Query gi|254780861|ref|YP_003065274.1| NADH dehydrogenase subunit I [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 163
No_of_seqs 151 out of 3071
Neff 5.9
Searched_HMMs 39220
Date Sun May 29 23:52:14 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780861.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK05888 NADH dehydrogenase su 100.0 0 0 331.0 12.6 157 4-163 3-172 (172)
2 KOG3256 consensus 100.0 0 0 318.1 6.4 159 4-163 54-212 (212)
3 TIGR01971 NuoI NADH-quinone ox 100.0 0 0 320.2 2.3 122 19-141 1-129 (129)
4 COG1143 NuoI Formate hydrogenl 100.0 0 0 301.3 7.2 154 1-160 1-158 (172)
5 CHL00014 ndhI NADH dehydrogena 100.0 5.6E-45 0 295.2 9.0 132 3-141 11-142 (173)
6 PRK08348 NADH-plastoquinone ox 100.0 3.4E-34 8.7E-39 229.3 5.1 106 17-136 2-108 (111)
7 PRK08222 hydrogenase 4 subunit 100.0 1.5E-34 3.8E-39 231.5 0.9 106 22-137 3-109 (181)
8 PRK12387 formate hydrogenlyase 100.0 1E-33 2.6E-38 226.4 4.5 108 20-137 2-109 (178)
9 TIGR00403 ndhI NADH-plastoquin 100.0 3.2E-30 8.2E-35 204.9 -1.4 125 12-141 19-143 (187)
10 PRK13984 putative oxidoreducta 99.9 4.6E-27 1.2E-31 185.6 1.9 121 14-140 4-125 (604)
11 PRK09623 vorD 2-ketoisovalerat 99.7 7.3E-18 1.9E-22 129.2 2.9 97 11-123 4-103 (105)
12 PRK09624 porD pyuvate ferredox 99.4 1.2E-13 3E-18 103.4 4.3 65 44-123 38-103 (105)
13 PRK09626 oorD 2-oxoglutarate-a 99.4 1.9E-13 4.9E-18 102.2 2.7 69 59-130 14-84 (103)
14 TIGR01944 rnfB electron transp 99.3 1.3E-13 3.2E-18 103.3 0.5 58 59-126 123-180 (213)
15 PRK06991 ferredoxin; Provision 99.3 1.7E-12 4.3E-17 96.4 5.2 56 59-124 83-138 (274)
16 PRK12769 putative oxidoreducta 99.3 3.1E-13 7.8E-18 100.9 0.6 64 59-128 83-152 (654)
17 PRK12809 putative oxidoreducta 99.3 3.5E-13 8.9E-18 100.6 0.2 60 59-126 83-142 (639)
18 PRK05113 electron transport co 99.3 1.7E-12 4.4E-17 96.3 2.5 57 59-125 111-167 (184)
19 TIGR02176 pyruv_ox_red pyruvat 99.3 1.1E-12 2.7E-17 97.6 1.1 80 60-143 698-801 (1194)
20 TIGR02179 PorD_KorD 2-oxoacid: 99.2 2.5E-12 6.3E-17 95.4 1.1 58 59-123 23-83 (84)
21 COG3383 Uncharacterized anaero 99.2 4.1E-12 1E-16 94.0 1.5 83 33-121 123-212 (978)
22 TIGR03048 PS_I_psaC photosyste 99.2 3.4E-12 8.6E-17 94.5 1.0 57 61-120 8-64 (80)
23 TIGR02700 flavo_MJ0208 archaeo 99.2 3E-12 7.7E-17 94.8 0.7 77 43-129 128-208 (237)
24 PRK08318 dihydropyrimidine deh 99.2 1.3E-11 3.3E-16 91.0 3.6 56 59-123 340-399 (413)
25 PRK09898 hypothetical protein; 99.2 7.5E-12 1.9E-16 92.4 1.1 25 98-122 151-175 (208)
26 PRK09625 porD pyruvate flavodo 99.1 9.9E-12 2.5E-16 91.7 1.4 56 59-124 54-111 (130)
27 PRK09477 napH quinol dehydroge 99.1 1.3E-11 3.2E-16 91.0 1.4 64 58-127 221-284 (287)
28 CHL00065 psaC photosystem I su 99.1 1E-11 2.6E-16 91.6 0.9 67 61-132 9-76 (81)
29 PRK12771 putative glutamate sy 99.1 2.7E-11 6.8E-16 89.0 2.7 51 62-121 507-557 (560)
30 PRK07118 ferredoxin; Validated 99.1 2E-11 5.1E-16 89.8 1.6 50 63-123 141-190 (276)
31 COG1144 Pyruvate:ferredoxin ox 99.1 3E-11 7.7E-16 88.7 2.1 57 58-123 32-88 (91)
32 PRK07118 ferredoxin; Validated 99.1 1.6E-11 4.1E-16 90.4 0.2 64 59-122 166-234 (276)
33 PRK08764 ferredoxin; Provision 99.1 4.8E-11 1.2E-15 87.5 1.7 54 59-122 84-137 (138)
34 PRK08493 NADH dehydrogenase su 99.0 1.1E-10 2.9E-15 85.2 3.4 83 33-122 118-225 (819)
35 PRK02651 photosystem I subunit 99.0 4.1E-11 1.1E-15 87.9 0.5 57 61-121 9-66 (81)
36 PRK07569 bidirectional hydroge 99.0 2.1E-10 5.2E-15 83.6 3.2 66 50-121 138-210 (236)
37 PRK05035 electron transport co 99.0 2.6E-11 6.5E-16 89.1 -2.7 109 42-154 353-467 (725)
38 TIGR02936 fdxN_nitrog ferredox 98.9 7.3E-10 1.9E-14 80.2 2.5 61 59-121 19-95 (96)
39 PRK09129 NADH dehydrogenase su 98.9 1.2E-09 3E-14 78.9 3.5 84 31-122 118-205 (777)
40 TIGR02163 napH_ ferredoxin-typ 98.9 5.8E-10 1.5E-14 80.9 1.4 69 49-122 191-263 (263)
41 PRK10330 electron transport pr 98.9 4.3E-10 1.1E-14 81.7 0.6 65 59-123 85-157 (181)
42 PRK08166 NADH dehydrogenase su 98.8 2.1E-09 5.4E-14 77.4 3.6 83 33-122 125-210 (858)
43 TIGR03294 FrhG coenzyme F420 h 98.8 1.1E-09 2.7E-14 79.3 1.5 48 59-117 172-219 (228)
44 COG1142 HycB Fe-S-cluster-cont 98.8 7.7E-10 2E-14 80.1 0.4 45 67-122 59-103 (165)
45 COG2878 Predicted NADH:ubiquin 98.8 7.2E-10 1.8E-14 80.3 0.0 58 59-126 113-170 (198)
46 TIGR02912 sulfite_red_C sulfit 98.8 1.4E-09 3.5E-14 78.6 1.3 65 48-123 162-229 (323)
47 COG1148 HdrA Heterodisulfide r 98.8 1.4E-09 3.5E-14 78.6 1.2 61 61-124 224-294 (622)
48 COG1149 MinD superfamily P-loo 98.8 1.2E-09 3E-14 79.0 0.8 71 38-123 50-121 (284)
49 COG0437 HybA Fe-S-cluster-cont 98.8 2.7E-09 6.9E-14 76.7 2.5 56 59-127 98-162 (203)
50 COG1145 NapF Ferredoxin [Energ 98.8 1.1E-09 2.7E-14 79.2 0.2 58 59-122 27-84 (99)
51 PRK10882 hydrogenase 2 protein 98.7 8.2E-10 2.1E-14 79.9 -1.1 57 59-126 142-211 (329)
52 COG2768 Uncharacterized Fe-S c 98.7 2.4E-09 6.1E-14 77.1 1.0 82 16-120 158-240 (354)
53 PRK13795 hypothetical protein; 98.7 4E-09 1E-13 75.7 2.1 50 62-120 576-625 (630)
54 COG2221 DsrA Dissimilatory sul 98.7 3.4E-09 8.7E-14 76.1 1.4 47 58-115 169-215 (317)
55 TIGR02494 PFLE_PFLC glycyl-rad 98.7 4.3E-09 1.1E-13 75.5 1.6 71 44-123 34-108 (305)
56 PRK09130 NADH dehydrogenase su 98.7 8.3E-09 2.1E-13 73.8 3.0 82 33-122 121-206 (680)
57 COG1142 HycB Fe-S-cluster-cont 98.7 4.8E-09 1.2E-13 75.2 1.4 58 59-125 80-143 (165)
58 TIGR01945 rnfC electron transp 98.7 5.8E-10 1.5E-14 80.9 -3.4 85 40-130 347-439 (444)
59 PRK06273 ferredoxin; Provision 98.7 1.3E-09 3.3E-14 78.7 -1.8 143 6-158 4-155 (163)
60 PRK09326 F420H2 dehydrogenase 98.7 6.7E-09 1.7E-13 74.3 1.3 57 59-115 10-67 (346)
61 TIGR03149 cyt_nit_nrfC cytochr 98.7 1.1E-08 2.8E-13 73.0 2.4 28 97-124 121-148 (225)
62 PRK07860 NADH dehydrogenase su 98.6 1.6E-08 4E-13 72.0 3.0 81 33-121 137-222 (809)
63 COG1146 Ferredoxin [Energy pro 98.6 1.5E-08 3.8E-13 72.2 2.1 58 59-123 6-63 (68)
64 PRK10194 ferredoxin-type prote 98.6 7.4E-09 1.9E-13 74.1 0.4 52 61-120 35-86 (164)
65 PRK10194 ferredoxin-type prote 98.6 1.5E-08 3.7E-13 72.3 1.3 72 48-122 57-160 (164)
66 COG1034 NuoG NADH dehydrogenas 98.6 2.9E-08 7.3E-13 70.5 2.7 84 31-122 118-205 (693)
67 COG4231 Indolepyruvate ferredo 98.6 1.5E-08 3.9E-13 72.1 0.9 55 58-123 574-630 (640)
68 TIGR03149 cyt_nit_nrfC cytochr 98.5 1.2E-07 3.1E-12 66.7 4.6 56 59-127 123-188 (225)
69 TIGR03336 IOR_alpha indolepyru 98.5 4.5E-08 1.1E-12 69.3 2.1 46 59-118 548-595 (595)
70 TIGR00402 napF ferredoxin-type 98.5 4E-08 1E-12 69.6 1.7 51 61-119 39-89 (161)
71 TIGR02745 ccoG_rdxA_fixG cytoc 98.5 2.6E-08 6.6E-13 70.7 0.6 55 43-113 215-279 (474)
72 PRK09898 hypothetical protein; 98.5 1.3E-07 3.3E-12 66.5 4.1 55 59-126 152-206 (208)
73 PRK12769 putative oxidoreducta 98.5 5.5E-08 1.4E-12 68.7 1.6 66 45-122 36-106 (654)
74 PRK12809 putative oxidoreducta 98.5 5.6E-08 1.4E-12 68.7 1.5 51 62-123 55-107 (639)
75 PRK09476 napG quinol dehydroge 98.4 1.8E-07 4.7E-12 65.5 3.5 54 62-118 60-116 (254)
76 COG1148 HdrA Heterodisulfide r 98.4 8.6E-08 2.2E-12 67.5 1.2 51 58-122 558-608 (622)
77 TIGR02951 DMSO_dmsB dimethylsu 98.4 7.5E-08 1.9E-12 67.9 0.7 56 59-127 94-158 (162)
78 TIGR03224 benzo_boxA benzoyl-C 98.4 1.3E-07 3.4E-12 66.4 1.8 50 59-119 8-57 (411)
79 PRK10330 electron transport pr 98.3 1.9E-07 4.8E-12 65.5 1.6 50 61-121 56-107 (181)
80 PRK09476 napG quinol dehydroge 98.2 3.6E-07 9.1E-12 63.8 1.0 64 59-122 135-207 (254)
81 COG0437 HybA Fe-S-cluster-cont 98.2 5.8E-07 1.5E-11 62.5 1.3 48 68-124 76-123 (203)
82 COG4656 RnfC Predicted NADH:ub 98.2 4.6E-08 1.2E-12 69.2 -4.4 61 62-124 366-426 (529)
83 TIGR03478 DMSO_red_II_bet DMSO 98.2 6.8E-07 1.7E-11 62.1 1.5 51 63-122 131-183 (321)
84 TIGR03287 methan_mark_16 putat 98.1 9.4E-07 2.4E-11 61.2 1.9 49 59-121 300-350 (391)
85 TIGR03478 DMSO_red_II_bet DMSO 98.1 1.2E-06 2.9E-11 60.6 1.8 51 59-122 160-219 (321)
86 TIGR01582 FDH-beta formate deh 98.1 2.2E-06 5.7E-11 58.9 2.8 51 59-122 132-191 (293)
87 PRK09623 vorD 2-ketoisovalerat 98.0 4E-06 1E-10 57.4 2.8 38 86-123 36-73 (105)
88 PRK12387 formate hydrogenlyase 97.9 3.7E-06 9.5E-11 57.5 1.3 56 59-114 71-128 (178)
89 PRK10882 hydrogenase 2 protein 97.9 1E-05 2.6E-10 54.8 3.6 50 62-120 112-163 (329)
90 TIGR02951 DMSO_dmsB dimethylsu 97.9 5.3E-06 1.4E-10 56.6 1.5 51 63-122 65-117 (162)
91 PRK00941 acetyl-CoA decarbonyl 97.8 1.2E-06 3.2E-11 60.4 -2.2 62 61-125 402-463 (779)
92 TIGR02910 sulfite_red_A sulfit 97.8 5.2E-06 1.3E-10 56.6 0.8 106 14-122 176-333 (346)
93 cd01916 ACS_1 Acetyl-CoA synth 97.8 2.1E-06 5.5E-11 59.0 -1.7 63 61-126 365-427 (731)
94 TIGR00273 TIGR00273 iron-sulfu 97.8 3.5E-06 8.9E-11 57.7 -0.7 58 62-121 297-365 (450)
95 TIGR02060 aprB adenylylsulfate 97.7 7.2E-06 1.8E-10 55.8 0.5 62 59-128 6-72 (138)
96 TIGR03379 glycerol3P_GlpC glyc 97.7 6.1E-06 1.6E-10 56.2 0.1 57 60-116 4-67 (397)
97 PRK13409 putative ATPase RIL; 97.7 2.1E-05 5.5E-10 52.9 2.6 52 60-122 14-70 (590)
98 COG1245 Predicted ATPase, RNas 97.7 2.5E-05 6.3E-10 52.5 2.8 59 53-122 8-71 (591)
99 PRK09624 porD pyuvate ferredox 97.7 2.8E-05 7.3E-10 52.1 2.8 38 86-123 36-73 (105)
100 PRK11168 glpC sn-glycerol-3-ph 97.7 8E-06 2E-10 55.5 -0.2 57 60-116 10-73 (400)
101 TIGR00402 napF ferredoxin-type 97.6 4.6E-05 1.2E-09 50.8 3.4 31 47-80 60-90 (161)
102 PRK08222 hydrogenase 4 subunit 97.6 2.1E-05 5.4E-10 52.9 1.4 50 59-108 71-122 (181)
103 COG1152 CdhA CO dehydrogenase/ 97.6 4.5E-06 1.1E-10 57.0 -2.6 65 61-128 400-464 (772)
104 COG1139 Uncharacterized conser 97.5 3.3E-05 8.5E-10 51.7 1.1 58 62-120 309-376 (459)
105 COG0479 FrdB Succinate dehydro 97.5 7.6E-06 1.9E-10 55.6 -2.3 57 59-116 140-213 (234)
106 PRK06259 succinate dehydrogena 97.4 1.4E-05 3.4E-10 54.1 -1.3 56 60-116 136-204 (491)
107 PRK08318 dihydropyrimidine deh 97.4 4.4E-05 1.1E-09 51.0 1.1 28 59-86 374-402 (413)
108 TIGR00314 cdhA CO dehydrogenas 97.4 7.3E-06 1.9E-10 55.7 -3.0 65 61-129 408-475 (795)
109 TIGR00276 TIGR00276 iron-sulfu 97.4 0.00012 3.2E-09 48.2 3.3 57 60-119 171-242 (297)
110 PRK08348 NADH-plastoquinone ox 97.4 5.5E-05 1.4E-09 50.3 1.5 21 61-81 73-93 (111)
111 TIGR00397 mauM_napG MauM/NapG 97.4 4.3E-05 1.1E-09 51.0 0.8 97 14-119 9-111 (213)
112 COG1143 NuoI Formate hydrogenl 97.4 5.9E-05 1.5E-09 50.2 1.5 25 59-83 93-117 (172)
113 PRK11274 glcF glycolate oxidas 97.4 2.1E-05 5.3E-10 53.0 -1.0 57 60-117 22-89 (407)
114 PRK12385 fumarate reductase ir 97.4 1.9E-05 4.9E-10 53.2 -1.2 57 60-116 145-217 (243)
115 TIGR00397 mauM_napG MauM/NapG 97.4 5.5E-05 1.4E-09 50.4 1.1 66 48-120 122-196 (213)
116 PRK05113 electron transport co 97.4 6.9E-05 1.8E-09 49.8 1.5 27 97-123 109-135 (184)
117 PRK12575 succinate dehydrogena 97.4 1.1E-05 2.8E-10 54.6 -2.6 56 61-116 144-216 (235)
118 PRK12577 succinate dehydrogena 97.3 2.7E-05 6.9E-10 52.3 -0.8 58 59-116 150-224 (330)
119 TIGR02066 dsrB sulfite reducta 97.3 5.9E-05 1.5E-09 50.2 0.8 45 69-116 210-254 (366)
120 TIGR02486 RDH reductive dehalo 97.3 3.9E-05 1E-09 51.3 -0.2 67 61-127 222-314 (338)
121 PRK08640 sdhB succinate dehydr 97.3 1.5E-05 3.8E-10 53.8 -2.4 60 60-120 149-225 (252)
122 PRK05950 sdhB succinate dehydr 97.3 1E-05 2.6E-10 54.9 -3.3 57 60-116 143-216 (235)
123 TIGR03048 PS_I_psaC photosyste 97.3 7E-05 1.8E-09 49.7 0.8 21 61-81 45-65 (80)
124 TIGR01944 rnfB electron transp 97.3 4.8E-05 1.2E-09 50.7 -0.1 29 96-124 120-148 (213)
125 PRK12771 putative glutamate sy 97.3 6.9E-05 1.8E-09 49.8 0.5 21 102-122 507-527 (560)
126 PRK02651 photosystem I subunit 97.3 7.5E-05 1.9E-09 49.6 0.7 22 101-122 9-30 (81)
127 PRK13409 putative ATPase RIL; 97.2 7.4E-05 1.9E-09 49.6 0.4 27 59-85 47-73 (590)
128 PRK08764 ferredoxin; Provision 97.2 9.3E-05 2.4E-09 49.0 0.9 28 97-124 82-109 (138)
129 COG1600 Uncharacterized Fe-S p 97.2 6E-05 1.5E-09 50.1 -0.1 53 60-116 184-249 (337)
130 PRK05888 NADH dehydrogenase su 97.2 0.00014 3.6E-09 47.8 1.7 23 59-81 95-117 (172)
131 PRK06991 ferredoxin; Provision 97.2 0.00012 3.1E-09 48.2 1.1 25 98-122 82-106 (274)
132 PRK07570 succinate dehydrogena 97.2 7.6E-05 1.9E-09 49.5 -0.0 61 60-121 156-231 (247)
133 pfam00037 Fer4 4Fe-4S binding 97.2 0.00013 3.3E-09 48.1 1.1 24 97-120 2-25 (26)
134 PRK09326 F420H2 dehydrogenase 97.2 0.00015 3.8E-09 47.7 1.4 17 59-75 51-67 (346)
135 PRK12386 fumarate reductase ir 97.2 3.6E-05 9.3E-10 51.5 -1.8 60 60-121 141-220 (250)
136 PRK13552 frdB fumarate reducta 97.2 2E-05 5.2E-10 53.0 -3.1 60 60-120 148-224 (240)
137 TIGR02512 Fe_only_hydrog hydro 97.2 0.00015 3.9E-09 47.6 1.4 65 59-123 5-72 (380)
138 PRK09626 oorD 2-oxoglutarate-a 97.2 1E-04 2.5E-09 48.8 0.5 26 98-123 13-38 (103)
139 COG1245 Predicted ATPase, RNas 97.1 0.00012 3E-09 48.4 0.7 33 48-85 42-74 (591)
140 PRK13984 putative oxidoreducta 97.0 0.00025 6.4E-09 46.3 1.6 25 59-83 84-108 (604)
141 TIGR03294 FrhG coenzyme F420 h 97.0 0.00017 4.2E-09 47.4 0.5 26 98-123 171-196 (228)
142 TIGR01971 NuoI NADH-quinone ox 97.0 0.00015 3.8E-09 47.7 0.1 24 59-82 87-110 (129)
143 COG2221 DsrA Dissimilatory sul 97.0 0.00021 5.3E-09 46.8 0.6 27 96-122 167-193 (317)
144 KOG3256 consensus 96.9 0.00037 9.5E-09 45.3 1.6 38 45-82 134-171 (212)
145 CHL00014 ndhI NADH dehydrogena 96.9 0.00025 6.5E-09 46.3 0.7 25 98-122 59-83 (173)
146 COG3383 Uncharacterized anaero 96.9 0.0004 1E-08 45.1 1.6 30 50-79 178-210 (978)
147 COG0247 GlpC Fe-S oxidoreducta 96.9 8.4E-05 2.1E-09 49.2 -1.9 56 59-117 7-74 (388)
148 TIGR02745 ccoG_rdxA_fixG cytoc 96.8 0.00034 8.6E-09 45.5 0.5 18 99-116 241-258 (474)
149 TIGR02179 PorD_KorD 2-oxoacid: 96.8 0.00034 8.8E-09 45.5 0.5 35 87-121 11-46 (84)
150 TIGR03290 CoB_CoM_SS_C CoB--Co 96.8 0.00029 7.3E-09 46.0 0.1 53 61-116 2-61 (144)
151 PRK06273 ferredoxin; Provision 96.7 0.00047 1.2E-08 44.7 0.8 25 99-123 49-73 (163)
152 TIGR01973 NuoG NADH-quinone ox 96.7 0.0011 2.7E-08 42.5 2.6 85 30-121 128-217 (715)
153 CHL00065 psaC photosystem I su 96.7 0.00032 8E-09 45.7 -0.3 23 60-82 45-67 (81)
154 PRK12576 succinate dehydrogena 96.7 0.00012 3.1E-09 48.3 -2.5 57 60-116 147-217 (311)
155 TIGR02936 fdxN_nitrog ferredox 96.7 0.00051 1.3E-08 44.4 0.6 26 97-122 17-42 (96)
156 COG0348 NapH Polyferredoxin [E 96.7 0.0004 1E-08 45.1 0.1 61 60-131 211-275 (386)
157 COG1149 MinD superfamily P-loo 96.6 0.00057 1.4E-08 44.2 0.5 24 59-82 97-120 (284)
158 PRK08493 NADH dehydrogenase su 96.5 0.001 2.6E-08 42.6 1.5 44 60-109 203-248 (819)
159 KOG0063 consensus 96.5 0.00052 1.3E-08 44.4 -0.1 54 59-122 48-101 (592)
160 pfam00037 Fer4 4Fe-4S binding 96.5 0.00058 1.5E-08 44.1 0.1 22 59-80 4-25 (26)
161 COG1146 Ferredoxin [Energy pro 96.4 0.0015 3.9E-08 41.5 1.7 32 48-83 32-63 (68)
162 TIGR02912 sulfite_red_C sulfit 96.4 0.00076 1.9E-08 43.4 0.1 48 72-122 149-199 (323)
163 COG1035 FrhB Coenzyme F420-red 96.3 0.00098 2.5E-08 42.7 0.4 45 61-116 5-49 (332)
164 PRK05352 Na(+)-translocating N 96.3 0.00034 8.6E-09 45.6 -2.1 56 58-116 370-430 (448)
165 TIGR02486 RDH reductive dehalo 96.3 0.00096 2.4E-08 42.8 0.1 27 98-124 216-245 (338)
166 COG1145 NapF Ferredoxin [Energ 96.2 0.0013 3.4E-08 41.9 0.7 27 96-122 24-50 (99)
167 PRK09477 napH quinol dehydroge 96.1 0.00077 2E-08 43.3 -0.9 44 68-117 196-240 (287)
168 COG2440 FixX Ferredoxin-like p 96.1 0.0013 3.3E-08 41.9 0.1 51 60-120 32-85 (99)
169 PRK07569 bidirectional hydroge 96.0 0.0028 7.2E-08 39.9 1.4 18 62-79 191-208 (236)
170 PRK09625 porD pyruvate flavodo 96.0 0.0039 1E-07 39.0 2.0 36 87-122 42-77 (130)
171 PRK13795 hypothetical protein; 96.0 0.0032 8E-08 39.6 1.5 23 101-123 575-597 (630)
172 COG1141 Fer Ferredoxin [Energy 95.9 0.0012 3.2E-08 42.1 -0.8 60 59-121 6-67 (68)
173 TIGR02700 flavo_MJ0208 archaeo 95.8 0.0022 5.6E-08 40.5 0.3 30 95-124 142-173 (237)
174 COG1144 Pyruvate:ferredoxin ox 95.7 0.0084 2.1E-07 37.0 2.7 37 87-123 21-57 (91)
175 KOG0063 consensus 95.7 0.0036 9.3E-08 39.2 0.8 50 61-122 14-71 (592)
176 TIGR02494 PFLE_PFLC glycyl-rad 95.5 0.0032 8E-08 39.6 0.1 26 59-84 84-109 (305)
177 COG2878 Predicted NADH:ubiquin 95.4 0.0033 8.4E-08 39.5 -0.2 28 97-124 111-138 (198)
178 TIGR03315 Se_ygfK putative sel 95.4 0.009 2.3E-07 36.8 2.0 55 59-117 879-937 (1012)
179 PRK09853 putative selenate red 95.4 0.0091 2.3E-07 36.8 2.0 54 60-117 896-953 (1032)
180 TIGR01582 FDH-beta formate deh 95.3 0.012 3E-07 36.1 2.5 25 98-122 131-155 (293)
181 TIGR02176 pyruv_ox_red pyruvat 95.0 0.0051 1.3E-07 38.3 -0.1 98 4-120 589-718 (1194)
182 COG1941 FrhG Coenzyme F420-red 95.0 0.0048 1.2E-07 38.5 -0.3 43 62-117 191-233 (247)
183 PRK09129 NADH dehydrogenase su 94.6 0.02 5.1E-07 34.7 2.1 36 46-81 168-204 (777)
184 COG2768 Uncharacterized Fe-S c 94.6 0.0083 2.1E-07 37.0 0.1 26 97-122 189-214 (354)
185 TIGR03224 benzo_boxA benzoyl-C 94.1 0.017 4.4E-07 35.1 0.9 21 59-79 37-57 (411)
186 COG4231 Indolepyruvate ferredo 94.1 0.013 3.3E-07 35.9 0.2 19 62-80 609-627 (640)
187 PTZ00305 NADH:ubiquinone oxido 94.0 0.043 1.1E-06 32.7 2.6 83 33-124 188-276 (297)
188 COG1453 Predicted oxidoreducta 94.0 0.021 5.3E-07 34.6 1.0 53 62-116 294-366 (391)
189 PRK07860 NADH dehydrogenase su 93.7 0.039 1E-06 32.9 2.0 55 48-108 188-245 (809)
190 TIGR01660 narH nitrate reducta 93.7 0.032 8.3E-07 33.4 1.5 49 63-121 186-234 (495)
191 TIGR02910 sulfite_red_A sulfit 93.4 0.029 7.3E-07 33.7 0.9 24 101-124 231-255 (346)
192 TIGR02163 napH_ ferredoxin-typ 93.2 0.019 4.8E-07 34.9 -0.3 49 67-121 175-225 (263)
193 TIGR00276 TIGR00276 iron-sulfu 93.1 0.026 6.7E-07 33.9 0.3 22 101-122 172-193 (297)
194 PRK05035 electron transport co 93.0 0.033 8.4E-07 33.3 0.7 19 101-119 376-394 (725)
195 TIGR03336 IOR_alpha indolepyru 92.9 0.032 8.1E-07 33.5 0.5 22 94-115 543-566 (595)
196 TIGR01945 rnfC electron transp 92.7 0.034 8.8E-07 33.2 0.5 16 101-116 372-387 (444)
197 COG1150 HdrC Heterodisulfide r 92.1 0.018 4.6E-07 34.9 -1.6 57 60-118 38-100 (195)
198 COG1140 NarY Nitrate reductase 91.9 0.079 2E-06 31.0 1.5 50 63-121 183-234 (513)
199 PRK05950 sdhB succinate dehydr 91.9 0.05 1.3E-06 32.2 0.5 17 99-115 142-158 (235)
200 PRK08166 NADH dehydrogenase su 91.9 0.097 2.5E-06 30.5 1.9 42 62-108 190-233 (858)
201 PRK12814 putative NADPH-depend 91.7 0.059 1.5E-06 31.8 0.7 24 96-119 611-634 (652)
202 COG1035 FrhB Coenzyme F420-red 91.4 0.069 1.8E-06 31.4 0.8 18 104-121 239-257 (332)
203 PRK08640 sdhB succinate dehydr 91.2 0.053 1.3E-06 32.1 0.1 18 99-116 148-165 (252)
204 TIGR03287 methan_mark_16 putat 91.2 0.065 1.7E-06 31.6 0.5 22 98-119 299-322 (391)
205 PRK12386 fumarate reductase ir 90.8 0.024 6.2E-07 34.2 -2.0 19 99-117 140-158 (250)
206 PRK07570 succinate dehydrogena 90.8 0.073 1.9E-06 31.2 0.4 19 98-116 154-172 (247)
207 PRK12385 fumarate reductase ir 90.5 0.027 6.8E-07 33.9 -2.0 19 99-117 144-162 (243)
208 PRK12575 succinate dehydrogena 90.2 0.078 2E-06 31.1 0.2 17 100-116 143-159 (235)
209 TIGR00403 ndhI NADH-plastoquin 90.0 0.076 1.9E-06 31.1 -0.0 18 99-116 61-78 (187)
210 TIGR00314 cdhA CO dehydrogenas 89.8 0.077 2E-06 31.1 -0.1 15 102-116 409-423 (795)
211 TIGR03379 glycerol3P_GlpC glyc 89.8 0.13 3.2E-06 29.8 0.9 18 59-76 50-67 (397)
212 COG0479 FrdB Succinate dehydro 89.7 0.12 2.9E-06 30.0 0.7 20 99-118 140-159 (234)
213 PRK11168 glpC sn-glycerol-3-ph 89.6 0.15 3.8E-06 29.3 1.2 18 60-77 57-74 (400)
214 PRK13552 frdB fumarate reducta 89.5 0.033 8.5E-07 33.3 -2.2 20 98-117 146-165 (240)
215 PRK12814 putative NADPH-depend 88.8 0.12 3.1E-06 29.9 0.3 39 59-119 614-652 (652)
216 TIGR00384 dhsB succinate dehyd 88.2 0.16 4E-06 29.2 0.5 60 59-118 149-226 (236)
217 COG1600 Uncharacterized Fe-S p 88.2 0.11 2.7E-06 30.2 -0.4 22 101-122 185-206 (337)
218 PRK11274 glcF glycolate oxidas 87.9 0.26 6.6E-06 27.9 1.5 17 61-77 73-89 (407)
219 PRK00941 acetyl-CoA decarbonyl 87.8 0.13 3.3E-06 29.7 -0.1 16 61-76 440-455 (779)
220 cd01916 ACS_1 Acetyl-CoA synth 87.7 0.13 3.3E-06 29.7 -0.1 16 101-116 365-380 (731)
221 PRK09130 NADH dehydrogenase su 86.0 0.28 7.1E-06 27.7 0.8 19 63-81 187-205 (680)
222 COG1034 NuoG NADH dehydrogenas 85.8 0.14 3.6E-06 29.5 -0.8 20 64-83 187-206 (693)
223 COG4656 RnfC Predicted NADH:ub 85.8 0.2 5.2E-06 28.5 -0.0 19 100-118 364-382 (529)
224 TIGR02066 dsrB sulfite reducta 85.7 0.3 7.6E-06 27.5 0.8 20 59-78 237-256 (366)
225 COG1152 CdhA CO dehydrogenase/ 85.1 0.19 4.8E-06 28.7 -0.4 17 60-76 437-453 (772)
226 COG1141 Fer Ferredoxin [Energy 85.1 0.34 8.8E-06 27.1 0.9 21 97-117 4-24 (68)
227 PRK12577 succinate dehydrogena 84.6 0.29 7.5E-06 27.5 0.4 19 100-118 151-169 (330)
228 TIGR02060 aprB adenylylsulfate 84.5 0.29 7.3E-06 27.6 0.3 22 61-82 45-66 (138)
229 TIGR02064 dsrA sulfite reducta 83.1 0.58 1.5E-05 25.7 1.4 44 70-123 277-320 (430)
230 TIGR01660 narH nitrate reducta 82.1 0.65 1.7E-05 25.4 1.3 47 59-119 212-267 (495)
231 COG0247 GlpC Fe-S oxidoreducta 81.6 0.57 1.4E-05 25.8 0.9 20 60-79 57-76 (388)
232 COG4624 Iron only hydrogenase 81.4 0.39 9.9E-06 26.8 -0.0 53 61-123 2-56 (411)
233 TIGR00273 TIGR00273 iron-sulfu 81.1 0.43 1.1E-05 26.5 0.1 26 99-124 294-319 (450)
234 COG1941 FrhG Coenzyme F420-red 81.1 0.48 1.2E-05 26.2 0.3 25 98-122 186-211 (247)
235 PRK12576 succinate dehydrogena 79.7 0.55 1.4E-05 25.9 0.2 19 100-118 147-165 (311)
236 TIGR03290 CoB_CoM_SS_C CoB--Co 79.5 0.68 1.7E-05 25.3 0.7 19 59-77 44-62 (144)
237 COG1139 Uncharacterized conser 79.3 0.51 1.3E-05 26.1 -0.0 24 101-124 308-331 (459)
238 PRK12810 gltD glutamate syntha 72.2 1.5 3.8E-05 23.2 0.8 56 60-116 43-100 (472)
239 PRK12831 putative oxidoreducta 66.7 2.3 5.8E-05 22.1 0.8 56 60-116 39-96 (464)
240 PRK00783 DNA-directed RNA poly 66.5 7.9 0.0002 18.8 3.5 73 63-145 171-246 (265)
241 PRK10076 pyruvate formate lyas 64.1 1.5 3.9E-05 23.2 -0.5 15 67-81 1-15 (213)
242 PRK11749 putative oxidoreducta 60.8 3.3 8.3E-05 21.1 0.7 19 60-78 39-59 (460)
243 cd07030 RNAP_D D subunit of Ar 53.5 13 0.00034 17.4 2.9 71 63-145 171-244 (259)
244 PRK12778 putative bifunctional 50.5 6.1 0.00015 19.5 0.7 18 60-77 336-355 (760)
245 COG1313 PflX Uncharacterized F 46.8 15 0.00039 17.0 2.3 37 122-159 136-172 (335)
246 KOG2282 consensus 40.6 2.7 6.9E-05 21.6 -2.4 62 60-122 174-236 (708)
247 COG0493 GltD NADPH-dependent g 39.6 10 0.00026 18.1 0.5 56 60-116 22-78 (457)
248 COG1798 DPH5 Diphthamide biosy 36.1 32 0.00081 15.1 3.3 90 26-130 127-226 (260)
249 TIGR01318 gltD_gamma_fam gluta 36.1 13 0.00032 17.5 0.5 20 59-78 39-62 (480)
250 pfam12225 MTHFR_C Methylene-te 35.1 14 0.00035 17.3 0.6 19 60-78 20-44 (98)
251 PRK09193 indolepyruvate ferred 33.9 23 0.0006 15.9 1.6 52 59-117 638-690 (1155)
252 PRK13029 2-oxoacid ferredoxin 32.9 22 0.00055 16.1 1.2 52 59-117 655-707 (1186)
253 PRK13030 2-oxoacid ferredoxin 31.8 24 0.00061 15.8 1.3 51 59-116 638-689 (1168)
254 pfam07227 DUF1423 Protein of u 25.8 39 0.001 14.5 1.6 23 14-36 66-88 (446)
255 pfam06902 DUF1271 Protein of u 24.7 28 0.00072 15.4 0.7 16 59-74 11-26 (64)
256 pfam03892 NapB Nitrate reducta 22.9 54 0.0014 13.7 2.6 47 31-81 45-91 (134)
257 COG3043 NapB Nitrate reductase 22.7 50 0.0013 13.9 1.6 44 34-81 64-107 (155)
258 PRK12775 putative trifunctiona 22.1 37 0.00094 14.7 0.8 56 60-116 330-387 (993)
259 COG5446 Predicted integral mem 21.8 57 0.0015 13.5 4.1 29 1-29 1-29 (233)
260 KOG2415 consensus 20.9 54 0.0014 13.6 1.5 51 67-121 558-608 (621)
261 TIGR02484 CitB CitB domain pro 20.2 26 0.00066 15.6 -0.3 43 62-113 15-60 (392)
No 1
>PRK05888 NADH dehydrogenase subunit I; Provisional
Probab=100.00 E-value=0 Score=330.99 Aligned_cols=157 Identities=62% Similarity=1.111 Sum_probs=145.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHCCCEEEEEECCCCCCCEECCCCHHHHHHCCCCCCCC
Q ss_conf 89999999999999999999998406985225787577568000572378740588742213452232533088321012
Q gi|254780861|r 4 FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESG 83 (163)
Q Consensus 4 ~~~~~~~~~~~~~~~gl~~t~k~~~~~~~T~~YP~e~~~~~~rfRG~~~l~~~~~~~ekCi~C~~C~~~CP~~aI~i~~~ 83 (163)
++..+.. ++++++||++|+||||++++|+|||+|+.++++||||+|.|.+|++|+|+||||++|+++||++||.|+..
T Consensus 3 ~~~~~~~--~~~~~~Gl~vt~k~~f~k~vT~qYP~ek~~~~~r~RG~~~l~~d~~g~ekCi~C~lC~~~CP~~~I~i~~~ 80 (172)
T PRK05888 3 VKEALVG--FKKSLKGLWVTLKYFFKKKVTIQYPEEKLPLSPRFRGRHALRRYPNGEERCIACKLCEAICPANAITIEAA 80 (172)
T ss_pred HHHHHHH--HHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCCCCEEEEEECCCCCEECCCCCCHHHHCCCCCCEEEEE
T ss_conf 8999998--99999669999999759972400988647678552342776406888740357765565588776789875
Q ss_pred CCCCCCCEEEEEEEEEHHHCCCCCCCHHHCCCCEEECCCCCCCCCCCHHHHCCCHHHHHHH-------------HHHHHH
Q ss_conf 2454473357788850555586887233378310303677356757687733299999884-------------899999
Q gi|254780861|r 84 PRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNN-------------GDRWES 150 (163)
Q Consensus 84 ~~~~~~~~~~~~~~id~~~Ci~Cg~Cv~vCP~~AI~~~~~~e~a~~~r~~l~~~k~~Ll~~-------------g~~~~~ 150 (163)
+. .+|++++..|+||+++|||||+|||+||++||+||++||+|+++|++|+|++|+||.+ |+.++.
T Consensus 81 ~~-~~g~k~~~~~~Id~~rCifCGlCve~CP~~AI~~t~~~E~a~~~R~~liy~k~~Ll~~~~~~~~~~~~~~~g~~~~~ 159 (172)
T PRK05888 81 ER-EDGRRRTTRYDINFGRCIFCGFCEEACPTDAIVETPDFELAEETREDLIYTKEKLLANYRVAGLAILPKGKGDRYEE 159 (172)
T ss_pred CC-CCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCHHHHHCCCCCCCCCCCCCCCCCHHHH
T ss_conf 08-99857745777534605788882210888724478863247688889366999972230003455554567635889
Q ss_pred HHHHHHHHCCCCC
Q ss_conf 9985077455789
Q gi|254780861|r 151 EIVRNIVTDSPYR 163 (163)
Q Consensus 151 ~~~~~~~~d~~~r 163 (163)
..+.+...+.|++
T Consensus 160 ~~~~~~~~~~~~~ 172 (172)
T PRK05888 160 EIAIDRAADLPYR 172 (172)
T ss_pred HHHHHHHCCCCCC
T ss_conf 9887552033579
No 2
>KOG3256 consensus
Probab=100.00 E-value=0 Score=318.11 Aligned_cols=159 Identities=69% Similarity=1.227 Sum_probs=152.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHCCCEEEEEECCCCCCCEECCCCHHHHHHCCCCCCCC
Q ss_conf 89999999999999999999998406985225787577568000572378740588742213452232533088321012
Q gi|254780861|r 4 FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESG 83 (163)
Q Consensus 4 ~~~~~~~~~~~~~~~gl~~t~k~~~~~~~T~~YP~e~~~~~~rfRG~~~l~~~~~~~ekCi~C~~C~~~CP~~aI~i~~~ 83 (163)
..+-+..+|+.++++|+.+||+|+|+.|+|++||+||.++++||||.|.|.|+|.|+||||+|.+|+.+||+++|.++++
T Consensus 54 ~n~~~~tl~~te~~rGf~itLsh~f~~p~TInYPfEKgplS~RFRGehalrRyp~geerCIACklCeavCPaqaitieae 133 (212)
T KOG3256 54 MNRGQQTLFATELIRGFMITLSHTFREPVTINYPFEKGPLSPRFRGEHALRRYPSGEERCIACKLCEAVCPAQAITIEAE 133 (212)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHCCCCCCEEEEE
T ss_conf 88888999999999888766776437871355741237888011561233217885212136788887487445455222
Q ss_pred CCCCCCCEEEEEEEEEHHHCCCCCCCHHHCCCCEEECCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 24544733577888505555868872333783103036773567576877332999998848999999985077455789
Q gi|254780861|r 84 PRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 (163)
Q Consensus 84 ~~~~~~~~~~~~~~id~~~Ci~Cg~Cv~vCP~~AI~~~~~~e~a~~~r~~l~~~k~~Ll~~g~~~~~~~~~~~~~d~~~r 163 (163)
.+ .||+++..+|+||+++|||||+|+|+||++||+++++||+|++++++|.|||++|+.||++|+.++++++..|+-+|
T Consensus 134 ~r-~dgsrRttrYdIDmtkCIyCG~CqEaCPvdaivegpnfEfsTetheELlYnkekLl~ngd~Wese~a~N~~~~~lyr 212 (212)
T KOG3256 134 ER-TDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEFSTETHEELLYNKEKLLTNGDRWESEIAKNLQAELLYR 212 (212)
T ss_pred EC-CCCCCCCEEECCCCEEEEEECCHHHHCCCCCEECCCCCEECCCCHHHHHHHHHHHHHCCCCCCCHHHHCCCCHHHCC
T ss_conf 13-77542102104452146560453643872312116873001344898731288886356623656665255233229
No 3
>TIGR01971 NuoI NADH-quinone oxidoreductase, chain I; InterPro: IPR010226 This entry represents the I subunit (one of 14 subunits, A to N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This family does not contain 'I' subunits from the closely related F420H2 dehydrogenase and formate hydrogenlyase complexes.; GO: 0016651 oxidoreductase activity acting on NADH or NADPH, 0006118 electron transport.
Probab=100.00 E-value=0 Score=320.17 Aligned_cols=122 Identities=54% Similarity=1.003 Sum_probs=117.4
Q ss_pred HHHHHHHHHCCCC-CCCCCCCCCCCCC-CHHCCCEEEEEECCCCCCCEECCCCHHHHHHCCCCCCCCCC-C----CCCCE
Q ss_conf 9999999840698-5225787577568-00057237874058874221345223253308832101224-5----44733
Q gi|254780861|r 19 AFFLCLRYFFKAK-TTINYPFEKGSTS-PRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPR-C----HDGTR 91 (163)
Q Consensus 19 gl~~t~k~~~~~~-~T~~YP~e~~~~~-~rfRG~~~l~~~~~~~ekCi~C~~C~~~CP~~aI~i~~~~~-~----~~~~~ 91 (163)
||++|+||||+|+ +|+|||+|+..+| +||||+|.|.+++ |+|+||||.+|++|||++||.|+..+. . ++|+|
T Consensus 1 g~~~~~~y~f~~~rvT~~YP~e~~~LpypRfRG~i~L~r~p-G~e~CiaC~LC~~~CP~~~I~~~~~~~~~enPv~~g~r 79 (129)
T TIGR01971 1 GLGLTLKYFFSKPRVTLQYPEEKLYLPYPRFRGRIVLTRDP-GEEKCIACELCARVCPADAIRVVTEERETENPVEDGKR 79 (129)
T ss_pred CCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECC-CCCEEECCCCEEECCCCCCCEEEECCCCCCCCCCCCCC
T ss_conf 90002245327898977788677667889754258765369-97135643010000754441565203888887323652
Q ss_pred EEEEEEEEHHHCCCCCCCHHHCCCCEEECCCCCCCCCCCHHHHCCCHHHH
Q ss_conf 57788850555586887233378310303677356757687733299999
Q gi|254780861|r 92 RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERL 141 (163)
Q Consensus 92 ~~~~~~id~~~Ci~Cg~Cv~vCP~~AI~~~~~~e~a~~~r~~l~~~k~~L 141 (163)
++..|+||+|+|||||+|+|+||++||+||++||+|+++|++|+|++++|
T Consensus 80 ~~~~y~In~grCifCGlC~E~CP~~AI~lt~~fE~a~~~R~~L~y~~~~L 129 (129)
T TIGR01971 80 RLKFYQINFGRCIFCGLCEEACPTDAIVLTPEFELATYTRSDLVYDKEDL 129 (129)
T ss_pred CCCCCCCCCEEEEEEECCCCCCCCHHHHCCCCCCCCCCCHHHCCCCCCCC
T ss_conf 37896213212223307511271015433730134011031225241139
No 4
>COG1143 NuoI Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Energy production and conversion]
Probab=100.00 E-value=0 Score=301.28 Aligned_cols=154 Identities=45% Similarity=0.854 Sum_probs=136.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHCCCEEEEEECCCCCCCEECCCCHHHHHHCCCCC
Q ss_conf 93689999999999999999999998406985225787577568000572378740588742213452232533088321
Q gi|254780861|r 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI 80 (163)
Q Consensus 1 m~~~~~~~~~~~~~~~~~gl~~t~k~~~~~~~T~~YP~e~~~~~~rfRG~~~l~~~~~~~ekCi~C~~C~~~CP~~aI~i 80 (163)
|++....-+.+++ ++++||++++||+|++++|++||+|+.++++||||.|.|.+ ++||||++|+++||++||.|
T Consensus 1 ~~~~~~~~~~~~~-~~~~~l~~~~K~~fk~~vT~~YP~e~~~~~~rfRG~~~l~~-----~~CIgC~lCa~iCP~~aI~m 74 (172)
T COG1143 1 MKLKEAAKVKFLL-DFLKGLWTTLKNLFKKPVTIEYPEEKIPLSPRFRGRHVLDR-----DKCIGCGLCANICPANAITM 74 (172)
T ss_pred CCHHHHHHHHHHH-HHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCCCEEECCC-----CCCCCHHHHHHHCCCCCEEE
T ss_conf 9288887877789-99999999999873787300076656899987343442463-----57826168886398473189
Q ss_pred CCCCCCCCCCEEEEEEEEEHHHCCCCCCCHHHCCCCEEECCCCCCCCCCCHHHHCCCHHHHHHHHHHHHH----HHHHHH
Q ss_conf 0122454473357788850555586887233378310303677356757687733299999884899999----998507
Q gi|254780861|r 81 ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWES----EIVRNI 156 (163)
Q Consensus 81 ~~~~~~~~~~~~~~~~~id~~~Ci~Cg~Cv~vCP~~AI~~~~~~e~a~~~r~~l~~~k~~Ll~~g~~~~~----~~~~~~ 156 (163)
++.++..+|+++...|+||+++|||||+|+|+|||+||+||++||+++++|+++++++++|+..+++++. ..++..
