HHsearch alignment for GI: 254780861 and conserved domain: TIGR02494
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family; InterPro: IPR012839 This subset of the radical-SAM domain includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centred radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4 from EC, IPR012838 from INTERPRO) and the anaerobic ribonucleotide reductase activating enzyme (IPR012837 from INTERPRO). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in Escherichia coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterisation and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain, which follows a conserved group of three cysteines and contains a variable pattern of 0 to 8 additional cysteines..
Probab=98.71 E-value=4.3e-09 Score=75.51 Aligned_cols=71 Identities=32% Similarity=0.592 Sum_probs=49.0
Q ss_pred CCHHCCCEEEEEECCCCCCCEECCCCHHHHHHC----CCCCCCCCCCCCCCEEEEEEEEEHHHCCCCCCCHHHCCCCEEE
Q ss_conf 800057237874058874221345223253308----8321012245447335778885055558688723337831030
Q gi|254780861|r 44 SPRFRGEHALRRYPNGEERCIACKLCEAICPAQ----AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 (163)
Q Consensus 44 ~~rfRG~~~l~~~~~~~ekCi~C~~C~~~CP~~----aI~i~~~~~~~~~~~~~~~~~id~~~Ci~Cg~Cv~vCP~~AI~ 119 (163)
T Consensus 34 PEsq~~~~~~~f~---~~~C~~C~~C~~~C~~~IHTkta~~~~~---~~~~~---~~~~~~~~c~~Cg~C~~~Cp~~Al~ 104 (305)
T TIGR02494 34 PESQRKSPELLFK---ENRCLGCGKCVEVCPAGIHTKTARLVER---LDGRN---IISIRREKCTGCGKCTEACPSGALE 104 (305)
T ss_pred CCCCCCCCCEEEE---CCCCCCCCHHHHHCCCCCCCCHHHHHHH---HCCCC---CEEECCCCCCCCCCHHHCCCCHHHH
T ss_conf 8776765102420---0234430014543245423320677876---41786---0100001774111011038400642
Q ss_pred CCCC
Q ss_conf 3677
Q gi|254780861|r 120 EGPN 123 (163)
Q Consensus 120 ~~~~ 123 (163)
T Consensus 105 ~~G~ 108 (305)
T TIGR02494 105 IVGK 108 (305)
T ss_pred EECC
T ss_conf 0245