HHsearch alignment for GI: 254780861 and conserved domain: COG2878

>COG2878 Predicted NADH:ubiquinone oxidoreductase, subunit RnfB [Energy production and conversion].

Probab=98.80  E-value=7.2e-10  Score=80.29  Aligned_cols=58  Identities=33%  Similarity=0.637  Sum_probs=45.1

Q ss_pred             CCCCCEECCCCHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEHHHCCCCCCCHHHCCCCEEECCCCCCC
Q ss_conf             87422134522325330883210122454473357788850555586887233378310303677356
Q gi|254780861|r   59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEF  126 (163)
Q Consensus        59 ~~ekCi~C~~C~~~CP~~aI~i~~~~~~~~~~~~~~~~~id~~~Ci~Cg~Cv~vCP~~AI~~~~~~e~  126 (163)
T Consensus       113 ~e~~ciGCtkCiqaCpvdAivg~~~~--------mh--tv~~dlCTGC~lCva~CPtdci~m~~~~~~  170 (198)
T COG2878         113 DEANCIGCTKCIQACPVDAIVGATKA--------MH--TVIADLCTGCDLCVAPCPTDCIEMQPVAET  170 (198)
T ss_pred             CCHHCCCCHHHHHHCCHHHHHCCCHH--------HH--HHHHHHHCCCCCCCCCCCCCCEEEEECCCC
T ss_conf             12201443989984971443125325--------78--989988467776658798770245215541