T Consensus 75 ~~~~~~~~g~~~~~~~~In~grCIfCg~C~e~CPt~Al~~t~~~e~a~~~r~dl~~~~~~ll~~~~~~~~~~~~~~~~~~ 154 (172)
T COG1143 75 ETAERKVDGRKKPKRPDINLGRCIFCGLCVEVCPTGALVLTPEFELASYKREDLVYDKERLLAPPDKKEEDKPFEIARLL 154 (172)
T ss_pred EECCCCCCCCCCCCCCEECCCCCCCCCCHHHHCCHHHHCCCCCEEECCCCHHHHHCCHHHHCCCCCCCCCCCCCCHHHHH
T ss_conf 97656788842133431433512611751423966562277411542454676513478761683212346532035543
Q ss_pred HHCC
Q ss_conf 7455
Q gi|254780861|r 157 VTDS 160 (163)
Q Consensus 157 ~~d~ 160 (163)
..+.
T Consensus 155 ~~~~ 158 (172)
T COG1143 155 ALDA 158 (172)
T ss_pred CCCH
T ss_conf 2231
No 5
>CHL00014 ndhI NADH dehydrogenase subunit I
Probab=100.00 E-value=5.6e-45 Score=295.19 Aligned_cols=132 Identities=31% Similarity=0.589 Sum_probs=120.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHCCCEEEEEECCCCCCCEECCCCHHHHHHCCCCCCC
Q ss_conf 68999999999999999999999840698522578757756800057237874058874221345223253308832101
Q gi|254780861|r 3 IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82 (163)
Q Consensus 3 ~~~~~~~~~~~~~~~~gl~~t~k~~~~~~~T~~YP~e~~~~~~rfRG~~~l~~~~~~~ekCi~C~~C~~~CP~~aI~i~~ 82 (163)
++++++.+. +.|.+||++|++|+|++|+|+|||+|+.++|+||||++.+ +.+|||||++|+++||+++|.+++
T Consensus 11 y~~~~~~a~--~~i~qGm~vT~~hmfrkpvTiqYP~ek~~~~~RfRGri~~-----~~dkCI~C~~C~~vCP~~~i~Vd~ 83 (173)
T CHL00014 11 YGQQTVRAA--RYIGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHF-----EFDKCIACEVCVRVCPIDLPVVDW 83 (173)
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEC-----CCCCCCCHHHHHHHCCCCCEEECC
T ss_conf 999999999--9998317277898779974113988888899886870005-----841172443698659777616335
Q ss_pred CCCCCCCCEEEEEEEEEHHHCCCCCCCHHHCCCCEEECCCCCCCCCCCHHHHCCCHHHH
Q ss_conf 22454473357788850555586887233378310303677356757687733299999
Q gi|254780861|r 83 GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERL 141 (163)
Q Consensus 83 ~~~~~~~~~~~~~~~id~~~Ci~Cg~Cv~vCP~~AI~~~~~~e~a~~~r~~l~~~k~~L 141 (163)
+...+.+++....|+||+++|||||+|||+||++||+||++||+|+++|++|+||+-.|
T Consensus 84 ~~~~~~~kK~~~~y~ID~grCIFCG~CvEaCPtdAI~mT~EyEla~ydR~eL~yd~~~l 142 (173)
T CHL00014 84 KLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELNYNQIAL 142 (173)
T ss_pred CCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCHHHH
T ss_conf 56788885011467756162130367110178680335675546667888814102442
No 6
>PRK08348 NADH-plastoquinone oxidoreductase subunit; Provisional
Probab=100.00 E-value=3.4e-34 Score=229.26 Aligned_cols=106 Identities=24% Similarity=0.563 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCC-CCCCCCHHCCCEEEEEECCCCCCCEECCCCHHHHHHCCCCCCCCCCCCCCCEEEEE
Q ss_conf 99999999984069852257875-77568000572378740588742213452232533088321012245447335778
Q gi|254780861|r 17 VGAFFLCLRYFFKAKTTINYPFE-KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 (163)
Q Consensus 17 ~~gl~~t~k~~~~~~~T~~YP~e-~~~~~~rfRG~~~l~~~~~~~ekCi~C~~C~~~CP~~aI~i~~~~~~~~~~~~~~~ 95 (163)
++-|++|+||||+||+|++||++ +.++|+||||++.+ |.++||||++|+++||++||.+..+ ++ .
T Consensus 2 ~~mL~~tlk~lf~kp~T~~YP~~~~~~~p~r~RG~~~~-----d~dkCigC~~C~~~CP~~aI~~~~~-----~~----~ 67 (111)
T PRK08348 2 LPLLPTVLRNLFKKPATNLFPATEPVPVPENFRGKILY-----NVDKCVGCRMCVTVCPAGVFVYLPE-----IR----K 67 (111)
T ss_pred CCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEC-----CCCCCCCCCHHHHHCCCCCCEECCC-----CC----E
T ss_conf 64699999985599813189887766899876782056-----8552828072877593220675277-----66----6
Q ss_pred EEEEHHHCCCCCCCHHHCCCCEEECCCCCCCCCCCHHHHCC
Q ss_conf 88505555868872333783103036773567576877332
Q gi|254780861|r 96 YDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYY 136 (163)
Q Consensus 96 ~~id~~~Ci~Cg~Cv~vCP~~AI~~~~~~e~a~~~r~~l~~ 136 (163)
+.||.++|++||+|+++||++||+|+++||+|+++|+|+.+
T Consensus 68 ~~i~~~~Ci~Cg~C~~~CP~~AI~~t~~~ela~~~R~d~~~ 108 (111)
T PRK08348 68 VALWTGRCVFCGQCVDVCPTGALQMSDDFLLASYDRYDEKF 108 (111)
T ss_pred EEECCCCCCCCCCCCCCCCCCCEECCCEEECCCCCCCCCCC
T ss_conf 78777908538875773772836876803625476120021
No 7
>PRK08222 hydrogenase 4 subunit H; Validated
Probab=100.00 E-value=1.5e-34 Score=231.51 Aligned_cols=106 Identities=36% Similarity=0.787 Sum_probs=91.7
Q ss_pred HHHHHHCC-CCCCCCCCCCCCCCCCHHCCCEEEEEECCCCCCCEECCCCHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEH
Q ss_conf 99998406-98522578757756800057237874058874221345223253308832101224544733577888505
Q gi|254780861|r 22 LCLRYFFK-AKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDM 100 (163)
Q Consensus 22 ~t~k~~~~-~~~T~~YP~e~~~~~~rfRG~~~l~~~~~~~ekCi~C~~C~~~CP~~aI~i~~~~~~~~~~~~~~~~~id~ 100 (163)
.++|+.++ +++|++||+++.++|+||||.|.+ +.++||||++|+.+||++||.|+.... .+. ..|+||+
T Consensus 3 kllk~~lk~G~~T~~YP~e~~~~~~~fRG~p~~-----d~ekCIgC~~C~~~CP~~AI~~~~d~~--~~~---r~~~id~ 72 (181)
T PRK08222 3 KLLKTIMRAGTATVKYPFAPLEVSPGFRGKPDL-----MPSQCIACGACACACPANALTIQTDDQ--QNS---RTWQLYL 72 (181)
T ss_pred HHHHHHHCCCCHHHCCCCCCCCCCCCCCCEEEC-----CHHHCCCHHHHHHHCCCCCCEEEECCC--CCC---EEEEECC
T ss_conf 899999638980203999999999996773316-----810184532898758602668762267--885---6888526
Q ss_pred HHCCCCCCCHHHCCCCEEECCCCCCCCCCCHHHHCCC
Q ss_conf 5558688723337831030367735675768773329
Q gi|254780861|r 101 IKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYD 137 (163)
Q Consensus 101 ~~Ci~Cg~Cv~vCP~~AI~~~~~~e~a~~~r~~l~~~ 137 (163)
++|||||+|++|||++||.||++||+|+++|++|+-.
T Consensus 73 grCIfCG~C~EvCPt~AI~lt~efElA~~~k~dl~~~ 109 (181)
T PRK08222 73 GRCIYCGRCEEVCPTRAIQLTNNFELTVTNKADLYTR 109 (181)
T ss_pred CCCCCCCHHHHHCCCCCCCCCCCEEECCCCHHHHHHE
T ss_conf 6167877244148814206776123222566653112
No 8
>PRK12387 formate hydrogenlyase complex iron-sulfur subunit; Provisional
Probab=99.98 E-value=1e-33 Score=226.40 Aligned_cols=108 Identities=29% Similarity=0.689 Sum_probs=93.0
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCHHCCCEEEEEECCCCCCCEECCCCHHHHHHCCCCCCCCCCCCCCCEEEEEEEEE
Q ss_conf 99999984069852257875775680005723787405887422134522325330883210122454473357788850
Q gi|254780861|r 20 FFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99 (163)
Q Consensus 20 l~~t~k~~~~~~~T~~YP~e~~~~~~rfRG~~~l~~~~~~~ekCi~C~~C~~~CP~~aI~i~~~~~~~~~~~~~~~~~id 99 (163)
|++..+++..+++|++||+++.++|+||||+|.+ |.++||||++|+.+||++||.|+.... .|. ..|+||
T Consensus 2 lk~l~~~l~~Gp~T~~YP~~~~~~p~~fRG~~~~-----d~ekCigC~~C~~~CP~~AI~~~~~~~--~~~---~~~~id 71 (178)
T PRK12387 2 FKFIKKVIKTGTATSSYPLEPIAVDKNFRGKPEY-----NPQQCIGCAACVNACPSNALTVETDLA--TGE---LAWQFN 71 (178)
T ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC-----CCHHCCCHHHHHHHCCCCCCEEEECCC--CCC---EEEEEC
T ss_conf 6899998458983111999999999986884657-----831162847999658631287540477--883---578863
Q ss_pred HHHCCCCCCCHHHCCCCEEECCCCCCCCCCCHHHHCCC
Q ss_conf 55558688723337831030367735675768773329
Q gi|254780861|r 100 MIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYD 137 (163)
Q Consensus 100 ~~~Ci~Cg~Cv~vCP~~AI~~~~~~e~a~~~r~~l~~~ 137 (163)
+++|||||+|+++||++||.||++||+|++++++|+-.
T Consensus 72 ~~rCifCG~C~evCPt~AI~lt~efElA~~~k~dl~~~ 109 (178)
T PRK12387 72 LGRCIFCGRCEEVCPTAAIKLSQEYELAVWKKEDLLQQ 109 (178)
T ss_pred CCCCCCCCHHHHHCCCCCCCCCHHHHHHHCCHHHCEEE
T ss_conf 04066867156668824223361877541255344567
No 9
>TIGR00403 ndhI NADH-plastoquinone oxidoreductase, I subunit; InterPro: IPR004497 NADH-plastoquinone oxidoreductase subunit I (1.6.5.3 from EC) catalyses the conversion of plastoquinone and NADH to plastoquinol and NAD(+). The enzyme binds two 4FE-4S clusters at iron-sulphur centres which are similar to those of the bacterial-type 4FE-4S ferredoxins.; GO: 0008137 NADH dehydrogenase (ubiquinone) activity, 0006118 electron transport.
Probab=99.95 E-value=3.2e-30 Score=204.94 Aligned_cols=125 Identities=30% Similarity=0.597 Sum_probs=113.8
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHCCCEEEEEECCCCCCCEECCCCHHHHHHCCCCCCCCCCCCCCCE
Q ss_conf 99999999999999840698522578757756800057237874058874221345223253308832101224544733
Q gi|254780861|r 12 FLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91 (163)
Q Consensus 12 ~~~~~~~gl~~t~k~~~~~~~T~~YP~e~~~~~~rfRG~~~l~~~~~~~ekCi~C~~C~~~CP~~aI~i~~~~~~~~~~~ 91 (163)
..+-+-+|+.+|+.|+-+.|+|++||+|+...++||||++.+. .+|||+|..|+++||.+.-.+++.-...-+++
T Consensus 19 aa~yiGq~~~~tl~h~~r~P~t~~yPyek~i~serfrGrihfe-----fdkCiaCevCvrvCPi~lP~vdW~~~k~~k~k 93 (187)
T TIGR00403 19 AARYIGQGLLVTLDHMNRLPITIQYPYEKLIPSERFRGRIHFE-----FDKCIACEVCVRVCPINLPVVDWEFEKAIKKK 93 (187)
T ss_pred HHHHHCCEEEEEEECCCCCCEEEECCCHHCCCCCCCCCEEEEE-----ECCEEEEEEEEEEECCCCCEECHHHHHHHHHH
T ss_conf 8775122025664212477526756700134431001105653-----13334423456762143631204555467776
Q ss_pred EEEEEEEEHHHCCCCCCCHHHCCCCEEECCCCCCCCCCCHHHHCCCHHHH
Q ss_conf 57788850555586887233378310303677356757687733299999
Q gi|254780861|r 92 RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERL 141 (163)
Q Consensus 92 ~~~~~~id~~~Ci~Cg~Cv~vCP~~AI~~~~~~e~a~~~r~~l~~~k~~L 141 (163)
....|.||+|.|||||.||+.||+++|+|+.+||+++|+|.+|-|+.=.|
T Consensus 94 ~l~~ysidfGvCifCGnCveyCPtnClsmteeyel~~y~rh~lny~~~al 143 (187)
T TIGR00403 94 QLKNYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELSTYDRHELNYDQIAL 143 (187)
T ss_pred HHHHHHHHCCEEEEECCCCCCCCCCCCCCCHHHHHHHCCHHCCCHHHHHH
T ss_conf 77530000004676447210057530000000111000000023122022
No 10
>PRK13984 putative oxidoreductase; Provisional
Probab=99.93 E-value=4.6e-27 Score=185.60 Aligned_cols=121 Identities=26% Similarity=0.555 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHCCCEEEEEECCCCCCCEECCCCHHHHHHCCCCCCCCCCCC-CCCEE
Q ss_conf 99999999999984069852257875775680005723787405887422134522325330883210122454-47335
Q gi|254780861|r 14 KEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCH-DGTRR 92 (163)
Q Consensus 14 ~~~~~gl~~t~k~~~~~~~T~~YP~e~~~~~~rfRG~~~l~~~~~~~ekCi~C~~C~~~CP~~aI~i~~~~~~~-~~~~~ 92 (163)
++||..++ .+|+||++|+|+.-|.++++.++||||+|. ||.||||||+.|+.+||.++|.|...+... .....
T Consensus 4 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~ekcigc~~c~~~cp~~~~~~v~~~~~~~~~~~~ 77 (604)
T PRK13984 4 KDFFAPLK-AWKNLFRKPVTIKVPNVKREAAERYRGFHI-----NDWEKCIGCGTCAKICPTDAITMVEVEDLPQEYGKK 77 (604)
T ss_pred CHHHHHHH-HHHHHCCCCEEEECCCCCCCCHHHHCCCCC-----CCHHHCCCCCCHHHHCCCCCEEEEECCCCCCCCCCC
T ss_conf 00113689-999861287552068756430155446533-----626552587525551898864899636766312457
Q ss_pred EEEEEEEHHHCCCCCCCHHHCCCCEEECCCCCCCCCCCHHHHCCCHHH
Q ss_conf 778885055558688723337831030367735675768773329999
Q gi|254780861|r 93 TVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKER 140 (163)
Q Consensus 93 ~~~~~id~~~Ci~Cg~Cv~vCP~~AI~~~~~~e~a~~~r~~l~~~k~~ 140 (163)
+.+..||+++|-+|++||++||++||+|+.+|-+.+.+++.+++-.+.
T Consensus 78 ~~~~~~~~~r~~~~~~cv~~c~t~~l~~~~e~~~~~~~~~~~~~~~~~ 125 (604)
T PRK13984 78 PQRPVIDYGRCSFCALCVDICTTGSLKMTREYIHISPDPEDFIFAPTE 125 (604)
T ss_pred CCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHCCCHHHHEECHHH
T ss_conf 666642347666338998657712778888776517785661323322
No 11
>PRK09623 vorD 2-ketoisovalerate ferredoxin oxidoreductase subunit delta; Reviewed
Probab=99.69 E-value=7.3e-18 Score=129.24 Aligned_cols=97 Identities=31% Similarity=0.519 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC---CCCCHHCCCEEEEEECCCCCCCEECCCCHHHHHHCCCCCCCCCCCC
Q ss_conf 9999999999999998406985225787577---5680005723787405887422134522325330883210122454
Q gi|254780861|r 11 LFLKEFVGAFFLCLRYFFKAKTTINYPFEKG---STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCH 87 (163)
Q Consensus 11 ~~~~~~~~gl~~t~k~~~~~~~T~~YP~e~~---~~~~rfRG~~~l~~~~~~~ekCi~C~~C~~~CP~~aI~i~~~~~~~ 87 (163)
+|...-=.+-++++|+ +.+||+.+. ...+++-|.....+---|+||||+|++|+.+||.+||.+...
T Consensus 4 ~~g~~~e~~~~~~~~~------~~~~p~~~~~~~~~~~n~tG~WR~~rPvvD~eKCi~Cg~C~~~CP~~AI~~~~d---- 73 (105)
T PRK09623 4 LFGKKKEEAKKIVLKS------VDEYPEAPISLGTTLVNFTGDWRTFIPVVDESKCVKCYICWKFCPEPAIYIKED---- 73 (105)
T ss_pred CCCCHHHHHHHHHHHH------HHHCCCCCCCCCCCCCCCCCCCEEECCCCCHHHCCCCCCHHHHCCCCCEEECCC----
T ss_conf 2131278899999999------987788777656503689986235247124625848513464709980897499----
Q ss_pred CCCEEEEEEEEEHHHCCCCCCCHHHCCCCEEECCCC
Q ss_conf 473357788850555586887233378310303677
Q gi|254780861|r 88 DGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 (163)
Q Consensus 88 ~~~~~~~~~~id~~~Ci~Cg~Cv~vCP~~AI~~~~~ 123 (163)
+ ...||+..|++||.|+++||++||+|.++
T Consensus 74 -g-----~~~ID~d~C~GCG~C~~~CP~~AI~mv~E 103 (105)
T PRK09623 74 -G-----YVAIDYDYCKGCGICANECPTKAITMEKE 103 (105)
T ss_pred -C-----CEEECHHHCCCHHHHHHHCCHHHHCCHHC
T ss_conf -8-----48868668928638877679977333014
No 12
>PRK09624 porD pyuvate ferredoxin oxidoreductase subunit delta; Reviewed
Probab=99.42 E-value=1.2e-13 Score=103.43 Aligned_cols=65 Identities=29% Similarity=0.659 Sum_probs=50.9
Q ss_pred CCHHCC-CEEEEEECCCCCCCEECCCCHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEHHHCCCCCCCHHHCCCCEEECCC
Q ss_conf 800057-2378740588742213452232533088321012245447335778885055558688723337831030367
Q gi|254780861|r 44 SPRFRG-EHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 (163)
Q Consensus 44 ~~rfRG-~~~l~~~~~~~ekCi~C~~C~~~CP~~aI~i~~~~~~~~~~~~~~~~~id~~~Ci~Cg~Cv~vCP~~AI~~~~ 122 (163)
...+|. +|.+ |.+|||+|++|+.+||.+||.+..+ +. ..||+..|++||.|+++||++||.|..
T Consensus 38 tg~wR~~rPvi-----d~dkCi~Cg~C~~~CP~~AI~~de~-----g~-----~~iD~d~C~GCG~Ca~~CP~~AI~mv~ 102 (105)
T PRK09624 38 TGSWRVFMPEF-----NRDKCVRCYLCYIYCPEPAIYLDEE-----GY-----PVFDYDYCKGCGICANECPTKAIEMVR 102 (105)
T ss_pred CCCCEEECCEE-----CHHHCCCCCCHHHHCCCCEEEECCC-----CC-----EEECHHHCCCCCHHHHHCCHHHHEEEE
T ss_conf 87863655387-----4426828212242509560798799-----88-----885765785705545257983611323
Q ss_pred C
Q ss_conf 7
Q gi|254780861|r 123 N 123 (163)
Q Consensus 123 ~ 123 (163)
+
T Consensus 103 E 103 (105)
T PRK09624 103 E 103 (105)
T ss_pred C
T ss_conf 1
No 13
>PRK09626 oorD 2-oxoglutarate-acceptor oxidoreductase subunit OorD; Reviewed
Probab=99.37 E-value=1.9e-13 Score=102.16 Aligned_cols=69 Identities=32% Similarity=0.619 Sum_probs=51.8
Q ss_pred CCCCCEECCCCHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEHHHCCCCCCCHHHCCCCEEECCC--CCCCCCCC
Q ss_conf 8742213452232533088321012245447335778885055558688723337831030367--73567576
Q gi|254780861|r 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP--NFEFATET 130 (163)
Q Consensus 59 ~~ekCi~C~~C~~~CP~~aI~i~~~~~~~~~~~~~~~~~id~~~Ci~Cg~Cv~vCP~~AI~~~~--~~e~a~~~ 130 (163)
|+++|+||++|+.+||.++|.|........|.... .+|..+|++||+|+.+||..||+.-+ +|-++..+
T Consensus 14 de~~C~gC~~Cv~~CP~~~l~m~~d~~~~~G~~~~---vv~pe~CIgCG~Ce~~CPd~AI~Va~r~~~~~~k~~ 84 (103)
T PRK09626 14 DESRCKACDICVSYCPAGVLAMRIEPHAVLGKMIE---VVYPESCIGCRECELHCPDFAIYVADRKEFKFAKLS 84 (103)
T ss_pred CCCCCCCCCHHHHHCCHHHHHHCCCCCCCCCCCCC---CCCHHHCCCCCHHHHHCCHHHEEEECCCCCCHHHHC
T ss_conf 40107771288887776564324564434565422---168335838275755488232897404567300107
No 14
>TIGR01944 rnfB electron transport complex, RnfABCDGE type, B subunit; InterPro: IPR010207 The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in Escherichia coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This entry describes the B subunit.; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding, 0006118 electron transport.
Probab=99.35 E-value=1.3e-13 Score=103.28 Aligned_cols=58 Identities=36% Similarity=0.716 Sum_probs=43.6
Q ss_pred CCCCCEECCCCHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEHHHCCCCCCCHHHCCCCEEECCCCCCC
Q ss_conf 87422134522325330883210122454473357788850555586887233378310303677356
Q gi|254780861|r 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEF 126 (163)
Q Consensus 59 ~~ekCi~C~~C~~~CP~~aI~i~~~~~~~~~~~~~~~~~id~~~Ci~Cg~Cv~vCP~~AI~~~~~~e~ 126 (163)
+|+.||||..|.++||+|||. + +.|.+.. .=..-|++|.+|++.||||+|.|.+.-+.
T Consensus 123 ~E~~CIGCTKCiqaCPVDAIV------G--a~k~mHT--Vi~d~CTGCdLCv~pCPtdCI~~~p~~~~ 180 (213)
T TIGR01944 123 DEENCIGCTKCIQACPVDAIV------G--AAKAMHT--VIADECTGCDLCVEPCPTDCIEMRPVPET 180 (213)
T ss_pred ECCCCCCCCCCCCCCCCCCCC------C--CCCHHHH--HHHHHCCCCCCCCCCCCCCCCCCEECCCC
T ss_conf 367684854223458853010------6--7860301--25643578322245769674301136888
No 15
>PRK06991 ferredoxin; Provisional
Probab=99.33 E-value=1.7e-12 Score=96.39 Aligned_cols=56 Identities=36% Similarity=0.690 Sum_probs=44.5
Q ss_pred CCCCCEECCCCHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEHHHCCCCCCCHHHCCCCEEECCCCC
Q ss_conf 874221345223253308832101224544733577888505555868872333783103036773
Q gi|254780861|r 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124 (163)
Q Consensus 59 ~~ekCi~C~~C~~~CP~~aI~i~~~~~~~~~~~~~~~~~id~~~Ci~Cg~Cv~vCP~~AI~~~~~~ 124 (163)
+++.||||.+|..+||++||.-... .+ .++....|++|++|+.+||+|+|.|.+.-
T Consensus 83 dE~~CIGCT~CI~aCPVDAIvGA~k--------~m--HtVi~d~CTGCeLCI~pCPvDCI~MvPv~ 138 (274)
T PRK06991 83 DEQLCIGCTLCMQACPVDAIVGAPK--------QM--HTVVADLCTGCDLCVPPCPVDCIDMVPVT 138 (274)
T ss_pred CCCCCCCCHHHHHCCCCHHEECCCC--------CC--EEECHHHCCCCCCCCCCCCCCCEEEEECC
T ss_conf 5887817203431198001552677--------66--16564218996724566983201544458
No 16
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.31 E-value=3.1e-13 Score=100.93 Aligned_cols=64 Identities=28% Similarity=0.630 Sum_probs=51.7
Q ss_pred CCCCCEECCCCHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEHHHCCCCC------CCHHHCCCCEEECCCCCCCCC
Q ss_conf 8742213452232533088321012245447335778885055558688------723337831030367735675
Q gi|254780861|r 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG------LCQEACPVDAIVEGPNFEFAT 128 (163)
Q Consensus 59 ~~ekCi~C~~C~~~CP~~aI~i~~~~~~~~~~~~~~~~~id~~~Ci~Cg------~Cv~vCP~~AI~~~~~~e~a~ 128 (163)
+.+|||||+.|+.+||.+||.|...+...... ..+..+|-+|+ .||++||++||+|++++.+..
T Consensus 83 ~~~~cigc~~c~~acp~ga~~~v~~~~~~~~~------~~~a~kcdlc~~~~~gpacv~~cpt~al~l~~~~~~~~ 152 (654)
T PRK12769 83 NQQKCIGCKSCVVACPFGTMQIVLTPVAPGKV------KATAHKCDLCAGRENGPACVENCPADALQLVTDQALSG 152 (654)
T ss_pred ECCCCCCCCCHHHCCCCCCEEEEECCCCCCCC------CCCCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHC
T ss_conf 31216686216650898854999636777765------54445575335877785077657643543322556542
No 17
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.29 E-value=3.5e-13 Score=100.56 Aligned_cols=60 Identities=23% Similarity=0.491 Sum_probs=51.5
Q ss_pred CCCCCEECCCCHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEHHHCCCCCCCHHHCCCCEEECCCCCCC
Q ss_conf 87422134522325330883210122454473357788850555586887233378310303677356
Q gi|254780861|r 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEF 126 (163)
Q Consensus 59 ~~ekCi~C~~C~~~CP~~aI~i~~~~~~~~~~~~~~~~~id~~~Ci~Cg~Cv~vCP~~AI~~~~~~e~ 126 (163)
+.+|||||+.|+.+||.+||.|.... ..+.++++++|.+|+.||++||++||+|+++--+
T Consensus 83 ~~~~cigc~~c~~~cp~~a~~~~~~~--------~~k~~~~~~r~~~~~~cv~~c~t~al~~~~~~~~ 142 (639)
T PRK12809 83 DEQKCIGCKRCAIACPFGVVEMVDTI--------AQKCDLCNQRSSGTQACIEVCPTQALRLMDDKGL 142 (639)
T ss_pred ECCCCCCCCCHHHHCCCCCEEEEECC--------CCCCCCCCCCCCCHHHHHHHCCHHHHHHCCCCCH
T ss_conf 50326686324541898853888635--------6467656788663368986586655311035343
No 18
>PRK05113 electron transport complex protein RnfB; Provisional
Probab=99.27 E-value=1.7e-12 Score=96.32 Aligned_cols=57 Identities=33% Similarity=0.645 Sum_probs=47.0
Q ss_pred CCCCCEECCCCHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEHHHCCCCCCCHHHCCCCEEECCCCCC
Q ss_conf 8742213452232533088321012245447335778885055558688723337831030367735
Q gi|254780861|r 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 (163)
Q Consensus 59 ~~ekCi~C~~C~~~CP~~aI~i~~~~~~~~~~~~~~~~~id~~~Ci~Cg~Cv~vCP~~AI~~~~~~e 125 (163)
+++.||||+.|+++||.+||.+..... ..+|..+|+.||.|+++||+++|.|.+.-.
T Consensus 111 ~~~~CiGcg~Cv~~CP~dAI~~~~~~~----------~~V~~d~C~gCg~Cv~~CP~~~I~lvP~~~ 167 (184)
T PRK05113 111 DEDNCIGCTKCIQACPVDAIVGATKAM----------HTVISDLCTGCDLCVAPCPTDCIEMIPVAE 167 (184)
T ss_pred CCCCCCCCCHHHHHCCCCCEECCCCCC----------EEECHHHCCCCCHHHHHCCCCCEEEEECCC
T ss_conf 652488868112019946277689988----------697864680835254655867368876888
No 19
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase; InterPro: IPR011895 The oxidative decarboxylation of pyruvate to acetyl-CoA, a central step in energy metabolism, can occur by two different mechanisms . In mitochondria and aerobic bacteria this reaction is catalysed by the multienzyme complex pyruvate dehydrogenase using NAD as electron acceptor. In anaerobic organisms, however, this reaction is reversibly catalysed by a single enzyme using either ferrodoxin or flavodoxin as the electron acceptor. Pyruvate:ferrodoxin/flavodoxin reductases (PFORs) in this entry occur in both obligately and facultatively anaerobic bacteria and also some eukaryotic microorganisms. These proteins are single-chain enzymes containing a thiamin pyrophosphate cofactor for the cleavage of carbon-carbon bonds next to a carbonyl group, and iron-sulphur clusters for electron transfer. The Desulfovibrio africanus enzyme is currently the only PFOR whose three dimensional structure is known , . It is a homodimer where each subunit contains one thiamin pyrophosphate cofactor and two ferrodoxin-like 4Fe-S clusters and an atypical 4Fe-S cluster. Each monomer is composed of seven domains - domains I, II and VI make intersubunit contacts, while domains III, IV and V are located at the suface of the dimer, and domain VII forms a long arm extending over the other subunit. The cofactor is bound at the interface of domains I and VI and is proximal to the atypical 4Fe-S bound by domain VI, while the ferrodoxin-like 4Fe-S clusters are bound by domain V. Comparison of this enzyme with the multi-chain PFORs shows a correspondance between the domains in this enzyme and the subunits of the multi-chain enzymes.; GO: 0005506 iron ion binding, 0016903 oxidoreductase activity acting on the aldehyde or oxo group of donors, 0006118 electron transport.
Probab=99.26 E-value=1.1e-12 Score=97.58 Aligned_cols=80 Identities=31% Similarity=0.622 Sum_probs=53.8
Q ss_pred CCCCEECCCCHHHHHHCCCCCCCCC-----CCCC--------CC---EEEEEEEEEHHHCCCCCCCHHHCCCC-------
Q ss_conf 7422134522325330883210122-----4544--------73---35778885055558688723337831-------
Q gi|254780861|r 60 EERCIACKLCEAICPAQAITIESGP-----RCHD--------GT---RRTVRYDIDMIKCIYCGLCQEACPVD------- 116 (163)
Q Consensus 60 ~ekCi~C~~C~~~CP~~aI~i~~~~-----~~~~--------~~---~~~~~~~id~~~Ci~Cg~Cv~vCP~~------- 116 (163)
-|+||-|++|+-|||.-||.+.-.+ +.+. |+ ....+.+|+..+|++||+||++||..
T Consensus 698 ~d~CiqCnqCa~VCPHaaIR~~l~~~ee~~~AP~~F~~~d~kGK~~~g~kyrIQvs~~DCtGCglCvd~CPa~~K~~~~~ 777 (1194)
T TIGR02176 698 SDNCIQCNQCAFVCPHAAIRPFLLDEEELEKAPEGFKSLDAKGKELEGLKYRIQVSVEDCTGCGLCVDICPAKDKEVEEG 777 (1194)
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHCCCHHHHCCCCCCEEECCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 56653478854337647877764271576358986477134367889870068742750357634203585888888876
Q ss_pred -EEECCCCCCCCCCCHHHHCCCHHHHHH
Q ss_conf -030367735675768773329999988
Q gi|254780861|r 117 -AIVEGPNFEFATETRQELYYDKERLLN 143 (163)
Q Consensus 117 -AI~~~~~~e~a~~~r~~l~~~k~~Ll~ 143 (163)
||.|.+. ...||+-..|-+..+.
T Consensus 778 KAL~M~p~----~e~~e~e~~Nw~f~~~ 801 (1194)
T TIGR02176 778 KALVMKPL----EEQREEESANWEFAIN 801 (1194)
T ss_pred CCCCCCCC----CHHHHHHHHHHHHHHH
T ss_conf 53036763----1126788788999973
No 20
>TIGR02179 PorD_KorD 2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate family; InterPro: IPR011898 A number of anaerobic and microaerophilic species lack pyruvate dehydrogenase and have instead a four subunit, oxygen-sensitive pyruvate oxidoreductase, with either ferredoxins or flavodoxins used as the acceptor. Several related four-subunit enzymes may exist in the same species. This entry describes the delta subunits, representing mostly pyruvate, 2-ketoisovalerate, and 2-oxoglutarate specific enzymes. The delta subunit is the smallest and resembles ferredoxins.; GO: 0016625 oxidoreductase activity acting on the aldehyde or oxo group of donors iron-sulfur protein as acceptor, 0051539 4 iron 4 sulfur cluster binding, 0006118 electron transport.
Probab=99.21 E-value=2.5e-12 Score=95.37 Aligned_cols=58 Identities=41% Similarity=0.863 Sum_probs=47.2
Q ss_pred CCCCCEECCCCHHHHHHC-CCCCCCCCCCCCCCEEEEEEEEEHHHCCCCCCCHHHCCCC--EEECCCC
Q ss_conf 874221345223253308-8321012245447335778885055558688723337831--0303677
Q gi|254780861|r 59 GEERCIACKLCEAICPAQ-AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD--AIVEGPN 123 (163)
Q Consensus 59 ~~ekCi~C~~C~~~CP~~-aI~i~~~~~~~~~~~~~~~~~id~~~Ci~Cg~Cv~vCP~~--AI~~~~~ 123 (163)
++||||.|++|...||-+ +|....+ + ....+.|||.-|-+||.|+++||++ ||.|..|
T Consensus 23 ~~~KC~~C~~C~~YCPe~~~I~~~e~-----~--~~~~~~iDYdYCKGCGiCA~vCP~kPkAI~Mv~E 83 (84)
T TIGR02179 23 DKEKCIKCKLCWLYCPEGAAIQEDEG-----G--DEKKVEIDYDYCKGCGICANVCPVKPKAIEMVRE 83 (84)
T ss_pred CCCCCCCCCCEEEECCCCCEEECCCC-----C--EEEEEEECCCCCCCCEEECCCCCCCCCEEEEEEC
T ss_conf 03453566403887699747761589-----3--2677676487378751502748658850244626
No 21
>COG3383 Uncharacterized anaerobic dehydrogenase [General function prediction only]
Probab=99.20 E-value=4.1e-12 Score=94.04 Aligned_cols=83 Identities=30% Similarity=0.616 Sum_probs=60.0
Q ss_pred CCCCCCCCC-CCCCHHCCCEEEEEECCCCCCCEECCCCHHHHH----HCCCCCCCCCCCCCCCEEEE--EEEEEHHHCCC
Q ss_conf 225787577-568000572378740588742213452232533----08832101224544733577--88850555586
Q gi|254780861|r 33 TINYPFEKG-STSPRFRGEHALRRYPNGEERCIACKLCEAICP----AQAITIESGPRCHDGTRRTV--RYDIDMIKCIY 105 (163)
Q Consensus 33 T~~YP~e~~-~~~~rfRG~~~l~~~~~~~ekCi~C~~C~~~CP----~~aI~i~~~~~~~~~~~~~~--~~~id~~~Ci~ 105 (163)
-..||+++. +..+.-+..|+++.||+ +||.|+.|+++|. +.+|.+++....+ +... .-.|+.+.|..
T Consensus 123 ~q~y~y~~k~~~~~~Des~Pfy~ydp~---qCIlCgRCVeaCqevqv~eaL~i~w~~~~p---RV~wd~~~~i~~SSCVs 196 (978)
T COG3383 123 EQRYPYEEKNPPYPKDESNPFYIYDPN---QCILCGRCVEACQEVQVNEALTIDWRGEDP---RVIWDNDVPINESSCVS 196 (978)
T ss_pred CCCCCCCCCCCCCCCCCCCCEEEECCH---HEEEHHHHHHHHHHHHCEEEEEEECCCCCC---CEECCCCCCCCCCCCCC
T ss_conf 433676655788875567970875622---424256899998764133699861146776---03347897553012554
Q ss_pred CCCCHHHCCCCEEECC
Q ss_conf 8872333783103036
Q gi|254780861|r 106 CGLCQEACPVDAIVEG 121 (163)
Q Consensus 106 Cg~Cv~vCP~~AI~~~ 121 (163)
||.||+|||++||...
T Consensus 197 CG~CvtVCP~nALmek 212 (978)
T COG3383 197 CGACVTVCPVNALMEK 212 (978)
T ss_pred CCCCCEECCHHHHHHH
T ss_conf 5760201560564312
No 22
>TIGR03048 PS_I_psaC photosystem I iron-sulfur protein PsaC. Members of this family are PsaC, an essential component of photosystem I (PS-I) reaction center in Cyanobacteria and chloroplasts. This small protein, about 80 amino acids in length, contains two copies of the ferredoxin-like 4Fe-4S binding site (pfam00037) and therefore eight conserved Cys residues. This protein is also called photosystem I subunit VII.
Probab=99.20 E-value=3.4e-12 Score=94.54 Aligned_cols=57 Identities=26% Similarity=0.715 Sum_probs=42.2
Q ss_pred CCCEECCCCHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEHHHCCCCCCCHHHCCCCEEEC
Q ss_conf 422134522325330883210122454473357788850555586887233378310303
Q gi|254780861|r 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 (163)
Q Consensus 61 ekCi~C~~C~~~CP~~aI~i~~~~~~~~~~~~~~~~~id~~~Ci~Cg~Cv~vCP~~AI~~ 120 (163)
++||||++|+++||.++|.|.+.+....+.... .....+|++||.|+.+||++||+.
T Consensus 8 D~CIgC~~CvrvCPt~vieMVp~dg~~~~q~~~---~~RtedCIGC~~CE~aCPtdaLsi 64 (80)
T TIGR03048 8 DTCIGCTQCVRACPTDVLEMVPWDGCKAGQIAS---APRTEDCVGCKRCESACPTDFLSV 64 (80)
T ss_pred CCCCCCHHHHHHCCCCCEEECCCCCCCCCCCCC---CCCCCCCCCCCHHHHCCCCCCCEE
T ss_conf 406680466865884514522466654464557---886100556213443089873135
No 23
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family; InterPro: IPR014073 This entry describes one of two paralogous families of archaeal flavoprotein. The other, described by IPR014072 from INTERPRO and typified by the partially characterised AF1518 of ArchaArchaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown..
Probab=99.19 E-value=3e-12 Score=94.83 Aligned_cols=77 Identities=29% Similarity=0.684 Sum_probs=58.7
Q ss_pred CCCHHCCCEEEEEEC--CCCCCCEECCCCHH--HHHHCCCCCCCCCCCCCCCEEEEEEEEEHHHCCCCCCCHHHCCCCEE
Q ss_conf 680005723787405--88742213452232--53308832101224544733577888505555868872333783103
Q gi|254780861|r 43 TSPRFRGEHALRRYP--NGEERCIACKLCEA--ICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 (163)
Q Consensus 43 ~~~rfRG~~~l~~~~--~~~ekCi~C~~C~~--~CP~~aI~i~~~~~~~~~~~~~~~~~id~~~Ci~Cg~Cv~vCP~~AI 118 (163)
+|--|.+-..-+..| -|+++|-+|..|.. +||.+||.+..+... +|++.+|.+||.|.++||-+||
T Consensus 128 VPvDye~gii~T~~PY~idrk~Ck~C~~C~~re~CP~~AI~~~dg~~d----------~I~LlkC~GCG~Cke~CPynAI 197 (237)
T TIGR02700 128 VPVDYEEGIISTKLPYAIDRKKCKLCEKCVDREACPREAISKKDGVVD----------EIRLLKCVGCGKCKEVCPYNAI 197 (237)
T ss_pred EEEECCCCEEEEECCHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCC----------EEEEEECCCCCCCCCCCCHHHH
T ss_conf 875214776652076156687412478898734577113341078101----------1100102478875335854450
Q ss_pred ECCCCCCCCCC
Q ss_conf 03677356757
Q gi|254780861|r 119 VEGPNFEFATE 129 (163)
Q Consensus 119 ~~~~~~e~a~~ 129 (163)
.-+.++|+-.-
T Consensus 198 ~gG~e~e~rVR 208 (237)
T TIGR02700 198 KGGKEVEMRVR 208 (237)
T ss_pred CCCCEEEEEEE
T ss_conf 17801699885
No 24
>PRK08318 dihydropyrimidine dehydrogenase; Validated
Probab=99.18 E-value=1.3e-11 Score=90.99 Aligned_cols=56 Identities=36% Similarity=0.841 Sum_probs=45.9
Q ss_pred CCCCCEECCCCHHHH---HHCCCCCCCCCCCCCCCEEEEEEEEEHHHCCCCCCCHHHCCC-CEEECCCC
Q ss_conf 874221345223253---308832101224544733577888505555868872333783-10303677
Q gi|254780861|r 59 GEERCIACKLCEAIC---PAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV-DAIVEGPN 123 (163)
Q Consensus 59 ~~ekCi~C~~C~~~C---P~~aI~i~~~~~~~~~~~~~~~~~id~~~Ci~Cg~Cv~vCP~-~AI~~~~~ 123 (163)
|+++||+||+|..+| +.+||.+..+ ++. +.+|-..|++||+|+.+||+ +||+|.+.
T Consensus 340 ~~~~Ci~Cg~C~~~C~d~~~qai~~~~~------~~~---~~v~~~~C~gC~LC~~vCPv~~~i~m~~~ 399 (413)
T PRK08318 340 DQDKCIGCGRCYIACEDTSHQAIEWDDG------TRT---PEVNDEECVGCNLCAHVCPVEGCITMGEV 399 (413)
T ss_pred CHHHCCCCCCEEEEECCCCEEEEEECCC------CCC---EEECCCCCCCCCCCCCCCCCCCCEEEEEC
T ss_conf 7313899888444616787220686288------873---26676647986770201897676576566
No 25
>PRK09898 hypothetical protein; Provisional
Probab=99.15 E-value=7.5e-12 Score=92.40 Aligned_cols=25 Identities=32% Similarity=0.716 Sum_probs=15.0
Q ss_pred EEHHHCCCCCCCHHHCCCCEEECCC
Q ss_conf 5055558688723337831030367
Q gi|254780861|r 98 IDMIKCIYCGLCQEACPVDAIVEGP 122 (163)
Q Consensus 98 id~~~Ci~Cg~Cv~vCP~~AI~~~~ 122 (163)
+|..+||+|+.|+.+||.+++.+..
T Consensus 151 ~d~~~CigC~~C~~aCP~~~~~~~~ 175 (208)
T PRK09898 151 VDHKRCIGCSACTTACPWMMATVNT 175 (208)
T ss_pred EEHHHCCCCCHHHHHCCCCCCEECC
T ss_conf 8777680411899739999857678
No 26
>PRK09625 porD pyruvate flavodoxin oxidoreductase subunit delta; Reviewed
Probab=99.14 E-value=9.9e-12 Score=91.67 Aligned_cols=56 Identities=25% Similarity=0.633 Sum_probs=46.3
Q ss_pred CCCCCEECCCCHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEHHHCCCCCCCHHHCCCC--EEECCCCC
Q ss_conf 8742213452232533088321012245447335778885055558688723337831--03036773
Q gi|254780861|r 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD--AIVEGPNF 124 (163)
Q Consensus 59 ~~ekCi~C~~C~~~CP~~aI~i~~~~~~~~~~~~~~~~~id~~~Ci~Cg~Cv~vCP~~--AI~~~~~~ 124 (163)
+.++||.|++|...||.++|.+..+. .+.|||..|.+||.|+++||++ ||.|-+++
T Consensus 54 d~ekCi~C~~Cw~yCPD~aI~~~~~k----------~~~iDYdyCKGCGICa~vCP~~~k~l~m~~~~ 111 (130)
T PRK09625 54 NNDICINCFNCWVYCPDASILSRDKK----------LKGVDYSHCKGCGVCVDVCPTNPKSLLMFEEQ 111 (130)
T ss_pred CHHHCCCCCHHHCCCCCCEEEEECCE----------EEEECHHHCCCCCHHHHHCCCCCCEEEECCHH
T ss_conf 75358972300030898378823891----------35657677006221465479996024741222
No 27
>PRK09477 napH quinol dehydrogenase membrane component; Provisional
Probab=99.13 E-value=1.3e-11 Score=91.01 Aligned_cols=64 Identities=20% Similarity=0.526 Sum_probs=45.3
Q ss_pred CCCCCCEECCCCHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEHHHCCCCCCCHHHCCCCEEECCCCCCCC
Q ss_conf 8874221345223253308832101224544733577888505555868872333783103036773567
Q gi|254780861|r 58 NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127 (163)
Q Consensus 58 ~~~ekCi~C~~C~~~CP~~aI~i~~~~~~~~~~~~~~~~~id~~~Ci~Cg~Cv~vCP~~AI~~~~~~e~a 127 (163)
.|.++|+.|+.|+++||.+.. +.......+++ ..++.+.||.||.|+|+||.+|+.++..+...
