e-55 Identities = 126/344 (36%), Positives = 201/344 (58%), Gaps = 26/344 (7%) Query: 12 LFFMAIKSIVFLVGLLIFIAYVLLMDRKVWAAVQLRRGPNVVGPWGLLQSFADFLKFVFK 71 L ++ + + ++G+ I + ++ ++R++ A +Q R GP GP G+LQ+ AD K +FK Sbjct: 26 LIWILVPILTLVLGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGTKLLFK 85 Query: 72 EPIIPSKSNKILFLLAPLVSVILSLSAWAVVPVADGWIIADINVGILYILAISSLEIYGI 131 E ++PS+ + LF + P ++VI L ++ V+P ++AD+++G+ +AISS+ G+ Sbjct: 86 EDLLPSRGDIRLFSIGPSIAVISILLSYLVIPFGYHLVLADLSIGVFLWIAISSIAPIGL 145 Query: 132 IIGGWASNSKYAFLGALRSAAQMISYEVSIGLVIVTVVLCAGSLNLTDIVYSQKSGLGTF 191 ++ G+ SN+KY+FLG LR+AAQ ISYE+ + L ++++ L + SL+ DIV +Q Sbjct: 146 LMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLLSNSLSTVDIVEAQSK----- 200 Query: 192 LGFPPSMLDWYW-LALFPM-FVVFFISLLAETNRPPFDLSEAESELVAGYMVEYSSTPYL 249 GF W W L P+ F+VF IS LAE R PFDL EAE ELVAGY EYS + Sbjct: 201 YGF------WGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFG 254 Query: 250 LFMLAEYSTIVLMCTLASILFLGGW---------LPPFDIS----LFKSIPGFFWLVFKT 296 LF +A Y +++ ++L+LGGW F+I+ +F + G F + KT Sbjct: 255 LFYVASYLNLLVSSLFVTVLYLGGWNLSIPYIFIPELFEINKTGGVFGTTIGIFITLAKT 314 Query: 297 LGLFFMVAMVKAFVPRYRYDQLMRLGWKVFLPLSFAMVLIVSFF 340 F+ + +PR R DQL+ LGWK LP+S +L+ + F Sbjct: 315 YLFLFISITTRWTLPRLRMDQLLNLGWKFLLPISLGNLLLTTSF 358 >gnl|CDD|177153 MTH00090, ND1, NADH dehydrogenase subunit 1; Provisional. Length = 284 Score = 150 bits (382), Expect = 4e-37 Identities = 101/322 (31%), Positives = 166/322 (51%), Gaps = 41/322 (12%) Query: 20 IVFLVGLLIFIAYVLLMDRKVWAAVQLRRGPNVVGPWGLLQSFADFLKFVFKEPIIPSKS 79 ++ ++ +L IA++ L +R + + Q R GPN V G+LQ+ D +K + KE ++P S Sbjct: 3 LLMMIFILQAIAFITLYERHLLGSSQNRLGPNKVSFMGVLQALLDGVKLLKKEQMLPLNS 62 Query: 80 NKILFLLAPLVSVILSLSAWAVVPVADGWIIADINVGILYILAISSLEIYGIIIGGWASN 139 + + FLL P VS ++ W V+P ++ +L+ L + +Y +I G S Sbjct: 63 SDLSFLLVPGVSFVVMYLEWFVLPYFFDFL--SFEYSLLFFLCLIGFSVYTTLISGIVSK 120 Query: 140 SKYAFLGALRSAAQMISYEVSIGLVIVTVVLCAGSLNLTDIVYSQKSGLGTFLGFPPSML 199 SKY FLGALR+++Q ISYE++ L +++++L S + Sbjct: 121 SKYGFLGALRASSQSISYEIAFSLYLLSIMLHNNSFSFVSS------------------- 161 Query: 200 DWYWLALFPMFVVFFISLLAETNRPPFDLSEAESELVAGYMVEYSSTPYLLFMLAEYSTI 259 + L+LF +++ F I ++AE NR PFD SE ESELV+GY VEYSS ++L L+EY ++ Sbjct: 162 --FSLSLFVIYLPFLIMIIAELNRAPFDFSEGESELVSGYNVEYSSVAFVLLFLSEYGSL 219 Query: 260 VLMCTLASILFLGGWLPPFDISLFKSIPGFFWLVFKTLGLFFMVAMVKAFVPRYRYDQLM 319 + L S+LF F S + +F ++ +++ PR+RYD +M Sbjct: 220 IFFSVLTSVLF-------FKFSF------LMLFL-----IFSLLIFIRSSYPRFRYDMMM 261 Query: 320 RLGWKVFLPLSFAMVLIVSFFL 341 + W FLPLS + Sbjct: 262 SMFWFKFLPLSLIFLGFFVVLF 283 >gnl|CDD|177130 MTH00058, ND1, NADH dehydrogenase subunit 1; Provisional. Length = 293 Score = 149 bits (378), Expect = 1e-36 Identities = 101/326 (30%), Positives = 161/326 (49%), Gaps = 35/326 (10%) Query: 13 FFMAIKSIVFLVGLLIFIAYVLLMDRKVWAAVQLRRGPNVVGPWGLLQSFADFLKFVFKE 72 F + + L+ +L+ +A+ +L +RK+ +QLR+GPN VG GLLQSFAD LK V K Sbjct: 1 IFGLVSGLEGLLIILLLVAFFILGERKILGYIQLRKGPNKVGIVGLLQSFADLLKLVVKF 60 Query: 73 