HHsearch alignment for GI: 254780861 and conserved domain: TIGR01945

>TIGR01945 rnfC electron transport complex, RnfABCDGE type, C subunit; InterPro: IPR010208 The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation . A closely related complex in Escherichia coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized . This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase (IPR003667 from INTERPRO), but is distinct. This entry describes the C subunit.; GO: 0051539 4 iron 4 sulfur cluster binding, 0006118 electron transport, 0016020 membrane.
Probab=92.71  E-value=0.034  Score=33.24  Aligned_cols=16  Identities=44%  Similarity=1.223  Sum_probs=14.8

Q ss_pred             HHCCCCCCCHHHCCCC
Q ss_conf             5558688723337831
Q gi|254780861|r  101 IKCIYCGLCQEACPVD  116 (163)
Q Consensus       101 ~~Ci~Cg~Cv~vCP~~  116 (163)
T Consensus       372 ~~CIRCg~Cv~~CPm~  387 (444)
T TIGR01945       372 KPCIRCGKCVNVCPMG  387 (444)
T ss_pred             CCCCCHHCCCCCCCCC
T ss_conf             7884400101556744