T Consensus 221 ~~~~~C~~C~~C~~VCP~~~v-ir~~l~~~~~~-----~~v~~~eCI~CG~CIDvC~~~al~f~~r~~~~ 284 (287)
T PRK09477 221 HDREKCTRCMDCFHVCPEPQV-LRPPLKGKQSS-----PQVLSGDCTTCGRCIDVCSEDVFNFTIRFKSG 284 (287)
T ss_pred CCCCCCCCCCHHHHHCCCCCC-CCHHHCCCCCC-----CCCCCCCCCCHHHHHHHHCCCCEEEEEECCCC
T ss_conf 788758092357675799542-44443144446-----88488310536599967181551544212788
No 28
>CHL00065 psaC photosystem I subunit VII
Probab=99.13 E-value=1e-11 Score=91.63 Aligned_cols=67 Identities=24% Similarity=0.540 Sum_probs=44.9
Q ss_pred CCCEECCCCHHHHHHCCCCCCCCCCCCCCCEEEEE-EEEEHHHCCCCCCCHHHCCCCEEECCCCCCCCCCCHH
Q ss_conf 42213452232533088321012245447335778-8850555586887233378310303677356757687
Q gi|254780861|r 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR-YDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132 (163)
Q Consensus 61 ekCi~C~~C~~~CP~~aI~i~~~~~~~~~~~~~~~-~~id~~~Ci~Cg~Cv~vCP~~AI~~~~~~e~a~~~r~ 132 (163)
+.||||++|+++||.++|.|++.. |.+.... ......+|++||+|+.+||++||+.- .|+-+..+|+
T Consensus 9 D~CiGC~~Cvr~CP~dviemvp~d----g~k~~q~~~~~R~EdCiGC~~Ce~aCPtdalS~r-~~~g~e~~rs 76 (81)
T CHL00065 9 DTCIGCTQCVRACPTDVLEMIPWD----GCKAKQIASAPRTEDCVGCKRCESACPTDFLSVR-VYLGHETTRS 76 (81)
T ss_pred EECCCHHHHHHHCCCCHHHCCCCC----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE-EECCCHHHHH
T ss_conf 343685789886883010012344----5554533566761327666535355899861689-9617311011
No 29
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=99.12 E-value=2.7e-11 Score=89.04 Aligned_cols=51 Identities=33% Similarity=0.817 Sum_probs=41.6
Q ss_pred CCEECCCCHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEHHHCCCCCCCHHHCCCCEEECC
Q ss_conf 221345223253308832101224544733577888505555868872333783103036
Q gi|254780861|r 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 (163)
Q Consensus 62 kCi~C~~C~~~CP~~aI~i~~~~~~~~~~~~~~~~~id~~~Ci~Cg~Cv~vCP~~AI~~~ 121 (163)
.|+.|+.|+.+||.+||... .+|. .+.+|..+|+.||+|+.+||++||.|.
T Consensus 507 ~C~~C~~Cv~vCP~~ai~~~-----~~g~----~~~~d~~~Ci~CG~C~~~CP~gai~M~ 557 (560)
T PRK12771 507 NCFECDNCYGFCPQDAVIKL-----GKGR----RVETDYDKCTGCHICSDVCPTGYIEMG 557 (560)
T ss_pred CCCCCCCHHHHCCCCCCCCC-----CCCC----EEEECHHHCCCCCCHHHHCCCCCCCCC
T ss_conf 82164657552843210246-----7886----377482246674621422898730267
No 30
>PRK07118 ferredoxin; Validated
Probab=99.11 E-value=2e-11 Score=89.82 Aligned_cols=50 Identities=42% Similarity=0.818 Sum_probs=41.7
Q ss_pred CEECCCCHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEHHHCCCCCCCHHHCCCCEEECCCC
Q ss_conf 2134522325330883210122454473357788850555586887233378310303677
Q gi|254780861|r 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 (163)
Q Consensus 63 Ci~C~~C~~~CP~~aI~i~~~~~~~~~~~~~~~~~id~~~Ci~Cg~Cv~vCP~~AI~~~~~ 123 (163)
||||+.|+++||.+||+++. |. + .||..+|++||.|+++||+++|.|.+.
T Consensus 141 CiGcg~Cv~~CP~dAI~~~~------g~--~---~Vd~~~C~~Cg~C~~~CP~~~I~~~p~ 190 (276)
T PRK07118 141 CLGLGSCVAACPFDAIHIEN------GL--P---VVDEEKCTGCGACVKACPKNVIELIPK 190 (276)
T ss_pred CCCCCCHHHHCCCCCEEEEC------CC--E---EEEHHHCCCCCHHHHHCCHHHHHCCCC
T ss_conf 89688004228988468318------97--8---971656888460444647557631766
No 31
>COG1144 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, delta subunit [Energy production and conversion]
Probab=99.09 E-value=3e-11 Score=88.71 Aligned_cols=57 Identities=42% Similarity=0.808 Sum_probs=46.8
Q ss_pred CCCCCCEECCCCHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEHHHCCCCCCCHHHCCCCEEECCCC
Q ss_conf 887422134522325330883210122454473357788850555586887233378310303677
Q gi|254780861|r 58 NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 (163)
Q Consensus 58 ~~~ekCi~C~~C~~~CP~~aI~i~~~~~~~~~~~~~~~~~id~~~Ci~Cg~Cv~vCP~~AI~~~~~ 123 (163)
.+++|||.|++|..-||-++|....+. .... |||..|-+||.|+++||++||.|..+
T Consensus 32 ~d~~kCi~C~~C~~yCPe~~i~~~~~~-----~~~~----idYdyCKGCGICa~vCP~kaI~Mv~E 88 (91)
T COG1144 32 VDEDKCINCKLCWLYCPEPAILEEEGG-----YKVR----IDYDYCKGCGICANVCPVKAIEMVRE 88 (91)
T ss_pred ECCHHCCCCCEEEEECCCHHEEECCCC-----CCCE----EECCCCCCCEECHHHCCHHHEEEEEE
T ss_conf 741000268635898794005601587-----3120----47560467664030388626376750
No 32
>PRK07118 ferredoxin; Validated
Probab=99.08 E-value=1.6e-11 Score=90.38 Aligned_cols=64 Identities=28% Similarity=0.630 Sum_probs=35.5
Q ss_pred CCCCCEECCCCHHHHHHCCCCCCCCCCCC-----CCCEEEEEEEEEHHHCCCCCCCHHHCCCCEEECCC
Q ss_conf 87422134522325330883210122454-----47335778885055558688723337831030367
Q gi|254780861|r 59 GEERCIACKLCEAICPAQAITIESGPRCH-----DGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 (163)
Q Consensus 59 ~~ekCi~C~~C~~~CP~~aI~i~~~~~~~-----~~~~~~~~~~id~~~Ci~Cg~Cv~vCP~~AI~~~~ 122 (163)
|.++|++|++|+.+||.++|.+....... ...+........-..||.|+.|+.+||.+||++.+
T Consensus 166 d~~~C~~Cg~C~~~CP~~~I~~~p~~~~~~V~C~s~dkg~~v~~~C~~gCIgC~~C~k~CP~~AI~ie~ 234 (276)
T PRK07118 166 DEEKCTGCGACVKACPKNVIELIPKSARVFVACNSKDKGKAVKKVCEVGCIGCGKCVKACPAEAITVEN 234 (276)
T ss_pred EHHHCCCCCHHHHHCCHHHHHCCCCCCCEEEECCCCCCHHHHHHHHCCCCCCCHHHHHHCCCCCEEEEC
T ss_conf 165688846044464755763176666247754566533778863012586627888758826499769
No 33
>PRK08764 ferredoxin; Provisional
Probab=99.05 E-value=4.8e-11 Score=87.50 Aligned_cols=54 Identities=37% Similarity=0.680 Sum_probs=43.9
Q ss_pred CCCCCEECCCCHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEHHHCCCCCCCHHHCCCCEEECCC
Q ss_conf 8742213452232533088321012245447335778885055558688723337831030367
Q gi|254780861|r 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 (163)
Q Consensus 59 ~~ekCi~C~~C~~~CP~~aI~i~~~~~~~~~~~~~~~~~id~~~Ci~Cg~Cv~vCP~~AI~~~~ 122 (163)
+++.||||+.|+++||.+||.+..... ..+|..+|+.||+|+.+||+++|.|.+
T Consensus 84 ~~~~CiGcg~Ci~aCpfDAI~~~~~~~----------~~V~~~~CtGCg~Cv~~CP~~~I~l~P 137 (138)
T PRK08764 84 VEADCIGCTKCIQACPVDAIVGGAKHM----------HTVIAPLCTGCELCVPACPVDCIELHP 137 (138)
T ss_pred ECCCCCCCCHHHHHCCCCCEECCCCCC----------EEECHHHCCCCCHHHHHCCCCHHEECC
T ss_conf 268887739787419955175588888----------265865687835655646713310612
No 34
>PRK08493 NADH dehydrogenase subunit G; Validated
Probab=99.05 E-value=1.1e-10 Score=85.21 Aligned_cols=83 Identities=22% Similarity=0.511 Sum_probs=49.2
Q ss_pred CCCCCCCCCCCCCHHCCCEEEEEECCCCCCCEECCCCHHHHH----HCCCCCCCCCCCCCC-------------------
Q ss_conf 225787577568000572378740588742213452232533----088321012245447-------------------
Q gi|254780861|r 33 TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP----AQAITIESGPRCHDG------------------- 89 (163)
Q Consensus 33 T~~YP~e~~~~~~rfRG~~~l~~~~~~~ekCi~C~~C~~~CP----~~aI~i~~~~~~~~~------------------- 89 (163)
...|+.++...|...-+ .+.+| .++||.|+.|+++|- .++|.+.. ++.+.
T Consensus 118 ~~~~~~~~~~~~~~~~~--~~~~d---~~~CI~C~rCVr~C~ev~g~~~l~~~~--rG~~~~~~~~~~~~~~d~~~~~~~ 190 (819)
T PRK08493 118 HQKYAIKDTHKPHKSWG--KINYD---PSLCIVCERCVTVCKDKIGESALKTVP--RGLDAVDKSFKESMPKDAYAVWSK 190 (819)
T ss_pred CCCCCCCCCCCCCCCCC--CEEEC---CCCCCCCCHHHHHHHHHHCCCEEEEEC--CCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 87787667777567888--46644---131740768999988761863366513--676443342234344321001243
Q ss_pred --CEEEEEEEEEHHHCCCCCCCHHHCCCCEEECCC
Q ss_conf --335778885055558688723337831030367
Q gi|254780861|r 90 --TRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 (163)
Q Consensus 90 --~~~~~~~~id~~~Ci~Cg~Cv~vCP~~AI~~~~ 122 (163)
+........+...|.+||.||++||++||...+
T Consensus 191 ~~~~~i~~~~~~~~~C~~CG~Cv~vCP~GAL~~k~ 225 (819)
T PRK08493 191 KQKSLIGPVGGETLDCSFCGECIAVCPVGALSSSD 225 (819)
T ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCC
T ss_conf 44321135678876770114257539753253665
No 35
>PRK02651 photosystem I subunit VII; Provisional
Probab=99.03 E-value=4.1e-11 Score=87.87 Aligned_cols=57 Identities=25% Similarity=0.615 Sum_probs=41.3
Q ss_pred CCCEECCCCHHHHHHCCCCCCCCCCCCCCCEEEEEEEE-EHHHCCCCCCCHHHCCCCEEECC
Q ss_conf 42213452232533088321012245447335778885-05555868872333783103036
Q gi|254780861|r 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI-DMIKCIYCGLCQEACPVDAIVEG 121 (163)
Q Consensus 61 ekCi~C~~C~~~CP~~aI~i~~~~~~~~~~~~~~~~~i-d~~~Ci~Cg~Cv~vCP~~AI~~~ 121 (163)
++||||++|+++||.+++.|++.. |.+....... ...+||+|+.|+.+||++||+.-
T Consensus 9 D~CIgC~qCV~~CPt~VleMvp~~----g~k~~q~~~~pR~edCIGCk~Ce~aCPtd~lsir 66 (81)
T PRK02651 9 DTCIGCTQCVRACPLDVLEMVPWD----GCKAGQIASSPRTEDCVGCKRCETACPTDFLSIR 66 (81)
T ss_pred CCCCCHHHHHHHCCCCCEEECCCC----CCCCCCCCCCCCHHHCCCHHHHHHCCCCCCEEEE
T ss_conf 313674566865887603642467----7613502258845433351446630899850478
No 36
>PRK07569 bidirectional hydrogenase complex protein HoxU; Validated
Probab=99.00 E-value=2.1e-10 Score=83.61 Aligned_cols=66 Identities=24% Similarity=0.547 Sum_probs=44.4
Q ss_pred CEEEEEECCCCCCCEECCCCHHHHH----HCCCCCCCCCCCCCCCEEEEEEEE---EHHHCCCCCCCHHHCCCCEEECC
Q ss_conf 2378740588742213452232533----088321012245447335778885---05555868872333783103036
Q gi|254780861|r 50 EHALRRYPNGEERCIACKLCEAICP----AQAITIESGPRCHDGTRRTVRYDI---DMIKCIYCGLCQEACPVDAIVEG 121 (163)
Q Consensus 50 ~~~l~~~~~~~ekCi~C~~C~~~CP----~~aI~i~~~~~~~~~~~~~~~~~i---d~~~Ci~Cg~Cv~vCP~~AI~~~ 121 (163)
.|.+.+| .+|||.|+.|+++|- +++|.+.. .+..++....++. +...|++||.|+++||++||+.-
T Consensus 138 ~p~i~~D---~~rCI~CgRCVr~C~evqg~~ai~~~~---RG~~~~I~~~~~~~~~~s~~C~~CG~Cv~vCPvGAL~eK 210 (236)
T PRK07569 138 HPRFGID---HNRCVLCTRCVRVCDEIEGAHTWDVAG---RGVNSRVIADLNQPWGTSDACTSCGKCVQACPTGAIFRK 210 (236)
T ss_pred CCCEEEC---CCCCCCCCHHHHHHHHHCCCCEEEEEC---CCCCCEEECCCCCCCCCCCCCCCCCCCHHCCCCHHCCCC
T ss_conf 9746744---773860877998887532873688614---798888836778874444552125653421920226557
No 37
>PRK05035 electron transport complex protein RnfC; Provisional
Probab=98.96 E-value=2.6e-11 Score=89.14 Aligned_cols=109 Identities=20% Similarity=0.383 Sum_probs=64.7
Q ss_pred CCCCHHCCCEEEEEEC----CCCCCCEECCCCHHHHHHCCCCC--CCCCCCCCCCEEEEEEEEEHHHCCCCCCCHHHCCC
Q ss_conf 5680005723787405----88742213452232533088321--01224544733577888505555868872333783
Q gi|254780861|r 42 STSPRFRGEHALRRYP----NGEERCIACKLCEAICPAQAITI--ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 (163)
Q Consensus 42 ~~~~rfRG~~~l~~~~----~~~ekCi~C~~C~~~CP~~aI~i--~~~~~~~~~~~~~~~~~id~~~Ci~Cg~Cv~vCP~ 115 (163)
++.....|...+..++ ..+.-||.||.|+.+||.+.+=. .+.-+..+-.+ .. ++++..||-||.|..|||.
T Consensus 353 PV~K~Tn~ILa~~~~e~~~~~~e~~CIRCG~Cv~aCP~~LlPqqL~w~ak~~~~dk-a~--~~~l~DCIECG~CaYVCPS 429 (725)
T PRK05035 353 PVVKTTNCLLAPSATELPPPPPEQACIRCGACADACPASLLPQQLYWFAKAEEHDK-AE--EHNLFDCIECGACAYVCPS 429 (725)
T ss_pred CCEECCEEEEECCHHHCCCCCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHCCCHHH-HH--HCCCCCCCCCCCCCEECCC
T ss_conf 70305406996287774888888777525136763899777999999987677999-98--6799636002877626898
Q ss_pred CEEECCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf 103036773567576877332999998848999999985
Q gi|254780861|r 116 DAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVR 154 (163)
Q Consensus 116 ~AI~~~~~~e~a~~~r~~l~~~k~~Ll~~g~~~~~~~~~ 154 (163)
+ |.+.+.|.++...-...--.+.+-...-.+||.+.++
T Consensus 430 ~-IPLVqYyR~aK~eI~~~~~e~~~ae~Ak~RfE~r~~R 467 (725)
T PRK05035 430 N-IPLVQYYRQAKAEIRAIEQEKKKAEEAKARFEARQAR 467 (725)
T ss_pred C-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8-8489999999999999999999899999988999999
No 38
>TIGR02936 fdxN_nitrog ferredoxin III, nif-specific; InterPro: IPR014283 This entry consists of ferredoxins which are encoded in the nitrogen fixation regions of many nitrogen-fixing bacteria. The charcterised protein from Rhodobacter capsulatus (Rhodopseudomonas capsulata) is homodimeric and contains two [4Fe-4S] clusters bound per monomer. Although nif-specific, these prtoeins are not universal in nitrogen-fixers as other nitrogenase systems may substitute flavodoxins, or different types of ferredoxin. .
Probab=98.89 E-value=7.3e-10 Score=80.22 Aligned_cols=61 Identities=26% Similarity=0.604 Sum_probs=45.0
Q ss_pred CCCCCEECCCCHHHHHHCCCCCCCC--------------CCCCC--CCEEEEEEEEEHHHCCCCCCCHHHCCCCEEECC
Q ss_conf 8742213452232533088321012--------------24544--733577888505555868872333783103036
Q gi|254780861|r 59 GEERCIACKLCEAICPAQAITIESG--------------PRCHD--GTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 (163)
Q Consensus 59 ~~ekCi~C~~C~~~CP~~aI~i~~~--------------~~~~~--~~~~~~~~~id~~~Ci~Cg~Cv~vCP~~AI~~~ 121 (163)
|++||||||.|-+||+-+.+.+..- ....+ .++++. -.+.+.||+|+.|..|||++|=++.
T Consensus 19 D~~kCIGCGRCfKVCgr~Vl~L~G~~EeGE~V~~~~de~d~dDdE~~rkvM~--~~~~~~CIGC~AC~rVCPk~CqTH~ 95 (96)
T TIGR02936 19 DQEKCIGCGRCFKVCGRDVLTLKGINEEGELVDPSDDEEDDDDDEIERKVMV--LANPGNCIGCGACARVCPKKCQTHA 95 (96)
T ss_pred CHHCCCCCCCCCCCCCCCCCEEEEECCCCCEECCCCCCCCCCCCCCCCEEEE--ECCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 4310754546314178676422212467857638888733468873442777--4287785042347705688631058
No 39
>PRK09129 NADH dehydrogenase subunit G; Validated
Probab=98.88 E-value=1.2e-09 Score=78.94 Aligned_cols=84 Identities=21% Similarity=0.345 Sum_probs=51.5
Q ss_pred CCCCCCCCCCCCCCCHHCCCEEEEEECCCCCCCEECCCCHHHHHH----CCCCCCCCCCCCCCCEEEEEEEEEHHHCCCC
Q ss_conf 852257875775680005723787405887422134522325330----8832101224544733577888505555868
Q gi|254780861|r 31 KTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA----QAITIESGPRCHDGTRRTVRYDIDMIKCIYC 106 (163)
Q Consensus 31 ~~T~~YP~e~~~~~~rfRG~~~l~~~~~~~ekCi~C~~C~~~CP~----~aI~i~~~~~~~~~~~~~~~~~id~~~Ci~C 106 (163)
..+..|++++..++...-| |.+.+ |.+|||.|+.|+++|-. ++|.+.. + +........++-. ..|-||
T Consensus 118 ~~~~~~~~~~~~~~~~~~~-p~i~~---d~~rCi~C~rCvr~c~e~~~~~~~~~~~--r-g~~~~i~~~~~~~-~~~~~~ 189 (777)
T PRK09129 118 RSTSRYTEEKRVVFDKDLG-PLIST---EMTRCIHCTRCVRFGQEIAGVMELGMMG--R-GEHSEITTFVGKT-VDSELS 189 (777)
T ss_pred CCCCCCCCCCCCCCCCCCC-CCEEE---CCCCCCCCCHHHHHHHHHCCCEEEEEEE--E-CCCCEEECCCCCC-CCCHHH
T ss_conf 9865566666677776789-63562---4651410557888987635860899995--0-6753021247986-541222
Q ss_pred CCCHHHCCCCEEECCC
Q ss_conf 8723337831030367
Q gi|254780861|r 107 GLCQEACPVDAIVEGP 122 (163)
Q Consensus 107 g~Cv~vCP~~AI~~~~ 122 (163)
|.|+++||++||+..+
T Consensus 190 G~cv~~CP~GAL~~k~ 205 (777)
T PRK09129 190 GNMIDLCPVGALTSKP 205 (777)
T ss_pred HHHHHHCCCCCCCCCC
T ss_conf 3156545644130564
No 40
>TIGR02163 napH_ ferredoxin-type protein, NapH/MauN family; InterPro: IPR011886 Most members of this family are the NapH protein, found next to NapG,in operons that encode the periplasmic nitrate reductase. Some species with this reductase lack NapC but accomplish electron transfer to NapAB in some other manner, likely to involve NapH, NapG, and/or some other protein. A few members of this protein are designated MauN and are found in methylamine utilization operons in species that appear to lack a periplasmic nitrate reductase.; GO: 0005506 iron ion binding, 0006118 electron transport.
Probab=98.87 E-value=5.8e-10 Score=80.86 Aligned_cols=69 Identities=25% Similarity=0.594 Sum_probs=46.8
Q ss_pred CCEEEEEEC-CCCCCCEECCCCHHHHHH-CCCCCCCCCC--CCCCCEEEEEEEEEHHHCCCCCCCHHHCCCCEEECCC
Q ss_conf 723787405-887422134522325330-8832101224--5447335778885055558688723337831030367
Q gi|254780861|r 49 GEHALRRYP-NGEERCIACKLCEAICPA-QAITIESGPR--CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 (163)
Q Consensus 49 G~~~l~~~~-~~~ekCi~C~~C~~~CP~-~aI~i~~~~~--~~~~~~~~~~~~id~~~Ci~Cg~Cv~vCP~~AI~~~~ 122 (163)
|+-.+.+-. +++|+|+.|+.|.++||. +.+.+..+++ ..+++.. +--++||.||.|+||||.||+.++.
T Consensus 191 G~~s~~ki~~~~~~~C~~Cm~C~~vCpEp~VL~~~~k~~~~~~~~s~~-----V~SgdC~~CGRCIDVC~~~vl~f~~ 263 (263)
T TIGR02163 191 GRKSLIKIAASDREKCTNCMDCFNVCPEPQVLRMPLKKEEDAKGGSTL-----VLSGDCINCGRCIDVCAEDVLGFTT 263 (263)
T ss_pred HHHHHHHEEECCHHCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCE-----EECCCCCCCCCEEEECCCCCCCCCC
T ss_conf 401432124302322687757760158520125000675555679823-----6662415667612442766231269
No 41
>PRK10330 electron transport protein HydN; Provisional
Probab=98.86 E-value=4.3e-10 Score=81.65 Aligned_cols=65 Identities=34% Similarity=0.696 Sum_probs=42.6
Q ss_pred CCCCCEECCCCHHHHHHCCCCCCCCCCCCC-CCEEEEE-EEEEHHHCCCCCC------CHHHCCCCEEECCCC
Q ss_conf 874221345223253308832101224544-7335778-8850555586887------233378310303677
Q gi|254780861|r 59 GEERCIACKLCEAICPAQAITIESGPRCHD-GTRRTVR-YDIDMIKCIYCGL------CQEACPVDAIVEGPN 123 (163)
Q Consensus 59 ~~ekCi~C~~C~~~CP~~aI~i~~~~~~~~-~~~~~~~-~~id~~~Ci~Cg~------Cv~vCP~~AI~~~~~ 123 (163)
++++||||+.|+.+||.++|.+...+.... +...... ..--..+|.+|.- ||++||++||++++.
T Consensus 85 d~~~CiGC~~C~~ACPyga~~~~~~p~~~~~~~~~~~~~~~~~~~KCd~C~~R~~~PACV~aCPt~Al~fgd~ 157 (181)
T PRK10330 85 MQERCIGCKTCVVACPYGAMEVVVRPVIRNSGAGLNVRAEKAEANKCDLCNHREDGPACMAACPTHALICVDR 157 (181)
T ss_pred CCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHHCCCCCEEECCH
T ss_conf 5472927293013399998350456552234666555455525886301336788860067788221166178
No 42
>PRK08166 NADH dehydrogenase subunit G; Validated
Probab=98.84 E-value=2.1e-09 Score=77.42 Aligned_cols=83 Identities=18% Similarity=0.260 Sum_probs=48.3
Q ss_pred CCCCCCCCCCCCCHHCCCEEEEEECCCCCCCEECCCCHHHHHH--CCCCCCCCCCCCCCCEE-EEEEEEEHHHCCCCCCC
Q ss_conf 2257875775680005723787405887422134522325330--88321012245447335-77888505555868872
Q gi|254780861|r 33 TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA--QAITIESGPRCHDGTRR-TVRYDIDMIKCIYCGLC 109 (163)
Q Consensus 33 T~~YP~e~~~~~~rfRG~~~l~~~~~~~ekCi~C~~C~~~CP~--~aI~i~~~~~~~~~~~~-~~~~~id~~~Ci~Cg~C 109 (163)
...|.++|...+..+-| |++.+| .++||.|+.|+++|-. +...+... +.+.+. ...+.-....|-|||.|
T Consensus 125 ~~r~~~~kr~~~~~~~~-p~i~~d---~~rCI~C~rCvR~c~ei~g~~~~~~~---g~~~~~~~~~~~~~~~~s~f~Gnc 197 (858)
T PRK08166 125 FRRYRFTKRTHRNQDLG-PFISHE---MNRCIACYRCVRYYKDYAGGTDLGVY---GAHDNVYFGRPEDGTLESEFSGNL 197 (858)
T ss_pred CCCCCCCCCCCCCCCCC-CCEEEC---CCCCCCCCHHHHHHHHHCCCCCEEEE---ECCCCEEECCCCCCCCCCCCCCCH
T ss_conf 66567778777766789-755626---88363575565517865486412356---314413642666775566134533
Q ss_pred HHHCCCCEEECCC
Q ss_conf 3337831030367
Q gi|254780861|r 110 QEACPVDAIVEGP 122 (163)
Q Consensus 110 v~vCP~~AI~~~~ 122 (163)
|++||++||+-..
T Consensus 198 v~vCPvGALt~k~ 210 (858)
T PRK08166 198 VEVCPTGVFTDKT 210 (858)
T ss_pred HHHCCCCCCCCCC
T ss_conf 4307755434642
No 43
>TIGR03294 FrhG coenzyme F420 hydrogenase, subunit gamma. This model represents that clade of F420-dependent hydrogenases (FRH) beta subunits found exclusively and universally in methanogenic archaea. This protein contains two 4Fe-4S cluster binding domains (pfam00037) and scores above the trusted cutoff to model pfam01058 for the "NADH ubiquinone oxidoreductase, 20 Kd subunit" family.
Probab=98.82 E-value=1.1e-09 Score=79.26 Aligned_cols=48 Identities=35% Similarity=0.915 Sum_probs=40.6
Q ss_pred CCCCCEECCCCHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEHHHCCCCCCCHHHCCCCE
Q ss_conf 87422134522325330883210122454473357788850555586887233378310
Q gi|254780861|r 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 (163)
Q Consensus 59 ~~ekCi~C~~C~~~CP~~aI~i~~~~~~~~~~~~~~~~~id~~~Ci~Cg~Cv~vCP~~A 117 (163)
+++.|+|||.|+.+||++||.|+.++. .||..+||.||.|..+||..-
T Consensus 172 n~~LC~GCg~Ca~~Cp~~AI~~~~gkp-----------~i~~~~Ci~CG~C~~~CPr~~ 219 (228)
T TIGR03294 172 NQGLCMGCGTCAAACPTRAIEMEDGRP-----------NVNRDRCIKCGACYVQCPRAF 219 (228)
T ss_pred CCCCCCCCHHHHHHCCCCCCEEECCCE-----------EECHHHCCCCCCCCCCCCCCC
T ss_conf 632167815778548857625653836-----------776322776774412197642
No 44
>COG1142 HycB Fe-S-cluster-containing hydrogenase components 2 [Energy production and conversion]
Probab=98.81 E-value=7.7e-10 Score=80.10 Aligned_cols=45 Identities=42% Similarity=0.817 Sum_probs=23.9
Q ss_pred CCCHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEHHHCCCCCCCHHHCCCCEEECCC
Q ss_conf 52232533088321012245447335778885055558688723337831030367
Q gi|254780861|r 67 KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 (163)
Q Consensus 67 ~~C~~~CP~~aI~i~~~~~~~~~~~~~~~~~id~~~Ci~Cg~Cv~vCP~~AI~~~~ 122 (163)
.-|+++||++||..+.+ . -.+|..+||+||+|+.+||++||+|..
T Consensus 59 aPC~~vCP~~AI~~~~~------~-----v~V~~ekCiGC~~C~~aCPfGai~~~~ 103 (165)
T COG1142 59 APCAEVCPVGAITRDDG------A-----VQVDEEKCIGCKLCVVACPFGAITMVS 103 (165)
T ss_pred CCHHHHCCHHHEECCCC------C-----EEECCCCCCCCCHHHHCCCCCEEEEEE
T ss_conf 63566595423041589------6-----587122165852466409864499985
No 45
>COG2878 Predicted NADH:ubiquinone oxidoreductase, subunit RnfB [Energy production and conversion]
Probab=98.80 E-value=7.2e-10 Score=80.29 Aligned_cols=58 Identities=33% Similarity=0.637 Sum_probs=45.1
Q ss_pred CCCCCEECCCCHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEHHHCCCCCCCHHHCCCCEEECCCCCCC
Q ss_conf 87422134522325330883210122454473357788850555586887233378310303677356
Q gi|254780861|r 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEF 126 (163)
Q Consensus 59 ~~ekCi~C~~C~~~CP~~aI~i~~~~~~~~~~~~~~~~~id~~~Ci~Cg~Cv~vCP~~AI~~~~~~e~ 126 (163)
+|+.||||..|.++||++||...... .. ++.-.-|++|++||..||+++|.|.+.-+.
T Consensus 113 ~e~~ciGCtkCiqaCpvdAivg~~~~--------mh--tv~~dlCTGC~lCva~CPtdci~m~~~~~~ 170 (198)
T COG2878 113 DEANCIGCTKCIQACPVDAIVGATKA--------MH--TVIADLCTGCDLCVAPCPTDCIEMQPVAET 170 (198)
T ss_pred CCHHCCCCHHHHHHCCHHHHHCCCHH--------HH--HHHHHHHCCCCCCCCCCCCCCEEEEECCCC
T ss_conf 12201443989984971443125325--------78--989988467776658798770245215541
No 46
>TIGR02912 sulfite_red_C sulfite reductase, subunit C; InterPro: IPR014261 This entry represents subunit C, one of the three subunits of the anaerobic sulphite reductase of Salmonella, and close homologues from various Clostridium species, where the three-gene neighbourhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substrates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulphite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulphide gas from sulphite..
Probab=98.80 E-value=1.4e-09 Score=78.58 Aligned_cols=65 Identities=29% Similarity=0.589 Sum_probs=46.5
Q ss_pred CCCEEEEEECCCCCCCEECCCCHHHHHH---CCCCCCCCCCCCCCCEEEEEEEEEHHHCCCCCCCHHHCCCCEEECCCC
Q ss_conf 5723787405887422134522325330---883210122454473357788850555586887233378310303677
Q gi|254780861|r 48 RGEHALRRYPNGEERCIACKLCEAICPA---QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 (163)
Q Consensus 48 RG~~~l~~~~~~~ekCi~C~~C~~~CP~---~aI~i~~~~~~~~~~~~~~~~~id~~~Ci~Cg~Cv~vCP~~AI~~~~~ 123 (163)
-|...+..-..+..+||||+.|+++|-. +|+.++..+.. =+..+||+||-||..|||.|=+=+++
T Consensus 162 ~GI~G~t~~~y~~~rC~gC~ACV~~C~~~~~GaL~~~N~Kvv-----------r~~~~CIGCGECv~~CPT~AW~R~~~ 229 (323)
T TIGR02912 162 FGIIGMTEPRYDADRCIGCGACVKVCKKKAVGALSLENYKVV-----------RDESKCIGCGECVLKCPTGAWTRSEE 229 (323)
T ss_pred CCEECCCCCCCCCCCCCCCHHHHHHCCCCCCEEEEEECCEEE-----------ECCCCEECCCCHHHCCCCCCCCCCCC
T ss_conf 314325454426553313246784034322102231042256-----------52775003530132088644445714
No 47
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=98.79 E-value=1.4e-09 Score=78.59 Aligned_cols=61 Identities=31% Similarity=0.746 Sum_probs=44.0
Q ss_pred CCCEECCCCHHHHHHCCCCCCCCCCCCCCC----------EEEEEEEEEHHHCCCCCCCHHHCCCCEEECCCCC
Q ss_conf 422134522325330883210122454473----------3577888505555868872333783103036773
Q gi|254780861|r 61 ERCIACKLCEAICPAQAITIESGPRCHDGT----------RRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124 (163)
Q Consensus 61 ekCi~C~~C~~~CP~~aI~i~~~~~~~~~~----------~~~~~~~id~~~Ci~Cg~Cv~vCP~~AI~~~~~~ 124 (163)
++|+||+.|+.+||..+-. +-+.+.|+ -.+..+.||...|+.||+|+.+||.+|+.++++-
T Consensus 224 d~CtgCg~C~~vCPve~~n---efn~Gl~~~kAiy~p~~qaVp~~~~Id~~~c~~c~~C~~ac~~~av~~~q~~ 294 (622)
T COG1148 224 DKCTGCGACSEVCPVEVPN---EFNEGLGKRKAIYIPFPQAVPLNYNIDPKHCIECGLCEKACPNEAVDLNQEP 294 (622)
T ss_pred CCCCCCCCCCCCCCCCCCC---CCCCCCCCCEEEECCCHHHCCCCCCCCHHHHCCCHHHHHCCCCCCCCCCCCC
T ss_conf 1265532222347765675---1012545323564256455254532171650210356643993000137887
No 48
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=98.79 E-value=1.2e-09 Score=78.96 Aligned_cols=71 Identities=31% Similarity=0.579 Sum_probs=52.7
Q ss_pred CCCCCCCCHHCC-CEEEEEECCCCCCCEECCCCHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEHHHCCCCCCCHHHCCCC
Q ss_conf 757756800057-2378740588742213452232533088321012245447335778885055558688723337831
Q gi|254780861|r 38 FEKGSTSPRFRG-EHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 (163)
Q Consensus 38 ~e~~~~~~rfRG-~~~l~~~~~~~ekCi~C~~C~~~CP~~aI~i~~~~~~~~~~~~~~~~~id~~~Ci~Cg~Cv~vCP~~ 116 (163)
-+.....+-+++ .+.+ +.|+|+.||.|+.+|+.+||.+.... .|.+|-..|-+||.|..+||.+
T Consensus 50 ~e~~~~~e~~~~~~p~i-----~~e~C~~CG~C~~vC~f~Ai~~~~~~----------~~~~~~~lC~GCgaC~~~CP~~ 114 (284)
T COG1149 50 VEVLEEEEVIRGEIPEI-----DPEKCIRCGKCAEVCRFGAIVVLPGG----------KPVLNPDLCEGCGACSIVCPEP 114 (284)
T ss_pred CCHHHHHHHHHHHCCCC-----CHHHCCCCCCHHHHCCCCEEEECCCC----------CEECCCCCCCCCCCCEEECCCC
T ss_conf 50113567787504603-----75774301726876788808973788----------6002802026766333247876
Q ss_pred EEECCCC
Q ss_conf 0303677
Q gi|254780861|r 117 AIVEGPN 123 (163)
Q Consensus 117 AI~~~~~ 123 (163)
||.+.+.
T Consensus 115 AI~~~~~ 121 (284)
T COG1149 115 AIEEEPV 121 (284)
T ss_pred CCCCCCC
T ss_conf 5554320
No 49
>COG0437 HybA Fe-S-cluster-containing hydrogenase components 1 [Energy production and conversion]
Probab=98.78 E-value=2.7e-09 Score=76.73 Aligned_cols=56 Identities=34% Similarity=0.748 Sum_probs=45.3
Q ss_pred CCCCCEECCCCHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEHHHCCCC------C---CCHHHCCCCEEECCCCCCCC
Q ss_conf 874221345223253308832101224544733577888505555868------8---72333783103036773567
Q gi|254780861|r 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYC------G---LCQEACPVDAIVEGPNFEFA 127 (163)
Q Consensus 59 ~~ekCi~C~~C~~~CP~~aI~i~~~~~~~~~~~~~~~~~id~~~Ci~C------g---~Cv~vCP~~AI~~~~~~e~a 127 (163)
|.++||||+-|..|||.+|..+.+.... ..+|+|| | .||++||++|+.+++.-|.-
T Consensus 98 d~d~CIGC~yCi~ACPyga~~~~~~~~~-------------~~KCt~C~~ri~~g~~PaCV~~CP~~A~~fG~~~d~~ 162 (203)
T COG0437 98 DKDLCIGCGYCIAACPYGAPQFNPDKGV-------------VDKCTFCVDRVAVGKLPACVEACPTGALIFGDIDDPK 162 (203)
T ss_pred CCCCCCCCHHHHHHCCCCCCEECCCCCC-------------CCCCCCCHHHHHCCCCCCEECCCCCCCCCCCCHHHCC
T ss_conf 5872247347786499888565766671-------------2346761767755999740014886654115222121
No 50
>COG1145 NapF Ferredoxin [Energy production and conversion]
Probab=98.77 E-value=1.1e-09 Score=79.21 Aligned_cols=58 Identities=36% Similarity=0.754 Sum_probs=44.9
Q ss_pred CCCCCEECCCCHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEHHHCCCCCCCHHHCCCCEEECCC
Q ss_conf 8742213452232533088321012245447335778885055558688723337831030367
Q gi|254780861|r 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 (163)
Q Consensus 59 ~~ekCi~C~~C~~~CP~~aI~i~~~~~~~~~~~~~~~~~id~~~Ci~Cg~Cv~vCP~~AI~~~~ 122 (163)
+.++||+||.|+.+||.++|.+.... .. .....+|...|+.||.|+.+||++||.+..
T Consensus 27 ~~~~Ci~Cg~C~~~CP~~ai~~~~~~--~~----~~~~~~~~~~C~~C~~C~~~Cp~~a~~~~~ 84 (99)
T COG1145 27 DAEKCIGCGLCVKVCPTGAIELIEEG--LL----LPEVVIDPDLCVLCGACLKVCPVDALSIAE 84 (99)
T ss_pred CCCCCCCCCCHHHHCCHHHHHHCCCC--CC----CCEEEECCCCCCCHHHHHHHCCCCHHHHHH
T ss_conf 40019868634545768887522134--66----751545802053457888449964224655
No 51
>PRK10882 hydrogenase 2 protein HybA; Provisional
Probab=98.75 E-value=8.2e-10 Score=79.92 Aligned_cols=57 Identities=28% Similarity=0.718 Sum_probs=36.3
Q ss_pred CCCCCEECCCCHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEHHHCCCCC-------------CCHHHCCCCEEECCCCCC
Q ss_conf 8742213452232533088321012245447335778885055558688-------------723337831030367735
Q gi|254780861|r 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG-------------LCQEACPVDAIVEGPNFE 125 (163)
Q Consensus 59 ~~ekCi~C~~C~~~CP~~aI~i~~~~~~~~~~~~~~~~~id~~~Ci~Cg-------------~Cv~vCP~~AI~~~~~~e 125 (163)
|+++||||+.|..+||-+....+..+.. ++ +.+|.+|. .||++||++||.+++.-|
T Consensus 142 d~~~CiGC~~C~~aCP~~iP~~~~~~~~--~~---------i~KC~~C~~~~~dRi~~G~~PACv~aCPtgAl~FG~R~e 210 (329)
T PRK10882 142 DKDVCTGCRYCMVACPFNVPKYDYNNPF--GA---------IHKCELCNQKGVERLDKGGLPGCVEVCPTGAVIFGTREE 210 (329)
T ss_pred CCCEECCCCHHHHCCCCCCCCCCCCCCC--CC---------EEECCCCCCCCHHHHHCCCCCCCHHHCCCCCCEECCHHH
T ss_conf 1570077106754399999742355789--86---------413889878532588789987045137423343258999
Q ss_pred C
Q ss_conf 6
Q gi|254780861|r 126 F 126 (163)
Q Consensus 126 ~ 126 (163)
+
T Consensus 211 l 211 (329)
T PRK10882 211 L 211 (329)
T ss_pred H
T ss_conf 9
No 52
>COG2768 Uncharacterized Fe-S center protein [General function prediction only]
Probab=98.74 E-value=2.4e-09 Score=77.09 Aligned_cols=82 Identities=35% Similarity=0.619 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHCCCEEEEEEC-CCCCCCEECCCCHHHHHHCCCCCCCCCCCCCCCEEEE
Q ss_conf 999999999984069852257875775680005723787405-8874221345223253308832101224544733577
Q gi|254780861|r 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYP-NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94 (163)
Q Consensus 16 ~~~gl~~t~k~~~~~~~T~~YP~e~~~~~~rfRG~~~l~~~~-~~~ekCi~C~~C~~~CP~~aI~i~~~~~~~~~~~~~~ 94 (163)
.+.|+.=|+||+--.-++..-|.+. | +...| -.+++|+.|++|+..||.+||.... .
T Consensus 158 ~~tg~ggtikn~~~G~~s~~~k~~q----------H-~~~~p~v~e~kc~~c~~cv~~cp~~Ai~~~~------~----- 215 (354)
T COG2768 158 GMTGFGGTIKNVGMGCASLAGKVDQ----------H-LDEKPVVVEEKCYDCGLCVKICPVGAITLTK------V----- 215 (354)
T ss_pred CCCCCCCHHCCCCCCCCCCCCCCCC----------C-CCCCCEEEEECCCCCCHHHHHCCCCCEECCC------C-----
T ss_conf 4212253001132552015765112----------4-5667514431103531366638775111100------1-----
Q ss_pred EEEEEHHHCCCCCCCHHHCCCCEEEC
Q ss_conf 88850555586887233378310303
Q gi|254780861|r 95 RYDIDMIKCIYCGLCQEACPVDAIVE 120 (163)
Q Consensus 95 ~~~id~~~Ci~Cg~Cv~vCP~~AI~~ 120 (163)
-.||+.+|+.||.|.++||.+|+..
T Consensus 216 -~~I~~~~ci~c~~c~~ac~~gav~~ 240 (354)
T COG2768 216 -VKIDYEKCIGCGQCMEACPYGAVDQ 240 (354)
T ss_pred -EEECHHHCCCHHHHHHHCCCCCCCC
T ss_conf -3533233543022554366765030
No 53
>PRK13795 hypothetical protein; Provisional
Probab=98.73 E-value=4e-09 Score=75.70 Aligned_cols=50 Identities=36% Similarity=0.895 Sum_probs=41.1
Q ss_pred CCEECCCCHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEHHHCCCCCCCHHHCCCCEEEC
Q ss_conf 22134522325330883210122454473357788850555586887233378310303
Q gi|254780861|r 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 (163)
Q Consensus 62 kCi~C~~C~~~CP~~aI~i~~~~~~~~~~~~~~~~~id~~~Ci~Cg~Cv~vCP~~AI~~ 120 (163)
.|+||+.|+..||.+||+++.... .+.||..+|+.||.|+++||.--+..
T Consensus 576 ~C~gCg~C~~~CP~gAi~i~~~~~---------~i~Vd~~~CihC~~C~~~Cp~~~~~~ 625 (630)
T PRK13795 576 ICTGCGVCVGWCPTGAISIDEKKK---------KIVVDEEKCIHCGKCMEVCPLVKYLD 625 (630)
T ss_pred HCCCCCHHHHHCCCCCEEEECCCC---------EEEECCHHCCCHHHHHHHCCEEEEEC
T ss_conf 478973466337888479736886---------49747132774377762387325631
No 54
>COG2221 DsrA Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]
Probab=98.72 E-value=3.4e-09 Score=76.13 Aligned_cols=47 Identities=45% Similarity=0.907 Sum_probs=40.3
Q ss_pred CCCCCCEECCCCHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEHHHCCCCCCCHHHCCC
Q ss_conf 8874221345223253308832101224544733577888505555868872333783
Q gi|254780861|r 58 NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 (163)
Q Consensus 58 ~~~ekCi~C~~C~~~CP~~aI~i~~~~~~~~~~~~~~~~~id~~~Ci~Cg~Cv~vCP~ 115 (163)
.++|+|.||+.|+.+||++||.+... .-.+|..+|+.||.|+.+||.
T Consensus 169 ~~~E~c~gc~~cv~~C~~gAI~~~~~-----------~l~id~~~Ci~Cg~Ci~~Cp~ 215 (317)
T COG2221 169 VDEELCRGCGKCVKVCPTGAITWDGK-----------KLKIDGSKCIGCGKCIRACPK 215 (317)
T ss_pred CCHHHHCHHHHHHHHCCCCCEEECCC-----------EEEEEHHHCCCCCHHHHHCCH
T ss_conf 48788451576897498786342241-----------589845436573177663986
No 55
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family; InterPro: IPR012839 This subset of the radical-SAM domain includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centred radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4 from EC, IPR012838 from INTERPRO) and the anaerobic ribonucleotide reductase activating enzyme (IPR012837 from INTERPRO). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in Escherichia coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterisation and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain, which follows a conserved group of three cysteines and contains a variable pattern of 0 to 8 additional cysteines..
Probab=98.71 E-value=4.3e-09 Score=75.51 Aligned_cols=71 Identities=32% Similarity=0.592 Sum_probs=49.0
Q ss_pred CCHHCCCEEEEEECCCCCCCEECCCCHHHHHHC----CCCCCCCCCCCCCCEEEEEEEEEHHHCCCCCCCHHHCCCCEEE
Q ss_conf 800057237874058874221345223253308----8321012245447335778885055558688723337831030
Q gi|254780861|r 44 SPRFRGEHALRRYPNGEERCIACKLCEAICPAQ----AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 (163)
Q Consensus 44 ~~rfRG~~~l~~~~~~~ekCi~C~~C~~~CP~~----aI~i~~~~~~~~~~~~~~~~~id~~~Ci~Cg~Cv~vCP~~AI~ 119 (163)
||.-|..+.|... +++||+|+.|+.+||.. +=.+... .+++. ...++-.+|+.||.|+++||++||.
T Consensus 34 PEsq~~~~~~~f~---~~~C~~C~~C~~~C~~~IHTkta~~~~~---~~~~~---~~~~~~~~c~~Cg~C~~~Cp~~Al~ 104 (305)
T TIGR02494 34 PESQRKSPELLFK---ENRCLGCGKCVEVCPAGIHTKTARLVER---LDGRN---IISIRREKCTGCGKCTEACPSGALE 104 (305)
T ss_pred CCCCCCCCCEEEE---CCCCCCCCHHHHHCCCCCCCCHHHHHHH---HCCCC---CEEECCCCCCCCCCHHHCCCCHHHH
T ss_conf 8776765102420---0234430014543245423320677876---41786---0100001774111011038400642
Q ss_pred CCCC
Q ss_conf 3677
Q gi|254780861|r 120 EGPN 123 (163)
Q Consensus 120 ~~~~ 123 (163)
+...
