HHsearch alignment for GI: 254780861 and conserved domain: TIGR03287
>TIGR03287 methan_mark_16 putative methanogenesis marker 16 metalloprotein. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. This protein is a predicted to bind FeS clusters, based on the presence of two copies of the Fer4 domain (pfam00037), with each copy having four Cys residues invariant across all members.
Probab=98.14 E-value=9.4e-07 Score=61.19 Aligned_cols=49 Identities=41% Similarity=0.912 Sum_probs=39.5
Q ss_pred CCCCCEECCCC--HHHHHHCCCCCCCCCCCCCCCEEEEEEEEEHHHCCCCCCCHHHCCCCEEECC
Q ss_conf 87422134522--3253308832101224544733577888505555868872333783103036
Q gi|254780861|r 59 GEERCIACKLC--EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 (163)
Q Consensus 59 ~~ekCi~C~~C--~~~CP~~aI~i~~~~~~~~~~~~~~~~~id~~~Ci~Cg~Cv~vCP~~AI~~~ 121 (163)
T Consensus 300 ~p~~C~~C~~C~~~~~CP~~ai~~-------~~-------~~~~~~Cf~CG~C~~~C~~~~~~~~ 350 (391)
T TIGR03287 300 NPERCENCDPCLVEEACPVPAIKK-------DG-------TLNTEDCFGCGYCAEICPGGAFEVN 350 (391)
T ss_pred CCCCCCCCCCHHHHHCCCCCCCCC-------CC-------CCCHHHCCCCCCHHCCCCCCCEEEE
T ss_conf 710045574003544088420146-------77-------3562222576500000677625640