PIIPSKSNKILFLLAPLVSVILSLSAWAVVPVADGWIIADINVGILYILAISSLEIYGII 132 + +S L + V+L + + + ++ +L+ L ++S Y ++ Sbjct: 61 KVYGFQSRSWFSLFGVFLLVLLVVFYCFIYGSYYSGSYS--SLSLLWFLVVTSFSSYSLL 118 Query: 133 IGGWASNSKYAFLGALRSAAQMISYEVSIGLVIVTVVLCAGSLNLTDIVYSQKSGLGTFL 192 GW S +KY+ L ++RSA +S+E +++ LC GS +L D YS Sbjct: 119 CVGWGSYNKYSLLSSIRSAFGSVSFEACFMCIVIFCGLCYGSYSLVDFYYS--------- 169 Query: 193 GFPPSMLDWYWLALFP-MFVVFFISLLAETNRPPFDLSEAESELVAGYMVEYSSTPYLLF 251 W + LFP +++++ + +L ETNR PFD E+ESELV+G+ EYS + Sbjct: 170 -------GWLSVLLFPLIYILWLVCILCETNRTPFDYGESESELVSGFNTEYSGIYFTCL 222 Query: 252 MLAEYSTIVLMCTLASILFLGGWLPPFDISLFKSIPGFFWLVFKTLGLFFMVAMVKAFVP 311 EY I + L S+LF GG GF ++ LFFM A +A +P Sbjct: 223 FACEYLIIFIFSWLGSVLFFGG--------------GFVSIMLLFHLLFFMWA--RATLP 266 Query: 312 RYRYDQLMRLGWKVFLPLSFAMVLIV 337 R RYD + W+ L L + ++ Sbjct: 267 RVRYDYFVNFFWEYCLVLLILSLFVI 292 >gnl|CDD|30995 COG0650, HyfC, Formate hydrogenlyase subunit 4 [Energy production and conversion]. Length = 309 Score = 102 bits (256), Expect = 1e-22 Identities = 88/329 (26%), Positives = 149/329 (45%), Gaps = 27/329 (8%) Query: 17 IKSIVFLVGLLIFIAYVLL-------MDRKVWAAVQLRRGPNVVGPWGLLQSFADFLKFV 69 + ++ ++G L+ + L + RKV A +Q R GP +LQ + D LK + Sbjct: 1 MLMLMSVIGALLQLIIAFLVAPLLSGITRKVRARIQRRIGP------PILQPYYDTLKLL 54 Query: 70 FKEPIIPSKSNKILFLLAPLVSVILSLSAWAVVPVADGWIIADINVGILYILAISSLEIY 129 KE +IP+ S+ LF LAP +++ L ++P+ ++ +L + L + Sbjct: 55 GKETVIPA-SSGWLFRLAPYLALGTLLLLALIIPL-VFVGPLAPLGDLIVLLYLLELARF 112 Query: 130 GIIIGGWASNSKYAFLGALRSAAQMISYEVSIGLVIVTVVLCAGSLNLTDIVYSQKSGLG 189 + + G +S S + +GA R + E + LV+ + L AGS N++DIV Q Sbjct: 113 FLALAGLSSGSPFGGIGASRELTLIALVEPPLLLVLFALALVAGSTNISDIVAYQAHHGP 172 Query: 190 TFLGFPPSMLDWYWLALFPMFVVFFISLLAETNRPPFDLSEAESELVAGYMVEYSSTPYL 249 L L + FFI L ET + PFD++EAE+E++ G + EYS Sbjct: 173 LLFS----------LPLVLAAIAFFILLFIETGKLPFDIAEAETEIIEGPLTEYSGKLLA 222 Query: 250 LFMLAEYSTIVLMCTLASILFLGGWLPPFDISLFKSIPGFFWLVFKTLGLFFMVAMVKAF 309 L AE ++ +L +FLG W I + + K L L + A+ +A Sbjct: 223 LLKWAEAIKQFVLLSLFVNVFLGPWGLIETII--AGLTALVVTLLKALVLTVLAALFEAT 280 Query: 310 VPRYRYDQLMRLGWKVFLPLSFAMVLIVS 338 + R R Q+++ W F + A L++ Sbjct: 281 LARLRLFQVVKFLWTAFFLAALAFALLLL 309 >gnl|CDD|38880 KOG3676, KOG3676, KOG3676, Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism, Signal transduction mechanisms]. Length = 782 Score = 34.1 bits (78), Expect = 0.064 Identities = 31/151 (20%), Positives = 52/151 (34%), Gaps = 11/151 (7%) Query: 202 YWLALFPMFVVFFISL-LAETNRPPFDLSEAESELVAGYMVEYSSTPYLLFMLAEYSTIV 260 + +++++ I LA RP + ++ E Y+ +Y L I+ Sbjct: 395 QFFMSLLIYLLYMICFTLAFYYRPALEQAKLLDE---AYINDYDELRLAGETLTLLGGIL 451 Query: 261 LMCTLASILFLGGWLPPFDISLFKSIPGFFWLVFKTLGLFFMVAMVKAFVPRYRYDQLMR 320 + +FL G P P F L F + +V+ V L+ Sbjct: 452 FLFCELPDIFLQGL--PAYNGQLIDGPLFHVLGF-LQAVLVLVSPVLRLGAIKWELALLV 508 Query: 321 ----LGWKVFLPLSFAMVLIVSFFLKIYTLI 347 LGWK L + L F + IY +I Sbjct: 509 FALVLGWKNLLYFTRGFQLTGPFVIMIYKMI 539 >gnl|CDD|31977 COG1792, MreC, Cell shape-determining protein [Cell envelope biogenesis, outer membrane]. Length = 284 Score = 29.9 bits (67), Expect = 0.98 Identities = 12/64 (18%), Positives = 31/64 (48%), Gaps = 2/64 (3%) Query: 11 PLFFMAIKSIVFLVGLLIFIAYVLLMDRKVWAAVQLRRGPN-VVGP-WGLLQSFADFLKF 68 P+F + +FLV +++ + +L D + + +R+ V+ P ++ + +F+ Sbjct: 1 PIFSLNKLLKIFLVLIILLLLLLLFADSRGQVSSIIRQVVGTVLSPVQSVVAAPFEFVDG 60 Query: 69 VFKE 72 V + Sbjct: 61 VLEF 64 >gnl|CDD|173749 cd07855, STKc_ERK5, Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5. Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the MAP2K MEK5, which in turn is regulated by the MAP3Ks MEKK2 and MEKK3. Activated ERK5 phosphorylates its targets including myocyte enhancer factor 2 (MEF2), Sap1a, c-Myc, and RSK. It plays a role in EGF-induced cell proliferation during the G1/S phase transition. Studies on knockout mice revealed that ERK5 is essential for cardiovascular development and plays an important role in angiogenesis. It is also critical for neural differentiation and survival. The ERK5 pathway has been implicated in the pathogenesis of many diseases including cancer, cardiac hypertrophy, and atherosclerosis. Length = 334 Score = 29.2 bits (66), Expect = 1.7 Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 5/43 (11%) Query: 232 ESELVAGYMVEYSST-----PYLLFMLAEYSTIVLMCTLASIL 269 +M EY +T P LL L EY+T + M ++ I Sbjct: 160 SPTEHKYFMTEYVATRWYRAPELLLSLPEYTTAIDMWSVGCIF 202 >gnl|CDD|112412 pfam03594, BenE, Benzoate membrane transport protein. Length = 378 Score = 29.2 bits (66), Expect = 1.7 Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 3/43 (6%) Query: 271 LGGWLPPFDISLFKSIPGFFWLVFKTLGLFFMVAMVKAFVPRY 313 L G L PF + F ++P LV L + + + F PRY Sbjct: 126 LAGILLPFGLKAFAALPQQPLLVLPMLLSYL---LARRFAPRY 165 >gnl|CDD|35388 KOG0166, KOG0166, KOG0166, Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]. Length = 514 Score = 27.6 bits (61), Expect = 4.7 Identities = 25/106 (23%), Positives = 43/106 (40%), Gaps = 20/106 (18%) Query: 20 IVFLVGLLIFIAYVLLMDRKV-WAAVQLRRGPNVVGPWGLLQSFADFLKFVFKEPIIPSK 78 + + L+ + L M R W L RG N P+ ++ PI+P+ Sbjct: 195 ALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVA------------PILPA- 241 Query: 79 SNKILFLLAPLVSVILSLSAWAVVPVADGW---IIADINVGILYIL 121 +L LL +L+ + WA+ + DG I I+ G++ L Sbjct: 242 ---LLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRL 284 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.332 0.146 0.455 Gapped Lambda K H 0.267 0.0737 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 4,539,092 Number of extensions: 263478 Number of successful extensions: 1352 Number of sequences better than 10.0: 1 Number of HSP's gapped: 1258 Number of HSP's successfully gapped: 176 Length of query: 348 Length of database: 6,263,737 Length adjustment: 95 Effective length of query: 253 Effective length of database: 4,210,882 Effective search space: 1065353146 Effective search space used: 1065353146 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 58 (26.1 bits)