T Consensus 105 ~~G~ 108 (305)
T TIGR02494 105 IVGK 108 (305)
T ss_pred EECC
T ss_conf 0245
No 56
>PRK09130 NADH dehydrogenase subunit G; Validated
Probab=98.71 E-value=8.3e-09 Score=73.78 Aligned_cols=82 Identities=20% Similarity=0.381 Sum_probs=51.6
Q ss_pred CCCCCCCCCCCCCHHCCCEEEEEECCCCCCCEECCCCHHHHHH----CCCCCCCCCCCCCCCEEEEEEEEEHHHCCCCCC
Q ss_conf 2257875775680005723787405887422134522325330----883210122454473357788850555586887
Q gi|254780861|r 33 TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA----QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108 (163)
Q Consensus 33 T~~YP~e~~~~~~rfRG~~~l~~~~~~~ekCi~C~~C~~~CP~----~aI~i~~~~~~~~~~~~~~~~~id~~~Ci~Cg~ 108 (163)
...|++.|+.++..+-| |.+.. +.+|||.|+.|++.|-- .+|.+. .++. .... ..|.-..-.+-|||.
T Consensus 121 ~~r~~~~kr~~~~~~~g-p~i~~---~~~rCI~C~RCVR~~~ev~g~~~lg~~--~RG~-~~~i-~t~~~~~~~se~sGn 192 (680)
T PRK09130 121 TSRFHENKRAVEDKYMG-PLVKT---AMTRCIHCTRCVRFATEVAGVPELGAI--GRGE-DMEI-TTYLEQALTSELSGN 192 (680)
T ss_pred CCCCCCCCCCCCCCCCC-CCEEC---CCCCCCCCCHHHHHHHCCCCCCEEEEE--CCCC-CCCC-CCCCCCCCCCCCCCC
T ss_conf 76567667677655689-62430---532042254467776403687557553--0366-5676-755578777644533
Q ss_pred CHHHCCCCEEECCC
Q ss_conf 23337831030367
Q gi|254780861|r 109 CQEACPVDAIVEGP 122 (163)
Q Consensus 109 Cv~vCP~~AI~~~~ 122 (163)
|+++||++||+..+
T Consensus 193 ~idvCPvGALtskp 206 (680)
T PRK09130 193 VIDLCPVGALTSKP 206 (680)
T ss_pred HHHCCCCCCCCCCC
T ss_conf 23206644423564
No 57
>COG1142 HycB Fe-S-cluster-containing hydrogenase components 2 [Energy production and conversion]
Probab=98.69 E-value=4.8e-09 Score=75.23 Aligned_cols=58 Identities=41% Similarity=0.793 Sum_probs=42.7
Q ss_pred CCCCCEECCCCHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEHHHCCCC------CCCHHHCCCCEEECCCCCC
Q ss_conf 874221345223253308832101224544733577888505555868------8723337831030367735
Q gi|254780861|r 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYC------GLCQEACPVDAIVEGPNFE 125 (163)
Q Consensus 59 ~~ekCi~C~~C~~~CP~~aI~i~~~~~~~~~~~~~~~~~id~~~Ci~C------g~Cv~vCP~~AI~~~~~~e 125 (163)
++||||||++|+.|||.++|.|...+ ...++.. -+|..| ..||++||++||...++-+
T Consensus 80 ~~ekCiGC~~C~~aCPfGai~~~~~~--~~~~~~a-------~KCdlC~~~e~gpaCVe~CP~~AL~lv~~~~ 143 (165)
T COG1142 80 DEEKCIGCKLCVVACPFGAITMVSYP--VAAKAVA-------VKCDLCAGREVGPACVEACPTEALELVDEIV 143 (165)
T ss_pred CCCCCCCCCHHHHCCCCCEEEEEEEC--CCCCCHH-------HHCCCCCCCCCCCCEEEECCHHHHCCCCHHH
T ss_conf 12216585246640986449998506--7320021-------1152666866787115767888830166767
No 58
>TIGR01945 rnfC electron transport complex, RnfABCDGE type, C subunit; InterPro: IPR010208 The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation . A closely related complex in Escherichia coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized . This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase (IPR003667 from INTERPRO), but is distinct. This entry describes the C subunit.; GO: 0051539 4 iron 4 sulfur cluster binding, 0006118 electron transport, 0016020 membrane.
Probab=98.69 E-value=5.8e-10 Score=80.86 Aligned_cols=85 Identities=24% Similarity=0.449 Sum_probs=55.7
Q ss_pred CCCCCCHHCCCEEEEEECC----CCCCCEECCCCHHHHHHCCC----CCCCCCCCCCCCEEEEEEEEEHHHCCCCCCCHH
Q ss_conf 7756800057237874058----87422134522325330883----210122454473357788850555586887233
Q gi|254780861|r 40 KGSTSPRFRGEHALRRYPN----GEERCIACKLCEAICPAQAI----TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 (163)
Q Consensus 40 ~~~~~~rfRG~~~l~~~~~----~~ekCi~C~~C~~~CP~~aI----~i~~~~~~~~~~~~~~~~~id~~~Ci~Cg~Cv~ 111 (163)
..++-..--|...+...+. -+.-||.|+.|++|||.+.+ ......+..|.- -..|+-+||-||-|.+
T Consensus 347 ~vPv~KGtsGiLal~~~E~~~~~~~~~CIRCg~Cv~~CPm~L~P~~L~~~A~~~~~d~~-----~~~~L~DCIECG~C~Y 421 (444)
T TIGR01945 347 DVPVTKGTSGILALDKEELTEPKPEKPCIRCGKCVNVCPMGLLPQQLNWLAKADEFDEA-----AEHNLMDCIECGSCSY 421 (444)
T ss_pred CCCEEECCCCEECCCCCCCCCCCCCCCCCCHHCCCCCCCCCCHHHHHHHHHHHHHHHHH-----HHCCCCEEEECCCCCC
T ss_conf 86677225400035701167874667884400101556744227999987531016889-----9638814661256654
Q ss_pred HCCCCEEECCCCCCCCCCC
Q ss_conf 3783103036773567576
Q gi|254780861|r 112 ACPVDAIVEGPNFEFATET 130 (163)
Q Consensus 112 vCP~~AI~~~~~~e~a~~~ 130 (163)
+||.+ |.+.+.|.+|+..
T Consensus 422 ~CPs~-iPLV~Y~R~aK~~ 439 (444)
T TIGR01945 422 VCPSN-IPLVQYIRQAKAK 439 (444)
T ss_pred CCCCC-CHHHHHHHHHHHH
T ss_conf 28775-2589999887898
No 59
>PRK06273 ferredoxin; Provisional
Probab=98.68 E-value=1.3e-09 Score=78.73 Aligned_cols=143 Identities=24% Similarity=0.385 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCC-CCCCCCCCCCCCCCCCHHCCCEEEEEECCCCCCCEECCCCHHHHHHCCCCCCCCC
Q ss_conf 999999999999999999998406-9852257875775680005723787405887422134522325330883210122
Q gi|254780861|r 6 CNVSFLFLKEFVGAFFLCLRYFFK-AKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGP 84 (163)
Q Consensus 6 ~~~~~~~~~~~~~gl~~t~k~~~~-~~~T~~YP~e~~~~~~rfRG~~~l~~~~~~~ekCi~C~~C~~~CP~~aI~i~~~~ 84 (163)
+++..+|+.++...|. |-+|. .++|..-=. ..-..|...+.. ...++-||||+-|+++||++||.|...+
T Consensus 4 k~~~ki~l~G~Y~Nle---RIifgsdr~Td~Emr-----~~IL~G~Ve~~~-~V~e~~CIGC~GCaNvCPT~AIeM~~~e 74 (163)
T PRK06273 4 KNLAKVFISGIYENLE---RIIFGSDRYTSKEMR-----AEILTGNVELPK-KVFEELCIGCGGCANACPTKAIEMIPVE 74 (163)
T ss_pred HHHHHHHHHHHHHHHH---HHEECCCCCCCHHHH-----HHHHCCCCCCCH-HHHHHHCCCCCCCCCCCCCCCEEEEECC
T ss_conf 8888999987775145---403336753309999-----999728756876-6758864365550023887755777656
Q ss_pred CCC--CCCEEEEEEEEEHHHCCCCCCCHHHCCCCEEEC--CCCCCCCCCCHHHHCCCHHHHHHH----HHHHHHHHHHHH
Q ss_conf 454--473357788850555586887233378310303--677356757687733299999884----899999998507
Q gi|254780861|r 85 RCH--DGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE--GPNFEFATETRQELYYDKERLLNN----GDRWESEIVRNI 156 (163)
Q Consensus 85 ~~~--~~~~~~~~~~id~~~Ci~Cg~Cv~vCP~~AI~~--~~~~e~a~~~r~~l~~~k~~Ll~~----g~~~~~~~~~~~ 156 (163)
-.. ++--+.....||..+|++|-.|-+.||+-|+.- ++.|-...-. +-.-.|..+||+. .++--+.+++-+
T Consensus 75 PVkite~~vK~~iP~id~ekCV~C~yCHDFCPvfslF~E~spIHPr~VGe-~~i~vD~~klL~kpveIseeql~~Is~~L 153 (163)
T PRK06273 75 PVKITETYVKEAIPKIDYEKCVYCLYCHDFCPVFALFNEISPIHPRHVGE-DLVDVDLSKLLEKPVEISEEQLSKIAQIL 153 (163)
T ss_pred CEEEECCHHHHCCCCCCHHHEEEEEECCCCCHHHHHHCCCCCCCCCCCCC-HHHHCCHHHHHCCCCCCCHHHHHHHHHHH
T ss_conf 56741103331266467332079887365243889854667768642241-00003599985585558999999999885
Q ss_pred HH
Q ss_conf 74
Q gi|254780861|r 157 VT 158 (163)
Q Consensus 157 ~~ 158 (163)
+.
T Consensus 154 s~ 155 (163)
T PRK06273 154 SI 155 (163)
T ss_pred EE
T ss_conf 13
No 60
>PRK09326 F420H2 dehydrogenase subunit F; Provisional
Probab=98.66 E-value=6.7e-09 Score=74.34 Aligned_cols=57 Identities=30% Similarity=0.652 Sum_probs=40.1
Q ss_pred CCCCCEECCCCHHHHHHCCCCCCCCCCCCCCCEE-EEEEEEEHHHCCCCCCCHHHCCC
Q ss_conf 8742213452232533088321012245447335-77888505555868872333783
Q gi|254780861|r 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRR-TVRYDIDMIKCIYCGLCQEACPV 115 (163)
Q Consensus 59 ~~ekCi~C~~C~~~CP~~aI~i~~~~~~~~~~~~-~~~~~id~~~Ci~Cg~Cv~vCP~ 115 (163)
+...|+|||.|+.+||.++|.++......+.... .....++...|+.||+|..+||.
T Consensus 10 d~glCtGCGaCvavCP~~~I~~~~~~~~~~p~~~~~~~~~~~~~~C~~Cg~C~~vCP~ 67 (346)
T PRK09326 10 NHDVCAACGACEAVCPIGAVTVKKAAEIRDPNDLSLYEKGAAYQVCEGCLTCSRICPV 67 (346)
T ss_pred CCCCCCCCHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCC
T ss_conf 5984578602776057787997236665687643311566673327886726663889
No 61
>TIGR03149 cyt_nit_nrfC cytochrome c nitrite reductase, Fe-S protein. Members of this protein family are the Fe-S protein, NrfC, of a cytochrome c nitrite reductase system for which the pentaheme cytochrome c protein, NrfB (family TIGR03146) is an unambiguous marker. Members of this protein family show similarity to other ferredoxin-like proteins, including a subunit of a polysulfide reductase.
Probab=98.66 E-value=1.1e-08 Score=73.04 Aligned_cols=28 Identities=29% Similarity=0.579 Sum_probs=17.0
Q ss_pred EEEHHHCCCCCCCHHHCCCCEEECCCCC
Q ss_conf 8505555868872333783103036773
Q gi|254780861|r 97 DIDMIKCIYCGLCQEACPVDAIVEGPNF 124 (163)
Q Consensus 97 ~id~~~Ci~Cg~Cv~vCP~~AI~~~~~~ 124 (163)
.||..+||+|+.|+.+||.+|..+.++.
T Consensus 121 ~vd~~~CiGC~~C~~aCPy~a~~~~~~~ 148 (225)
T TIGR03149 121 DVHKDLCVGCQYCIAACPYRVRFIHPVT 148 (225)
T ss_pred EEEHHHCCCHHHHHHCCCCCCCEECCCC
T ss_conf 9756869404189861999983548888
No 62
>PRK07860 NADH dehydrogenase subunit G; Validated
Probab=98.64 E-value=1.6e-08 Score=72.05 Aligned_cols=81 Identities=17% Similarity=0.311 Sum_probs=45.7
Q ss_pred CCCCCCCCCCCCCH-HCCCEEEEEECCCCCCCEECCCCHHHHHH----CCCCCCCCCCCCCCCEEEEEEEEEHHHCCCCC
Q ss_conf 22578757756800-05723787405887422134522325330----88321012245447335778885055558688
Q gi|254780861|r 33 TINYPFEKGSTSPR-FRGEHALRRYPNGEERCIACKLCEAICPA----QAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 (163)
Q Consensus 33 T~~YP~e~~~~~~r-fRG~~~l~~~~~~~ekCi~C~~C~~~CP~----~aI~i~~~~~~~~~~~~~~~~~id~~~Ci~Cg 107 (163)
...|.++|...+.- --|...+ . |.+|||.|+.|+++|-. .+|.+. .++. ........+ ....|.|||
T Consensus 137 ~~r~~~~kr~~~~~~~~~~~i~-~---d~~rCI~C~RCVR~c~ev~G~~~l~~~--~RG~-~~~I~~~~~-~~l~s~~sG 208 (809)
T PRK07860 137 ESRFTDVKRTFPKPINISAQVL-L---DRERCVLCARCTRFSDQIAGDPFIELQ--ERGA-LQQVGIYEG-EPFQSYFSG 208 (809)
T ss_pred CCCCCCCCCCCCCCCCCCCCEE-C---CCCCCCCCCHHHHHHHHHCCCCEEEEE--CCCC-CCCCCCCCC-CCCCCCCCH
T ss_conf 7667776657888767787424-0---677366281899999864487468540--4577-564464589-866653105
Q ss_pred CCHHHCCCCEEECC
Q ss_conf 72333783103036
Q gi|254780861|r 108 LCQEACPVDAIVEG 121 (163)
Q Consensus 108 ~Cv~vCP~~AI~~~ 121 (163)
.||++||++||+..
T Consensus 209 ncv~vCPvGALt~k 222 (809)
T PRK07860 209 NTVQICPVGALTGA 222 (809)
T ss_pred HHHHHCCCCCCCCC
T ss_conf 36654762201465
No 63
>COG1146 Ferredoxin [Energy production and conversion]
Probab=98.61 E-value=1.5e-08 Score=72.24 Aligned_cols=58 Identities=34% Similarity=0.761 Sum_probs=46.0
Q ss_pred CCCCCEECCCCHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEHHHCCCCCCCHHHCCCCEEECCCC
Q ss_conf 87422134522325330883210122454473357788850555586887233378310303677
Q gi|254780861|r 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 (163)
Q Consensus 59 ~~ekCi~C~~C~~~CP~~aI~i~~~~~~~~~~~~~~~~~id~~~Ci~Cg~Cv~vCP~~AI~~~~~ 123 (163)
+.++|+||+.|+.+||.+.+.+.... .+. .+.++...|+.||+|+.+||++||.+...
T Consensus 6 d~~~C~~c~~C~~~CP~~~~~~~~~~---~~~----~~~~~~e~C~~C~~C~~~CP~~aI~~~~~ 63 (68)
T COG1146 6 DYDKCIGCGICVEVCPAGVFDLGEDE---GGK----PVVARPEECIDCGLCELACPVGAIKVDIL 63 (68)
T ss_pred CHHHCCCCCEEEEECCCCCEECCCCC---CCC----EEEECHHHCCCCCCHHHHCCCCEEEEECC
T ss_conf 56886899842772887608832225---771----68876466865561344488677997335
No 64
>PRK10194 ferredoxin-type protein; Provisional
Probab=98.61 E-value=7.4e-09 Score=74.08 Aligned_cols=52 Identities=21% Similarity=0.595 Sum_probs=37.0
Q ss_pred CCCEECCCCHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEHHHCCCCCCCHHHCCCCEEEC
Q ss_conf 422134522325330883210122454473357788850555586887233378310303
Q gi|254780861|r 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 (163)
Q Consensus 61 ekCi~C~~C~~~CP~~aI~i~~~~~~~~~~~~~~~~~id~~~Ci~Cg~Cv~vCP~~AI~~ 120 (163)
..|++|+.|+.|||.+.|.+. .+|. ...+.+.+-|.||+.|+++||++||..
T Consensus 35 ~~CtrCg~Cv~aCp~~ii~~~-----~~g~---P~ldf~~~~C~~C~~C~~aCPtgal~~ 86 (164)
T PRK10194 35 THCTRCDACINACENNILQRG-----AGGY---PSVNFKNNECSFCYACAQACPESLFSP 86 (164)
T ss_pred HHCCCHHHHHHHCCHHHHCCC-----CCCC---EEEEECCCCCCCCHHHHHHCCHHHCCC
T ss_conf 878568499987399874228-----8995---588746788888346787757754594
No 65
>PRK10194 ferredoxin-type protein; Provisional
Probab=98.58 E-value=1.5e-08 Score=72.28 Aligned_cols=72 Identities=21% Similarity=0.449 Sum_probs=45.5
Q ss_pred CCCEEEEEECCCCCCCEECCCCHHHHHHCCCCCCCCCCCC------------CCC---------------E-----EEEE
Q ss_conf 5723787405887422134522325330883210122454------------473---------------3-----5778
Q gi|254780861|r 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCH------------DGT---------------R-----RTVR 95 (163)
Q Consensus 48 RG~~~l~~~~~~~ekCi~C~~C~~~CP~~aI~i~~~~~~~------------~~~---------------~-----~~~~ 95 (163)
-|.|.+.-. +.-|+.|+.|+.|||++++..+...... .+. . ....
T Consensus 57 ~g~P~ldf~---~~~C~~C~~C~~aCPtgal~~~~~~~~~~~~~i~~~Cl~~~~~~C~~C~d~Cp~~Ai~~~~~~~g~~~ 133 (164)
T PRK10194 57 GGYPSVNFK---NNECSFCYACAQACPESLFSPRHTRAWDLQFTIGDACLAYQSVECRRCQDSCEPMAIIFRPTLSGIYQ 133 (164)
T ss_pred CCCEEEEEC---CCCCCCCHHHHHHCCHHHCCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHHCCHHHCEEECCCCCCCC
T ss_conf 995588746---78888834678775775459443564462352054330589982000222488877051215698768
Q ss_pred EEEEHHHCCCCCCCHHHCCCCEEECCC
Q ss_conf 885055558688723337831030367
Q gi|254780861|r 96 YDIDMIKCIYCGLCQEACPVDAIVEGP 122 (163)
Q Consensus 96 ~~id~~~Ci~Cg~Cv~vCP~~AI~~~~ 122 (163)
..||..+|++||.|+.+||++||++..
T Consensus 134 P~Vd~~~C~GCG~C~~~CP~~ais~~~ 160 (164)
T PRK10194 134 PQLNSQLCNGCGACAASCPVSAITAEY 160 (164)
T ss_pred CEECCCCCCCCCCHHHHCCCCCEEEEE
T ss_conf 667686788642014208987718886
No 66
>COG1034 NuoG NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) [Energy production and conversion]
Probab=98.58 E-value=2.9e-08 Score=70.47 Aligned_cols=84 Identities=23% Similarity=0.448 Sum_probs=52.6
Q ss_pred CCCCCCCCCCCCCCCHHCCCEEEEEECCCCCCCEECCCCHHHHHHC----CCCCCCCCCCCCCCEEEEEEEEEHHHCCCC
Q ss_conf 8522578757756800057237874058874221345223253308----832101224544733577888505555868
Q gi|254780861|r 31 KTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ----AITIESGPRCHDGTRRTVRYDIDMIKCIYC 106 (163)
Q Consensus 31 ~~T~~YP~e~~~~~~rfRG~~~l~~~~~~~ekCi~C~~C~~~CP~~----aI~i~~~~~~~~~~~~~~~~~id~~~Ci~C 106 (163)
.-+..|-+.+......+-|.... + +.+|||.|..|+++|-.- .|.+. ++ +..+-..+.++--+.. .+|
T Consensus 118 ~~~sr~~~~kr~~~~~~~gp~v~-~---dm~RCI~C~RCVR~c~eiaG~~~l~~~--~r-g~~~~i~t~~~~~l~s-e~c 189 (693)
T COG1034 118 VSHSRYRETKRTHRDKDLGPLVK-Y---DMNRCILCTRCVRFCKEIAGTHELGVI--KR-GENSEIGTYLDQPLES-ELC 189 (693)
T ss_pred CCCCCCCCCCCCCCCCCCCCHHH-C---CCCCCEECHHHHHHHHHHCCCCCCCEE--EC-CCCCEEECCCCCCCCC-CCC
T ss_conf 77543433454323334431321-0---024013416667766640686200101--06-8872240224664221-115
Q ss_pred CCCHHHCCCCEEECCC
Q ss_conf 8723337831030367
Q gi|254780861|r 107 GLCQEACPVDAIVEGP 122 (163)
Q Consensus 107 g~Cv~vCP~~AI~~~~ 122 (163)
|.||++|||+||+-.+
T Consensus 190 Gncv~vCPvGALt~K~ 205 (693)
T COG1034 190 GNCVDVCPVGALTSKP 205 (693)
T ss_pred CCEEEECCCCCCCCCH
T ss_conf 6622546532304670
No 67
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=98.56 E-value=1.5e-08 Score=72.14 Aligned_cols=55 Identities=38% Similarity=0.696 Sum_probs=40.9
Q ss_pred CCCCCCEECCCCHH--HHHHCCCCCCCCCCCCCCCEEEEEEEEEHHHCCCCCCCHHHCCCCEEECCCC
Q ss_conf 88742213452232--5330883210122454473357788850555586887233378310303677
Q gi|254780861|r 58 NGEERCIACKLCEA--ICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 (163)
Q Consensus 58 ~~~ekCi~C~~C~~--~CP~~aI~i~~~~~~~~~~~~~~~~~id~~~Ci~Cg~Cv~vCP~~AI~~~~~ 123 (163)
-|+++|+||+.|.+ .|| +|...+. +. + ..||...|++||.|+++||.+||....+
T Consensus 574 Vd~~~CtGC~~C~~~~~Cp--si~~~~~----~~-k----~~id~~~C~GCg~C~~iCP~~a~~~~~~ 630 (640)
T COG4231 574 VDEEKCTGCGDCIVLSGCP--SIEPDPT----FK-K----ARIDPSSCNGCGSCVEVCPSFAIKEGGE 630 (640)
T ss_pred ECHHHCCCCHHHHHHCCCC--EEEECCC----CC-C----EEECCCCCCCCHHHHHCCCHHHCCCCCC
T ss_conf 0632148768888612886--5765587----77-3----3436100357602230086454200334
No 68
>TIGR03149 cyt_nit_nrfC cytochrome c nitrite reductase, Fe-S protein. Members of this protein family are the Fe-S protein, NrfC, of a cytochrome c nitrite reductase system for which the pentaheme cytochrome c protein, NrfB (family TIGR03146) is an unambiguous marker. Members of this protein family show similarity to other ferredoxin-like proteins, including a subunit of a polysulfide reductase.
Probab=98.52 E-value=1.2e-07 Score=66.67 Aligned_cols=56 Identities=29% Similarity=0.672 Sum_probs=43.1
Q ss_pred CCCCCEECCCCHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEHHHCCCCC----------CCHHHCCCCEEECCCCCCCC
Q ss_conf 8742213452232533088321012245447335778885055558688----------72333783103036773567
Q gi|254780861|r 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG----------LCQEACPVDAIVEGPNFEFA 127 (163)
Q Consensus 59 ~~ekCi~C~~C~~~CP~~aI~i~~~~~~~~~~~~~~~~~id~~~Ci~Cg----------~Cv~vCP~~AI~~~~~~e~a 127 (163)
|.++||||+.|+.+||.+++.+...... ..+|.||- .||++||++||.+++.-+..
T Consensus 123 d~~~CiGC~~C~~aCPy~a~~~~~~~~~-------------~~KC~~C~~~r~~~G~~PaCv~aCp~~A~~FGdl~Dp~ 188 (225)
T TIGR03149 123 HKDLCVGCQYCIAACPYRVRFIHPVTKS-------------ADKCNFCRDTNLAEGKLPACVESCPTKALTFGDLNDPN 188 (225)
T ss_pred EHHHCCCHHHHHHCCCCCCCEECCCCCC-------------CCCCCCCCCCHHHCCCCCCCHHHCCCCCEEEECCCCCC
T ss_conf 5686940418986199998354888896-------------87370860027567998871423877787882288981
No 69
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=98.50 E-value=4.5e-08 Score=69.29 Aligned_cols=46 Identities=48% Similarity=1.003 Sum_probs=35.3
Q ss_pred CCCCCEECCCCHH--HHHHCCCCCCCCCCCCCCCEEEEEEEEEHHHCCCCCCCHHHCCCCEE
Q ss_conf 8742213452232--53308832101224544733577888505555868872333783103
Q gi|254780861|r 59 GEERCIACKLCEA--ICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 (163)
Q Consensus 59 ~~ekCi~C~~C~~--~CP~~aI~i~~~~~~~~~~~~~~~~~id~~~Ci~Cg~Cv~vCP~~AI 118 (163)
++++|+||+.|.+ .|| +|..+ ++ + -.||. .|..||.|+++||++||
T Consensus 548 n~~vC~gCg~C~~~s~Cp--ai~~~------~~-k----~~id~-~Cngc~~C~~~CP~~AI 595 (595)
T TIGR03336 548 DQDKCIGCKKCIKELGCP--AIEPE------DK-E----AVIDP-LCTGCGVCAQICPFDAI 595 (595)
T ss_pred CHHHCCCCCCCCCCCCCC--EEEEC------CC-E----EEECC-CCCCCCCHHHHCCCCCC
T ss_conf 353278840003343782--17735------99-0----78885-05497744654889879
No 70
>TIGR00402 napF ferredoxin-type protein NapF; InterPro: IPR004496 Members of this family are the ferredoxin-type protein subunits of nitrate reductase. These NapF proteins are involved in electron transfer, and contain iron-sulphur centres similar to those of bacterial-type 4FE-4S ferredoxins.; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0006118 electron transport.
Probab=98.50 E-value=4e-08 Score=69.59 Aligned_cols=51 Identities=29% Similarity=0.761 Sum_probs=40.9
Q ss_pred CCCEECCCCHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEHHHCCCCCCCHHHCCCCEEE
Q ss_conf 42213452232533088321012245447335778885055558688723337831030
Q gi|254780861|r 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 (163)
Q Consensus 61 ekCi~C~~C~~~CP~~aI~i~~~~~~~~~~~~~~~~~id~~~Ci~Cg~Cv~vCP~~AI~ 119 (163)
.+|++|+.|+.|||++-|..... | ++ ...+|++-|.|||.|+++||..+++
T Consensus 39 a~CtrCg~C~saCennil~~g~~-----G--~p-~v~fdn~eC~fCgkCa~aCp~~~f~ 89 (161)
T TIGR00402 39 ARCTRCGECLSACENNILQKGDA-----G--YP-EVEFDNAECDFCGKCAEACPESLFY 89 (161)
T ss_pred EEECCCCCHHHHCCCCEEEECCC-----C--CE-EEEEECCCCCCCCHHHHHCCCCCCC
T ss_conf 63188434030178450651678-----8--50-6887568767221226428755578
No 71
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein CcoG; InterPro: IPR014116 Member of this ferredoxin-like protein family, include FixG, CcoG and RdxA,. They are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else; it is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum..
Probab=98.49 E-value=2.6e-08 Score=70.73 Aligned_cols=55 Identities=42% Similarity=0.976 Sum_probs=35.8
Q ss_pred CCCHHCCCEEEEE----EC--CC----CCCCEECCCCHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEHHHCCCCCCCHHH
Q ss_conf 6800057237874----05--88----74221345223253308832101224544733577888505555868872333
Q gi|254780861|r 43 TSPRFRGEHALRR----YP--NG----EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 (163)
Q Consensus 43 ~~~rfRG~~~l~~----~~--~~----~ekCi~C~~C~~~CP~~aI~i~~~~~~~~~~~~~~~~~id~~~Ci~Cg~Cv~v 112 (163)
..+.-||-+...+ ++ .| .--||.|.+|++|||++ |+|-.+ +-+ -||-||.|+|+
T Consensus 215 ~YD~~RGE~R~~~K~~~~~~~~g~~~~~GDCvdC~~CV~VCPTG-IDIRdG--------------lQl-ECInC~~CIDA 278 (474)
T TIGR02745 215 VYDEKRGEPRGPRKGKKDPKAPGDEKPLGDCVDCNLCVQVCPTG-IDIRDG--------------LQL-ECINCGLCIDA 278 (474)
T ss_pred ECCHHCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCC-EECCCC--------------CHH-HHHHHHHHHHH
T ss_conf 10430186568888875600147877478624776554242572-022334--------------246-54317768744
Q ss_pred C
Q ss_conf 7
Q gi|254780861|r 113 C 113 (163)
Q Consensus 113 C 113 (163)
|
T Consensus 279 C 279 (474)
T TIGR02745 279 C 279 (474)
T ss_pred H
T ss_conf 4
No 72
>PRK09898 hypothetical protein; Provisional
Probab=98.49 E-value=1.3e-07 Score=66.48 Aligned_cols=55 Identities=31% Similarity=0.752 Sum_probs=39.9
Q ss_pred CCCCCEECCCCHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEHHHCCCCCCCHHHCCCCEEECCCCCCC
Q ss_conf 87422134522325330883210122454473357788850555586887233378310303677356
Q gi|254780861|r 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEF 126 (163)
Q Consensus 59 ~~ekCi~C~~C~~~CP~~aI~i~~~~~~~~~~~~~~~~~id~~~Ci~Cg~Cv~vCP~~AI~~~~~~e~ 126 (163)
|+++||||+.|+.+||.+++.+..... ...+|.+|+.||++||++||.+.+.-|+
T Consensus 152 d~~~CigC~~C~~aCP~~~~~~~~~~~-------------~~~KC~lC~~Cv~~CP~~Al~~~~~~dl 206 (208)
T PRK09898 152 DHKRCIGCSACTTACPWMMATVNTESK-------------KSSKCVLCGECANACPTGALKIIEWKDI 206 (208)
T ss_pred EHHHCCCCCHHHHHCCCCCCEECCCCC-------------CCCCCCCHHHHHHHCCHHCEEEECHHHC
T ss_conf 777680411899739999857678889-------------6684868669998671201698248987
No 73
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.46 E-value=5.5e-08 Score=68.74 Aligned_cols=66 Identities=24% Similarity=0.526 Sum_probs=44.0
Q ss_pred CHHCCCEEEEEECCCCC---CCEECC--CCHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEHHHCCCCCCCHHHCCCCEEE
Q ss_conf 00057237874058874---221345--2232533088321012245447335778885055558688723337831030
Q gi|254780861|r 45 PRFRGEHALRRYPNGEE---RCIACK--LCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 (163)
Q Consensus 45 ~rfRG~~~l~~~~~~~e---kCi~C~--~C~~~CP~~aI~i~~~~~~~~~~~~~~~~~id~~~Ci~Cg~Cv~vCP~~AI~ 119 (163)
..|--++.+.+.. +.. .|-.|. -|+.+||++||..... ...+|..+||+|+.|+-+||++||.
T Consensus 36 ~~f~pr~~v~~~~-~~~~~v~c~~ce~apc~~~cp~~ai~~~~~-----------~v~~~~~~cigc~~c~~acp~ga~~ 103 (654)
T PRK12769 36 HHFHPRITVIKHQ-QQRSAVTCHHCEDAPCARSCPNGAISHVND-----------SIQVNQQKCIGCKSCVVACPFGTMQ 103 (654)
T ss_pred CCCCCCEEEEECC-CCCCCCCCCCCCCCCHHHHCCCCCEEECCC-----------EEEEECCCCCCCCCHHHCCCCCCEE
T ss_conf 5456646999258-853360202479981565098310585298-----------7998312166862166508988549
Q ss_pred CCC
Q ss_conf 367
Q gi|254780861|r 120 EGP 122 (163)
Q Consensus 120 ~~~ 122 (163)
|..
T Consensus 104 ~v~ 106 (654)
T PRK12769 104 IVL 106 (654)
T ss_pred EEE
T ss_conf 996
No 74
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.45 E-value=5.6e-08 Score=68.69 Aligned_cols=51 Identities=33% Similarity=0.733 Sum_probs=40.0
Q ss_pred CCEECC--CCHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEHHHCCCCCCCHHHCCCCEEECCCC
Q ss_conf 221345--22325330883210122454473357788850555586887233378310303677
Q gi|254780861|r 62 RCIACK--LCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 (163)
Q Consensus 62 kCi~C~--~C~~~CP~~aI~i~~~~~~~~~~~~~~~~~id~~~Ci~Cg~Cv~vCP~~AI~~~~~ 123 (163)
.|-.|. -|+.+||++||..... ..++|..+||+|+.|+-+||++||.|...
T Consensus 55 ~c~~ce~apc~~~cp~~a~~~~~~-----------~~~~~~~~cigc~~c~~~cp~~a~~~~~~ 107 (639)
T PRK12809 55 ACHHCNNAPCVTACPVNALTFQSD-----------SVQLDEQKCIGCKRCAIACPFGVVEMVDT 107 (639)
T ss_pred CCCCCCCCCHHHCCCCHHHEECCC-----------EEEEECCCCCCCCCHHHHCCCCCEEEEEC
T ss_conf 403469982554298034141387-----------49985032668632454189885388863
No 75
>PRK09476 napG quinol dehydrogenase periplasmic component; Provisional
Probab=98.42 E-value=1.8e-07 Score=65.52 Aligned_cols=54 Identities=31% Similarity=0.731 Sum_probs=28.2
Q ss_pred CCEECCCCHHHHHHCCCCCCCCCC-CCCCCEEEEEEEEEHHHCCCCC--CCHHHCCCCEE
Q ss_conf 221345223253308832101224-5447335778885055558688--72333783103
Q gi|254780861|r 62 RCIACKLCEAICPAQAITIESGPR-CHDGTRRTVRYDIDMIKCIYCG--LCQEACPVDAI 118 (163)
Q Consensus 62 kCi~C~~C~~~CP~~aI~i~~~~~-~~~~~~~~~~~~id~~~Ci~Cg--~Cv~vCP~~AI 118 (163)
.||.||+|+.+||.++|.+..... ...|+.+ |+-...-|-+|. .|+.+||++||
T Consensus 60 ~CirCG~Cv~aCPy~tl~la~~~~~~~~GTPy---~~pr~~pC~mC~dipCv~aCPTGAL 116 (254)
T PRK09476 60 ACIRCGLCVQACPYDTLKLATLASGLSAGTPY---FVARDIPCEMCEDIPCVKACPSGAL 116 (254)
T ss_pred HCCHHCCHHHHCCHHHEECCCCCCCCCCCCCE---ECCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 63032403655876243326666787478821---5556577204789753156886646
No 76
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=98.39 E-value=8.6e-08 Score=67.54 Aligned_cols=51 Identities=33% Similarity=0.930 Sum_probs=44.0
Q ss_pred CCCCCCEECCCCHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEHHHCCCCCCCHHHCCCCEEECCC
Q ss_conf 88742213452232533088321012245447335778885055558688723337831030367
Q gi|254780861|r 58 NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 (163)
Q Consensus 58 ~~~ekCi~C~~C~~~CP~~aI~i~~~~~~~~~~~~~~~~~id~~~Ci~Cg~Cv~vCP~~AI~~~~ 122 (163)
.|+++|+||+.|+. ||.+||+++. . .+|..+|.+||.|+-+||.+||.|.+
T Consensus 558 vde~~C~gC~~C~~-Cpf~ais~~k---a----------~v~~~~C~gCG~C~~aCp~gai~~~~ 608 (622)
T COG1148 558 VDEDKCTGCGICAE-CPFGAISVDK---A----------EVNPLRCKGCGICSAACPSGAIDLAG 608 (622)
T ss_pred CCHHHHCCCCCEEE-CCCCCEECCC---C----------CCCHHHHCCCCCHHHHCCCCCCHHCC
T ss_conf 46656067860212-7988553122---5----------46836737566314218736001316
No 77
>TIGR02951 DMSO_dmsB dimethylsulfoxide reductase, chain B; InterPro: IPR014297 This family consists of the iron-sulphur subunit, or chain B, of the anaerobic dimethyl sulphoxide reductase enzyme. Chains A and B are catalytic, while chain C is a membrane anchor..
Probab=98.38 E-value=7.5e-08 Score=67.91 Aligned_cols=56 Identities=36% Similarity=0.745 Sum_probs=44.6
Q ss_pred CCCCCEECCCCHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEHHHCCCCC---------CCHHHCCCCEEECCCCCCCC
Q ss_conf 8742213452232533088321012245447335778885055558688---------72333783103036773567
Q gi|254780861|r 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG---------LCQEACPVDAIVEGPNFEFA 127 (163)
Q Consensus 59 ~~ekCi~C~~C~~~CP~~aI~i~~~~~~~~~~~~~~~~~id~~~Ci~Cg---------~Cv~vCP~~AI~~~~~~e~a 127 (163)
|.++||||.-|+.+||-+|-+..+.. | .+++|-+|- .||++||..||-+++.=||-
T Consensus 94 d~~~CiGC~yC~waCPYgAPQy~~~~----G---------~m~KCDgC~D~~~~G~~P~CV~aCp~RaLdFGpidELr 158 (162)
T TIGR02951 94 DQDKCIGCRYCVWACPYGAPQYDEQQ----G---------VMSKCDGCVDRVEKGLRPACVDACPMRALDFGPIDELR 158 (162)
T ss_pred ECCCCCCCCCCCCCCCCCCCCCCCCC----C---------EEEECCCCHHHHHCCCCCCCHHHHHHHHHHCCCHHHHH
T ss_conf 08865343445645878876733347----7---------44421343678846887964123357674068817873
No 78
>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein. Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB.
Probab=98.37 E-value=1.3e-07 Score=66.39 Aligned_cols=50 Identities=40% Similarity=0.793 Sum_probs=41.3
Q ss_pred CCCCCEECCCCHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEHHHCCCCCCCHHHCCCCEEE
Q ss_conf 8742213452232533088321012245447335778885055558688723337831030
Q gi|254780861|r 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 (163)
Q Consensus 59 ~~ekCi~C~~C~~~CP~~aI~i~~~~~~~~~~~~~~~~~id~~~Ci~Cg~Cv~vCP~~AI~ 119 (163)
|.|-||.|..|+..||.+||.- |... |-.|..+|-+|-.|+-.|||+||-
T Consensus 8 dpeicircntce~tcpi~aith-------d~~n----yvv~~~~cn~c~~ci~pcptg~id 57 (411)
T TIGR03224 8 DPEICIRCNTCEETCPIDAITH-------DDRN----YVVKADVCNGCMACVSPCPTGAID 57 (411)
T ss_pred CCCCEEEECCHHHCCCCCEEEE-------CCCC----EEECCCCCCCCCCCCCCCCCCCCC
T ss_conf 9212224055542487660675-------7987----797420137551037989987664
No 79
>PRK10330 electron transport protein HydN; Provisional
Probab=98.32 E-value=1.9e-07 Score=65.49 Aligned_cols=50 Identities=32% Similarity=0.708 Sum_probs=39.8
Q ss_pred CCCEEC--CCCHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEHHHCCCCCCCHHHCCCCEEECC
Q ss_conf 422134--5223253308832101224544733577888505555868872333783103036
Q gi|254780861|r 61 ERCIAC--KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 (163)
Q Consensus 61 ekCi~C--~~C~~~CP~~aI~i~~~~~~~~~~~~~~~~~id~~~Ci~Cg~Cv~vCP~~AI~~~ 121 (163)
..|-.| -.|+.+||++||+-+ +|. -.+|..+||+||.|+.+||.+|+.+.
T Consensus 56 ~~C~HC~~p~C~~vCP~gAi~k~------~G~-----V~vd~~~CiGC~~C~~ACPyga~~~~ 107 (181)
T PRK10330 56 TVCRQCEDAPCANVCPNGAISRD------KGF-----VHVMQERCIGCKTCVVACPYGAMEVV 107 (181)
T ss_pred CCCCCCCCCCHHHHCCCCCEEEC------CCE-----EEECCCCCCCCCCHHHCCCCCCCCCC
T ss_conf 74879899733776877769974------995-----99854729272930133999983504
No 80
>PRK09476 napG quinol dehydrogenase periplasmic component; Provisional
Probab=98.21 E-value=3.6e-07 Score=63.75 Aligned_cols=64 Identities=31% Similarity=0.679 Sum_probs=42.6
Q ss_pred CCCCCE-----ECCCCHHHHHH--CCCCCCCCCCCCCCCEEEEEEEEEHHHCCCCCCCHHHCCCC--EEECCC
Q ss_conf 874221-----34522325330--88321012245447335778885055558688723337831--030367
Q gi|254780861|r 59 GEERCI-----ACKLCEAICPA--QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD--AIVEGP 122 (163)
Q Consensus 59 ~~ekCi-----~C~~C~~~CP~--~aI~i~~~~~~~~~~~~~~~~~id~~~Ci~Cg~Cv~vCP~~--AI~~~~ 122 (163)
|.+.|+ .|..|.++||. .||.++...+...++.......+|...|++||.|+.+|+++ ||...+
T Consensus 135 d~e~Cla~~Gl~CdvCyr~CPlid~AI~Le~~~n~rt~~ha~~~PvV~~d~CTGCG~CE~aCv~e~aaI~VlP 207 (254)
T PRK09476 135 DQENCLNFQGLRCDVCYRVCPLIDEAITLELKRNERTGKHAFFLPTVHSDACTGCGKCEKACVLEKAAIKVLP 207 (254)
T ss_pred CCCCEEEECCCCCCHHHHCCCCCCCCEEEEEECCCCCCCCCEEECEECCCCCCCCCCHHHCCCCCCCEEEEEC
T ss_conf 6414484018853858751899784058775427776765325120236657877312112278866158832
No 81
>COG0437 HybA Fe-S-cluster-containing hydrogenase components 1 [Energy production and conversion]
Probab=98.16 E-value=5.8e-07 Score=62.46 Aligned_cols=48 Identities=35% Similarity=0.679 Sum_probs=33.1
Q ss_pred CCHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEHHHCCCCCCCHHHCCCCEEECCCCC
Q ss_conf 223253308832101224544733577888505555868872333783103036773
Q gi|254780861|r 68 LCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124 (163)
Q Consensus 68 ~C~~~CP~~aI~i~~~~~~~~~~~~~~~~~id~~~Ci~Cg~Cv~vCP~~AI~~~~~~ 124 (163)
-|+.+||++|+.... .+|- -.+|..+||+||.|+.+||.+|.++..+.
T Consensus 76 pCv~vCPtgA~~k~~----~dGi-----V~vd~d~CIGC~yCi~ACPyga~~~~~~~ 123 (203)
T COG0437 76 PCVKVCPTGALFKRE----EDGI-----VLVDKDLCIGCGYCIAACPYGAPQFNPDK 123 (203)
T ss_pred CCCCCCCCCCEEEEC----CCCE-----EEECCCCCCCCHHHHHHCCCCCCEECCCC
T ss_conf 633547887538835----8977-----99658722473477864998885657666
No 82
>COG4656 RnfC Predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Energy production and conversion]
Probab=98.16 E-value=4.6e-08 Score=69.22 Aligned_cols=61 Identities=28% Similarity=0.668 Sum_probs=38.1
Q ss_pred CCEECCCCHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEHHHCCCCCCCHHHCCCCEEECCCCC
Q ss_conf 221345223253308832101224544733577888505555868872333783103036773
Q gi|254780861|r 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124 (163)
Q Consensus 62 kCi~C~~C~~~CP~~aI~i~~~~~~~~~~~~~~~~~id~~~Ci~Cg~Cv~vCP~~AI~~~~~~ 124 (163)
-||.|++|+.+||.+.+--+-.... .+......-..++..||-||.|..+||.. |.+.+.+
T Consensus 366 sCi~C~~C~d~CP~~Llp~ql~~~a-~~~~~~e~~~~~l~dCIECg~Ca~vCPs~-iplvq~~ 426 (529)
T COG4656 366 SCIRCSLCADACPVNLLPQQLYWFA-KGEQHDEEEEHNLLDCIECGACAYVCPSN-IPLVQYF 426 (529)
T ss_pred CCCCHHHHHHHCCCCCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHCCCHHCCCCC-CCHHHHH
T ss_conf 1504777877475125888866776-54245688887766525507311007777-8889999
No 83
>TIGR03478 DMSO_red_II_bet DMSO reductase family type II enzyme, iron-sulfur subunit. This model represents the iron-sulfur subunit, typically called the beta subunit, of various proteins that also contain a molybdopterin subunit and a heme b subunit. The group includes two distinct but very closely related periplasmic proteins of anaerobic respiration, selenate reductase and chlorate reductase. Other members of this family include dimethyl sulphide dehydrogenase and ethylbenzene dehydrogenase.
Probab=98.15 E-value=6.8e-07 Score=62.06 Aligned_cols=51 Identities=37% Similarity=0.702 Sum_probs=29.4
Q ss_pred CEECC--CCHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEHHHCCCCCCCHHHCCCCEEECCC
Q ss_conf 21345--2232533088321012245447335778885055558688723337831030367
Q gi|254780861|r 63 CIACK--LCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 (163)
Q Consensus 63 Ci~C~--~C~~~CP~~aI~i~~~~~~~~~~~~~~~~~id~~~Ci~Cg~Cv~vCP~~AI~~~~ 122 (163)
|-.|. .|+.+||++||.- +.++|-- .||..+||+|+.|+.+||-+|+.+..
T Consensus 131 C~HC~~p~Cv~~CPtgA~yK----r~edGiV-----~vD~d~CiGc~~Cv~aCPY~~~~~n~ 183 (321)
T TIGR03478 131 CNHCTNPACLAACPTGAIYK----REEDGIV-----LVDQERCKGYRYCVEACPYKKVYFNP 183 (321)
T ss_pred CCCCCCCHHHCCCCCCCEEE----ECCCCEE-----EECCCCCCCHHHHHHCCCCCCCEECC
T ss_conf 46999982325388887488----2698159-----96405080357999619999956367
No 84
>TIGR03287 methan_mark_16 putative methanogenesis marker 16 metalloprotein. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. This protein is a predicted to bind FeS clusters, based on the presence of two copies of the Fer4 domain (pfam00037), with each copy having four Cys residues invariant across all members.
