HHsearch alignment for GI: 254780861 and conserved domain: TIGR00403
>TIGR00403 ndhI NADH-plastoquinone oxidoreductase, I subunit; InterPro: IPR004497 NADH-plastoquinone oxidoreductase subunit I (1.6.5.3 from EC) catalyses the conversion of plastoquinone and NADH to plastoquinol and NAD(+). The enzyme binds two 4FE-4S clusters at iron-sulphur centres which are similar to those of the bacterial-type 4FE-4S ferredoxins.; GO: 0008137 NADH dehydrogenase (ubiquinone) activity, 0006118 electron transport.
Probab=99.95 E-value=3.2e-30 Score=204.94 Aligned_cols=125 Identities=30% Similarity=0.597 Sum_probs=113.8
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHCCCEEEEEECCCCCCCEECCCCHHHHHHCCCCCCCCCCCCCCCE
Q ss_conf 99999999999999840698522578757756800057237874058874221345223253308832101224544733
Q gi|254780861|r 12 FLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91 (163)
Q Consensus 12 ~~~~~~~gl~~t~k~~~~~~~T~~YP~e~~~~~~rfRG~~~l~~~~~~~ekCi~C~~C~~~CP~~aI~i~~~~~~~~~~~ 91 (163)
T Consensus 19 aa~yiGq~~~~tl~h~~r~P~t~~yPyek~i~serfrGrihfe-----fdkCiaCevCvrvCPi~lP~vdW~~~k~~k~k 93 (187)
T TIGR00403 19 AARYIGQGLLVTLDHMNRLPITIQYPYEKLIPSERFRGRIHFE-----FDKCIACEVCVRVCPINLPVVDWEFEKAIKKK 93 (187)
T ss_pred HHHHHCCEEEEEEECCCCCCEEEECCCHHCCCCCCCCCEEEEE-----ECCEEEEEEEEEEECCCCCEECHHHHHHHHHH
T ss_conf 8775122025664212477526756700134431001105653-----13334423456762143631204555467776
Q ss_pred EEEEEEEEHHHCCCCCCCHHHCCCCEEECCCCCCCCCCCHHHHCCCHHHH
Q ss_conf 57788850555586887233378310303677356757687733299999
Q gi|254780861|r 92 RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERL 141 (163)
Q Consensus 92 ~~~~~~id~~~Ci~Cg~Cv~vCP~~AI~~~~~~e~a~~~r~~l~~~k~~L 141 (163)
T Consensus 94 ~l~~ysidfGvCifCGnCveyCPtnClsmteeyel~~y~rh~lny~~~al 143 (187)
T TIGR00403 94 QLKNYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELSTYDRHELNYDQIAL 143 (187)
T ss_pred HHHHHHHHCCEEEEECCCCCCCCCCCCCCCHHHHHHHCCHHCCCHHHHHH
T ss_conf 77530000004676447210057530000000111000000023122022