HHsearch alignment for GI: 254780861 and conserved domain: PRK05888

>PRK05888 NADH dehydrogenase subunit I; Provisional.
Probab=100.00  E-value=0  Score=330.99  Aligned_cols=157  Identities=62%  Similarity=1.111  Sum_probs=145.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHCCCEEEEEECCCCCCCEECCCCHHHHHHCCCCCCCC
Q ss_conf             89999999999999999999998406985225787577568000572378740588742213452232533088321012
Q gi|254780861|r    4 FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESG   83 (163)
Q Consensus         4 ~~~~~~~~~~~~~~~gl~~t~k~~~~~~~T~~YP~e~~~~~~rfRG~~~l~~~~~~~ekCi~C~~C~~~CP~~aI~i~~~   83 (163)
T Consensus         3 ~~~~~~~--~~~~~~Gl~vt~k~~f~k~vT~qYP~ek~~~~~r~RG~~~l~~d~~g~ekCi~C~lC~~~CP~~~I~i~~~   80 (172)
T PRK05888          3 VKEALVG--FKKSLKGLWVTLKYFFKKKVTIQYPEEKLPLSPRFRGRHALRRYPNGEERCIACKLCEAICPANAITIEAA   80 (172)
T ss_pred             HHHHHHH--HHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCCCCEEEEEECCCCCEECCCCCCHHHHCCCCCCEEEEE
T ss_conf             8999998--99999669999999759972400988647678552342776406888740357765565588776789875


Q ss_pred             CCCCCCCEEEEEEEEEHHHCCCCCCCHHHCCCCEEECCCCCCCCCCCHHHHCCCHHHHHHH-------------HHHHHH
Q ss_conf             2454473357788850555586887233378310303677356757687733299999884-------------899999
Q gi|254780861|r   84 PRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNN-------------GDRWES  150 (163)
Q Consensus        84 ~~~~~~~~~~~~~~id~~~Ci~Cg~Cv~vCP~~AI~~~~~~e~a~~~r~~l~~~k~~Ll~~-------------g~~~~~  150 (163)
T Consensus        81 ~~-~~g~k~~~~~~Id~~rCifCGlCve~CP~~AI~~t~~~E~a~~~R~~liy~k~~Ll~~~~~~~~~~~~~~~g~~~~~  159 (172)
T PRK05888         81 ER-EDGRRRTTRYDINFGRCIFCGFCEEACPTDAIVETPDFELAEETREDLIYTKEKLLANYRVAGLAILPKGKGDRYEE  159 (172)
T ss_pred             CC-CCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCHHHHHCCCCCCCCCCCCCCCCCHHHH
T ss_conf             08-99857745777534605788882210888724478863247688889366999972230003455554567635889


Q ss_pred             HHHHHHHHCCCCC
Q ss_conf             9985077455789
Q gi|254780861|r  151 EIVRNIVTDSPYR  163 (163)
Q Consensus       151 ~~~~~~~~d~~~r  163 (163)
T Consensus       160 ~~~~~~~~~~~~~  172 (172)
T PRK05888        160 EIAIDRAADLPYR  172 (172)
T ss_pred             HHHHHHHCCCCCC
T ss_conf             9887552033579