Probab=98.14 E-value=9.4e-07 Score=61.19 Aligned_cols=49 Identities=41% Similarity=0.912 Sum_probs=39.5
Q ss_pred CCCCCEECCCC--HHHHHHCCCCCCCCCCCCCCCEEEEEEEEEHHHCCCCCCCHHHCCCCEEECC
Q ss_conf 87422134522--3253308832101224544733577888505555868872333783103036
Q gi|254780861|r 59 GEERCIACKLC--EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 (163)
Q Consensus 59 ~~ekCi~C~~C--~~~CP~~aI~i~~~~~~~~~~~~~~~~~id~~~Ci~Cg~Cv~vCP~~AI~~~ 121 (163)
+.++|+.|..| +.+||.+||.- ++ .+|..+|..||.|+.+||.++..+.
T Consensus 300 ~p~~C~~C~~C~~~~~CP~~ai~~-------~~-------~~~~~~Cf~CG~C~~~C~~~~~~~~ 350 (391)
T TIGR03287 300 NPERCENCDPCLVEEACPVPAIKK-------DG-------TLNTEDCFGCGYCAEICPGGAFEVN 350 (391)
T ss_pred CCCCCCCCCCHHHHHCCCCCCCCC-------CC-------CCCHHHCCCCCCHHCCCCCCCEEEE
T ss_conf 710045574003544088420146-------77-------3562222576500000677625640
No 85
>TIGR03478 DMSO_red_II_bet DMSO reductase family type II enzyme, iron-sulfur subunit. This model represents the iron-sulfur subunit, typically called the beta subunit, of various proteins that also contain a molybdopterin subunit and a heme b subunit. The group includes two distinct but very closely related periplasmic proteins of anaerobic respiration, selenate reductase and chlorate reductase. Other members of this family include dimethyl sulphide dehydrogenase and ethylbenzene dehydrogenase.
Probab=98.10 E-value=1.2e-06 Score=60.64 Aligned_cols=51 Identities=27% Similarity=0.608 Sum_probs=40.1
Q ss_pred CCCCCEECCCCHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEHHHCCCCC---------CCHHHCCCCEEECCC
Q ss_conf 8742213452232533088321012245447335778885055558688---------723337831030367
Q gi|254780861|r 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG---------LCQEACPVDAIVEGP 122 (163)
Q Consensus 59 ~~ekCi~C~~C~~~CP~~aI~i~~~~~~~~~~~~~~~~~id~~~Ci~Cg---------~Cv~vCP~~AI~~~~ 122 (163)
|.++||||+.|+.+||.+++...... ++ ..+|+||- .||+.||..|-.++.
T Consensus 160 D~d~CiGc~~Cv~aCPY~~~~~n~~~----~k---------~eKC~fC~~Rie~G~~PaCv~tC~gr~R~~G~ 219 (321)
T TIGR03478 160 DQERCKGYRYCVEACPYKKVYFNPQS----QK---------SEKCIGCYPRIEKGIAPACVKQCPGRIRFVGY 219 (321)
T ss_pred CCCCCCCHHHHHHCCCCCCCEECCCC----CC---------CCCCCCCHHHHHCCCCCCCCCCCCCCCEEEEC
T ss_conf 40508035799961999995636766----86---------56588898898789998411107777777531
No 86
>TIGR01582 FDH-beta formate dehydrogenase, beta subunit; InterPro: IPR006470 The sequences in this group represent the beta subunit of the gamma-proteobacterial formate dehydrogenase. This subunit contains four 4Fe-4S clusters and is involved in transmitting electrons from the alpha subunit (IPR006443 from INTERPRO) at the periplasmic space to the gamma subunit which spans the cytoplasmic membrane . In addition to the gamma proteobacteria, a sequence from Aquifex aolicus falls within this group. This appears to be the case for the alpha, gamma and epsilon (accessory protein IPR006452 from INTERPRO) chains as well. ; GO: 0008863 formate dehydrogenase activity, 0045333 cellular respiration, 0016021 integral to membrane.
Probab=98.08 E-value=2.2e-06 Score=58.90 Aligned_cols=51 Identities=33% Similarity=0.716 Sum_probs=39.1
Q ss_pred CCCCCEECCCCHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEHHHCCCCC---------CCHHHCCCCEEECCC
Q ss_conf 8742213452232533088321012245447335778885055558688---------723337831030367
Q gi|254780861|r 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG---------LCQEACPVDAIVEGP 122 (163)
Q Consensus 59 ~~ekCi~C~~C~~~CP~~aI~i~~~~~~~~~~~~~~~~~id~~~Ci~Cg---------~Cv~vCP~~AI~~~~ 122 (163)
+.+|||||+.|..=||.+--.+....+. + -+|.||- .||-.|||+||+++.
T Consensus 132 ~h~kCIGCgyCi~GCPFnIPR~~k~dnr------~-------yKCtlC~DRVsvG~ePACvKtCPT~ai~FG~ 191 (293)
T TIGR01582 132 DHEKCIGCGYCIVGCPFNIPRIDKVDNR------A-------YKCTLCIDRVSVGQEPACVKTCPTNAISFGF 191 (293)
T ss_pred CCCCEECCCCCCCCCCCCCCCCCCCCCC------C-------EEECCCCCEEECCCCCCCCCCCCCCCCCCCC
T ss_conf 1586000673025878888888744575------1-------1104540000137896500127764311587
No 87
>PRK09623 vorD 2-ketoisovalerate ferredoxin oxidoreductase subunit delta; Reviewed
Probab=97.99 E-value=4e-06 Score=57.35 Aligned_cols=38 Identities=32% Similarity=0.522 Sum_probs=33.4
Q ss_pred CCCCCEEEEEEEEEHHHCCCCCCCHHHCCCCEEECCCC
Q ss_conf 54473357788850555586887233378310303677
Q gi|254780861|r 86 CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 (163)
Q Consensus 86 ~~~~~~~~~~~~id~~~Ci~Cg~Cv~vCP~~AI~~~~~ 123 (163)
...|+|+..+..+|..+|+.||.|+.+||.+||.+.++
T Consensus 36 n~tG~WR~~rPvvD~eKCi~Cg~C~~~CP~~AI~~~~d 73 (105)
T PRK09623 36 NFTGDWRTFIPVVDESKCVKCYICWKFCPEPAIYIKED 73 (105)
T ss_pred CCCCCCEEECCCCCHHHCCCCCCHHHHCCCCCEEECCC
T ss_conf 89986235247124625848513464709980897499
No 88
>PRK12387 formate hydrogenlyase complex iron-sulfur subunit; Provisional
Probab=97.90 E-value=3.7e-06 Score=57.52 Aligned_cols=56 Identities=23% Similarity=0.464 Sum_probs=39.9
Q ss_pred CCCCCEECCCCHHHHHHCCCCCCCCCC--CCCCCEEEEEEEEEHHHCCCCCCCHHHCC
Q ss_conf 874221345223253308832101224--54473357788850555586887233378
Q gi|254780861|r 59 GEERCIACKLCEAICPAQAITIESGPR--CHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 (163)
Q Consensus 59 ~~ekCi~C~~C~~~CP~~aI~i~~~~~--~~~~~~~~~~~~id~~~Ci~Cg~Cv~vCP 114 (163)
+..+||.||+|+.+||.+||.|...-. ..+.......-.+.+.+|..||..-...+
T Consensus 71 d~~rCifCG~C~evCPt~AI~lt~efElA~~~k~dl~~~~~~~~~~C~~CG~~f~~~~ 128 (178)
T PRK12387 71 NLGRCIFCGRCEEVCPTAAIKLSQEYELAVWKKEDLLQQSRFALCNCRVCGRPFAVQK 128 (178)
T ss_pred CCCCCCCCCHHHHHCCCCCCCCCHHHHHHHCCHHHCEEEEEEEEEECCCCCCCCCCHH
T ss_conf 3040668671566688242233618775412553445676870221563478055436
No 89
>PRK10882 hydrogenase 2 protein HybA; Provisional
Probab=97.90 E-value=1e-05 Score=54.83 Aligned_cols=50 Identities=30% Similarity=0.705 Sum_probs=29.8
Q ss_pred CCEECC--CCHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEHHHCCCCCCCHHHCCCCEEEC
Q ss_conf 221345--22325330883210122454473357788850555586887233378310303
Q gi|254780861|r 62 RCIACK--LCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 (163)
Q Consensus 62 kCi~C~--~C~~~CP~~aI~i~~~~~~~~~~~~~~~~~id~~~Ci~Cg~Cv~vCP~~AI~~ 120 (163)
.|-.|. .|+.+||++||..+ ..+|- ..+|..+|++|+.|+.+||.++..+
T Consensus 112 ~C~HC~~P~C~~~CP~gA~~k~----~~~G~-----V~~d~~~CiGC~~C~~aCP~~iP~~ 163 (329)
T PRK10882 112 QCMHCVDPNCVSVCPVSALTKD----PKTGI-----VHYDKDVCTGCRYCMVACPFNVPKY 163 (329)
T ss_pred CCCCCCCCHHHHHCCCCCEEEC----CCCCE-----EEECCCEECCCCHHHHCCCCCCCCC
T ss_conf 7979899866740997755876----89954-----9971570077106754399999742
No 90
>TIGR02951 DMSO_dmsB dimethylsulfoxide reductase, chain B; InterPro: IPR014297 This family consists of the iron-sulphur subunit, or chain B, of the anaerobic dimethyl sulphoxide reductase enzyme. Chains A and B are catalytic, while chain C is a membrane anchor..
Probab=97.86 E-value=5.3e-06 Score=56.57 Aligned_cols=51 Identities=37% Similarity=0.680 Sum_probs=38.6
Q ss_pred CEECC--CCHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEHHHCCCCCCCHHHCCCCEEECCC
Q ss_conf 21345--2232533088321012245447335778885055558688723337831030367
Q gi|254780861|r 63 CIACK--LCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 (163)
Q Consensus 63 Ci~C~--~C~~~CP~~aI~i~~~~~~~~~~~~~~~~~id~~~Ci~Cg~Cv~vCP~~AI~~~~ 122 (163)
|=.|. .|+++||++|++ ++.+||-- ..|..+||+|..|+.+||-+|=+..+
T Consensus 65 CNHC~dP~Cv~~CPTGAm~----KR~~dG~V-----~Vd~~~CiGC~yC~waCPYgAPQy~~ 117 (162)
T TIGR02951 65 CNHCADPVCVKNCPTGAMY----KREEDGLV-----LVDQDKCIGCRYCVWACPYGAPQYDE 117 (162)
T ss_pred EECCCCCCEECCCCCCCCC----CCCCCCEE-----EEECCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 1058738610117886311----11689637-----87088653434456458788767333
No 91
>PRK00941 acetyl-CoA decarbonylase/synthase complex subunit alpha; Validated
Probab=97.83 E-value=1.2e-06 Score=60.43 Aligned_cols=62 Identities=26% Similarity=0.536 Sum_probs=38.1
Q ss_pred CCCEECCCCHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEHHHCCCCCCCHHHCCCCEEECCCCCC
Q ss_conf 42213452232533088321012245447335778885055558688723337831030367735
Q gi|254780861|r 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 (163)
Q Consensus 61 ekCi~C~~C~~~CP~~aI~i~~~~~~~~~~~~~~~~~id~~~Ci~Cg~Cv~vCP~~AI~~~~~~e 125 (163)
.+|+.|+.|.++||+.---.+.-.....|.-. .+.--+..|++||.|+++||.+ |...+-++
T Consensus 402 ~~Ct~C~~C~~~CPn~l~I~eam~~a~~gdls--~l~~l~d~CigCgrCE~~C~k~-ipI~~~i~ 463 (779)
T PRK00941 402 KKCTECGWCVRACPNELPIPEAMEAAAKGDLS--KLADLYDVCIGCGRCEQVCPKN-IPILSMIE 463 (779)
T ss_pred HHCCCCCHHHHHCCCCCCHHHHHHHHHCCCCH--HHHHHHHHHHHHHHHHHHCCCC-CCHHHHHH
T ss_conf 86432322665398868627899988607807--8899988620020187754468-85588999
No 92
>TIGR02910 sulfite_red_A sulfite reductase, subunit A; InterPro: IPR014259 This entry represents subunit A, one of the three subunits of the anaerobic sulphite reductase of Salmonella, and close homologues from various Clostridium species, where the three-gene neighbourhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substrates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulphite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulphide gas from sulphite..
Probab=97.81 E-value=5.2e-06 Score=56.64 Aligned_cols=106 Identities=24% Similarity=0.490 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHH------HHCCCCCCCCCCCCCCCCCCHHCCCEEEE---EECCCCCCCEECCCCHHHHHH-CCCCCCCC
Q ss_conf 999999999999------84069852257875775680005723787---405887422134522325330-88321012
Q gi|254780861|r 14 KEFVGAFFLCLR------YFFKAKTTINYPFEKGSTSPRFRGEHALR---RYPNGEERCIACKLCEAICPA-QAITIESG 83 (163)
Q Consensus 14 ~~~~~gl~~t~k------~~~~~~~T~~YP~e~~~~~~rfRG~~~l~---~~~~~~ekCi~C~~C~~~CP~-~aI~i~~~ 83 (163)
..+++++.+--+ ..-....+|.-|+.--.-|..-+-...+. |++.+ .|||+||.|-.+||+ -|-+|+..
T Consensus 176 ~~~~~~~~~eee~~~~P~fv~EN~~~V~~p~svcrdPqki~~a~i~~~~~W~eY~-sRCI~CGRCn~vCPTCtCf~mqDv 254 (346)
T TIGR02910 176 EEAFKEVELEEELEVEPSFVSENKVKVKIPDSVCRDPQKIRDAKIFKSDLWDEYD-SRCIACGRCNTVCPTCTCFSMQDV 254 (346)
T ss_pred HHHHHCCCCCEECCCCCCEECCCEEEEECCHHHCCCCCCCCCEEEECCCCHHHHH-HCCCCCCCCCCCCCCCCCCCEEEE
T ss_conf 9997206721000014642202402743170211673334410121120202120-034457776888876333303545
Q ss_pred ---CCCCCCCEEEE---------------------------------------EEEEEHHHCCCCCCCHHHCCCCEEECC
Q ss_conf ---24544733577---------------------------------------888505555868872333783103036
Q gi|254780861|r 84 ---PRCHDGTRRTV---------------------------------------RYDIDMIKCIYCGLCQEACPVDAIVEG 121 (163)
Q Consensus 84 ---~~~~~~~~~~~---------------------------------------~~~id~~~Ci~Cg~Cv~vCP~~AI~~~ 121 (163)
+++..|.|+-. ++-+. -.|++||.|-+.||.- |++|
T Consensus 255 fY~dN~~~GERRRvWASC~vdGFt~mAGGh~FR~~~G~RmRfkvmHKv~DYkkR~Gye-HMCVGCGRCDD~CpeY-IsFS 332 (346)
T TIGR02910 255 FYKDNKKAGERRRVWASCMVDGFTNMAGGHGFREKKGQRMRFKVMHKVNDYKKRNGYE-HMCVGCGRCDDICPEY-ISFS 332 (346)
T ss_pred EEECCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCC-CEEECCCCCCCCCCCH-HHHH
T ss_conf 5503678887232211530588655557765325788611234310211000016863-0032477746667203-4565
Q ss_pred C
Q ss_conf 7
Q gi|254780861|r 122 P 122 (163)
Q Consensus 122 ~ 122 (163)
.
T Consensus 333 n 333 (346)
T TIGR02910 333 N 333 (346)
T ss_pred H
T ss_conf 5
No 93
>cd01916 ACS_1 Acetyl-CoA synthase (ACS), also known as acetyl-CoA decarbonylase, is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA. ACS forms a heterotetramer with carbon monoxide dehydrogenase (CODH) consisting of two ACS and two CODH subunits. CODH reduces carbon dioxide to carbon monoxide and ACS then synthesizes acetyl-CoA from carbon monoxide, CoA, and a methyl group donated by another protein (CoFeSP). ACS has three structural domains, an N-terminal rossman fold domain with a helical region at its N-terminus which interacts with CODH, and two alpha + beta fold domains. A Ni-Fe-S center referred to as the A-cluster is located in the C-terminal domain. A large cavity exists between the three domains which may bind CoA.
Probab=97.77 E-value=2.1e-06 Score=59.00 Aligned_cols=63 Identities=24% Similarity=0.518 Sum_probs=38.2
Q ss_pred CCCEECCCCHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEHHHCCCCCCCHHHCCCCEEECCCCCCC
Q ss_conf 422134522325330883210122454473357788850555586887233378310303677356
Q gi|254780861|r 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEF 126 (163)
Q Consensus 61 ekCi~C~~C~~~CP~~aI~i~~~~~~~~~~~~~~~~~id~~~Ci~Cg~Cv~vCP~~AI~~~~~~e~ 126 (163)
.+|+.|+.|.++||+..--.+.-.....|.-. .+.--+..|++||.|+++||.+ |...+-++.
T Consensus 365 ~~Ct~C~~C~~~CPn~l~I~eam~~a~~gdls--~l~~l~d~CvgCgrCE~~C~k~-ipI~~~i~~ 427 (731)
T cd01916 365 AKCTDCGWCTRACPNSLRIKEAMEAAKEGDFS--GLADLFDQCVGCGRCEQECPKE-IPIINMIEK 427 (731)
T ss_pred HHCCCCCHHHHHCCCCCCHHHHHHHHHCCCCH--HHHHHHHHHHHHHHHHHHCCCC-CCHHHHHHH
T ss_conf 86532322665498868638899987607807--8899988620020187754468-855889999
No 94
>TIGR00273 TIGR00273 iron-sulfur cluster binding protein; InterPro: IPR004452 Members of this family have a perfect 4Fe-4S binding motif C-x(2)-C-x(2)-C-x(3)-CP followed by either a perfect or imperfect (the first Cys replaced by Ser) second copy. Members probably bind two 4fe-4S iron-sulphur clusters..
Probab=97.76 E-value=3.5e-06 Score=57.71 Aligned_cols=58 Identities=29% Similarity=0.586 Sum_probs=33.4
Q ss_pred CCEECCCCHHHHHHC-CCCCCCCCCCCCC------CEEE---EEE-EEEHHHCCCCCCCHHHCCCCEEECC
Q ss_conf 221345223253308-8321012245447------3357---788-8505555868872333783103036
Q gi|254780861|r 62 RCIACKLCEAICPAQ-AITIESGPRCHDG------TRRT---VRY-DIDMIKCIYCGLCQEACPVDAIVEG 121 (163)
Q Consensus 62 kCi~C~~C~~~CP~~-aI~i~~~~~~~~~------~~~~---~~~-~id~~~Ci~Cg~Cv~vCP~~AI~~~ 121 (163)
.||-||.|.+.||+= -|-=.+......| +... ..| +|- ..|..||.|.+|||+. |-|.
T Consensus 297 ~CiRCG~C~n~CPvY~~~Ggh~YGs~Y~GPiG~v~Sp~l~g~~dYk~lP-ylssLCg~C~evCPv~-IpL~ 365 (450)
T TIGR00273 297 ACIRCGACLNECPVYRHIGGHAYGSIYPGPIGAVVSPLLGGYNDYKELP-YLSSLCGACREVCPVK-IPLA 365 (450)
T ss_pred HHHHHHHHHCCCCHHHCCCCCCCCCCCCCHHHEEHHHHHHHHHHHHCCC-CHHCHHCCCCCCCCCC-CCHH
T ss_conf 1330123411486011146602453158712311113541044331123-3103410678888511-0879
No 95
>TIGR02060 aprB adenylylsulfate reductase, beta subunit; InterPro: IPR011802 During dissimilatory sulphate reduction and sulphur oxidation, adenylylsulphate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulphite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. This entry describes the beta subunit of APS reductase, which shares a common evolutionary origin with other iron-sulphur cluster-binding proteins..
Probab=97.73 E-value=7.2e-06 Score=55.78 Aligned_cols=62 Identities=27% Similarity=0.581 Sum_probs=49.2
Q ss_pred CCCCCEECC-----CCHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEHHHCCCCCCCHHHCCCCEEECCCCCCCCC
Q ss_conf 874221345-----2232533088321012245447335778885055558688723337831030367735675
Q gi|254780861|r 59 GEERCIACK-----LCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFAT 128 (163)
Q Consensus 59 ~~ekCi~C~-----~C~~~CP~~aI~i~~~~~~~~~~~~~~~~~id~~~Ci~Cg~Cv~vCP~~AI~~~~~~e~a~ 128 (163)
+.+||-||+ +|+.+||++...++++.. ..|.+.-..|=-|-.||-+||.+||..-..-++|-
T Consensus 6 ~~~kCDGC~~~e~t~C~~ICP~DlM~lD~~~~--------kAYN~EP~~CWECYSCVK~CP~~AI~vRgY~DfaP 72 (138)
T TIGR02060 6 DPTKCDGCKALEKTACVYICPNDLMILDTEKM--------KAYNREPDMCWECYSCVKICPQGAIDVRGYADFAP 72 (138)
T ss_pred CCCCCCCCCCCCCCCEEECCCHHHHHHCCHHH--------HHHCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCC
T ss_conf 78456677876631111108302223050245--------54168766631210001218887411266403057
No 96
>TIGR03379 glycerol3P_GlpC glycerol-3-phosphate dehydrogenase, anaerobic, C subunit. Members of this protein family are the membrane-anchoring, non-catalytic C subunit, product of the glpC gene, of a three-subunit, FAD-dependent, anaerobic glycerol-3-phosphate dehydrogenase. GlpC lasks classical hydrophobic transmembrane helices; Cole, et al suggest interaction with the membrane may involve amphipathic helices. GlcC has conserved Cys-containing motifs suggestive of iron-sulfur binding. This complex is found mostly in Escherichia coli and closely related species.
Probab=97.72 E-value=6.1e-06 Score=56.21 Aligned_cols=57 Identities=35% Similarity=0.776 Sum_probs=33.6
Q ss_pred CCCCEECCCCHHHHHHCCCC-CCCC--CCCCCCCEE----EEEEEEEHHHCCCCCCCHHHCCCC
Q ss_conf 74221345223253308832-1012--245447335----778885055558688723337831
Q gi|254780861|r 60 EERCIACKLCEAICPAQAIT-IESG--PRCHDGTRR----TVRYDIDMIKCIYCGLCQEACPVD 116 (163)
Q Consensus 60 ~ekCi~C~~C~~~CP~~aI~-i~~~--~~~~~~~~~----~~~~~id~~~Ci~Cg~Cv~vCP~~ 116 (163)
.++||.||.|..+||+-... .... ....+|.+. ...++--+..|+.||.|+.+||.+
T Consensus 4 ~d~Ci~CG~C~~~CP~~~~~~~~~g~~~~~~~g~~~~l~~~~~~~~~l~~C~~C~~C~~~CP~g 67 (397)
T TIGR03379 4 FESCIKCTVCTVYCPVAKANPLYPGPKQAGPDGERLRLKSAELYDEALKYCTNCKRCEVACPSD 67 (397)
T ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCHHHCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 1227588988373868545788887254084467665036443415616382768836538799
No 97
>PRK13409 putative ATPase RIL; Provisional
Probab=97.70 E-value=2.1e-05 Score=52.87 Aligned_cols=52 Identities=37% Similarity=0.759 Sum_probs=32.2
Q ss_pred CCCCEECCCCHHHHHH-----CCCCCCCCCCCCCCCEEEEEEEEEHHHCCCCCCCHHHCCCCEEECCC
Q ss_conf 7422134522325330-----88321012245447335778885055558688723337831030367
Q gi|254780861|r 60 EERCIACKLCEAICPA-----QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 (163)
Q Consensus 60 ~ekCi~C~~C~~~CP~-----~aI~i~~~~~~~~~~~~~~~~~id~~~Ci~Cg~Cv~vCP~~AI~~~~ 122 (163)
..||- .-|.+.||. .||.+... +++ + .|.-..||+||.||..||++||...+
T Consensus 14 p~kc~--~ec~~~cp~~~~g~~~i~~~~~----~~~--~---~i~e~lc~gcgicvkkcpf~ai~iin 70 (590)
T PRK13409 14 PKKCN--YECIKYCPVVRTGEETIVIDEE----DGK--P---VISEELCIGCGICVKKCPFDAISIVN 70 (590)
T ss_pred CCCHH--HHHHHHCCCCCCCCEEEEECCC----CCC--C---EEEHHHCCCCCCCCCCCCCCEEEEEC
T ss_conf 75246--7888759985678616997078----896--1---55053356654211448830057614
No 98
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=97.69 E-value=2.5e-05 Score=52.50 Aligned_cols=59 Identities=31% Similarity=0.576 Sum_probs=39.2
Q ss_pred EEEECCCCCCCEECCCCHHHHHHC-----CCCCCCCCCCCCCCEEEEEEEEEHHHCCCCCCCHHHCCCCEEECCC
Q ss_conf 874058874221345223253308-----8321012245447335778885055558688723337831030367
Q gi|254780861|r 53 LRRYPNGEERCIACKLCEAICPAQ-----AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 (163)
Q Consensus 53 l~~~~~~~ekCi~C~~C~~~CP~~-----aI~i~~~~~~~~~~~~~~~~~id~~~Ci~Cg~Cv~vCP~~AI~~~~ 122 (163)
+.+|..-..||- ..|.+.||.. ||.+... +|+. -|--..|++||.|+.-||++||...+
T Consensus 8 vd~D~C~PkkC~--~eC~~yCP~vrtg~~~I~i~~~----~gkp-----vIsE~lCiGCGICvkkCPF~AI~Ivn 71 (591)
T COG1245 8 VDYDRCQPKKCG--YECIKYCPVVRTGKETIEIDED----TGKP-----VISEELCIGCGICVKKCPFDAISIVN 71 (591)
T ss_pred EEHHCCCCCCCC--HHHHHCCCCCCCCCEEEEECCC----CCCC-----EEEHHHHCCCHHHHCCCCCCEEEEEC
T ss_conf 632105864242--1145309984578726995477----7984-----36764423203431348866178843
No 99
>PRK09624 porD pyuvate ferredoxin oxidoreductase subunit delta; Reviewed
Probab=97.67 E-value=2.8e-05 Score=52.12 Aligned_cols=38 Identities=29% Similarity=0.506 Sum_probs=32.9
Q ss_pred CCCCCEEEEEEEEEHHHCCCCCCCHHHCCCCEEECCCC
Q ss_conf 54473357788850555586887233378310303677
Q gi|254780861|r 86 CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 (163)
Q Consensus 86 ~~~~~~~~~~~~id~~~Ci~Cg~Cv~vCP~~AI~~~~~ 123 (163)
...|+|+..+..+|..+|+.||+|+.+||.+||.+.++
T Consensus 36 ~~tg~wR~~rPvid~dkCi~Cg~C~~~CP~~AI~~de~ 73 (105)
T PRK09624 36 NKTGSWRVFMPEFNRDKCVRCYLCYIYCPEPAIYLDEE 73 (105)
T ss_pred CCCCCCEEECCEECHHHCCCCCCHHHHCCCCEEEECCC
T ss_conf 57878636553874426828212242509560798799
No 100
>PRK11168 glpC sn-glycerol-3-phosphate dehydrogenase subunit C; Provisional
Probab=97.66 E-value=8e-06 Score=55.50 Aligned_cols=57 Identities=32% Similarity=0.736 Sum_probs=33.7
Q ss_pred CCCCEECCCCHHHHHHCCCCCC-CC--CCCCCCCEEE----EEEEEEHHHCCCCCCCHHHCCCC
Q ss_conf 7422134522325330883210-12--2454473357----78885055558688723337831
Q gi|254780861|r 60 EERCIACKLCEAICPAQAITIE-SG--PRCHDGTRRT----VRYDIDMIKCIYCGLCQEACPVD 116 (163)
Q Consensus 60 ~ekCi~C~~C~~~CP~~aI~i~-~~--~~~~~~~~~~----~~~~id~~~Ci~Cg~Cv~vCP~~ 116 (163)
.++|+.||.|..+||+-.+.-. .. .....+.+.. ..++--+..|+.||.|+.+||.+
T Consensus 10 ~d~C~~CG~C~~~CP~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~ld~C~~C~~C~~~CP~~ 73 (400)
T PRK11168 10 FDSCIKCTVCTTACPVARVNPLYPGPKQAGPDGERLRLKDPALYDEALKYCSNCKRCEVACPSG 73 (400)
T ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCCHHCCCHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 9866688988131887324688888101370777644036423346615374748837427199
No 101
>TIGR00402 napF ferredoxin-type protein NapF; InterPro: IPR004496 Members of this family are the ferredoxin-type protein subunits of nitrate reductase. These NapF proteins are involved in electron transfer, and contain iron-sulphur centres similar to those of bacterial-type 4FE-4S ferredoxins.; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0006118 electron transport.
Probab=97.63 E-value=4.6e-05 Score=50.84 Aligned_cols=31 Identities=23% Similarity=0.405 Sum_probs=23.8
Q ss_pred HCCCEEEEEECCCCCCCEECCCCHHHHHHCCCCC
Q ss_conf 0572378740588742213452232533088321
Q gi|254780861|r 47 FRGEHALRRYPNGEERCIACKLCEAICPAQAITI 80 (163)
Q Consensus 47 fRG~~~l~~~~~~~ekCi~C~~C~~~CP~~aI~i 80 (163)
--|.+.+.-| ++ -|.-|+.|+.|||..+++-
T Consensus 60 ~~G~p~v~fd-n~--eC~fCgkCa~aCp~~~f~P 90 (161)
T TIGR00402 60 DAGYPEVEFD-NA--ECDFCGKCAEACPESLFYP 90 (161)
T ss_pred CCCCEEEEEE-CC--CCCCCCHHHHHCCCCCCCC
T ss_conf 7885068875-68--7672212264287555788
No 102
>PRK08222 hydrogenase 4 subunit H; Validated
Probab=97.61 E-value=2.1e-05 Score=52.90 Aligned_cols=50 Identities=26% Similarity=0.563 Sum_probs=34.0
Q ss_pred CCCCCEECCCCHHHHHHCCCCCCCCCCC--CCCCEEEEEEEEEHHHCCCCCC
Q ss_conf 8742213452232533088321012245--4473357788850555586887
Q gi|254780861|r 59 GEERCIACKLCEAICPAQAITIESGPRC--HDGTRRTVRYDIDMIKCIYCGL 108 (163)
Q Consensus 59 ~~ekCi~C~~C~~~CP~~aI~i~~~~~~--~~~~~~~~~~~id~~~Ci~Cg~ 108 (163)
+..+||.||+|+.+||++||.+..+-.. .+.......-.+.+.+|..||.
T Consensus 71 d~grCIfCG~C~EvCPt~AI~lt~efElA~~~k~dl~~~~~~~~~~C~~Cg~ 122 (181)
T PRK08222 71 YLGRCIYCGRCEEVCPTRAIQLTNNFELTVTNKADLYTRATFHLQRCSRCER 122 (181)
T ss_pred CCCCCCCCCHHHHHCCCCCCCCCCCEEECCCCHHHHHHEEEEEEEECCCCCC
T ss_conf 2661678772441488142067761232225666531123674532364599
No 103
>COG1152 CdhA CO dehydrogenase/acetyl-CoA synthase alpha subunit [Energy production and conversion]
Probab=97.56 E-value=4.5e-06 Score=57.03 Aligned_cols=65 Identities=26% Similarity=0.463 Sum_probs=40.8
Q ss_pred CCCEECCCCHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEHHHCCCCCCCHHHCCCCEEECCCCCCCCC
Q ss_conf 42213452232533088321012245447335778885055558688723337831030367735675
Q gi|254780861|r 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFAT 128 (163)
Q Consensus 61 ekCi~C~~C~~~CP~~aI~i~~~~~~~~~~~~~~~~~id~~~Ci~Cg~Cv~vCP~~AI~~~~~~e~a~ 128 (163)
.+|+.||-|.++||+.--..+.-+...+|..... .--+.+|+.||.|+.+||.+ |...+-.+.+.
T Consensus 400 ~kc~~cG~C~~~CP~~l~i~eam~~A~~Gd~~~l--~~l~d~C~~C~rCEq~Cpk~-ipi~nm~~~a~ 464 (772)
T COG1152 400 RKCTYCGNCMRACPNELDIPEAMEYAAKGDFSKL--EDLHDVCIGCGRCEQVCPKN-IPILNMIEKAA 464 (772)
T ss_pred HHCCCCCCHHCCCCCCCCHHHHHHHHHCCCHHHH--HHHHHHHHHHHHHHHHCCCC-CCHHHHHHHHH
T ss_conf 8665445211039754664778887651775777--88887743110365517656-74235787888
No 104
>COG1139 Uncharacterized conserved protein containing a ferredoxin-like domain [Energy production and conversion]
Probab=97.49 E-value=3.3e-05 Score=51.70 Aligned_cols=58 Identities=31% Similarity=0.530 Sum_probs=33.3
Q ss_pred CCEECCCCHHHHHHC-CCCCCCCCCCCCCCE-EEEE--------EEEEHHHCCCCCCCHHHCCCCEEEC
Q ss_conf 221345223253308-832101224544733-5778--------8850555586887233378310303
Q gi|254780861|r 62 RCIACKLCEAICPAQ-AITIESGPRCHDGTR-RTVR--------YDIDMIKCIYCGLCQEACPVDAIVE 120 (163)
Q Consensus 62 kCi~C~~C~~~CP~~-aI~i~~~~~~~~~~~-~~~~--------~~id~~~Ci~Cg~Cv~vCP~~AI~~ 120 (163)
.||.||.|.+.||+= .|-=.+......|-. .... +.-....|..||.|.+|||.+ |.+
T Consensus 309 ~CIRCGaC~n~CPvY~~iGgh~y~~~Y~GPiG~v~s~~~~g~~~~~~~~~~c~lcg~C~evCPv~-Ipl 376 (459)
T COG1139 309 RCIRCGACLNHCPVYRHIGGHAYGSIYPGPIGVVWSPILGGYDAAGDLPYACSLCGACTEVCPVK-IPL 376 (459)
T ss_pred HHHCCHHHHHCCHHHHHCCCEECCCCCCCCCCEEEEHHHCCHHHCCCCCHHHHHCCCCCCCCCCC-CCH
T ss_conf 76000076513815665367202574688642263000044332346212443315777768888-988
No 105
>COG0479 FrdB Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit [Energy production and conversion]
Probab=97.48 E-value=7.6e-06 Score=55.63 Aligned_cols=57 Identities=32% Similarity=0.684 Sum_probs=33.3
Q ss_pred CCCCCEECCCCHHHHHHCCCCC--------------CCCCCCCCCC-EEEEEEEEE--HHHCCCCCCCHHHCCCC
Q ss_conf 8742213452232533088321--------------0122454473-357788850--55558688723337831
Q gi|254780861|r 59 GEERCIACKLCEAICPAQAITI--------------ESGPRCHDGT-RRTVRYDID--MIKCIYCGLCQEACPVD 116 (163)
Q Consensus 59 ~~ekCi~C~~C~~~CP~~aI~i--------------~~~~~~~~~~-~~~~~~~id--~~~Ci~Cg~Cv~vCP~~ 116 (163)
+...||.||.|..+||+-...- ....+ ..++ ........+ ..+|.+|+.|++|||.+
T Consensus 140 ~~~~CI~Cg~C~s~CP~~~~~~~f~GPa~l~~a~R~~~D~r-d~~~~~R~~~~~~~~gv~~C~~~~~C~~vCPK~ 213 (234)
T COG0479 140 ELSECILCGCCTAACPSIWWNPDFLGPAALRQAYRFLADSR-DEGTAERLKILEDPDGVWRCTTCGNCTEVCPKG 213 (234)
T ss_pred HHHHCCCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCC-CCCHHHHHHHCCCCCCEECCCCCCCCCCCCCCC
T ss_conf 55436214440422875323657768899999999854976-534188998504788775261615231428999
No 106
>PRK06259 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Provisional
Probab=97.45 E-value=1.4e-05 Score=54.09 Aligned_cols=56 Identities=34% Similarity=0.852 Sum_probs=34.0
Q ss_pred CCCCEECCCCHHHHHHCCCC-------C------CCCCCCCCCCEEEEEEEEEHHHCCCCCCCHHHCCCC
Q ss_conf 74221345223253308832-------1------012245447335778885055558688723337831
Q gi|254780861|r 60 EERCIACKLCEAICPAQAIT-------I------ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 (163)
Q Consensus 60 ~ekCi~C~~C~~~CP~~aI~-------i------~~~~~~~~~~~~~~~~~id~~~Ci~Cg~Cv~vCP~~ 116 (163)
...||.|+.|..+||+-... | ...++ .++++....++-.+-.|+.||.|++|||.+
T Consensus 136 ~~~CI~C~~C~s~Cp~~~~~dy~GP~~~~~~~Rf~~DpR-D~~~r~~~a~~~gl~~Ct~C~~C~~vCPK~ 204 (491)
T PRK06259 136 LRGCIECLSCISMCPAIKVSDYPGPTFMRQLARFAFDPR-DEGDREKEAIDEGLYNCTTCGKCVEVCPKE 204 (491)
T ss_pred HHHCHHHCCHHHHCCCCCCCCCCCHHHHHHHHHHCCCCC-CCCCHHHHHHHCCCCCCCCCCCHHHHCCCC
T ss_conf 763456432374487675777868899999998616887-760068999877974376358044438876
No 107
>PRK08318 dihydropyrimidine dehydrogenase; Validated
Probab=97.43 E-value=4.4e-05 Score=50.98 Aligned_cols=28 Identities=32% Similarity=0.837 Sum_probs=23.4
Q ss_pred CCCCCEECCCCHHHHHH-CCCCCCCCCCC
Q ss_conf 87422134522325330-88321012245
Q gi|254780861|r 59 GEERCIACKLCEAICPA-QAITIESGPRC 86 (163)
Q Consensus 59 ~~ekCi~C~~C~~~CP~-~aI~i~~~~~~ 86 (163)
++++|+||++|+.+||+ +||+|...+..
T Consensus 374 ~~~~C~gC~LC~~vCPv~~~i~m~~~~~~ 402 (413)
T PRK08318 374 NDEECVGCNLCAHVCPVEGCITMGEVKFG 402 (413)
T ss_pred CCCCCCCCCCCCCCCCCCCCEEEEECCCC
T ss_conf 76647986770201897676576566877
No 108
>TIGR00314 cdhA CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit; InterPro: IPR004460 Acetyl-CoA decarbonylase/synthase (ACDS) is a multienzyme complex (carbon monoxide dehydrogenase is a synonym). The ACDS complex carries out an unusual reaction involving the reversible cleavage and synthesis of acetyl-CoA in methanogens. The family contains the 4Fe-4S ferredoxin domain [C-x(2)-C-x(2)-C-x(3)-C-[PEG]] between residues 448-462 of the model.; GO: 0018492 carbon-monoxide dehydrogenase (acceptor) activity, 0006084 acetyl-CoA metabolic process.
Probab=97.42 E-value=7.3e-06 Score=55.73 Aligned_cols=65 Identities=25% Similarity=0.476 Sum_probs=40.4
Q ss_pred CCCEECCCCHHHHHHCCCCCC---CCCCCCCCCEEEEEEEEEHHHCCCCCCCHHHCCCCEEECCCCCCCCCC
Q ss_conf 422134522325330883210---122454473357788850555586887233378310303677356757
Q gi|254780861|r 61 ERCIACKLCEAICPAQAITIE---SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129 (163)
Q Consensus 61 ekCi~C~~C~~~CP~~aI~i~---~~~~~~~~~~~~~~~~id~~~Ci~Cg~Cv~vCP~~AI~~~~~~e~a~~ 129 (163)
.+|+-|+-|..+||+.--..+ .+...+|-++.... =...|+.||.|+.+||.+ |...+-+..+.+
T Consensus 408 ~~CT~Cg~C~~~CP~~l~v~~am~~A~~tGd~skL~~~---~~~~C~aCgrCEq~Cpkn-ipIv~m~~~a~~ 475 (795)
T TIGR00314 408 KKCTQCGNCTRACPNSLRVKEAMAKAEKTGDLSKLEEL---LEEVCYACGRCEQVCPKN-IPIVSMVTKAGE 475 (795)
T ss_pred HHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHH---HHHHCCCCCCCHHCCCCC-CCEEEHHHHHHH
T ss_conf 83678877544587865179999999734886689999---998445567513027898-824513246647
No 109
>TIGR00276 TIGR00276 iron-sulfur cluster binding protein, putative; InterPro: IPR004453 This is a family of putative iron-sulphur cluster binding proteins. These proteins contain the 4Fe-4S ferredoxins iron-sulphur binding domain..
Probab=97.42 E-value=0.00012 Score=48.19 Aligned_cols=57 Identities=32% Similarity=0.679 Sum_probs=38.2
Q ss_pred CCCCEECCCCHHHHHHCCCCCCCCCCCCCCCE-------------EEEEEEEEH-HHCCCCCCCHHHCCCC-EEE
Q ss_conf 74221345223253308832101224544733-------------577888505-5558688723337831-030
Q gi|254780861|r 60 EERCIACKLCEAICPAQAITIESGPRCHDGTR-------------RTVRYDIDM-IKCIYCGLCQEACPVD-AIV 119 (163)
Q Consensus 60 ~ekCi~C~~C~~~CP~~aI~i~~~~~~~~~~~-------------~~~~~~id~-~~Ci~Cg~Cv~vCP~~-AI~ 119 (163)
++.|=.|..|..+||++||.- +. ..|-.+ .+..|.-+. +.-.+|+.|.+|||.+ -..
T Consensus 171 ~~~CG~C~~C~~aCPT~AlVe-p~--~vD~~~Cis~~~~~~~~ea~p~e~~~~~~~~~~GCd~Cq~vCPwnq~~~ 242 (297)
T TIGR00276 171 EERCGKCTKCLDACPTQALVE-PE--VVDARRCISYLTIEKEAEALPKEFASNLGGRVYGCDICQEVCPWNQKLG 242 (297)
T ss_pred CCCCCCCHHHHHCCCCHHHCC-CC--CCCCCCCCCEEEEECCCCCCHHHHHHHHCCCEEECCCCCCCCCCCCCCC
T ss_conf 457873224663285202006-64--3453224300244044543538876531783673475422065646645
No 110
>PRK08348 NADH-plastoquinone oxidoreductase subunit; Provisional
Probab=97.42 E-value=5.5e-05 Score=50.35 Aligned_cols=21 Identities=33% Similarity=1.015 Sum_probs=10.2
Q ss_pred CCCEECCCCHHHHHHCCCCCC
Q ss_conf 422134522325330883210
Q gi|254780861|r 61 ERCIACKLCEAICPAQAITIE 81 (163)
Q Consensus 61 ekCi~C~~C~~~CP~~aI~i~ 81 (163)
.+||+||+|+.+||.+||++.
T Consensus 73 ~~Ci~Cg~C~~~CP~~AI~~t 93 (111)
T PRK08348 73 GRCVFCGQCVDVCPTGALQMS 93 (111)
T ss_pred CCCCCCCCCCCCCCCCCEECC
T ss_conf 908538875773772836876
No 111
>TIGR00397 mauM_napG MauM/NapG family ferredoxin-type protein; InterPro: IPR004494 MauM ferredoxin-type protein is involved in methylamine utilization. NapG ferredoxin-type protein is associated with nitrate reductase activity.; GO: 0006118 electron transport.
Probab=97.41 E-value=4.3e-05 Score=51.03 Aligned_cols=97 Identities=22% Similarity=0.344 Sum_probs=49.1
Q ss_pred HHHHHHHHHH-HHHHCCCCC--CCCCCCCCCCCCCHHCCCEEEEEECCCCCCCEECCCCHHHHHHCCCCC-CCCCCCCCC
Q ss_conf 9999999999-998406985--225787577568000572378740588742213452232533088321-012245447
Q gi|254780861|r 14 KEFVGAFFLC-LRYFFKAKT--TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI-ESGPRCHDG 89 (163)
Q Consensus 14 ~~~~~gl~~t-~k~~~~~~~--T~~YP~e~~~~~~rfRG~~~l~~~~~~~ekCi~C~~C~~~CP~~aI~i-~~~~~~~~~ 89 (163)
+++++.+++. +-.+|.+.+ |..=+....--||..--...+ ..-||.||+|+.+||.+.+++ +|....+-|
T Consensus 9 ~~~~R~vGvA~~~~~~~~All~~~~a~~A~~lRPPGALpE~dF------~aACv~CGLCV~~CP~d~L~LA~WsD~A~~G 82 (213)
T TIGR00397 9 KDVARAVGVAVVGGIFGAALLRSRPAVAARVLRPPGALPEKDF------LAACVRCGLCVEACPYDILKLASWSDPAPLG 82 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCH------HCCCCCCCCCCCCCCCCHHHHHCCCCCCCCC
T ss_conf 9998761247777778877630487323535458888877210------2001004662210641135441147777788
Q ss_pred CEEEEEEEEEHHHCCCCCC--CHHHCCCCEEE
Q ss_conf 3357788850555586887--23337831030
Q gi|254780861|r 90 TRRTVRYDIDMIKCIYCGL--CQEACPVDAIV 119 (163)
Q Consensus 90 ~~~~~~~~id~~~Ci~Cg~--Cv~vCP~~AI~ 119 (163)
+-+-+ --..=|-.|-- |+.+|||+||.
T Consensus 83 TPfF~---~R~~PC~MC~DiPC~RACPTGAL~ 111 (213)
T TIGR00397 83 TPFFT---AREEPCRMCKDIPCARACPTGALD 111 (213)
T ss_pred CCCCC---CCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 88104---788863347687864568865454
No 112
>COG1143 NuoI Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Energy production and conversion]
Probab=97.40 E-value=5.9e-05 Score=50.16 Aligned_cols=25 Identities=36% Similarity=0.906 Sum_probs=21.7
Q ss_pred CCCCCEECCCCHHHHHHCCCCCCCC
Q ss_conf 8742213452232533088321012
Q gi|254780861|r 59 GEERCIACKLCEAICPAQAITIESG 83 (163)
Q Consensus 59 ~~ekCi~C~~C~~~CP~~aI~i~~~ 83 (163)
+..+||-||+|+.+||++||.+...
T Consensus 93 n~grCIfCg~C~e~CPt~Al~~t~~ 117 (172)
T COG1143 93 NLGRCIFCGLCVEVCPTGALVLTPE 117 (172)
T ss_pred CCCCCCCCCCHHHHCCHHHHCCCCC
T ss_conf 3351261175142396656227741
No 113
>PRK11274 glcF glycolate oxidase iron-sulfur subunit; Provisional
Probab=97.39 E-value=2.1e-05 Score=52.96 Aligned_cols=57 Identities=23% Similarity=0.667 Sum_probs=34.3
Q ss_pred CCCCEECCCCHHHHHHCCCCCCCCCCCCCC-----------CEEEEEEEEEHHHCCCCCCCHHHCCCCE
Q ss_conf 742213452232533088321012245447-----------3357788850555586887233378310
Q gi|254780861|r 60 EERCIACKLCEAICPAQAITIESGPRCHDG-----------TRRTVRYDIDMIKCIYCGLCQEACPVDA 117 (163)
Q Consensus 60 ~ekCi~C~~C~~~CP~~aI~i~~~~~~~~~-----------~~~~~~~~id~~~Ci~Cg~Cv~vCP~~A 117 (163)
-++||.||.|..+||+-..+-... ....| .-........+..|+.||.|..+||.+.
