HHsearch alignment for GI: 254780861 and conserved domain: TIGR03294
>TIGR03294 FrhG coenzyme F420 hydrogenase, subunit gamma. This model represents that clade of F420-dependent hydrogenases (FRH) beta subunits found exclusively and universally in methanogenic archaea. This protein contains two 4Fe-4S cluster binding domains (pfam00037) and scores above the trusted cutoff to model pfam01058 for the "NADH ubiquinone oxidoreductase, 20 Kd subunit" family.
Probab=98.82 E-value=1.1e-09 Score=79.26 Aligned_cols=48 Identities=35% Similarity=0.915 Sum_probs=40.6
Q ss_pred CCCCCEECCCCHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEHHHCCCCCCCHHHCCCCE
Q ss_conf 87422134522325330883210122454473357788850555586887233378310
Q gi|254780861|r 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 (163)
Q Consensus 59 ~~ekCi~C~~C~~~CP~~aI~i~~~~~~~~~~~~~~~~~id~~~Ci~Cg~Cv~vCP~~A 117 (163)
T Consensus 172 n~~LC~GCg~Ca~~Cp~~AI~~~~gkp-----------~i~~~~Ci~CG~C~~~CPr~~ 219 (228)
T TIGR03294 172 NQGLCMGCGTCAAACPTRAIEMEDGRP-----------NVNRDRCIKCGACYVQCPRAF 219 (228)
T ss_pred CCCCCCCCHHHHHHCCCCCCEEECCCE-----------EECHHHCCCCCCCCCCCCCCC
T ss_conf 632167815778548857625653836-----------776322776774412197642