T Consensus 22 v~~Cv~CG~C~~~CPsy~~t~~E~-~spRGRi~Llr~~l~g~~~~~~~~~~ld~Cl~C~~C~~~CP~gV 89 (407)
T PRK11274 22 LRKCVHCGFCTATCPTYQLLGDEL-DGPRGRIYLIKQVLEGAEVTEKTQLHLDRCLTCRNCETTCPSGV 89 (407)
T ss_pred HHHCCCCCCCCCCCCCCHHCCCCC-CCCHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 997787886636698821027877-79509999999998299887789998475718587465378999
No 114
>PRK12385 fumarate reductase iron-sulfur subunit; Provisional
Probab=97.38 E-value=1.9e-05 Score=53.17 Aligned_cols=57 Identities=30% Similarity=0.665 Sum_probs=33.1
Q ss_pred CCCCEECCCCHHHHHHCCCCC--------C------CCCCCCCCCEEEEE--EEEEHHHCCCCCCCHHHCCCC
Q ss_conf 742213452232533088321--------0------12245447335778--885055558688723337831
Q gi|254780861|r 60 EERCIACKLCEAICPAQAITI--------E------SGPRCHDGTRRTVR--YDIDMIKCIYCGLCQEACPVD 116 (163)
Q Consensus 60 ~ekCi~C~~C~~~CP~~aI~i--------~------~~~~~~~~~~~~~~--~~id~~~Ci~Cg~Cv~vCP~~ 116 (163)
...||.||.|..+||+-...- . ...+......+... -+--..+|..|+.|+++||.+
T Consensus 145 ~~~CI~Cg~C~saCp~~~~~~~flGPaal~~a~Rf~~D~RD~~~~eRl~~l~~~~Gv~~C~~~~~C~~vCPK~ 217 (243)
T PRK12385 145 FSGCINCGLCYAACPQFGLNPEFIGPAAITLAHRYNLDSRDHGKKERMAQLNGQNGVWSCTFVGYCSEVCPKH 217 (243)
T ss_pred HHHHHHCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
T ss_conf 1266552387642887566866559999999998604976423688999730579811798858613729489
No 115
>TIGR00397 mauM_napG MauM/NapG family ferredoxin-type protein; InterPro: IPR004494 MauM ferredoxin-type protein is involved in methylamine utilization. NapG ferredoxin-type protein is associated with nitrate reductase activity.; GO: 0006118 electron transport.
Probab=97.38 E-value=5.5e-05 Score=50.38 Aligned_cols=66 Identities=30% Similarity=0.661 Sum_probs=44.6
Q ss_pred CCCEEEEEECCCCCCC-----EECCCCHHHHHH--CCCCCCCCCCCCCCCEEEEEEEEEHHHCCCCCCCHHHCCCC--EE
Q ss_conf 5723787405887422-----134522325330--88321012245447335778885055558688723337831--03
Q gi|254780861|r 48 RGEHALRRYPNGEERC-----IACKLCEAICPA--QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD--AI 118 (163)
Q Consensus 48 RG~~~l~~~~~~~ekC-----i~C~~C~~~CP~--~aI~i~~~~~~~~~~~~~~~~~id~~~Ci~Cg~Cv~vCP~~--AI 118 (163)
.|.-+|. |.|.| ..|.+|+++||. +||+++..+. ..+......+|-.+|++||.|+..|=-. ||
T Consensus 122 MGVAVLV----gHETCLNYKGL~CSICVRVCPI~G~AISL~~~~~---~~~~l~IP~V~S~~CTGCGTCEK~CVLs~AAI 194 (213)
T TIGR00397 122 MGVAVLV----GHETCLNYKGLNCSICVRVCPIRGEAISLKPIEN---ERGLLQIPTVDSAKCTGCGTCEKHCVLSEAAI 194 (213)
T ss_pred CCEEEEE----CCEEECCCCCCCEEEEEEECCCCCCEECCCHHHH---CCCEEEECCEECCCCCCCCCCCCCEECCCHHH
T ss_conf 7127882----5601003478732377873254366000211210---58777614032577677887433103000243
Q ss_pred EC
Q ss_conf 03
Q gi|254780861|r 119 VE 120 (163)
Q Consensus 119 ~~ 120 (163)
.+
T Consensus 195 Rv 196 (213)
T TIGR00397 195 RV 196 (213)
T ss_pred HH
T ss_conf 00
No 116
>PRK05113 electron transport complex protein RnfB; Provisional
Probab=97.37 E-value=6.9e-05 Score=49.76 Aligned_cols=27 Identities=52% Similarity=0.867 Sum_probs=23.9
Q ss_pred EEEHHHCCCCCCCHHHCCCCEEECCCC
Q ss_conf 850555586887233378310303677
Q gi|254780861|r 97 DIDMIKCIYCGLCQEACPVDAIVEGPN 123 (163)
Q Consensus 97 ~id~~~Ci~Cg~Cv~vCP~~AI~~~~~ 123 (163)
.||-..|++||.|+++||+|||.+..+
T Consensus 109 ~i~~~~CiGcg~Cv~~CP~dAI~~~~~ 135 (184)
T PRK05113 109 FIDEDNCIGCTKCIQACPVDAIVGATK 135 (184)
T ss_pred EECCCCCCCCCHHHHHCCCCCEECCCC
T ss_conf 886524888681120199462776899
No 117
>PRK12575 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=97.37 E-value=1.1e-05 Score=54.64 Aligned_cols=56 Identities=21% Similarity=0.509 Sum_probs=31.6
Q ss_pred CCCEECCCCHHHHHHCCCCCC----C-----------CCCCCCCCEEEEEEEE--EHHHCCCCCCCHHHCCCC
Q ss_conf 422134522325330883210----1-----------2245447335778885--055558688723337831
Q gi|254780861|r 61 ERCIACKLCEAICPAQAITIE----S-----------GPRCHDGTRRTVRYDI--DMIKCIYCGLCQEACPVD 116 (163)
Q Consensus 61 ekCi~C~~C~~~CP~~aI~i~----~-----------~~~~~~~~~~~~~~~i--d~~~Ci~Cg~Cv~vCP~~ 116 (163)
..||+||.|+.+||+-...-+ + ..+......+.....- .+.+|..|+.|+++||.+
T Consensus 144 ~~CI~Cg~C~saCp~~~~~~~~f~GP~al~~a~r~~~D~RD~~~~erl~~l~~~~g~~~C~~~~~C~~vCPK~ 216 (235)
T PRK12575 144 YECILCACCSSACPSYWWNPDKFVGPAGLLQAYRFIVDSRDDASAARLDDLEDPYRLFRCRTIMNCVDVCPKG 216 (235)
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCEECCCCCCCCCCCCCCC
T ss_conf 8755033388664661008535608688887766215863145999999841789850898858824628789
No 118
>PRK12577 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=97.35 E-value=2.7e-05 Score=52.26 Aligned_cols=58 Identities=26% Similarity=0.628 Sum_probs=33.8
Q ss_pred CCCCCEECCCCHHHHHHCCCCC--------------CCCCCCCCCCEEEEEEEEE---HHHCCCCCCCHHHCCCC
Q ss_conf 8742213452232533088321--------------0122454473357788850---55558688723337831
Q gi|254780861|r 59 GEERCIACKLCEAICPAQAITI--------------ESGPRCHDGTRRTVRYDID---MIKCIYCGLCQEACPVD 116 (163)
Q Consensus 59 ~~ekCi~C~~C~~~CP~~aI~i--------------~~~~~~~~~~~~~~~~~id---~~~Ci~Cg~Cv~vCP~~ 116 (163)
+...||.||.|..+||+-...- ....+......+...+.-+ .-+|..|+.|+++||.+
T Consensus 150 ~~~~CIlCg~C~SaCp~~~~n~dflGPaal~kA~Rf~~DsRD~~~~eRL~~~~~~~~GvW~C~~c~~C~~vCPK~ 224 (330)
T PRK12577 150 QTGNCILCGACYSECNAREVNPEFVGPHALAKAQRLVADSRDTDTEQRLELYNQGTAGVWGCTRCYYCNSVCPME 224 (330)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCEECCCCCCCCCCCCCCC
T ss_conf 667470106310518774448776379999999987148776750778998537888865286227430509699
No 119
>TIGR02066 dsrB sulfite reductase, dissimilatory-type beta subunit; InterPro: IPR011808 Dissimilatory sulphite reductase catalyzes the six-electron reduction of sulphite to sulphide, as the terminal reaction in dissimilatory sulphate reduction. It remains unclear however, whether trithionate and thiosulphate serve as intermediate compounds to sulphide, or as end products of sulphite reduction . Sulphite reductase is a multisubunit enzyme composed of dimers of either alpha/beta or alpha/beta/gamma subunits, each containing a siroheme and iron sulphur cluster prosthetic centre . Found in sulphate-reducing bacteria, these genes are commonly located in a unidirectional gene cluster . This entry describes the beta subunit of sulphite reductase.; GO: 0018551 hydrogensulfite reductase activity, 0051539 4 iron 4 sulfur cluster binding, 0006118 electron transport.
Probab=97.34 E-value=5.9e-05 Score=50.19 Aligned_cols=45 Identities=33% Similarity=0.750 Sum_probs=31.7
Q ss_pred CHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEHHHCCCCCCCHHHCCCC
Q ss_conf 232533088321012245447335778885055558688723337831
Q gi|254780861|r 69 CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 (163)
Q Consensus 69 C~~~CP~~aI~i~~~~~~~~~~~~~~~~~id~~~Ci~Cg~Cv~vCP~~ 116 (163)
=+.+||+.||...... -.++++. ...+|-.+||+||.|=+.||.=
T Consensus 210 ~Va~CPtgAl~p~kv~-~~~~~~~--~l~v~~~kCi~CG~Cy~~Cpa~ 254 (366)
T TIGR02066 210 VVAACPTGALKPRKVR-IVEGEKK--SLEVDEEKCIYCGNCYTMCPAM 254 (366)
T ss_pred EEEECCHHHCCCCEEE-EECCCCC--EEEECCCEEEECCCCCCCCCCC
T ss_conf 9944770005532566-5467334--5898473111027745531278
No 120
>TIGR02486 RDH reductive dehalogenase; InterPro: IPR012832 This entry represents a family of corrin and 8-iron Fe-S cluster-containing reductive dehalogenases found primarily in halorespiring microorganisms such as Dehalococcoides ethenogenes which contains as many as 17 enzymes of this type with varying substrate ranges. One example of a characterised enzyme is the tetrachloroethene reductive dehalogenase (1.97.1.8 from EC) which also acts on trichloroethene converting it to dichloroethene..
Probab=97.32 E-value=3.9e-05 Score=51.26 Aligned_cols=67 Identities=30% Similarity=0.681 Sum_probs=41.5
Q ss_pred CCCEECCCCHHHHHHCCCCCCCCCCCCCC-------CEEEE------EEE-----EEHHHCC-----CCCCCHHHCCCC-
Q ss_conf 42213452232533088321012245447-------33577------888-----5055558-----688723337831-
Q gi|254780861|r 61 ERCIACKLCEAICPAQAITIESGPRCHDG-------TRRTV------RYD-----IDMIKCI-----YCGLCQEACPVD- 116 (163)
Q Consensus 61 ekCi~C~~C~~~CP~~aI~i~~~~~~~~~-------~~~~~------~~~-----id~~~Ci-----~Cg~Cv~vCP~~- 116 (163)
+=|--|+.||.+||.+||+-+..+...|- ..... .+. -+...|. .||.|+.+||++
T Consensus 222 ~FC~tC~kCAd~CP~~aI~~~~~~~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Cg~C~~~CpFNs 301 (338)
T TIGR02486 222 KFCETCGKCADECPSGAISKEGEPRTWDVEGPSVSGKKPNGENNPGKKWQFDGWRCDLFKCANEGGGGCGVCQAVCPFNS 301 (338)
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCEEECCCCC
T ss_conf 87665566642286213257888841222474357775576227730688877432413214667888721134245221
Q ss_pred -EEEC-CCCCCCC
Q ss_conf -0303-6773567
Q gi|254780861|r 117 -AIVE-GPNFEFA 127 (163)
Q Consensus 117 -AI~~-~~~~e~a 127 (163)
+..- +-.|++.
T Consensus 302 f~~~~~s~~H~~~ 314 (338)
T TIGR02486 302 FTKKPNSWVHDVV 314 (338)
T ss_pred EECCCCCEEEHHH
T ss_conf 0236861231346
No 121
>PRK08640 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=97.32 E-value=1.5e-05 Score=53.82 Aligned_cols=60 Identities=23% Similarity=0.459 Sum_probs=33.8
Q ss_pred CCCCEECCCCHHHHHHCCCC--------C------CCCCCCCC--CCEEEEEE-EEEHHHCCCCCCCHHHCCCCEEEC
Q ss_conf 74221345223253308832--------1------01224544--73357788-850555586887233378310303
Q gi|254780861|r 60 EERCIACKLCEAICPAQAIT--------I------ESGPRCHD--GTRRTVRY-DIDMIKCIYCGLCQEACPVDAIVE 120 (163)
Q Consensus 60 ~ekCi~C~~C~~~CP~~aI~--------i------~~~~~~~~--~~~~~~~~-~id~~~Ci~Cg~Cv~vCP~~AI~~ 120 (163)
...||.||.|..+||+-... + ...+.... ..+..... +--+.+|..||.|++|||.+ |..
T Consensus 149 ~~~CI~Cg~C~saCp~~~~~~~f~GPaal~~a~r~~~dp~~d~~~~eRl~~~~~~~G~~~C~~~~~C~~vCPKg-I~~ 225 (252)
T PRK08640 149 LSKCMTCGCCLEACPNVNEKSDFIGPAAISQVRLFNAHPTGEMHKEERLRALMGDGGIAGCGNSQNCVRVCPKG-IPL 225 (252)
T ss_pred HHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCEECCCCCCCCCCCCCCC-CCH
T ss_conf 56666540232237612136000207999999861128887721899999964789820798968702408889-998
No 122
>PRK05950 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=97.32 E-value=1e-05 Score=54.87 Aligned_cols=57 Identities=25% Similarity=0.496 Sum_probs=31.8
Q ss_pred CCCCEECCCCHHHHHHCCC----CCCC-----CC----CCCCCC--EEEEEEE--EEHHHCCCCCCCHHHCCCC
Q ss_conf 7422134522325330883----2101-----22----454473--3577888--5055558688723337831
Q gi|254780861|r 60 EERCIACKLCEAICPAQAI----TIES-----GP----RCHDGT--RRTVRYD--IDMIKCIYCGLCQEACPVD 116 (163)
Q Consensus 60 ~ekCi~C~~C~~~CP~~aI----~i~~-----~~----~~~~~~--~~~~~~~--id~~~Ci~Cg~Cv~vCP~~ 116 (163)
...||+||.|..+||+-.- .+-+ .- .+-|.. .+..... --...|..|+.|+++||.+
T Consensus 143 ~~~CI~Cg~C~saCp~~~~~~~~flGP~al~~a~r~~~D~Rd~~~~eRl~~l~~~~G~~~C~~~~~C~~vCPK~ 216 (235)
T PRK05950 143 LYECILCACCSTSCPSFWWNPDKFLGPAALLQAYRFIADSRDEATGERLDILDDPFGVFRCHTIMNCVEVCPKG 216 (235)
T ss_pred HHHHHHHCCHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCEECCCCCCCCCCCCCCC
T ss_conf 87614121157449665027756608899999987546876502999999860778810798958725628789
No 123
>TIGR03048 PS_I_psaC photosystem I iron-sulfur protein PsaC. Members of this family are PsaC, an essential component of photosystem I (PS-I) reaction center in Cyanobacteria and chloroplasts. This small protein, about 80 amino acids in length, contains two copies of the ferredoxin-like 4Fe-4S binding site (pfam00037) and therefore eight conserved Cys residues. This protein is also called photosystem I subunit VII.
Probab=97.29 E-value=7e-05 Score=49.71 Aligned_cols=21 Identities=38% Similarity=1.148 Sum_probs=11.2
Q ss_pred CCCEECCCCHHHHHHCCCCCC
Q ss_conf 422134522325330883210
Q gi|254780861|r 61 ERCIACKLCEAICPAQAITIE 81 (163)
Q Consensus 61 ekCi~C~~C~~~CP~~aI~i~ 81 (163)
|+||||+.|+.+||++++++.
T Consensus 45 edCIGC~~CE~aCPtdaLsir 65 (80)
T TIGR03048 45 EDCVGCKRCESACPTDFLSVR 65 (80)
T ss_pred CCCCCCCHHHHCCCCCCCEEE
T ss_conf 005562134430898731358
No 124
>TIGR01944 rnfB electron transport complex, RnfABCDGE type, B subunit; InterPro: IPR010207 The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in Escherichia coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This entry describes the B subunit.; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding, 0006118 electron transport.
Probab=97.29 E-value=4.8e-05 Score=50.74 Aligned_cols=29 Identities=48% Similarity=0.777 Sum_probs=25.0
Q ss_pred EEEEHHHCCCCCCCHHHCCCCEEECCCCC
Q ss_conf 88505555868872333783103036773
Q gi|254780861|r 96 YDIDMIKCIYCGLCQEACPVDAIVEGPNF 124 (163)
Q Consensus 96 ~~id~~~Ci~Cg~Cv~vCP~~AI~~~~~~ 124 (163)
=-||-..||+|-.|+.+||+|||+-+..+
T Consensus 120 A~I~E~~CIGCTKCiqaCPVDAIVGa~k~ 148 (213)
T TIGR01944 120 ALIDEENCIGCTKCIQACPVDAIVGAAKA 148 (213)
T ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCH
T ss_conf 88536768485422345885301067860
No 125
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=97.26 E-value=6.9e-05 Score=49.76 Aligned_cols=21 Identities=33% Similarity=0.825 Sum_probs=15.6
Q ss_pred HCCCCCCCHHHCCCCEEECCC
Q ss_conf 558688723337831030367
Q gi|254780861|r 102 KCIYCGLCQEACPVDAIVEGP 122 (163)
Q Consensus 102 ~Ci~Cg~Cv~vCP~~AI~~~~ 122 (163)
.|+.|+.|+++||.+||....
T Consensus 507 ~C~~C~~Cv~vCP~~ai~~~~ 527 (560)
T PRK12771 507 NCFECDNCYGFCPQDAVIKLG 527 (560)
T ss_pred CCCCCCCHHHHCCCCCCCCCC
T ss_conf 821646575528432102467
No 126
>PRK02651 photosystem I subunit VII; Provisional
Probab=97.26 E-value=7.5e-05 Score=49.55 Aligned_cols=22 Identities=41% Similarity=0.883 Sum_probs=16.9
Q ss_pred HHCCCCCCCHHHCCCCEEECCC
Q ss_conf 5558688723337831030367
Q gi|254780861|r 101 IKCIYCGLCQEACPVDAIVEGP 122 (163)
Q Consensus 101 ~~Ci~Cg~Cv~vCP~~AI~~~~ 122 (163)
.+||+||.||++||+++|.|.+
T Consensus 9 D~CIgC~qCV~~CPt~VleMvp 30 (81)
T PRK02651 9 DTCIGCTQCVRACPLDVLEMVP 30 (81)
T ss_pred CCCCCHHHHHHHCCCCCEEECC
T ss_conf 3136745668658876036424
No 127
>PRK13409 putative ATPase RIL; Provisional
Probab=97.23 E-value=7.4e-05 Score=49.58 Aligned_cols=27 Identities=44% Similarity=0.912 Sum_probs=23.0
Q ss_pred CCCCCEECCCCHHHHHHCCCCCCCCCC
Q ss_conf 874221345223253308832101224
Q gi|254780861|r 59 GEERCIACKLCEAICPAQAITIESGPR 85 (163)
Q Consensus 59 ~~ekCi~C~~C~~~CP~~aI~i~~~~~ 85 (163)
.|+.|||||.|++.||.+||.+..-+.
T Consensus 47 ~e~lc~gcgicvkkcpf~ai~iinlp~ 73 (590)
T PRK13409 47 SEELCIGCGICVKKCPFDAISIVNLPE 73 (590)
T ss_pred EHHHCCCCCCCCCCCCCCEEEEECCHH
T ss_conf 053356654211448830057614836
No 128
>PRK08764 ferredoxin; Provisional
Probab=97.23 E-value=9.3e-05 Score=48.96 Aligned_cols=28 Identities=50% Similarity=0.844 Sum_probs=23.6
Q ss_pred EEEHHHCCCCCCCHHHCCCCEEECCCCC
Q ss_conf 8505555868872333783103036773
Q gi|254780861|r 97 DIDMIKCIYCGLCQEACPVDAIVEGPNF 124 (163)
Q Consensus 97 ~id~~~Ci~Cg~Cv~vCP~~AI~~~~~~ 124 (163)
.|+-..|++||.|+.+||+|||++..+.
T Consensus 82 ~i~~~~CiGcg~Ci~aCpfDAI~~~~~~ 109 (138)
T PRK08764 82 WIVEADCIGCTKCIQACPVDAIVGGAKH 109 (138)
T ss_pred EEECCCCCCCCHHHHHCCCCCEECCCCC
T ss_conf 8626888773978741995517558888
No 129
>COG1600 Uncharacterized Fe-S protein [Energy production and conversion]
Probab=97.23 E-value=6e-05 Score=50.15 Aligned_cols=53 Identities=28% Similarity=0.632 Sum_probs=35.8
Q ss_pred CCCCEECCCCHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEHHHC-------------CCCCCCHHHCCCC
Q ss_conf 74221345223253308832101224544733577888505555-------------8688723337831
Q gi|254780861|r 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKC-------------IYCGLCQEACPVD 116 (163)
Q Consensus 60 ~ekCi~C~~C~~~CP~~aI~i~~~~~~~~~~~~~~~~~id~~~C-------------i~Cg~Cv~vCP~~ 116 (163)
++.|-.|..|..+||++||.-.. ..++++.....++.. .+ ..||.|..+||-+
T Consensus 184 ~~~Cg~C~~CidaCPt~Al~~~~---~~~~~~cis~lt~~~-~~~p~e~r~~~~n~iygCd~C~~vCPwn 249 (337)
T COG1600 184 EDHCGSCTRCLDACPTGALVAPY---TVDARRCISYLTIEK-GGAPEEFRPLIGNRIYGCDICQKVCPWN 249 (337)
T ss_pred CCCCHHHHHHHHHCCCCCCCCCC---CCCHHHHHHHHHHHC-CCCCHHHHHHCCCCEECCCHHHHHCCCC
T ss_conf 77572168998639853427887---546557756643304-6880777875169654686688728821
No 130
>PRK05888 NADH dehydrogenase subunit I; Provisional
Probab=97.21 E-value=0.00014 Score=47.84 Aligned_cols=23 Identities=43% Similarity=0.934 Sum_probs=11.7
Q ss_pred CCCCCEECCCCHHHHHHCCCCCC
Q ss_conf 87422134522325330883210
Q gi|254780861|r 59 GEERCIACKLCEAICPAQAITIE 81 (163)
Q Consensus 59 ~~ekCi~C~~C~~~CP~~aI~i~ 81 (163)
|..+||.||+|+.+||++||.|.
T Consensus 95 d~~rCifCGlCve~CP~~AI~~t 117 (172)
T PRK05888 95 NFGRCIFCGFCEEACPTDAIVET 117 (172)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 34605788882210888724478
No 131
>PRK06991 ferredoxin; Provisional
Probab=97.19 E-value=0.00012 Score=48.23 Aligned_cols=25 Identities=64% Similarity=1.165 Sum_probs=13.0
Q ss_pred EEHHHCCCCCCCHHHCCCCEEECCC
Q ss_conf 5055558688723337831030367
Q gi|254780861|r 98 IDMIKCIYCGLCQEACPVDAIVEGP 122 (163)
Q Consensus 98 id~~~Ci~Cg~Cv~vCP~~AI~~~~ 122 (163)
||-..||+|..|+.+||+|||....
T Consensus 82 IdE~~CIGCT~CI~aCPVDAIvGA~ 106 (274)
T PRK06991 82 IDEQLCIGCTLCMQACPVDAIVGAP 106 (274)
T ss_pred ECCCCCCCCHHHHHCCCCHHEECCC
T ss_conf 6588781720343119800155267
No 132
>PRK07570 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Validated
Probab=97.18 E-value=7.6e-05 Score=49.51 Aligned_cols=61 Identities=26% Similarity=0.573 Sum_probs=33.6
Q ss_pred CCCCEECCCCHHHHHHCCCCC-CCC--------CC--CCCCCEEE---EEEE-EEHHHCCCCCCCHHHCCCCEEECC
Q ss_conf 742213452232533088321-012--------24--54473357---7888-505555868872333783103036
Q gi|254780861|r 60 EERCIACKLCEAICPAQAITI-ESG--------PR--CHDGTRRT---VRYD-IDMIKCIYCGLCQEACPVDAIVEG 121 (163)
Q Consensus 60 ~ekCi~C~~C~~~CP~~aI~i-~~~--------~~--~~~~~~~~---~~~~-id~~~Ci~Cg~Cv~vCP~~AI~~~ 121 (163)
...||.||.|..+||+..-.. ... .. ....++.. ...+ --+.+|..|+.|+++||.+ |.++
T Consensus 156 ~~~CI~Cg~C~saCPn~~~~~f~ga~~~~~~~~~~~~~~r~~r~~~~~~~~~~~G~~~C~~~~~C~~vCPK~-Ip~~ 231 (247)
T PRK07570 156 AAACIGCGACVAACPNGSAMLFTGAKVSHLALLPQGQPERARRVRAMVDAMDEEGFGNCSNTGECEAVCPKG-ISLD 231 (247)
T ss_pred HHHHHCCCHHHHCCCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC-CCHH
T ss_conf 233011334441089862223325766430237565055778999999987458865898868701408799-9999
No 133
>pfam00037 Fer4 4Fe-4S binding domain. Superfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich.
Probab=97.17 E-value=0.00013 Score=48.11 Aligned_cols=24 Identities=58% Similarity=1.046 Sum_probs=17.2
Q ss_pred EEEHHHCCCCCCCHHHCCCCEEEC
Q ss_conf 850555586887233378310303
Q gi|254780861|r 97 DIDMIKCIYCGLCQEACPVDAIVE 120 (163)
Q Consensus 97 ~id~~~Ci~Cg~Cv~vCP~~AI~~ 120 (163)
.+|..+|+.||.|+++||++||..
T Consensus 2 ~~~~~~Ci~Cg~C~~~CP~~ai~~ 25 (26)
T pfam00037 2 VIDEEKCIGCGACVEVCPVGAITX 25 (26)
T ss_pred EECHHHHCCCHHHHHHCCCCCCCC
T ss_conf 637576234213453088542206
No 134
>PRK09326 F420H2 dehydrogenase subunit F; Provisional
Probab=97.17 E-value=0.00015 Score=47.72 Aligned_cols=17 Identities=35% Similarity=0.964 Sum_probs=12.9
Q ss_pred CCCCCEECCCCHHHHHH
Q ss_conf 87422134522325330
Q gi|254780861|r 59 GEERCIACKLCEAICPA 75 (163)
Q Consensus 59 ~~ekCi~C~~C~~~CP~ 75 (163)
+.+.|++|++|.++||.
T Consensus 51 ~~~~C~~Cg~C~~vCP~ 67 (346)
T PRK09326 51 AYQVCEGCLTCSRICPV 67 (346)
T ss_pred CCCCCCCCCHHHHHCCC
T ss_conf 73327886726663889
No 135
>PRK12386 fumarate reductase iron-sulfur subunit; Provisional
Probab=97.16 E-value=3.6e-05 Score=51.47 Aligned_cols=60 Identities=27% Similarity=0.484 Sum_probs=34.5
Q ss_pred CCCCEECCCCHHHHHHCCCCC------------------CCCCCCCCCCEEEEEE--EEEHHHCCCCCCCHHHCCCCEEE
Q ss_conf 742213452232533088321------------------0122454473357788--85055558688723337831030
Q gi|254780861|r 60 EERCIACKLCEAICPAQAITI------------------ESGPRCHDGTRRTVRY--DIDMIKCIYCGLCQEACPVDAIV 119 (163)
Q Consensus 60 ~ekCi~C~~C~~~CP~~aI~i------------------~~~~~~~~~~~~~~~~--~id~~~Ci~Cg~Cv~vCP~~AI~ 119 (163)
...||+||.|+.+||+-.-.- ...++. .+.+....- +-.+++|..||.|+++||.+ |.
T Consensus 141 ~~~CI~CgaC~saCp~~~~~~~~~~~f~GP~al~ka~r~~~d~rD-~~~~r~~~~~~~~G~~~C~~~~~C~~vCPK~-I~ 218 (250)
T PRK12386 141 FRKCIECFLCQNVCHVVRDHEENKPAFAGPRFLMRIAELEMHPLD-TRDRRAEDAQEEHGLGYCNITKCCTEVCPEN-IK 218 (250)
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCC-HHHHHHHHHHCCCCEECCCCCCCCCCCCCCC-CC
T ss_conf 877555455453578666553346477388999999974439975-5999999822788861498858420308999-98
Q ss_pred CC
Q ss_conf 36
Q gi|254780861|r 120 EG 121 (163)
Q Consensus 120 ~~ 121 (163)
.+
T Consensus 219 ~~ 220 (250)
T PRK12386 219 IT 220 (250)
T ss_pred HH
T ss_conf 68
No 136
>PRK13552 frdB fumarate reductase iron-sulfur subunit; Provisional
Probab=97.16 E-value=2e-05 Score=53.02 Aligned_cols=60 Identities=27% Similarity=0.557 Sum_probs=33.7
Q ss_pred CCCCEECCCCHHHHHHCCCC---C-----------CCCCCCCC-CCEEEEEE--EEEHHHCCCCCCCHHHCCCCEEEC
Q ss_conf 74221345223253308832---1-----------01224544-73357788--850555586887233378310303
Q gi|254780861|r 60 EERCIACKLCEAICPAQAIT---I-----------ESGPRCHD-GTRRTVRY--DIDMIKCIYCGLCQEACPVDAIVE 120 (163)
Q Consensus 60 ~ekCi~C~~C~~~CP~~aI~---i-----------~~~~~~~~-~~~~~~~~--~id~~~Ci~Cg~Cv~vCP~~AI~~ 120 (163)
...||.||.|..+||+-.-. + ....+... ..+..... +--..+|..||.|+++||.+ |..
T Consensus 148 ~~~CI~Cg~C~saCp~~~~~~~f~GPaal~~a~r~~~D~RD~~~~erl~~~~~~~~G~~~C~~~~~C~~vCPK~-I~p 224 (240)
T PRK13552 148 LDRCIECGCCVAACATKQMRPDFVGAVGMNRIARFELDPRDERSDEDFYELIGNDDGVFGCMTLLGCEDNCPKD-LPL 224 (240)
T ss_pred HHHHHHHHCCCCCCCCHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCC-CCH
T ss_conf 99988753003238521115366688999998886618843357999999852788853899978723719889-998
No 137
>TIGR02512 Fe_only_hydrog hydrogenases, Fe-only; InterPro: IPR013352 This model describes iron-only hydrogenases of anaerobic and microaerophilic bacteria and protozoa. These proteins represent a subdivision within a larger family which includes proteins such as nuclear prelamin A recognition factor in animals. These proteins show some heterogeneity in terms of periplasmic, cytosolic or hydrogenosomic location, NAD or NADP dependence, and overall protein length.; GO: 0005506 iron ion binding, 0008901 ferredoxin hydrogenase activity, 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding, 0006118 electron transport.
Probab=97.16 E-value=0.00015 Score=47.62 Aligned_cols=65 Identities=31% Similarity=0.592 Sum_probs=43.8
Q ss_pred CCCCCEECCCCHHHHHHCCCCCCCCCCCCCCC-E--EEEEEEEEHHHCCCCCCCHHHCCCCEEECCCC
Q ss_conf 87422134522325330883210122454473-3--57788850555586887233378310303677
Q gi|254780861|r 59 GEERCIACKLCEAICPAQAITIESGPRCHDGT-R--RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 (163)
Q Consensus 59 ~~ekCi~C~~C~~~CP~~aI~i~~~~~~~~~~-~--~~~~~~id~~~Ci~Cg~Cv~vCP~~AI~~~~~ 123 (163)
+..+|++|+.|..+|+...+..........+. . ......++...|+.||+|..+||++||.....
T Consensus 5 ~~~kc~~c~~c~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~cgqc~~~c~~~~~~~~~~ 72 (380)
T TIGR02512 5 DMSKCILCGRCVRACTNVQIVGALGFLNRGGKTEVAPAFGRLLDESECISCGQCSLVCPVGAITEKDD 72 (380)
T ss_pred CCCCCCCCCHHHHHCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
T ss_conf 43100011101211000010000000123332101211011011111123442101244210000001
No 138
>PRK09626 oorD 2-oxoglutarate-acceptor oxidoreductase subunit OorD; Reviewed
Probab=97.16 E-value=1e-04 Score=48.78 Aligned_cols=26 Identities=23% Similarity=0.691 Sum_probs=18.0
Q ss_pred EEHHHCCCCCCCHHHCCCCEEECCCC
Q ss_conf 50555586887233378310303677
Q gi|254780861|r 98 IDMIKCIYCGLCQEACPVDAIVEGPN 123 (163)
Q Consensus 98 id~~~Ci~Cg~Cv~vCP~~AI~~~~~ 123 (163)
||..+|+.||.|+.+||++||.|..+
T Consensus 13 Vde~~C~gC~~Cv~~CP~~~l~m~~d 38 (103)
T PRK09626 13 VDESRCKACDICVSYCPAGVLAMRIE 38 (103)
T ss_pred ECCCCCCCCCHHHHHCCHHHHHHCCC
T ss_conf 64010777128888777656432456
No 139
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=97.15 E-value=0.00012 Score=48.37 Aligned_cols=33 Identities=39% Similarity=0.841 Sum_probs=25.8
Q ss_pred CCCEEEEEECCCCCCCEECCCCHHHHHHCCCCCCCCCC
Q ss_conf 57237874058874221345223253308832101224
Q gi|254780861|r 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPR 85 (163)
Q Consensus 48 RG~~~l~~~~~~~ekCi~C~~C~~~CP~~aI~i~~~~~ 85 (163)
.|.|++ -|+.|||||.|++.||.+||.+..-+.
T Consensus 42 ~gkpvI-----sE~lCiGCGICvkkCPF~AI~IvnLP~ 74 (591)
T COG1245 42 TGKPVI-----SEELCIGCGICVKKCPFDAISIVNLPE 74 (591)
T ss_pred CCCCEE-----EHHHHCCCHHHHCCCCCCEEEEECCCH
T ss_conf 798436-----764423203431348866178843834
No 140
>PRK13984 putative oxidoreductase; Provisional
Probab=97.04 E-value=0.00025 Score=46.32 Aligned_cols=25 Identities=28% Similarity=0.716 Sum_probs=21.2
Q ss_pred CCCCCEECCCCHHHHHHCCCCCCCC
Q ss_conf 8742213452232533088321012
Q gi|254780861|r 59 GEERCIACKLCEAICPAQAITIESG 83 (163)
Q Consensus 59 ~~ekCi~C~~C~~~CP~~aI~i~~~ 83 (163)
+.-||-+|.+|+.+||+++++|..+
T Consensus 84 ~~~r~~~~~~cv~~c~t~~l~~~~e 108 (604)
T PRK13984 84 DYGRCSFCALCVDICTTGSLKMTRE 108 (604)
T ss_pred CCCCCCCHHHHHHHCCHHHHHHHHH
T ss_conf 3476663389986577127788887
No 141
>TIGR03294 FrhG coenzyme F420 hydrogenase, subunit gamma. This model represents that clade of F420-dependent hydrogenases (FRH) beta subunits found exclusively and universally in methanogenic archaea. This protein contains two 4Fe-4S cluster binding domains (pfam00037) and scores above the trusted cutoff to model pfam01058 for the "NADH ubiquinone oxidoreductase, 20 Kd subunit" family.
Probab=97.02 E-value=0.00017 Score=47.43 Aligned_cols=26 Identities=35% Similarity=0.749 Sum_probs=23.3
Q ss_pred EEHHHCCCCCCCHHHCCCCEEECCCC
Q ss_conf 50555586887233378310303677
Q gi|254780861|r 98 IDMIKCIYCGLCQEACPVDAIVEGPN 123 (163)
Q Consensus 98 id~~~Ci~Cg~Cv~vCP~~AI~~~~~ 123 (163)
||.+.|++||.|+.+||++||.|.+.
T Consensus 171 in~~LC~GCg~Ca~~Cp~~AI~~~~g 196 (228)
T TIGR03294 171 VNQGLCMGCGTCAAACPTRAIEMEDG 196 (228)
T ss_pred CCCCCCCCCHHHHHHCCCCCCEEECC
T ss_conf 46321678157785488576256538
No 142
>TIGR01971 NuoI NADH-quinone oxidoreductase, chain I; InterPro: IPR010226 This entry represents the I subunit (one of 14 subunits, A to N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This family does not contain 'I' subunits from the closely related F420H2 dehydrogenase and formate hydrogenlyase complexes.; GO: 0016651 oxidoreductase activity acting on NADH or NADPH, 0006118 electron transport.
Probab=97.00 E-value=0.00015 Score=47.73 Aligned_cols=24 Identities=46% Similarity=1.005 Sum_probs=16.6
Q ss_pred CCCCCEECCCCHHHHHHCCCCCCC
Q ss_conf 874221345223253308832101
Q gi|254780861|r 59 GEERCIACKLCEAICPAQAITIES 82 (163)
Q Consensus 59 ~~ekCi~C~~C~~~CP~~aI~i~~ 82 (163)
|.-+||-||+|+.|||++||.+..
T Consensus 87 n~grCifCGlC~E~CP~~AI~lt~ 110 (129)
T TIGR01971 87 NFGRCIFCGLCEEACPTDAIVLTP 110 (129)
T ss_pred CCEEEEEEECCCCCCCCHHHHCCC
T ss_conf 321222330751127101543373
No 143
>COG2221 DsrA Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]
Probab=96.96 E-value=0.00021 Score=46.80 Aligned_cols=27 Identities=33% Similarity=0.625 Sum_probs=23.6
Q ss_pred EEEEHHHCCCCCCCHHHCCCCEEECCC
Q ss_conf 885055558688723337831030367
Q gi|254780861|r 96 YDIDMIKCIYCGLCQEACPVDAIVEGP 122 (163)
Q Consensus 96 ~~id~~~Ci~Cg~Cv~vCP~~AI~~~~ 122 (163)
..+|...|..||.|+++||++||....
T Consensus 167 P~~~~E~c~gc~~cv~~C~~gAI~~~~ 193 (317)
T COG2221 167 PKVDEELCRGCGKCVKVCPTGAITWDG 193 (317)
T ss_pred CCCCHHHHCHHHHHHHHCCCCCEEECC
T ss_conf 724878845157689749878634224
No 144
>KOG3256 consensus
Probab=96.92 E-value=0.00037 Score=45.26 Aligned_cols=38 Identities=32% Similarity=0.686 Sum_probs=29.7
Q ss_pred CHHCCCEEEEEECCCCCCCEECCCCHHHHHHCCCCCCC
Q ss_conf 00057237874058874221345223253308832101
Q gi|254780861|r 45 PRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82 (163)
Q Consensus 45 ~rfRG~~~l~~~~~~~ekCi~C~~C~~~CP~~aI~i~~ 82 (163)
+|--|.-.+.+++-|..+||-||.|+.+||++||.+.+
T Consensus 134 ~r~dgsrRttrYdIDmtkCIyCG~CqEaCPvdaivegp 171 (212)
T KOG3256 134 ERTDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGP 171 (212)
T ss_pred ECCCCCCCCEEECCCCEEEEEECCHHHHCCCCCEECCC
T ss_conf 13775421021044521465604536438723121168
No 145
>CHL00014 ndhI NADH dehydrogenase subunit I
Probab=96.91 E-value=0.00025 Score=46.30 Aligned_cols=25 Identities=36% Similarity=0.809 Sum_probs=16.4
Q ss_pred EEHHHCCCCCCCHHHCCCCEEECCC
Q ss_conf 5055558688723337831030367
Q gi|254780861|r 98 IDMIKCIYCGLCQEACPVDAIVEGP 122 (163)
Q Consensus 98 id~~~Ci~Cg~Cv~vCP~~AI~~~~ 122 (163)
++..+||.|++|+.+||.++|++..
T Consensus 59 ~~~dkCI~C~~C~~vCP~~~i~Vd~ 83 (173)
T CHL00014 59 FEFDKCIACEVCVRVCPIDLPVVDW 83 (173)
T ss_pred CCCCCCCCHHHHHHHCCCCCEEECC
T ss_conf 5841172443698659777616335
No 146
>COG3383 Uncharacterized anaerobic dehydrogenase [General function prediction only]
Probab=96.90 E-value=0.0004 Score=45.11 Aligned_cols=30 Identities=23% Similarity=0.711 Sum_probs=23.0
Q ss_pred CEEEEEECC---CCCCCEECCCCHHHHHHCCCC
Q ss_conf 237874058---874221345223253308832
Q gi|254780861|r 50 EHALRRYPN---GEERCIACKLCEAICPAQAIT 79 (163)
Q Consensus 50 ~~~l~~~~~---~~ekCi~C~~C~~~CP~~aI~ 79 (163)
.+.+.++.. .+.-|+.||.|+.|||.+|+.
T Consensus 178 ~pRV~wd~~~~i~~SSCVsCG~CvtVCP~nALm 210 (978)
T COG3383 178 DPRVIWDNDVPINESSCVSCGACVTVCPVNALM 210 (978)
T ss_pred CCCEECCCCCCCCCCCCCCCCCCCEECCHHHHH
T ss_conf 760334789755301255457602015605643
No 147
>COG0247 GlpC Fe-S oxidoreductase [Energy production and conversion]
Probab=96.90 E-value=8.4e-05 Score=49.24 Aligned_cols=56 Identities=27% Similarity=0.691 Sum_probs=36.0
Q ss_pred CCCCCEECCCCHHHHHHCCCCCCCCCCCCCCCEE------------EEEEEEEHHHCCCCCCCHHHCCCCE
Q ss_conf 8742213452232533088321012245447335------------7788850555586887233378310
Q gi|254780861|r 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRR------------TVRYDIDMIKCIYCGLCQEACPVDA 117 (163)
Q Consensus 59 ~~ekCi~C~~C~~~CP~~aI~i~~~~~~~~~~~~------------~~~~~id~~~Ci~Cg~Cv~vCP~~A 117 (163)
.-++|+.|+.|..+||+-... + ...+.|... .....-.+..|+.|+.|+..||.+.
T Consensus 7 ~~~~Cv~Cg~C~~~CP~~~~~-~--~~sPrgr~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~C~~~CP~~i 74 (388)
T COG0247 7 SLDKCVHCGFCTNVCPSYRAT-E--ALSPRGRIVLVREVLRGKAPGDEEVYEALDTCLACGACATACPSGI 74 (388)
T ss_pred HHHHCCCCCCCCCCCCCHHCC-C--CCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHCCCCC
T ss_conf 304346378452689841206-7--7884315888999985026511444888775005368998488789
No 148
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein CcoG; InterPro: IPR014116 Member of this ferredoxin-like protein family, include FixG, CcoG and RdxA,. They are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else; it is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum..
Probab=96.79 E-value=0.00034 Score=45.53 Aligned_cols=18 Identities=33% Similarity=1.051 Sum_probs=16.6
Q ss_pred EHHHCCCCCCCHHHCCCC
Q ss_conf 055558688723337831
Q gi|254780861|r 99 DMIKCIYCGLCQEACPVD 116 (163)
Q Consensus 99 d~~~Ci~Cg~Cv~vCP~~ 116 (163)
..|.||-|.+||.||||+
T Consensus 241 ~~GDCvdC~~CV~VCPTG 258 (474)
T TIGR02745 241 PLGDCVDCNLCVQVCPTG 258 (474)
T ss_pred CCCCCCCCCCCCCCCCCC
T ss_conf 478624776554242572
No 149
>TIGR02179 PorD_KorD 2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate family; InterPro: IPR011898 A number of anaerobic and microaerophilic species lack pyruvate dehydrogenase and have instead a four subunit, oxygen-sensitive pyruvate oxidoreductase, with either ferredoxins or flavodoxins used as the acceptor. Several related four-subunit enzymes may exist in the same species. This entry describes the delta subunits, representing mostly pyruvate, 2-ketoisovalerate, and 2-oxoglutarate specific enzymes. The delta subunit is the smallest and resembles ferredoxins.; GO: 0016625 oxidoreductase activity acting on the aldehyde or oxo group of donors iron-sulfur protein as acceptor, 0051539 4 iron 4 sulfur cluster binding, 0006118 electron transport.
Probab=96.78 E-value=0.00034 Score=45.48 Aligned_cols=35 Identities=40% Similarity=0.681 Sum_probs=20.7
Q ss_pred CCCCEEEEEEEEEHHHCCCCCCCHHHCCCC-EEECC
Q ss_conf 447335778885055558688723337831-03036
Q gi|254780861|r 87 HDGTRRTVRYDIDMIKCIYCGLCQEACPVD-AIVEG 121 (163)
Q Consensus 87 ~~~~~~~~~~~id~~~Ci~Cg~Cv~vCP~~-AI~~~ 121 (163)
..|.|+..+.-+|..+||-|.+|.-+||-. +|...
T Consensus 11 ~TG~WR~~kPV~~~~KC~~C~~C~~YCPe~~~I~~~ 46 (84)
T TIGR02179 11 KTGDWRVFKPVVDKEKCIKCKLCWLYCPEGAAIQED 46 (84)
T ss_pred CCCCCEEECCEECCCCCCCCCCEEEECCCCCEEECC
T ss_conf 246650223056034535664038876997477615
No 150
>TIGR03290 CoB_CoM_SS_C CoB--CoM heterodisulfide reductase, subunit C. The last step in methanogenesis leaves two coenzymes of methanogenesis, CoM and CoB, linked by a disulfide bond. Members of this protein family are the C subunit of the enzyme that reduces the heterodisulfide to CoB-SH and CoM-SH. Similar enzyme complex subunits are found in various other species, but likely act on a different substrate.
Probab=96.78 E-value=0.00029 Score=45.97 Aligned_cols=53 Identities=34% Similarity=0.663 Sum_probs=32.6
Q ss_pred CCCEECCCCHHHHHHCCCCCCCCCC-----CCCCC--EEEEEEEEEHHHCCCCCCCHHHCCCC
Q ss_conf 4221345223253308832101224-----54473--35778885055558688723337831
Q gi|254780861|r 61 ERCIACKLCEAICPAQAITIESGPR-----CHDGT--RRTVRYDIDMIKCIYCGLCQEACPVD 116 (163)
Q Consensus 61 ekCi~C~~C~~~CP~~aI~i~~~~~-----~~~~~--~~~~~~~id~~~Ci~Cg~Cv~vCP~~ 116 (163)
.+|+.||.|..+||+.-..- ..++ ...|. .... +-++-.|..|+.|.++||.+
T Consensus 2 ~~C~qCG~Cta~CP~~~~~~-~~pR~iir~~~~G~~e~vl~--s~~lW~C~tC~~C~~~CP~g 61 (144)
T TIGR03290 2 KACYQCGTCTGSCPSGRRTS-YRTRLIIRKALLGLKDEVIS--DDDLWMCTTCYTCQERCPRD 61 (144)
T ss_pred CCCCCCCCCCCCCCCCCCCC-CCHHHHHHHHHCCCHHHHCC--CCCCCCCCCCCCHHHHCCCC
T ss_conf 70557999878499998889-89899999998688023306--88630384737540134899
No 151
>PRK06273 ferredoxin; Provisional
Probab=96.73 E-value=0.00047 Score=44.68 Aligned_cols=25 Identities=44% Similarity=0.687 Sum_probs=21.4
Q ss_pred EHHHCCCCCCCHHHCCCCEEECCCC
Q ss_conf 0555586887233378310303677
Q gi|254780861|r 99 DMIKCIYCGLCQEACPVDAIVEGPN 123 (163)
Q Consensus 99 d~~~Ci~Cg~Cv~vCP~~AI~~~~~ 123 (163)
+-..||+||-|+.+|||+||.|.+.
T Consensus 49 ~e~~CIGC~GCaNvCPT~AIeM~~~ 73 (163)
T PRK06273 49 FEELCIGCGGCANACPTKAIEMIPV 73 (163)
T ss_pred HHHHCCCCCCCCCCCCCCCEEEEEC
T ss_conf 5886436555002388775577765
No 152
>TIGR01973 NuoG NADH-quinone oxidoreductase, chain G; InterPro: IPR010228 This entry represents the G subunit (one of 14 subunits, A to N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria while translocating protons, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This family does not contain related subunits from formate dehydrogenase complexes.; GO: 0016651 oxidoreductase activity acting on NADH or NADPH, 0051536 iron-sulfur cluster binding.
Probab=96.71 E-value=0.0011 Score=42.49 Aligned_cols=85 Identities=16% Similarity=0.343 Sum_probs=56.6
Q ss_pred CCCCCCCCCC-CCCCCCHHCCCEEEEEECCCCCCCEECCCCHHHHH----HCCCCCCCCCCCCCCCEEEEEEEEEHHHCC
Q ss_conf 9852257875-77568000572378740588742213452232533----088321012245447335778885055558
Q gi|254780861|r 30 AKTTINYPFE-KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP----AQAITIESGPRCHDGTRRTVRYDIDMIKCI 104 (163)
Q Consensus 30 ~~~T~~YP~e-~~~~~~rfRG~~~l~~~~~~~ekCi~C~~C~~~CP----~~aI~i~~~~~~~~~~~~~~~~~id~~~Ci 104 (163)
+.-...|-|. |+.+...+-|-.... ...+|||.|..|++-=- ..-|-+ ..++ ..-+..+|.=....=-
T Consensus 128 G~~~sRf~e~GKR~~~~~~~GPliv~---t~M~RCI~CtRCVRF~~evAG~~~LG~--~gRG--~~~~igty~~~~l~SE 200 (715)
T TIGR01973 128 GSDRSRFREKGKRTVEDKYLGPLIVK---TEMTRCIHCTRCVRFANEVAGVEELGV--IGRG--NHVEIGTYEGKTLESE 200 (715)
T ss_pred CCCCCCEECCCCCCCCCCCCCCCEEE---ECCCCCCCCCEEEEEEEECCCCCEECC--EECC--CCCEEEEEECCEECCC
T ss_conf 47875132144334468888872030---012345343001223110189701212--5178--7316864307700224
Q ss_pred CCCCCHHHCCCCEEECC
Q ss_conf 68872333783103036
Q gi|254780861|r 105 YCGLCQEACPVDAIVEG 121 (163)
Q Consensus 105 ~Cg~Cv~vCP~~AI~~~ 121 (163)
|=|+=+|+|||+||+--
T Consensus 201 lSGN~id~CPVGALTsK 217 (715)
T TIGR01973 201 LSGNLIDICPVGALTSK 217 (715)
T ss_pred CCCCEEEECCCCCCCCC
T ss_conf 45352677675531785
No 153
>CHL00065 psaC photosystem I subunit VII
Probab=96.68 E-value=0.00032 Score=45.72 Aligned_cols=23 Identities=35% Similarity=1.032 Sum_probs=16.5
Q ss_pred CCCCEECCCCHHHHHHCCCCCCC
Q ss_conf 74221345223253308832101
Q gi|254780861|r 60 EERCIACKLCEAICPAQAITIES 82 (163)
Q Consensus 60 ~ekCi~C~~C~~~CP~~aI~i~~ 82 (163)
.|.||||++|+.+||++++++.-
T Consensus 45 ~EdCiGC~~Ce~aCPtdalS~r~ 67 (81)
T CHL00065 45 TEDCVGCKRCESACPTDFLSVRV 67 (81)
T ss_pred CCCCCCCCCCCCCCCCCCEEEEE
T ss_conf 13276665353558998616899
No 154
>PRK12576 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=96.68 E-value=0.00012 Score=48.29 Aligned_cols=57 Identities=32% Similarity=0.627 Sum_probs=33.5
Q ss_pred CCCCEECCCCHHHHHHCCCCC--------------CCCCCCCCCCEEEEEEEEEHHHCCCCCCCHHHCCCC
Q ss_conf 742213452232533088321--------------012245447335778885055558688723337831
Q gi|254780861|r 60 EERCIACKLCEAICPAQAITI--------------ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 (163)
Q Consensus 60 ~ekCi~C~~C~~~CP~~aI~i--------------~~~~~~~~~~~~~~~~~id~~~Ci~Cg~Cv~vCP~~ 116 (163)
...||.|+.|..+||+-...- ....+......+....+--.-+|..|+.|.++||.+
T Consensus 147 ~~~CIlCg~C~s~Cp~~~~n~~ylGPaal~ka~R~~~DsRD~~~~eRl~~~~~Gvw~C~~c~~C~~vCPK~ 217 (311)
T PRK12576 147 FAQCIWCGLCVSACPVVAIDEEFLGPAALAKGYRFLADPRDTITEERIKILIDSAWRCTFCYSCSNVCPKD 217 (311)
T ss_pred HHHCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHCCCC
T ss_conf 54342250786018996879886588999999987468876518999999854871662164367558899
No 155
>TIGR02936 fdxN_nitrog ferredoxin III, nif-specific; InterPro: IPR014283 This entry consists of ferredoxins which are encoded in the nitrogen fixation regions of many nitrogen-fixing bacteria. The charcterised protein from Rhodobacter capsulatus (Rhodopseudomonas capsulata) is homodimeric and contains two [4Fe-4S] clusters bound per monomer. Although nif-specific, these prtoeins are not universal in nitrogen-fixers as other nitrogenase systems may substitute flavodoxins, or different types of ferredoxin. .
Probab=96.65 E-value=0.00051 Score=44.44 Aligned_cols=26 Identities=38% Similarity=0.722 Sum_probs=19.6
Q ss_pred EEEHHHCCCCCCCHHHCCCCEEECCC
Q ss_conf 85055558688723337831030367
Q gi|254780861|r 97 DIDMIKCIYCGLCQEACPVDAIVEGP 122 (163)
Q Consensus 97 ~id~~~Ci~Cg~Cv~vCP~~AI~~~~ 122 (163)
.||..+||+||.|=-|||-+.|.|..
T Consensus 17 ~ID~~kCIGCGRCfKVCgr~Vl~L~G 42 (96)
T TIGR02936 17 SIDQEKCIGCGRCFKVCGRDVLTLKG 42 (96)
T ss_pred HCCHHCCCCCCCCCCCCCCCCCEEEE
T ss_conf 11431075454631417867642221
No 156
>COG0348 NapH Polyferredoxin [Energy production and conversion]
Probab=96.65 E-value=0.0004 Score=45.10 Aligned_cols=61 Identities=30% Similarity=0.636 Sum_probs=39.7
Q ss_pred CCCCEECCCCHHHHHHCCC---CCCCCCCCCCCCEEEEEEEEEHH-HCCCCCCCHHHCCCCEEECCCCCCCCCCCH
Q ss_conf 7422134522325330883---21012245447335778885055-558688723337831030367735675768
Q gi|254780861|r 60 EERCIACKLCEAICPAQAI---TIESGPRCHDGTRRTVRYDIDMI-KCIYCGLCQEACPVDAIVEGPNFEFATETR 131 (163)
Q Consensus 60 ~ekCi~C~~C~~~CP~~aI---~i~~~~~~~~~~~~~~~~~id~~-~Ci~Cg~Cv~vCP~~AI~~~~~~e~a~~~r 131 (163)
+..|-.|..|.+.||.... .+... + .++..+ .||.|+.|+++||.+.+.++-.+....++.
T Consensus 211 ~~~~~r~~~c~~~cp~~~~~~v~v~p~-----~------~~~~~~~~CI~C~~CidaCd~~~~~~~~~~~~i~~~~ 275 (386)
T COG0348 211 KRGCPRCKRCKKVCPEPIPLWVQVCPA-----G------IDIRDGLECIGCGRCIDACDDDMLKFNLPFGLIAYST 275 (386)
T ss_pred CCCCCCCCCCCCCCCCCCCCEEEECCC-----C------CCCCCCCCCCCHHHHHHHCCHHHEECCCCCHHHHHHH
T ss_conf 006855344545787555630255413-----0------2355666562067656428765512455434888999
No 157
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=96.59 E-value=0.00057 Score=44.15 Aligned_cols=24 Identities=33% Similarity=0.825 Sum_probs=16.9
Q ss_pred CCCCCEECCCCHHHHHHCCCCCCC
Q ss_conf 874221345223253308832101
Q gi|254780861|r 59 GEERCIACKLCEAICPAQAITIES 82 (163)
Q Consensus 59 ~~ekCi~C~~C~~~CP~~aI~i~~ 82 (163)
++..|-||+.|..+||.+||..+.
T Consensus 97 ~~~lC~GCgaC~~~CP~~AI~~~~ 120 (284)
T COG1149 97 NPDLCEGCGACSIVCPEPAIEEEP 120 (284)
T ss_pred CCCCCCCCCCCEEECCCCCCCCCC
T ss_conf 802026766333247876555432
No 158
>PRK08493 NADH dehydrogenase subunit G; Validated
Probab=96.54 E-value=0.001 Score=42.58 Aligned_cols=44 Identities=20% Similarity=0.473 Sum_probs=26.6
Q ss_pred CCCCEECCCCHHHHHHCCCCCCCCCCCCCCCEEEEEEEEE--HHHCCCCCCC
Q ss_conf 7422134522325330883210122454473357788850--5555868872
Q gi|254780861|r 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID--MIKCIYCGLC 109 (163)
Q Consensus 60 ~ekCi~C~~C~~~CP~~aI~i~~~~~~~~~~~~~~~~~id--~~~Ci~Cg~C 109 (163)
+..|+.||.|+.+||++|+.-..-... ...|++. -+.|.+||..
T Consensus 203 ~~~C~~CG~Cv~vCP~GAL~~k~~~~~------~r~w~~~k~~t~C~~CgvG 248 (819)
T PRK08493 203 TLDCSFCGECIAVCPVGALSSSDFQYT------SNAWELKKIPSTCPHCSAG 248 (819)
T ss_pred CCCCCCCCCHHHHCCCCCCCCCCCCCC------CCCCCCCCCCCCCCCCCCC
T ss_conf 767701142575397532536654234------6664012004418988899
No 159
>KOG0063 consensus
Probab=96.52 E-value=0.00052 Score=44.41 Aligned_cols=54 Identities=26% Similarity=0.384 Sum_probs=36.0
Q ss_pred CCCCCEECCCCHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEHHHCCCCCCCHHHCCCCEEECCC
Q ss_conf 8742213452232533088321012245447335778885055558688723337831030367
Q gi|254780861|r 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 (163)
Q Consensus 59 ~~ekCi~C~~C~~~CP~~aI~i~~~~~~~~~~~~~~~~~id~~~Ci~Cg~Cv~vCP~~AI~~~~ 122 (163)
-|+.||||+.|++.||-.||.+..-+... +....|.+|+.|---||..+..-++
T Consensus 48 se~lCigcgicvkkcpf~ai~iinlp~nl----------~~etthry~~n~fKlhrlp~prpg~ 101 (592)
T KOG0063 48 SEELCIGCGICVKKCPFEAIQIINLPTNL----------EKETTHRYSANSFKLHRLPIPRPGQ 101 (592)
T ss_pred HHHHHCCCCCEEECCCCCEEEECCCCHHH----------HHHHHHHHCCCCEEECCCCCCCCCH
T ss_conf 17664354201310675347704783567----------6643223025511342489998200
No 160
>pfam00037 Fer4 4Fe-4S binding domain. Superfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich.
Probab=96.51 E-value=0.00058 Score=44.11 Aligned_cols=22 Identities=50% Similarity=1.135 Sum_probs=19.5
Q ss_pred CCCCCEECCCCHHHHHHCCCCC
Q ss_conf 8742213452232533088321
Q gi|254780861|r 59 GEERCIACKLCEAICPAQAITI 80 (163)
Q Consensus 59 ~~ekCi~C~~C~~~CP~~aI~i 80 (163)
+.++|++|+.|+.+||.+||..
T Consensus 4 ~~~~Ci~Cg~C~~~CP~~ai~~ 25 (26)
T pfam00037 4 DEEKCIGCGACVEVCPVGAITX 25 (26)
T ss_pred CHHHHCCCHHHHHHCCCCCCCC
T ss_conf 7576234213453088542206
No 161
>COG1146 Ferredoxin [Energy production and conversion]
Probab=96.39 E-value=0.0015 Score=41.51 Aligned_cols=32 Identities=38% Similarity=0.797 Sum_probs=24.1
Q ss_pred CCCEEEEEECCCCCCCEECCCCHHHHHHCCCCCCCC
Q ss_conf 572378740588742213452232533088321012
Q gi|254780861|r 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESG 83 (163)
Q Consensus 48 RG~~~l~~~~~~~ekCi~C~~C~~~CP~~aI~i~~~ 83 (163)
+|.+... +.+.|++|++|+.+||.+||.+...
T Consensus 32 ~~~~~~~----~~e~C~~C~~C~~~CP~~aI~~~~~ 63 (68)
T COG1146 32 GGKPVVA----RPEECIDCGLCELACPVGAIKVDIL 63 (68)
T ss_pred CCCEEEE----CHHHCCCCCCHHHHCCCCEEEEECC
T ss_conf 7716887----6466865561344488677997335
No 162
>TIGR02912 sulfite_red_C sulfite reductase, subunit C; InterPro: IPR014261 This entry represents subunit C, one of the three subunits of the anaerobic sulphite reductase of Salmonella, and close homologues from various Clostridium species, where the three-gene neighbourhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substrates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulphite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulphide gas from sulphite..
Probab=96.38 E-value=0.00076 Score=43.37 Aligned_cols=48 Identities=23% Similarity=0.396 Sum_probs=26.4
Q ss_pred HHHHCCCCCCCCCCCCCCCEEEEEEEEEHHHCCCCCCCHHHCCCC---EEECCC
Q ss_conf 533088321012245447335778885055558688723337831---030367
Q gi|254780861|r 72 ICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD---AIVEGP 122 (163)
Q Consensus 72 ~CP~~aI~i~~~~~~~~~~~~~~~~~id~~~Ci~Cg~Cv~vCP~~---AI~~~~ 122 (163)
=||++|+...=.. -|---++...++..+|+.||.||.+|-.. ||.+.+
T Consensus 149 GCPNDC~Ka~M~D---~GI~G~t~~~y~~~rC~gC~ACV~~C~~~~~GaL~~~N 199 (323)
T TIGR02912 149 GCPNDCAKARMHD---FGIIGMTEPRYDADRCIGCGACVKVCKKKAVGALSLEN 199 (323)
T ss_pred CCCCHHHHCCHHH---CCEECCCCCCCCCCCCCCCHHHHHHCCCCCCEEEEEEC
T ss_conf 4887123300201---31432545442655331324678403432210223104
No 163
>COG1035 FrhB Coenzyme F420-reducing hydrogenase, beta subunit [Energy production and conversion]
Probab=96.32 E-value=0.00098 Score=42.71 Aligned_cols=45 Identities=31% Similarity=0.544 Sum_probs=33.3
Q ss_pred CCCEECCCCHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEHHHCCCCCCCHHHCCCC
Q ss_conf 42213452232533088321012245447335778885055558688723337831
Q gi|254780861|r 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 (163)
Q Consensus 61 ekCi~C~~C~~~CP~~aI~i~~~~~~~~~~~~~~~~~id~~~Ci~Cg~Cv~vCP~~ 116 (163)
..|++|+.|+.+||. +|++..+... -+....+.+||.|.++||.-
T Consensus 5 ~~c~~Cg~C~a~cp~-~i~~~~~~~~----------~~~~c~~~~~~~~~~~cp~~ 49 (332)
T COG1035 5 GLCTGCGTCAAVCPY-AITERDEAPL----------LIEECMDNGHGTCLKVCPEV 49 (332)
T ss_pred CCCCCCHHHHHHCCC-EEEEECCCCH----------HHHHHHCCCCHHHHHHCCCC
T ss_conf 635642554741875-2897136430----------22243316636876428511
No 164
>PRK05352 Na(+)-translocating NADH-quinone reductase subunit A; Provisional
Probab=96.30 E-value=0.00034 Score=45.55 Aligned_cols=56 Identities=20% Similarity=0.290 Sum_probs=34.5
Q ss_pred CCCCC-CEECCCCHHHHHHCCCCCC--CCCCCCCCCEEEEEEEEEHHHCCC--CCCCHHHCCCC
Q ss_conf 88742-2134522325330883210--122454473357788850555586--88723337831
Q gi|254780861|r 58 NGEER-CIACKLCEAICPAQAITIE--SGPRCHDGTRRTVRYDIDMIKCIY--CGLCQEACPVD 116 (163)
Q Consensus 58 ~~~ek-Ci~C~~C~~~CP~~aI~i~--~~~~~~~~~~~~~~~~id~~~Ci~--Cg~Cv~vCP~~ 116 (163)
+|+++ ||-|+.|++|||.+-.-++ +.-...|-.+. . ......|+- ||+|..|||..
T Consensus 370 nG~~Ra~I~~g~~e~v~P~di~P~qL~ka~~~~d~e~~-e--~lGi~e~~eED~alcsyvCpSK 430 (448)
T PRK05352 370 NGSERAMVPIGNYERVMPLDILPTLLLRALIAGDTDEA-Q--ALGALELDEEDLALCTFVCPGK 430 (448)
T ss_pred CCCCCCEEECCHHHHHCCCCCCHHHHHHHHHCCCHHHH-H--HCCCCCCCHHHCCEEEEECCCH
T ss_conf 88644378867476427885689999999870699999-8--7599033853641464588861
No 165
>TIGR02486 RDH reductive dehalogenase; InterPro: IPR012832 This entry represents a family of corrin and 8-iron Fe-S cluster-containing reductive dehalogenases found primarily in halorespiring microorganisms such as Dehalococcoides ethenogenes which contains as many as 17 enzymes of this type with varying substrate ranges. One example of a characterised enzyme is the tetrachloroethene reductive dehalogenase (1.97.1.8 from EC) which also acts on trichloroethene converting it to dichloroethene..
Probab=96.28 E-value=0.00096 Score=42.76 Aligned_cols=27 Identities=37% Similarity=0.719 Sum_probs=23.9
Q ss_pred EEHHH---CCCCCCCHHHCCCCEEECCCCC
Q ss_conf 50555---5868872333783103036773
Q gi|254780861|r 98 IDMIK---CIYCGLCQEACPVDAIVEGPNF 124 (163)
Q Consensus 98 id~~~---Ci~Cg~Cv~vCP~~AI~~~~~~ 124 (163)
||.|. |--||.|+|+||.+||+..++.
T Consensus 216 IDaG~~~FC~tC~kCAd~CP~~aI~~~~~~ 245 (338)
T TIGR02486 216 IDAGVAKFCETCGKCADECPSGAISKEGEP 245 (338)
T ss_pred CCCCHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 122158876655666422862132578888
No 166
>COG1145 NapF Ferredoxin [Energy production and conversion]
Probab=96.25 E-value=0.0013 Score=41.88 Aligned_cols=27 Identities=48% Similarity=0.819 Sum_probs=23.0
Q ss_pred EEEEHHHCCCCCCCHHHCCCCEEECCC
Q ss_conf 885055558688723337831030367
Q gi|254780861|r 96 YDIDMIKCIYCGLCQEACPVDAIVEGP 122 (163)
Q Consensus 96 ~~id~~~Ci~Cg~Cv~vCP~~AI~~~~ 122 (163)
+.++..+|+.||.|+.+||++||.+..
T Consensus 24 ~~~~~~~Ci~Cg~C~~~CP~~ai~~~~ 50 (99)
T COG1145 24 LVIDAEKCIGCGLCVKVCPTGAIELIE 50 (99)
T ss_pred EEECCCCCCCCCCHHHHCCHHHHHHCC
T ss_conf 453400198686345457688875221
No 167
>PRK09477 napH quinol dehydrogenase membrane component; Provisional
Probab=96.14 E-value=0.00077 Score=43.34 Aligned_cols=44 Identities=30% Similarity=0.574 Sum_probs=29.8
Q ss_pred CCHHHHHHCCCCCCCCCCCCCCCEEEEEE-EEEHHHCCCCCCCHHHCCCCE
Q ss_conf 22325330883210122454473357788-850555586887233378310
Q gi|254780861|r 68 LCEAICPAQAITIESGPRCHDGTRRTVRY-DIDMIKCIYCGLCQEACPVDA 117 (163)
Q Consensus 68 ~C~~~CP~~aI~i~~~~~~~~~~~~~~~~-~id~~~Ci~Cg~Cv~vCP~~A 117 (163)
-|-..||.++..-.- ++....+. ..|.++|+-|+.|+.|||++.
T Consensus 196 wC~~lCP~Gaf~sl~------~~~s~~rv~~~~~~~C~~C~~C~~VCP~~~ 240 (287)
T PRK09477 196 WCGHLCPLGAFYGLI------GKKSLIRVKAHDREKCTRCMDCFHVCPEPQ 240 (287)
T ss_pred HHHCCCCHHHHHHHH------HHCCCEEECCCCCCCCCCCCHHHHHCCCCC
T ss_conf 997549689999998------405754752578875809235767579954
No 168
>COG2440 FixX Ferredoxin-like protein [Energy production and conversion]
Probab=96.11 E-value=0.0013 Score=41.95 Aligned_cols=51 Identities=27% Similarity=0.628 Sum_probs=39.5
Q ss_pred CCCCEECC--CCHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEHHHCCCCCCCHHHCCC-CEEEC
Q ss_conf 74221345--223253308832101224544733577888505555868872333783-10303
Q gi|254780861|r 60 EERCIACK--LCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV-DAIVE 120 (163)
Q Consensus 60 ~ekCi~C~--~C~~~CP~~aI~i~~~~~~~~~~~~~~~~~id~~~Ci~Cg~Cv~vCP~-~AI~~ 120 (163)
...|-.|. .|..+||+++-....+ |+- .+++..|+-||.|--+||. ..|++
T Consensus 32 ~~~~~~~~~~~l~~aCPA~~Y~~~~~-----g~l-----~~~yegClECGTCRvlc~~~~~i~W 85 (99)
T COG2440 32 PDDCQECEDKPLIKACPAGCYKLIDD-----GKL-----RFDYEGCLECGTCRVLCPHSGLIQW 85 (99)
T ss_pred CHHHHHCCCHHHHHCCCHHHEEECCC-----CCE-----EEEECCEEECCCEEEECCCCCCEEE
T ss_conf 02410133114665398878068799-----868-----9964680014632585178752587
No 169
>PRK07569 bidirectional hydrogenase complex protein HoxU; Validated
Probab=95.99 E-value=0.0028 Score=39.90 Aligned_cols=18 Identities=39% Similarity=0.947 Sum_probs=10.4
Q ss_pred CCEECCCCHHHHHHCCCC
Q ss_conf 221345223253308832
Q gi|254780861|r 62 RCIACKLCEAICPAQAIT 79 (163)
Q Consensus 62 kCi~C~~C~~~CP~~aI~ 79 (163)
.|+.||+|+.+||++||.
T Consensus 191 ~C~~CG~Cv~vCPvGAL~ 208 (236)
T PRK07569 191 ACTSCGKCVQACPTGAIF 208 (236)
T ss_pred CCCCCCCCHHCCCCHHCC
T ss_conf 521256534219202265
No 170
>PRK09625 porD pyruvate flavodoxin oxidoreductase subunit delta; Reviewed
Probab=95.96 E-value=0.0039 Score=39.01 Aligned_cols=36 Identities=22% Similarity=0.282 Sum_probs=30.0
Q ss_pred CCCCEEEEEEEEEHHHCCCCCCCHHHCCCCEEECCC
Q ss_conf 447335778885055558688723337831030367
Q gi|254780861|r 87 HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 (163)
Q Consensus 87 ~~~~~~~~~~~id~~~Ci~Cg~Cv~vCP~~AI~~~~ 122 (163)
..|.++..+.-+|..+||.|++|.-+||.+||...+
T Consensus 42 ~~gdWR~~rPV~d~ekCi~C~~Cw~yCPD~aI~~~~ 77 (130)
T PRK09625 42 SVAHWRVEKPVHNNDICINCFNCWVYCPDASILSRD 77 (130)
T ss_pred CCCCCEEECCCCCHHHCCCCCHHHCCCCCCEEEEEC
T ss_conf 436633513551753589723000308983788238
No 171
>PRK13795 hypothetical protein; Provisional
Probab=95.95 E-value=0.0032 Score=39.59 Aligned_cols=23 Identities=35% Similarity=0.751 Sum_probs=20.4
Q ss_pred HHCCCCCCCHHHCCCCEEECCCC
Q ss_conf 55586887233378310303677
Q gi|254780861|r 101 IKCIYCGLCQEACPVDAIVEGPN 123 (163)
Q Consensus 101 ~~Ci~Cg~Cv~vCP~~AI~~~~~ 123 (163)
..|+.||.|+..||++||++..+
T Consensus 575 ~~C~gCg~C~~~CP~gAi~i~~~ 597 (630)
T PRK13795 575 AICTGCGVCVGWCPTGAISIDEK 597 (630)
T ss_pred HHCCCCCHHHHHCCCCCEEEECC
T ss_conf 74789734663378884797368
No 172
>COG1141 Fer Ferredoxin [Energy production and conversion]
Probab=95.90 E-value=0.0012 Score=42.08 Aligned_cols=60 Identities=25% Similarity=0.374 Sum_probs=29.9
Q ss_pred CCCCCEECCCCHHHHHHCCCCCCCCCCC--CCCCEEEEEEEEEHHHCCCCCCCHHHCCCCEEECC
Q ss_conf 8742213452232533088321012245--44733577888505555868872333783103036
Q gi|254780861|r 59 GEERCIACKLCEAICPAQAITIESGPRC--HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 (163)
Q Consensus 59 ~~ekCi~C~~C~~~CP~~aI~i~~~~~~--~~~~~~~~~~~id~~~Ci~Cg~Cv~vCP~~AI~~~ 121 (163)
|+++||||++|..+||.-=. +..+... .++......+.-+...|+ -.=++.||++||+..
T Consensus 6 Drd~Cigcg~C~~~aPdvF~-~~d~G~a~~~~~~~~~~~~~~e~~~~~--~~A~~~CP~~aI~v~ 67 (68)
T COG1141 6 DRDTCIGCGACLAVAPDVFD-YDDEGIAFVLDGNIGEGEVPEELEEDA--EDAAEACPTDAIKVE 67 (68)
T ss_pred CHHHCCCCCHHHHCCCCCEE-ECCCCCEEECCCCCCCCCCCHHHHHHH--HHHHHHCCCCCEEEC
T ss_conf 64650054214340885363-679863575267520135886789999--999983982346822
No 173
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family; InterPro: IPR014073 This entry describes one of two paralogous families of archaeal flavoprotein. The other, described by IPR014072 from INTERPRO and typified by the partially characterised AF1518 of ArchaArchaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown..
Probab=95.84 E-value=0.0022 Score=40.55 Aligned_cols=30 Identities=40% Similarity=0.810 Sum_probs=24.2
Q ss_pred EEEEEHHHCCCCCCCHH--HCCCCEEECCCCC
Q ss_conf 88850555586887233--3783103036773
Q gi|254780861|r 95 RYDIDMIKCIYCGLCQE--ACPVDAIVEGPNF 124 (163)
Q Consensus 95 ~~~id~~~Ci~Cg~Cv~--vCP~~AI~~~~~~ 124 (163)
.|.||-.+|-.|+.|++ +||.+||.+.+.+
T Consensus 142 PY~idrk~Ck~C~~C~~re~CP~~AI~~~dg~ 173 (237)
T TIGR02700 142 PYAIDRKKCKLCEKCVDREACPREAISKKDGV 173 (237)
T ss_pred CHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCC
T ss_conf 61566874124788987345771133410781
No 174
>COG1144 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, delta subunit [Energy production and conversion]
Probab=95.67 E-value=0.0084 Score=36.98 Aligned_cols=37 Identities=41% Similarity=0.680 Sum_probs=22.0
Q ss_pred CCCCEEEEEEEEEHHHCCCCCCCHHHCCCCEEECCCC
Q ss_conf 4473357788850555586887233378310303677
Q gi|254780861|r 87 HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 (163)
Q Consensus 87 ~~~~~~~~~~~id~~~Ci~Cg~Cv~vCP~~AI~~~~~ 123 (163)
..|.++..+..+|..+|+-|.+|.-.||..||...++
T Consensus 21 kTg~Wrv~rPv~d~~kCi~C~~C~~yCPe~~i~~~~~ 57 (91)
T COG1144 21 KTGSWRVFRPVVDEDKCINCKLCWLYCPEPAILEEEG 57 (91)
T ss_pred CCCEEEEEEEEECCHHCCCCCEEEEECCCHHEEECCC
T ss_conf 6432688745774100026863589879400560158
No 175
>KOG0063 consensus
Probab=95.66 E-value=0.0036 Score=39.21 Aligned_cols=50 Identities=32% Similarity=0.757 Sum_probs=32.8
Q ss_pred CCCE--ECC-CCHHHHHHC-----CCCCCCCCCCCCCCEEEEEEEEEHHHCCCCCCCHHHCCCCEEECCC
Q ss_conf 4221--345-223253308-----8321012245447335778885055558688723337831030367
Q gi|254780861|r 61 ERCI--ACK-LCEAICPAQ-----AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 (163)
Q Consensus 61 ekCi--~C~-~C~~~CP~~-----aI~i~~~~~~~~~~~~~~~~~id~~~Ci~Cg~Cv~vCP~~AI~~~~ 122 (163)
++|- .|. -|.++||+. ||.+... -.|.-..||+||.||.-||.+||+.-+
T Consensus 14 d~ckpk~c~~eck~~cpv~~~gk~ci~V~~~------------~~ise~lCigcgicvkkcpf~ai~iin 71 (592)
T KOG0063 14 DKCKPKKCRQECKKSCPVVRTGKLCIEVTPT------------AFISEELCIGCGICVKKCPFEAIQIIN 71 (592)
T ss_pred CCCCCHHHHHHHHHCCCCCCCCCEEEEECCC------------CHHHHHHHCCCCCEEECCCCCEEEECC
T ss_conf 4558167788877438711246568998686------------201176643542013106753477047
No 176
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family; InterPro: IPR012839 This subset of the radical-SAM domain includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centred radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4 from EC, IPR012838 from INTERPRO) and the anaerobic ribonucleotide reductase activating enzyme (IPR012837 from INTERPRO). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in Escherichia coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterisation and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain, which follows a conserved group of three cysteines and contains a variable pattern of 0 to 8 additional cysteines..
Probab=95.51 E-value=0.0032 Score=39.59 Aligned_cols=26 Identities=31% Similarity=0.784 Sum_probs=21.2
Q ss_pred CCCCCEECCCCHHHHHHCCCCCCCCC
Q ss_conf 87422134522325330883210122
Q gi|254780861|r 59 GEERCIACKLCEAICPAQAITIESGP 84 (163)
Q Consensus 59 ~~ekCi~C~~C~~~CP~~aI~i~~~~ 84 (163)
..++|++|+.|+.+||++|+.|....
T Consensus 84 ~~~~c~~Cg~C~~~Cp~~Al~~~G~~ 109 (305)
T TIGR02494 84 RREKCTGCGKCTEACPSGALEIVGKE 109 (305)
T ss_pred CCCCCCCCCCHHHCCCCHHHHEECCC
T ss_conf 00177411101103840064202451
No 177
>COG2878 Predicted NADH:ubiquinone oxidoreductase, subunit RnfB [Energy production and conversion]
Probab=95.39 E-value=0.0033 Score=39.46 Aligned_cols=28 Identities=50% Similarity=0.851 Sum_probs=24.7
Q ss_pred EEEHHHCCCCCCCHHHCCCCEEECCCCC
Q ss_conf 8505555868872333783103036773
Q gi|254780861|r 97 DIDMIKCIYCGLCQEACPVDAIVEGPNF 124 (163)
Q Consensus 97 ~id~~~Ci~Cg~Cv~vCP~~AI~~~~~~ 124 (163)
.||-..|++|-.|+++||++||++.++.
T Consensus 111 ~i~e~~ciGCtkCiqaCpvdAivg~~~~ 138 (198)
T COG2878 111 LIDEANCIGCTKCIQACPVDAIVGATKA 138 (198)
T ss_pred EECCHHCCCCHHHHHHCCHHHHHCCCHH
T ss_conf 7512201443989984971443125325
No 178
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=95.38 E-value=0.009 Score=36.81 Aligned_cols=55 Identities=31% Similarity=0.724 Sum_probs=34.9
Q ss_pred CCCCCEEC----CCCHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEHHHCCCCCCCHHHCCCCE
Q ss_conf 87422134----522325330883210122454473357788850555586887233378310
Q gi|254780861|r 59 GEERCIAC----KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 (163)
Q Consensus 59 ~~ekCi~C----~~C~~~CP~~aI~i~~~~~~~~~~~~~~~~~id~~~Ci~Cg~Cv~vCP~~A 117 (163)
+-.+|.+| ..|+.|||+.|=.....+.. ..+.+.. .+| +.|=-||.|...||-+.
T Consensus 879 e~~RCL~C~~vCe~CvdVCPNRANv~i~vpg~-~~~~Qii--H~D-~mCNeCGNC~~FCp~~~ 937 (1012)
T TIGR03315 879 ESQRCLECSYVCEKCVDVCPNRANIVIYVPGF-RDQFQIV--HLD-GMCNECGNCATFCPYDG 937 (1012)
T ss_pred CCCCCCCCCCHHHHHHCCCCCCCEEEEECCCC-CCCCEEE--EEC-CCCCCCCCCCCCCCCCC
T ss_conf 45524563115654412289854158864875-6654489--730-00435467654189899
No 179
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=95.35 E-value=0.0091 Score=36.77 Aligned_cols=54 Identities=30% Similarity=0.729 Sum_probs=34.4
Q ss_pred CCCCEEC----CCCHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEHHHCCCCCCCHHHCCCCE
Q ss_conf 7422134----522325330883210122454473357788850555586887233378310
Q gi|254780861|r 60 EERCIAC----KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 (163)
Q Consensus 60 ~ekCi~C----~~C~~~CP~~aI~i~~~~~~~~~~~~~~~~~id~~~Ci~Cg~Cv~vCP~~A 117 (163)
-.+|.+| ..|+.|||+.|=.....+.. ..+.+.. .+| +.|=-||.|...||-+.
T Consensus 896 ~~RCL~C~~vCe~CvdVCPNRANv~i~vpg~-~~~~Qii--H~D-~mCNeCGNC~~FCp~~~ 953 (1032)
T PRK09853 896 AARCLECSYVCSKCVDVCPNRANVSIAVPGF-QNRFQIV--HLD-AYCNECGNCAQFCPWNG 953 (1032)
T ss_pred CCCCCCCCCHHHHHHCCCCCCCEEEEECCCC-CCCCEEE--EEH-HHCCCCCCCCCCCCCCC
T ss_conf 4534562015654412289854158864875-6544488--730-00435467654189899
No 180
>TIGR01582 FDH-beta formate dehydrogenase, beta subunit; InterPro: IPR006470 The sequences in this group represent the beta subunit of the gamma-proteobacterial formate dehydrogenase. This subunit contains four 4Fe-4S clusters and is involved in transmitting electrons from the alpha subunit (IPR006443 from INTERPRO) at the periplasmic space to the gamma subunit which spans the cytoplasmic membrane . In addition to the gamma proteobacteria, a sequence from Aquifex aolicus falls within this group. This appears to be the case for the alpha, gamma and epsilon (accessory protein IPR006452 from INTERPRO) chains as well. ; GO: 0008863 formate dehydrogenase activity, 0045333 cellular respiration, 0016021 integral to membrane.
Probab=95.32 E-value=0.012 Score=36.09 Aligned_cols=25 Identities=36% Similarity=0.740 Sum_probs=19.8
Q ss_pred EEHHHCCCCCCCHHHCCCCEEECCC
Q ss_conf 5055558688723337831030367
Q gi|254780861|r 98 IDMIKCIYCGLCQEACPVDAIVEGP 122 (163)
Q Consensus 98 id~~~Ci~Cg~Cv~vCP~~AI~~~~ 122 (163)
.+..+||+||+|+.-||++-=.|++
T Consensus 131 F~h~kCIGCgyCi~GCPFnIPR~~k 155 (293)
T TIGR01582 131 FDHEKCIGCGYCIVGCPFNIPRIDK 155 (293)
T ss_pred CCCCCEECCCCCCCCCCCCCCCCCC
T ss_conf 1158600067302587888888874
No 181
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase; InterPro: IPR011895 The oxidative decarboxylation of pyruvate to acetyl-CoA, a central step in energy metabolism, can occur by two different mechanisms . In mitochondria and aerobic bacteria this reaction is catalysed by the multienzyme complex pyruvate dehydrogenase using NAD as electron acceptor. In anaerobic organisms, however, this reaction is reversibly catalysed by a single enzyme using either ferrodoxin or flavodoxin as the electron acceptor. Pyruvate:ferrodoxin/flavodoxin reductases (PFORs) in this entry occur in both obligately and facultatively anaerobic bacteria and also some eukaryotic microorganisms. These proteins are single-chain enzymes containing a thiamin pyrophosphate cofactor for the cleavage of carbon-carbon bonds next to a carbonyl group, and iron-sulphur clusters for electron transfer. The Desulfovibrio africanus enzyme is currently the only PFOR whose three dimensional structure is known , . It is a homodimer where each subunit contains one thiamin pyrophosphate cofactor and two ferrodoxin-like 4Fe-S clusters and an atypical 4Fe-S cluster. Each monomer is composed of seven domains - domains I, II and VI make intersubunit contacts, while domains III, IV and V are located at the suface of the dimer, and domain VII forms a long arm extending over the other subunit. The cofactor is bound at the interface of domains I and VI and is proximal to the atypical 4Fe-S bound by domain VI, while the ferrodoxin-like 4Fe-S clusters are bound by domain V. Comparison of this enzyme with the multi-chain PFORs shows a correspondance between the domains in this enzyme and the subunits of the multi-chain enzymes.; GO: 0005506 iron ion binding, 0016903 oxidoreductase activity acting on the aldehyde or oxo group of donors, 0006118 electron transport.
Probab=95.04 E-value=0.0051 Score=38.30 Aligned_cols=98 Identities=18% Similarity=0.304 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHC------CCCCCCCCCCCCCCCCCHHCC-----CEEEEEECCCCCCCEECCCCHHH
Q ss_conf 8999999999999999999999840------698522578757756800057-----23787405887422134522325
Q gi|254780861|r 4 FRCNVSFLFLKEFVGAFFLCLRYFF------KAKTTINYPFEKGSTSPRFRG-----EHALRRYPNGEERCIACKLCEAI 72 (163)
Q Consensus 4 ~~~~~~~~~~~~~~~gl~~t~k~~~------~~~~T~~YP~e~~~~~~rfRG-----~~~l~~~~~~~ekCi~C~~C~~~ 72 (163)
.|..|.+.|.+ ||..|+-+|.- ..-.-+.||.+=...+...+- .+.+. |..+
T Consensus 589 lK~~I~ksYGK---KG~~vV~~N~~AvD~~v~~l~~v~vp~~w~~~~~~~~~ri~~~~~eFV--------------~nv~ 651 (1194)
T TIGR02176 589 LKKSIEKSYGK---KGEEVVQKNIKAVDKAVESLHEVKVPAEWKDAEEEPKARIAEDAPEFV--------------KNVV 651 (1194)
T ss_pred HHHHHHHHCCC---CCHHHHHHHHHHHHHHHHCCEECCCCHHHHCCHHCCCCCCCCCCCHHH--------------HHHH
T ss_conf 88998850489---777889877999977733245324763661411237755477474789--------------9988
Q ss_pred HHH-----CCCCCCCCCC--CCCCCE---------E-----EEEEEEEHHHCCCCCCCHHHCCCCEEEC
Q ss_conf 330-----8832101224--544733---------5-----7788850555586887233378310303
Q gi|254780861|r 73 CPA-----QAITIESGPR--CHDGTR---------R-----TVRYDIDMIKCIYCGLCQEACPVDAIVE 120 (163)
Q Consensus 73 CP~-----~aI~i~~~~~--~~~~~~---------~-----~~~~~id~~~Ci~Cg~Cv~vCP~~AI~~ 120 (163)
=|. +.|.|-.-+. -+||.. + +..|..| +||-||.|+.|||.-||.+
T Consensus 652 ~pi~~q~GD~lpVS~~~~~GmeDG~fPlGTt~~EKRgvA~~vP~W~~d--~CiqCnqCa~VCPHaaIR~ 718 (1194)
T TIGR02176 652 RPIAAQEGDDLPVSAFPARGMEDGTFPLGTTAFEKRGVALEVPVWKSD--NCIQCNQCAFVCPHAAIRP 718 (1194)
T ss_pred HHHHHCCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCC--CCCCCCCCCCCCCHHHHHH
T ss_conf 888625889876577743888688886202003453120318705656--6534788543376478777
No 182
>COG1941 FrhG Coenzyme F420-reducing hydrogenase, gamma subunit [Energy production and conversion]
Probab=94.98 E-value=0.0048 Score=38.47 Aligned_cols=43 Identities=37% Similarity=0.931 Sum_probs=34.9
Q ss_pred CCEECCCCHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEHHHCCCCCCCHHHCCCCE
Q ss_conf 22134522325330883210122454473357788850555586887233378310
Q gi|254780861|r 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 (163)
Q Consensus 62 kCi~C~~C~~~CP~~aI~i~~~~~~~~~~~~~~~~~id~~~Ci~Cg~Cv~vCP~~A 117 (163)
-|.||+-|+..||+.+|.+.. .. .+..+|+-||.|--.||...
T Consensus 191 ~C~G~~TC~A~CP~~ai~c~G-c~------------g~~~~~~~~Ga~~v~~~rs~ 233 (247)
T COG1941 191 PCMGCGTCAASCPSRAIPCRG-CR------------GNIPRCIKCGACFVSCPRSK 233 (247)
T ss_pred CCCCCHHHHCCCCCCCCCCCC-CC------------CCCCCCHHHHHHHHHHHHHH
T ss_conf 434724543539735776437-76------------77320014458999875776
No 183
>PRK09129 NADH dehydrogenase subunit G; Validated
Probab=94.64 E-value=0.02 Score=34.66 Aligned_cols=36 Identities=22% Similarity=0.246 Sum_probs=22.8
Q ss_pred HHCCCEEEEE-ECCCCCCCEECCCCHHHHHHCCCCCC
Q ss_conf 0057237874-05887422134522325330883210
Q gi|254780861|r 46 RFRGEHALRR-YPNGEERCIACKLCEAICPAQAITIE 81 (163)
Q Consensus 46 rfRG~~~l~~-~~~~~ekCi~C~~C~~~CP~~aI~i~ 81 (163)
..||.+...- +.++.-.|-.||.|+.+||++|+.-.
T Consensus 168 ~~rg~~~~i~~~~~~~~~~~~~G~cv~~CP~GAL~~k 204 (777)
T PRK09129 168 MGRGEHSEITTFVGKTVDSELSGNMIDLCPVGALTSK 204 (777)
T ss_pred EEECCCCEEECCCCCCCCCHHHHHHHHHCCCCCCCCC
T ss_conf 9506753021247986541222315654564413056
No 184
>COG2768 Uncharacterized Fe-S center protein [General function prediction only]
Probab=94.62 E-value=0.0083 Score=37.03 Aligned_cols=26 Identities=42% Similarity=0.779 Sum_probs=22.5
Q ss_pred EEEHHHCCCCCCCHHHCCCCEEECCC
Q ss_conf 85055558688723337831030367
Q gi|254780861|r 97 DIDMIKCIYCGLCQEACPVDAIVEGP 122 (163)
Q Consensus 97 ~id~~~Ci~Cg~Cv~vCP~~AI~~~~ 122 (163)
.+...+|..||.|++.||++||..++
T Consensus 189 ~v~e~kc~~c~~cv~~cp~~Ai~~~~ 214 (354)
T COG2768 189 VVVEEKCYDCGLCVKICPVGAITLTK 214 (354)
T ss_pred EEEEECCCCCCHHHHHCCCCCEECCC
T ss_conf 14431103531366638775111100
No 185
>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein. Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB.
Probab=94.14 E-value=0.017 Score=35.09 Aligned_cols=21 Identities=33% Similarity=0.808 Sum_probs=17.6
Q ss_pred CCCCCEECCCCHHHHHHCCCC
Q ss_conf 874221345223253308832
Q gi|254780861|r 59 GEERCIACKLCEAICPAQAIT 79 (163)
Q Consensus 59 ~~ekCi~C~~C~~~CP~~aI~ 79 (163)
+.++|-+|+.|...||+++|.
T Consensus 37 ~~~~cn~c~~ci~pcptg~id 57 (411)
T TIGR03224 37 KADVCNGCMACVSPCPTGAID 57 (411)
T ss_pred CCCCCCCCCCCCCCCCCCCCC
T ss_conf 420137551037989987664
No 186
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=94.10 E-value=0.013 Score=35.85 Aligned_cols=19 Identities=37% Similarity=0.901 Sum_probs=10.8
Q ss_pred CCEECCCCHHHHHHCCCCC
Q ss_conf 2213452232533088321
Q gi|254780861|r 62 RCIACKLCEAICPAQAITI 80 (163)
Q Consensus 62 kCi~C~~C~~~CP~~aI~i 80 (163)
.|+||+.|+.+||..+|..
T Consensus 609 ~C~GCg~C~~iCP~~a~~~ 627 (640)
T COG4231 609 SCNGCGSCVEVCPSFAIKE 627 (640)
T ss_pred CCCCCHHHHHCCCHHHCCC
T ss_conf 0357602230086454200
No 187
>PTZ00305 NADH:ubiquinone oxidoreductase; Provisional
Probab=93.98 E-value=0.043 Score=32.67 Aligned_cols=83 Identities=17% Similarity=0.219 Sum_probs=47.9
Q ss_pred CCCCCCCCCCCCCHHCCCEEEEEECCCCCCCEECCCCHHHHHH----CCCCCCCCCCCCCCCEEEEEEEEEH--HHCCCC
Q ss_conf 2257875775680005723787405887422134522325330----8832101224544733577888505--555868
Q gi|254780861|r 33 TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA----QAITIESGPRCHDGTRRTVRYDIDM--IKCIYC 106 (163)
Q Consensus 33 T~~YP~e~~~~~~rfRG~~~l~~~~~~~ekCi~C~~C~~~CP~----~aI~i~~~~~~~~~~~~~~~~~id~--~~Ci~C 106 (163)
...|-++|+.+.+.+-|-..-. ...+||.|..|++.|-- ..|-|.. ++++ .....| +|. -+--.=
T Consensus 188 ~sRf~e~KR~V~dk~~GPlI~t----~MtRCIhCTRCVRF~~Evag~~~LGmiG--RG~~--seI~t~-ld~~~~~~~~~ 258 (297)
T PTZ00305 188 IPRYKEDKRAVQDFYFDPQTRV----VLNRCIHCTRCVRFLNEHAQDFNLGMIG--RGGL--SEISTF-LDELEVKTDNN 258 (297)
T ss_pred CCHHCCCCCCCCCCCCCCCCEE----CCCCCCCCCHHHHHHHHHCCCCCCCEEC--CCCC--CCCCHH-HHHHHHHCCCC
T ss_conf 4001047644665667971000----4774646524243077652760013120--5765--300233-44665520037
Q ss_pred CCCHHHCCCCEEECCCCC
Q ss_conf 872333783103036773
Q gi|254780861|r 107 GLCQEACPVDAIVEGPNF 124 (163)
Q Consensus 107 g~Cv~vCP~~AI~~~~~~ 124 (163)
+.-.+.||+++|.+++--
T Consensus 259 ~~v~~lcpvg~~~~~~~~ 276 (297)
T PTZ00305 259 MPVSQLCPVGKLYLGDAD 276 (297)
T ss_pred CCHHHCCCCCCEEECCCC
T ss_conf 856650555404555644
No 188
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=93.96 E-value=0.021 Score=34.56 Aligned_cols=53 Identities=28% Similarity=0.656 Sum_probs=30.2
Q ss_pred CCEECCCCHHHHHHCC-C----CCCC----CCCC-----------CCCCEEEEEEEEEHHHCCCCCCCHHHCCCC
Q ss_conf 2213452232533088-3----2101----2245-----------447335778885055558688723337831
Q gi|254780861|r 62 RCIACKLCEAICPAQA-I----TIES----GPRC-----------HDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 (163)
Q Consensus 62 kCi~C~~C~~~CP~~a-I----~i~~----~~~~-----------~~~~~~~~~~~id~~~Ci~Cg~Cv~vCP~~ 116 (163)
.|++|.-|.- ||.+. | .+-. .... ..+.+.+.. .-+.+.|+.||.|.+.||..
T Consensus 294 ~Ct~C~yC~P-CP~gInIP~~f~lyN~~~~~~~~~~~~~~Y~~l~~~~~~~~~~-~g~as~CieCgqCl~~CPq~ 366 (391)
T COG1453 294 PCTGCRYCLP-CPSGINIPEIFRLYNLAVAFDDVDYAKFRYNMLENGGHWFPGP-KGKASDCIECGQCLEKCPQH 366 (391)
T ss_pred CCCCCCCCCC-CCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCC-CCCCCCCCHHHHHHHCCCCC
T ss_conf 9862541476-9888776889999888886245023588999984567567887-44224563433153349975
No 189
>PRK07860 NADH dehydrogenase subunit G; Validated
Probab=93.69 E-value=0.039 Score=32.90 Aligned_cols=55 Identities=22% Similarity=0.243 Sum_probs=30.8
Q ss_pred CCCEEEE-EECCCCCCCEECCCCHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEH--HHCCCCCC
Q ss_conf 5723787-4058874221345223253308832101224544733577888505--55586887
Q gi|254780861|r 48 RGEHALR-RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDM--IKCIYCGL 108 (163)
Q Consensus 48 RG~~~l~-~~~~~~ekCi~C~~C~~~CP~~aI~i~~~~~~~~~~~~~~~~~id~--~~Ci~Cg~ 108 (163)
||.+... .+.++.-.|.-||.|+.+||++|+.-.... .+...|++.. +.|.+||.
T Consensus 188 RG~~~~I~~~~~~~l~s~~sGncv~vCPvGALt~k~~~------~~aR~Wel~~~~TvC~~C~v 245 (809)
T PRK07860 188 RGALQQVGIYEGEPFQSYFSGNTVQICPVGALTGAAYR------FRARPFDLVSTPSVCEHCAS 245 (809)
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCHH------HCCCCEEEEECCEECCCCCC
T ss_conf 57756446458986665310536654762201465112------02774365762214688776
No 190
>TIGR01660 narH nitrate reductase, beta subunit; InterPro: IPR006547 The nitrate reductase enzyme complex allows bacteria to use nitrate as an electron acceptor during anaerobic growth. The enzyme complex consists of a tetramer that has an alpha, beta and 2 gamma subunits. The alpha and beta subunits have catalytic activity and the gamma subunits attach the enzyme to the membrane and are b-type cytochromes that receive electrons from the quinone pool and transfers them to the beta subunit. The sequences in this family are the beta subunit for nitrate reductase I (narH) and nitrate reductase II (narY) for Gram-positive and Gram-negative bacteria. A few thermophiles and archaea also match the model. A number of the sequences in this set are experimentally characterised, these include: E.Coli NarH (P11349 from SWISSPROT) and NarY (P19318 from SWISSPROT) , , P42176 from SWISSPROT from Bacillus subtilis, and related proteins from Psuedomonas fluorescens, Paracoccus denitrificans, and Halomonas halodenitrificans.; GO: 0008940 nitrate reductase activity, 0042126 nitrate metabolic process, 0009325 nitrate reductase complex.
Probab=93.66 E-value=0.032 Score=33.39 Aligned_cols=49 Identities=37% Similarity=0.634 Sum_probs=37.6
Q ss_pred CEECCCCHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEHHHCCCCCCCHHHCCCCEEECC
Q ss_conf 21345223253308832101224544733577888505555868872333783103036
Q gi|254780861|r 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 (163)
Q Consensus 63 Ci~C~~C~~~CP~~aI~i~~~~~~~~~~~~~~~~~id~~~Ci~Cg~Cv~vCP~~AI~~~ 121 (163)
|+. =.|+..||++||+ ++.+||.- -||..+|=.=-.||-.||-.-|...
T Consensus 186 ClN-PaCvasCPSGAiY----KREEDGiv-----LiDQ~~CRgWR~C~sgCPYKKiYfN 234 (495)
T TIGR01660 186 CLN-PACVASCPSGAIY----KREEDGIV-----LIDQDKCRGWRMCISGCPYKKIYFN 234 (495)
T ss_pred CCC-CCHHCCCCCCCCC----EEECCCCE-----EEECCCCCCCCEEECCCCCCCEEEC
T ss_conf 277-3001258875521----02048506-----7402567743101057886412530
No 191
>TIGR02910 sulfite_red_A sulfite reductase, subunit A; InterPro: IPR014259 This entry represents subunit A, one of the three subunits of the anaerobic sulphite reductase of Salmonella, and close homologues from various Clostridium species, where the three-gene neighbourhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substrates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulphite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulphide gas from sulphite..
Probab=93.43 E-value=0.029 Score=33.73 Aligned_cols=24 Identities=33% Similarity=0.830 Sum_probs=18.9
Q ss_pred HHCCCCCCCHHHCCCC-EEECCCCC
Q ss_conf 5558688723337831-03036773
Q gi|254780861|r 101 IKCIYCGLCQEACPVD-AIVEGPNF 124 (163)
Q Consensus 101 ~~Ci~Cg~Cv~vCP~~-AI~~~~~~ 124 (163)
.|||-||.|--||||= +-+|-+.+
T Consensus 231 sRCI~CGRCn~vCPTCtCf~mqDvf 255 (346)
T TIGR02910 231 SRCIACGRCNTVCPTCTCFSMQDVF 255 (346)
T ss_pred HCCCCCCCCCCCCCCCCCCCEEEEE
T ss_conf 0344577768888763333035455
No 192
>TIGR02163 napH_ ferredoxin-type protein, NapH/MauN family; InterPro: IPR011886 Most members of this family are the NapH protein, found next to NapG,in operons that encode the periplasmic nitrate reductase. Some species with this reductase lack NapC but accomplish electron transfer to NapAB in some other manner, likely to involve NapH, NapG, and/or some other protein. A few members of this protein are designated MauN and are found in methylamine utilization operons in species that appear to lack a periplasmic nitrate reductase.; GO: 0005506 iron ion binding, 0006118 electron transport.
Probab=93.16 E-value=0.019 Score=34.85 Aligned_cols=49 Identities=24% Similarity=0.499 Sum_probs=31.7
Q ss_pred CCCHHHHHHCCCCCCCCCCCCCCCEEEEEEE-EEHHHCCCCCCCHHHCCCC-EEECC
Q ss_conf 5223253308832101224544733577888-5055558688723337831-03036
Q gi|254780861|r 67 KLCEAICPAQAITIESGPRCHDGTRRTVRYD-IDMIKCIYCGLCQEACPVD-AIVEG 121 (163)
Q Consensus 67 ~~C~~~CP~~aI~i~~~~~~~~~~~~~~~~~-id~~~Ci~Cg~Cv~vCP~~-AI~~~ 121 (163)
+=|-..||.+|.+=.- |++-+-+-. .|-.+|.-|+-|.+|||.. .|.+.
T Consensus 175 gWCgHlCP~GA~Yg~i------G~~s~~ki~~~~~~~C~~Cm~C~~vCpEp~VL~~~ 225 (263)
T TIGR02163 175 GWCGHLCPLGALYGLI------GRKSLIKIAASDREKCTNCMDCFNVCPEPQVLRMP 225 (263)
T ss_pred CCCCCCCHHHHHHHHH------HHHHHHHEEECCHHCCCCCCCCCCCCCCHHHCCCC
T ss_conf 6426600457899987------40143212430232268775776015852012500
No 193
>TIGR00276 TIGR00276 iron-sulfur cluster binding protein, putative; InterPro: IPR004453 This is a family of putative iron-sulphur cluster binding proteins. These proteins contain the 4Fe-4S ferredoxins iron-sulphur binding domain..
Probab=93.05 E-value=0.026 Score=33.94 Aligned_cols=22 Identities=41% Similarity=0.883 Sum_probs=19.3
Q ss_pred HHCCCCCCCHHHCCCCEEECCC
Q ss_conf 5558688723337831030367
Q gi|254780861|r 101 IKCIYCGLCQEACPVDAIVEGP 122 (163)
Q Consensus 101 ~~Ci~Cg~Cv~vCP~~AI~~~~ 122 (163)
..|=-|+.|.++|||+||+-..
T Consensus 172 ~~CG~C~~C~~aCPT~AlVep~ 193 (297)
T TIGR00276 172 ERCGKCTKCLDACPTQALVEPE 193 (297)
T ss_pred CCCCCCHHHHHCCCCHHHCCCC
T ss_conf 5787322466328520200664
No 194
>PRK05035 electron transport complex protein RnfC; Provisional
Probab=92.98 E-value=0.033 Score=33.33 Aligned_cols=19 Identities=42% Similarity=1.125 Sum_probs=15.9
Q ss_pred HHCCCCCCCHHHCCCCEEE
Q ss_conf 5558688723337831030
Q gi|254780861|r 101 IKCIYCGLCQEACPVDAIV 119 (163)
Q Consensus 101 ~~Ci~Cg~Cv~vCP~~AI~ 119 (163)
.-||-||.|+++||.+=+.
T Consensus 376 ~~CIRCG~Cv~aCP~~LlP 394 (725)
T PRK05035 376 QACIRCGACADACPASLLP 394 (725)
T ss_pred CCCCCCCHHHHHCCCCCCH
T ss_conf 7775251367638997779
No 195
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=92.91 E-value=0.032 Score=33.45 Aligned_cols=22 Identities=41% Similarity=0.918 Sum_probs=18.5
Q ss_pred EEEEEEHHHCCCCCCCHH--HCCC
Q ss_conf 788850555586887233--3783
Q gi|254780861|r 94 VRYDIDMIKCIYCGLCQE--ACPV 115 (163)
Q Consensus 94 ~~~~id~~~Ci~Cg~Cv~--vCP~ 115 (163)
.++.||...|.+||.|.. .||.
T Consensus 543 ~r~~In~~vC~gCg~C~~~s~Cpa 566 (595)
T TIGR03336 543 GPYKVDQDKCIGCKKCIKELGCPA 566 (595)
T ss_pred CCEEECHHHCCCCCCCCCCCCCCE
T ss_conf 877973532788400033437821
No 196
>TIGR01945 rnfC electron transport complex, RnfABCDGE type, C subunit; InterPro: IPR010208 The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation . A closely related complex in Escherichia coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized . This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase (IPR003667 from INTERPRO), but is distinct. This entry describes the C subunit.; GO: 0051539 4 iron 4 sulfur cluster binding, 0006118 electron transport, 0016020 membrane.
Probab=92.71 E-value=0.034 Score=33.24 Aligned_cols=16 Identities=44% Similarity=1.223 Sum_probs=14.8
Q ss_pred HHCCCCCCCHHHCCCC
Q ss_conf 5558688723337831
Q gi|254780861|r 101 IKCIYCGLCQEACPVD 116 (163)
Q Consensus 101 ~~Ci~Cg~Cv~vCP~~ 116 (163)
..||-||.||++||.+
T Consensus 372 ~~CIRCg~Cv~~CPm~ 387 (444)
T TIGR01945 372 KPCIRCGKCVNVCPMG 387 (444)
T ss_pred CCCCCHHCCCCCCCCC
T ss_conf 7884400101556744
No 197
>COG1150 HdrC Heterodisulfide reductase, subunit C [Energy production and conversion]
Probab=92.10 E-value=0.018 Score=34.94 Aligned_cols=57 Identities=25% Similarity=0.465 Sum_probs=34.1
Q ss_pred CCCCEECCCCHHHHHHCCCCC------CCCCCCCCCCEEEEEEEEEHHHCCCCCCCHHHCCCCEE
Q ss_conf 742213452232533088321------01224544733577888505555868872333783103
Q gi|254780861|r 60 EERCIACKLCEAICPAQAITI------ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 (163)
Q Consensus 60 ~ekCi~C~~C~~~CP~~aI~i------~~~~~~~~~~~~~~~~~id~~~Ci~Cg~Cv~vCP~~AI 118 (163)
.+.|+-||.|...||++-..- ......++...... +-++=.|+.|.-|.+-||.+..
T Consensus 38 l~~C~QCG~CT~sCPs~r~t~y~pR~ii~~~~~g~~d~il~--~~~lW~C~tCytC~eRCPr~v~ 100 (195)
T COG1150 38 LEGCYQCGTCTGSCPSGRFTDYSPRKIIRKARLGLVDLILS--SESLWACVTCYTCTERCPRGVK 100 (195)
T ss_pred HHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHC--CCCCEEEEECHHHHHHCCCCCC
T ss_conf 76764068665778876557888899999998362988861--7740664101204301899998
No 198
>COG1140 NarY Nitrate reductase beta subunit [Energy production and conversion]
Probab=91.92 E-value=0.079 Score=31.02 Aligned_cols=50 Identities=36% Similarity=0.638 Sum_probs=30.9
Q ss_pred CEECC--CCHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEHHHCCCCCCCHHHCCCCEEECC
Q ss_conf 21345--223253308832101224544733577888505555868872333783103036
Q gi|254780861|r 63 CIACK--LCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 (163)
Q Consensus 63 Ci~C~--~C~~~CP~~aI~i~~~~~~~~~~~~~~~~~id~~~Ci~Cg~Cv~vCP~~AI~~~ 121 (163)
|-.|- .|+.+||.+||. ++.+||-- -||..+|-+=..||..||-.-|.+.
T Consensus 183 CeHCLNPsCvasCPsgaiY----KReEDGIV-----LiDQd~CRGwR~CvsgCPYKKvYfN 234 (513)
T COG1140 183 CEHCLNPSCVASCPSGAIY----KREEDGIV-----LIDQDKCRGWRMCVSGCPYKKVYFN 234 (513)
T ss_pred HHHCCCCHHHHCCCCCCCC----CCCCCCEE-----EEECCCCCCHHHHHCCCCCCEEEEE
T ss_conf 7641891886328865521----14668669-----9612324403444137984136763
No 199
>PRK05950 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=91.90 E-value=0.05 Score=32.24 Aligned_cols=17 Identities=35% Similarity=1.179 Sum_probs=15.1
Q ss_pred EHHHCCCCCCCHHHCCC
Q ss_conf 05555868872333783
Q gi|254780861|r 99 DMIKCIYCGLCQEACPV 115 (163)
Q Consensus 99 d~~~Ci~Cg~Cv~vCP~ 115 (163)
++..||.||.|+.+||.
T Consensus 142 ~~~~CI~Cg~C~saCp~ 158 (235)
T PRK05950 142 GLYECILCACCSTSCPS 158 (235)
T ss_pred HHHHHHHHCCHHHHCCC
T ss_conf 68761412115744966
No 200
>PRK08166 NADH dehydrogenase subunit G; Validated
Probab=91.85 E-value=0.097 Score=30.49 Aligned_cols=42 Identities=17% Similarity=0.369 Sum_probs=23.8
Q ss_pred CCEECCCCHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEH--HHCCCCCC
Q ss_conf 221345223253308832101224544733577888505--55586887
Q gi|254780861|r 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDM--IKCIYCGL 108 (163)
Q Consensus 62 kCi~C~~C~~~CP~~aI~i~~~~~~~~~~~~~~~~~id~--~~Ci~Cg~ 108 (163)
.|--||.|+.+||++|+.-.... .+....|++.. +.|.+||.
T Consensus 190 ~s~f~Gncv~vCPvGALt~k~~~-----~~~~R~wdl~~~~SvC~~Cgv 233 (858)
T PRK08166 190 ESEFSGNLVEVCPTGVFTDKTHS-----ERYNRKWDMQFAPSICQHCSV 233 (858)
T ss_pred CCCCCCCHHHHCCCCCCCCCCHH-----HCCCCCHHCEECCEECCCCCC
T ss_conf 66134533430775543464212-----104772221137634688877
No 201
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=91.66 E-value=0.059 Score=31.80 Aligned_cols=24 Identities=21% Similarity=0.505 Sum_probs=18.5
Q ss_pred EEEEHHHCCCCCCCHHHCCCCEEE
Q ss_conf 885055558688723337831030
Q gi|254780861|r 96 YDIDMIKCIYCGLCQEACPVDAIV 119 (163)
Q Consensus 96 ~~id~~~Ci~Cg~Cv~vCP~~AI~ 119 (163)
..+|..+||.||.||.+|-..+-.
T Consensus 611 i~~d~~kCi~Cg~Cv~~c~e~~~~ 634 (652)
T PRK12814 611 IRFEREKCVDCGICVRTLEEYGAE 634 (652)
T ss_pred EEECCCCCCCHHHHHHHHHHHCCC
T ss_conf 265686453346899998864467
No 202
>COG1035 FrhB Coenzyme F420-reducing hydrogenase, beta subunit [Energy production and conversion]
Probab=91.44 E-value=0.069 Score=31.37 Aligned_cols=18 Identities=28% Similarity=0.409 Sum_probs=12.0
Q ss_pred CCCCCCHHHCCCCE-EECC
Q ss_conf 86887233378310-3036
Q gi|254780861|r 104 IYCGLCQEACPVDA-IVEG 121 (163)
Q Consensus 104 i~Cg~Cv~vCP~~A-I~~~ 121 (163)
-.|..|.+.+|..| |+.+
T Consensus 239 ~gC~~C~D~~a~~ADiSvG 257 (332)
T COG1035 239 EGCRVCTDFVAELADISVG 257 (332)
T ss_pred CCCEEHHHCCCCCCCCCCC
T ss_conf 7771055406553560102
No 203
>PRK08640 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=91.24 E-value=0.053 Score=32.10 Aligned_cols=18 Identities=50% Similarity=1.211 Sum_probs=15.6
Q ss_pred EHHHCCCCCCCHHHCCCC
Q ss_conf 055558688723337831
Q gi|254780861|r 99 DMIKCIYCGLCQEACPVD 116 (163)
Q Consensus 99 d~~~Ci~Cg~Cv~vCP~~ 116 (163)
++..||.||.|+.+||.-
T Consensus 148 ~~~~CI~Cg~C~saCp~~ 165 (252)
T PRK08640 148 ELSKCMTCGCCLEACPNV 165 (252)
T ss_pred HHHHHHHHCCCCCCCCCC
T ss_conf 656666540232237612
No 204
>TIGR03287 methan_mark_16 putative methanogenesis marker 16 metalloprotein. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. This protein is a predicted to bind FeS clusters, based on the presence of two copies of the Fer4 domain (pfam00037), with each copy having four Cys residues invariant across all members.
Probab=91.20 E-value=0.065 Score=31.55 Aligned_cols=22 Identities=45% Similarity=0.931 Sum_probs=10.7
Q ss_pred EEHHHCCCCCCC--HHHCCCCEEE
Q ss_conf 505555868872--3337831030
Q gi|254780861|r 98 IDMIKCIYCGLC--QEACPVDAIV 119 (163)
Q Consensus 98 id~~~Ci~Cg~C--v~vCP~~AI~ 119 (163)
+|..+|.-|-.| +++||++||.
T Consensus 299 ~~p~~C~~C~~C~~~~~CP~~ai~ 322 (391)
T TIGR03287 299 YNPERCENCDPCLVEEACPVPAIK 322 (391)
T ss_pred CCCCCCCCCCCHHHHHCCCCCCCC
T ss_conf 171004557400354408842014
No 205
>PRK12386 fumarate reductase iron-sulfur subunit; Provisional
Probab=90.82 E-value=0.024 Score=34.18 Aligned_cols=19 Identities=47% Similarity=0.941 Sum_probs=16.1
Q ss_pred EHHHCCCCCCCHHHCCCCE
Q ss_conf 0555586887233378310
Q gi|254780861|r 99 DMIKCIYCGLCQEACPVDA 117 (163)
Q Consensus 99 d~~~Ci~Cg~Cv~vCP~~A 117 (163)
++..||.||.|+.+||+-+
T Consensus 140 ~~~~CI~CgaC~saCp~~~ 158 (250)
T PRK12386 140 EFRKCIECFLCQNVCHVVR 158 (250)
T ss_pred HHHHHHHHHHHHCCCCCCC
T ss_conf 8877555455453578666
No 206
>PRK07570 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Validated
Probab=90.79 E-value=0.073 Score=31.24 Aligned_cols=19 Identities=47% Similarity=1.106 Sum_probs=16.4
Q ss_pred EEHHHCCCCCCCHHHCCCC
Q ss_conf 5055558688723337831
Q gi|254780861|r 98 IDMIKCIYCGLCQEACPVD 116 (163)
Q Consensus 98 id~~~Ci~Cg~Cv~vCP~~ 116 (163)
+++..||.||.|+.+||..
T Consensus 154 ~~~~~CI~Cg~C~saCPn~ 172 (247)
T PRK07570 154 MDAAACIGCGACVAACPNG 172 (247)
T ss_pred HCHHHHHCCCHHHHCCCCC
T ss_conf 3523301133444108986
No 207
>PRK12385 fumarate reductase iron-sulfur subunit; Provisional
Probab=90.50 E-value=0.027 Score=33.92 Aligned_cols=19 Identities=47% Similarity=1.079 Sum_probs=15.7
Q ss_pred EHHHCCCCCCCHHHCCCCE
Q ss_conf 0555586887233378310
Q gi|254780861|r 99 DMIKCIYCGLCQEACPVDA 117 (163)
Q Consensus 99 d~~~Ci~Cg~Cv~vCP~~A 117 (163)
.+..||.||.|+.+||.-+
T Consensus 144 ~~~~CI~Cg~C~saCp~~~ 162 (243)
T PRK12385 144 QFSGCINCGLCYAACPQFG 162 (243)
T ss_pred HHHHHHHCCHHHHCCCCCC
T ss_conf 0126655238764288756
No 208
>PRK12575 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=90.23 E-value=0.078 Score=31.06 Aligned_cols=17 Identities=41% Similarity=1.153 Sum_probs=14.6
Q ss_pred HHHCCCCCCCHHHCCCC
Q ss_conf 55558688723337831
Q gi|254780861|r 100 MIKCIYCGLCQEACPVD 116 (163)
Q Consensus 100 ~~~Ci~Cg~Cv~vCP~~ 116 (163)
+..||.||.|+.+||+-
T Consensus 143 ~~~CI~Cg~C~saCp~~ 159 (235)
T PRK12575 143 LYECILCACCSSACPSY 159 (235)
T ss_pred HHHHHHHHHHHHHHCCC
T ss_conf 88755033388664661
No 209
>TIGR00403 ndhI NADH-plastoquinone oxidoreductase, I subunit; InterPro: IPR004497 NADH-plastoquinone oxidoreductase subunit I (1.6.5.3 from EC) catalyses the conversion of plastoquinone and NADH to plastoquinol and NAD(+). The enzyme binds two 4FE-4S clusters at iron-sulphur centres which are similar to those of the bacterial-type 4FE-4S ferredoxins.; GO: 0008137 NADH dehydrogenase (ubiquinone) activity, 0006118 electron transport.
Probab=90.03 E-value=0.076 Score=31.13 Aligned_cols=18 Identities=39% Similarity=1.191 Sum_probs=10.9
Q ss_pred EHHHCCCCCCCHHHCCCC
Q ss_conf 055558688723337831
Q gi|254780861|r 99 DMIKCIYCGLCQEACPVD 116 (163)
Q Consensus 99 d~~~Ci~Cg~Cv~vCP~~ 116 (163)
.+.+||-|..||.+||.+
T Consensus 61 efdkCiaCevCvrvCPi~ 78 (187)
T TIGR00403 61 EFDKCIACEVCVRVCPIN 78 (187)
T ss_pred EECCEEEEEEEEEEECCC
T ss_conf 313334423456762143
No 210
>TIGR00314 cdhA CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit; InterPro: IPR004460 Acetyl-CoA decarbonylase/synthase (ACDS) is a multienzyme complex (carbon monoxide dehydrogenase is a synonym). The ACDS complex carries out an unusual reaction involving the reversible cleavage and synthesis of acetyl-CoA in methanogens. The family contains the 4Fe-4S ferredoxin domain [C-x(2)-C-x(2)-C-x(3)-C-[PEG]] between residues 448-462 of the model.; GO: 0018492 carbon-monoxide dehydrogenase (acceptor) activity, 0006084 acetyl-CoA metabolic process.
Probab=89.81 E-value=0.077 Score=31.11 Aligned_cols=15 Identities=53% Similarity=1.313 Sum_probs=7.3
Q ss_pred HCCCCCCCHHHCCCC
Q ss_conf 558688723337831
Q gi|254780861|r 102 KCIYCGLCQEACPVD 116 (163)
Q Consensus 102 ~Ci~Cg~Cv~vCP~~ 116 (163)
.|+-||.|.-+||..
T Consensus 409 ~CT~Cg~C~~~CP~~ 423 (795)
T TIGR00314 409 KCTQCGNCTRACPNS 423 (795)
T ss_pred HCCCCCCCCCCCCCC
T ss_conf 367887754458786
No 211
>TIGR03379 glycerol3P_GlpC glycerol-3-phosphate dehydrogenase, anaerobic, C subunit. Members of this protein family are the membrane-anchoring, non-catalytic C subunit, product of the glpC gene, of a three-subunit, FAD-dependent, anaerobic glycerol-3-phosphate dehydrogenase. GlpC lasks classical hydrophobic transmembrane helices; Cole, et al suggest interaction with the membrane may involve amphipathic helices. GlcC has conserved Cys-containing motifs suggestive of iron-sulfur binding. This complex is found mostly in Escherichia coli and closely related species.
Probab=89.75 E-value=0.13 Score=29.76 Aligned_cols=18 Identities=39% Similarity=1.030 Sum_probs=15.2
Q ss_pred CCCCCEECCCCHHHHHHC
Q ss_conf 874221345223253308
Q gi|254780861|r 59 GEERCIACKLCEAICPAQ 76 (163)
Q Consensus 59 ~~ekCi~C~~C~~~CP~~ 76 (163)
..+.|++|+.|+.+||++
T Consensus 50 ~l~~C~~C~~C~~~CP~g 67 (397)
T TIGR03379 50 ALKYCTNCKRCEVACPSD 67 (397)
T ss_pred HHHHCCCCCCCCCCCCCC
T ss_conf 616382768836538799
No 212
>COG0479 FrdB Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit [Energy production and conversion]
Probab=89.74 E-value=0.12 Score=30.02 Aligned_cols=20 Identities=40% Similarity=0.996 Sum_probs=16.6
Q ss_pred EHHHCCCCCCCHHHCCCCEE
Q ss_conf 05555868872333783103
Q gi|254780861|r 99 DMIKCIYCGLCQEACPVDAI 118 (163)
Q Consensus 99 d~~~Ci~Cg~Cv~vCP~~AI 118 (163)
.+..||.||.|..+||.-..
T Consensus 140 ~~~~CI~Cg~C~s~CP~~~~ 159 (234)
T COG0479 140 ELSECILCGCCTAACPSIWW 159 (234)
T ss_pred HHHHCCCCCHHHHHCCCCCC
T ss_conf 55436214440422875323
No 213
>PRK11168 glpC sn-glycerol-3-phosphate dehydrogenase subunit C; Provisional
Probab=89.61 E-value=0.15 Score=29.35 Aligned_cols=18 Identities=39% Similarity=0.966 Sum_probs=15.2
Q ss_pred CCCCEECCCCHHHHHHCC
Q ss_conf 742213452232533088
Q gi|254780861|r 60 EERCIACKLCEAICPAQA 77 (163)
Q Consensus 60 ~ekCi~C~~C~~~CP~~a 77 (163)
.+.|++|+.|+.+||++.
T Consensus 57 ld~C~~C~~C~~~CP~~V 74 (400)
T PRK11168 57 LKYCSNCKRCEVACPSGV 74 (400)
T ss_pred HHHCCCCCCCCCCCCCCC
T ss_conf 153747488374271999
No 214
>PRK13552 frdB fumarate reductase iron-sulfur subunit; Provisional
Probab=89.48 E-value=0.033 Score=33.31 Aligned_cols=20 Identities=35% Similarity=0.959 Sum_probs=16.4
Q ss_pred EEHHHCCCCCCCHHHCCCCE
Q ss_conf 50555586887233378310
Q gi|254780861|r 98 IDMIKCIYCGLCQEACPVDA 117 (163)
Q Consensus 98 id~~~Ci~Cg~Cv~vCP~~A 117 (163)
.++..||.||.|+.+||.-.
T Consensus 146 ~~~~~CI~Cg~C~saCp~~~ 165 (240)
T PRK13552 146 YELDRCIECGCCVAACATKQ 165 (240)
T ss_pred HHHHHHHHHHCCCCCCCCHH
T ss_conf 98999887530032385211
No 215
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=88.79 E-value=0.12 Score=29.86 Aligned_cols=39 Identities=26% Similarity=0.658 Sum_probs=25.8
Q ss_pred CCCCCEECCCCHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEHHHCCCCCCCHHHCCCCEEE
Q ss_conf 8742213452232533088321012245447335778885055558688723337831030
Q gi|254780861|r 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 (163)
Q Consensus 59 ~~ekCi~C~~C~~~CP~~aI~i~~~~~~~~~~~~~~~~~id~~~Ci~Cg~Cv~vCP~~AI~ 119 (163)
|.+|||.||+|+++|-..+-. |. +|+. .=++.|||+||+
T Consensus 614 d~~kCi~Cg~Cv~~c~e~~~~---------g~-------~~~~------~~~~~~~~~~~~ 652 (652)
T PRK12814 614 EREKCVDCGICVRTLEEYGAE---------GN-------TDIE------VLAESCPTGALS 652 (652)
T ss_pred CCCCCCCHHHHHHHHHHHCCC---------CC-------HHHH------HHHHHCCCCCCC
T ss_conf 686453346899998864467---------73-------0189------887408876689
No 216
>TIGR00384 dhsB succinate dehydrogenase and fumarate reductase iron-sulfur protein; InterPro: IPR004489 Succinate dehydrogenase and fumarate reductase are reverse directions of the same enzymatic interconversion, succinate + FAD+ = fumarate + FADH2 (1.3.99.1 from EC). In Escherichia coli, the forward and reverse reactions are catalyzed by distinct complexes: fumarate reductase operates under anaerobic conditions and succinate dehydrogenase operates under aerobic conditions. This group also includes a region of the B subunit of a cytosolic archaeal fumarate reductase.; GO: 0016491 oxidoreductase activity, 0006099 tricarboxylic acid cycle, 0006118 electron transport.
Probab=88.21 E-value=0.16 Score=29.21 Aligned_cols=60 Identities=27% Similarity=0.470 Sum_probs=36.0
Q ss_pred CCCCCEECCCCHHHHHHCCCCCC-CC---------------CCCCCCCEEEEE--EEEEHHHCCCCCCCHHHCCCCEE
Q ss_conf 87422134522325330883210-12---------------245447335778--88505555868872333783103
Q gi|254780861|r 59 GEERCIACKLCEAICPAQAITIE-SG---------------PRCHDGTRRTVR--YDIDMIKCIYCGLCQEACPVDAI 118 (163)
Q Consensus 59 ~~ekCi~C~~C~~~CP~~aI~i~-~~---------------~~~~~~~~~~~~--~~id~~~Ci~Cg~Cv~vCP~~AI 118 (163)
+...||.|+.|...||.....-+ -. .......+.... -....-.|..|+.|.++||.+.-
T Consensus 149 ~~~~c~~c~~c~~~cp~~~~~~~~~~gp~~~~~~~~~~~d~~d~~~~~~~~~~~~~~~~~~~c~~~~~c~~~cp~~~~ 226 (236)
T TIGR00384 149 GLSGCILCGACYSSCPAFWWNPDKFLGPAALTKAYRFLLDSRDGGTKDRLELLNNDSNGVWGCTTCGKCSEVCPKGLD 226 (236)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCC
T ss_conf 666677775554320200035310124689999988740443310245676530121220012334444442122132
No 217
>COG1600 Uncharacterized Fe-S protein [Energy production and conversion]
Probab=88.15 E-value=0.11 Score=30.22 Aligned_cols=22 Identities=36% Similarity=0.730 Sum_probs=19.0
Q ss_pred HHCCCCCCCHHHCCCCEEECCC
Q ss_conf 5558688723337831030367
Q gi|254780861|r 101 IKCIYCGLCQEACPVDAIVEGP 122 (163)
Q Consensus 101 ~~Ci~Cg~Cv~vCP~~AI~~~~ 122 (163)
..|--|..|+++||++||.-..
T Consensus 185 ~~Cg~C~~CidaCPt~Al~~~~ 206 (337)
T COG1600 185 DHCGSCTRCLDACPTGALVAPY 206 (337)
T ss_pred CCCHHHHHHHHHCCCCCCCCCC
T ss_conf 7572168998639853427887
No 218
>PRK11274 glcF glycolate oxidase iron-sulfur subunit; Provisional
Probab=87.93 E-value=0.26 Score=27.88 Aligned_cols=17 Identities=41% Similarity=1.329 Sum_probs=13.8
Q ss_pred CCCEECCCCHHHHHHCC
Q ss_conf 42213452232533088
Q gi|254780861|r 61 ERCIACKLCEAICPAQA 77 (163)
Q Consensus 61 ekCi~C~~C~~~CP~~a 77 (163)
+.|.+|+.|+.+||++.
T Consensus 73 d~Cl~C~~C~~~CP~gV 89 (407)
T PRK11274 73 DRCLTCRNCETTCPSGV 89 (407)
T ss_pred HHCCCCCCCCCCCCCCC
T ss_conf 75718587465378999
No 219
>PRK00941 acetyl-CoA decarbonylase/synthase complex subunit alpha; Validated
Probab=87.79 E-value=0.13 Score=29.75 Aligned_cols=16 Identities=44% Similarity=1.296 Sum_probs=7.9
Q ss_pred CCCEECCCCHHHHHHC
Q ss_conf 4221345223253308
Q gi|254780861|r 61 ERCIACKLCEAICPAQ 76 (163)
Q Consensus 61 ekCi~C~~C~~~CP~~ 76 (163)
+.|+||+.|+.+||.+
T Consensus 440 d~CigCgrCE~~C~k~ 455 (779)
T PRK00941 440 DVCIGCGRCEQVCPKN 455 (779)
T ss_pred HHHHHHHHHHHHCCCC
T ss_conf 8620020187754468
No 220
>cd01916 ACS_1 Acetyl-CoA synthase (ACS), also known as acetyl-CoA decarbonylase, is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA. ACS forms a heterotetramer with carbon monoxide dehydrogenase (CODH) consisting of two ACS and two CODH subunits. CODH reduces carbon dioxide to carbon monoxide and ACS then synthesizes acetyl-CoA from carbon monoxide, CoA, and a methyl group donated by another protein (CoFeSP). ACS has three structural domains, an N-terminal rossman fold domain with a helical region at its N-terminus which interacts with CODH, and two alpha + beta fold domains. A Ni-Fe-S center referred to as the A-cluster is located in the C-terminal domain. A large cavity exists between the three domains which may bind CoA.
Probab=87.72 E-value=0.13 Score=29.71 Aligned_cols=16 Identities=50% Similarity=1.240 Sum_probs=7.8
Q ss_pred HHCCCCCCCHHHCCCC
Q ss_conf 5558688723337831
Q gi|254780861|r 101 IKCIYCGLCQEACPVD 116 (163)
Q Consensus 101 ~~Ci~Cg~Cv~vCP~~ 116 (163)
.+|+.||.|..+||.+
T Consensus 365 ~~Ct~C~~C~~~CPn~ 380 (731)
T cd01916 365 AKCTDCGWCTRACPNS 380 (731)
T ss_pred HHCCCCCHHHHHCCCC
T ss_conf 8653232266549886
No 221
>PRK09130 NADH dehydrogenase subunit G; Validated
Probab=85.96 E-value=0.28 Score=27.69 Aligned_cols=19 Identities=21% Similarity=0.305 Sum_probs=15.2
Q ss_pred CEECCCCHHHHHHCCCCCC
Q ss_conf 2134522325330883210
Q gi|254780861|r 63 CIACKLCEAICPAQAITIE 81 (163)
Q Consensus 63 Ci~C~~C~~~CP~~aI~i~ 81 (163)
+--||.|+.+||++|+.-.
T Consensus 187 se~sGn~idvCPvGALtsk 205 (680)
T PRK09130 187 SELSGNVIDLCPVGALTSK 205 (680)
T ss_pred CCCCCCHHHCCCCCCCCCC
T ss_conf 6445332320664442356
No 222
>COG1034 NuoG NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) [Energy production and conversion]
Probab=85.79 E-value=0.14 Score=29.50 Aligned_cols=20 Identities=30% Similarity=0.607 Sum_probs=16.5
Q ss_pred EECCCCHHHHHHCCCCCCCC
Q ss_conf 13452232533088321012
Q gi|254780861|r 64 IACKLCEAICPAQAITIESG 83 (163)
Q Consensus 64 i~C~~C~~~CP~~aI~i~~~ 83 (163)
..||.|+.+||++|+.-.+.
T Consensus 187 e~cGncv~vCPvGALt~K~~ 206 (693)
T COG1034 187 ELCGNCVDVCPVGALTSKPF 206 (693)
T ss_pred CCCCCEEEECCCCCCCCCHH
T ss_conf 11566225465323046707
No 223
>COG4656 RnfC Predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Energy production and conversion]
Probab=85.79 E-value=0.2 Score=28.51 Aligned_cols=19 Identities=47% Similarity=1.200 Sum_probs=16.0
Q ss_pred HHHCCCCCCCHHHCCCCEE
Q ss_conf 5555868872333783103
Q gi|254780861|r 100 MIKCIYCGLCQEACPVDAI 118 (163)
Q Consensus 100 ~~~Ci~Cg~Cv~vCP~~AI 118 (163)
...||-||.|+++||.+=+
T Consensus 364 ~qsCi~C~~C~d~CP~~Ll 382 (529)
T COG4656 364 EQSCIRCSLCADACPVNLL 382 (529)
T ss_pred HHCCCCHHHHHHHCCCCCC
T ss_conf 0115047778774751258
No 224
>TIGR02066 dsrB sulfite reductase, dissimilatory-type beta subunit; InterPro: IPR011808 Dissimilatory sulphite reductase catalyzes the six-electron reduction of sulphite to sulphide, as the terminal reaction in dissimilatory sulphate reduction. It remains unclear however, whether trithionate and thiosulphate serve as intermediate compounds to sulphide, or as end products of sulphite reduction . Sulphite reductase is a multisubunit enzyme composed of dimers of either alpha/beta or alpha/beta/gamma subunits, each containing a siroheme and iron sulphur cluster prosthetic centre . Found in sulphate-reducing bacteria, these genes are commonly located in a unidirectional gene cluster . This entry describes the beta subunit of sulphite reductase.; GO: 0018551 hydrogensulfite reductase activity, 0051539 4 iron 4 sulfur cluster binding, 0006118 electron transport.
Probab=85.75 E-value=0.3 Score=27.48 Aligned_cols=20 Identities=50% Similarity=1.122 Sum_probs=17.0
Q ss_pred CCCCCEECCCCHHHHHHCCC
Q ss_conf 87422134522325330883
Q gi|254780861|r 59 GEERCIACKLCEAICPAQAI 78 (163)
Q Consensus 59 ~~ekCi~C~~C~~~CP~~aI 78 (163)
+++|||-||.|-..||.--|
T Consensus 237 ~~~kCi~CG~Cy~~Cpa~~~ 256 (366)
T TIGR02066 237 DEEKCIYCGNCYTMCPAMPI 256 (366)
T ss_pred CCCEEEECCCCCCCCCCCCC
T ss_conf 47311102774553127877
No 225
>COG1152 CdhA CO dehydrogenase/acetyl-CoA synthase alpha subunit [Energy production and conversion]
Probab=85.07 E-value=0.19 Score=28.69 Aligned_cols=17 Identities=41% Similarity=1.228 Sum_probs=9.8
Q ss_pred CCCCEECCCCHHHHHHC
Q ss_conf 74221345223253308
Q gi|254780861|r 60 EERCIACKLCEAICPAQ 76 (163)
Q Consensus 60 ~ekCi~C~~C~~~CP~~ 76 (163)
++.|+||+.|+.+||.+
T Consensus 437 ~d~C~~C~rCEq~Cpk~ 453 (772)
T COG1152 437 HDVCIGCGRCEQVCPKN 453 (772)
T ss_pred HHHHHHHHHHHHHCCCC
T ss_conf 87743110365517656
No 226
>COG1141 Fer Ferredoxin [Energy production and conversion]
Probab=85.06 E-value=0.34 Score=27.11 Aligned_cols=21 Identities=33% Similarity=0.588 Sum_probs=17.8
Q ss_pred EEEHHHCCCCCCCHHHCCCCE
Q ss_conf 850555586887233378310
Q gi|254780861|r 97 DIDMIKCIYCGLCQEACPVDA 117 (163)
Q Consensus 97 ~id~~~Ci~Cg~Cv~vCP~~A 117 (163)
.+|-.+||.||+|..+||.--
T Consensus 4 ~vDrd~Cigcg~C~~~aPdvF 24 (68)
T COG1141 4 IVDRDTCIGCGACLAVAPDVF 24 (68)
T ss_pred EECHHHCCCCCHHHHCCCCCE
T ss_conf 946465005421434088536
No 227
>PRK12577 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=84.62 E-value=0.29 Score=27.52 Aligned_cols=19 Identities=32% Similarity=0.905 Sum_probs=15.9
Q ss_pred HHHCCCCCCCHHHCCCCEE
Q ss_conf 5555868872333783103
Q gi|254780861|r 100 MIKCIYCGLCQEACPVDAI 118 (163)
Q Consensus 100 ~~~Ci~Cg~Cv~vCP~~AI 118 (163)
+..||.||.|.-+||+-..
T Consensus 151 ~~~CIlCg~C~SaCp~~~~ 169 (330)
T PRK12577 151 TGNCILCGACYSECNAREV 169 (330)
T ss_pred CCCCCCCCCCCCCCCCCCC
T ss_conf 6747010631051877444
No 228
>TIGR02060 aprB adenylylsulfate reductase, beta subunit; InterPro: IPR011802 During dissimilatory sulphate reduction and sulphur oxidation, adenylylsulphate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulphite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. This entry describes the beta subunit of APS reductase, which shares a common evolutionary origin with other iron-sulphur cluster-binding proteins..
Probab=84.54 E-value=0.29 Score=27.60 Aligned_cols=22 Identities=36% Similarity=0.899 Sum_probs=19.3
Q ss_pred CCCEECCCCHHHHHHCCCCCCC
Q ss_conf 4221345223253308832101
Q gi|254780861|r 61 ERCIACKLCEAICPAQAITIES 82 (163)
Q Consensus 61 ekCi~C~~C~~~CP~~aI~i~~ 82 (163)
+-|=-|..|+++||.+||++..
T Consensus 45 ~~CWECYSCVK~CP~~AI~vRg 66 (138)
T TIGR02060 45 DMCWECYSCVKICPQGAIDVRG 66 (138)
T ss_pred CCCCCCCCCCCCCCCCCEECCC
T ss_conf 6631210001218887411266
No 229
>TIGR02064 dsrA sulfite reductase, dissimilatory-type alpha subunit; InterPro: IPR011806 Dissimilatory sulphite reductase catalyzes the six-electron reduction of sulphite to sulphide, as the terminal reaction in dissimilatory sulphate reduction. It remains unclear however, whether trithionate and thiosulphate serve as intermediate compounds to sulphide, or as end products of sulphite reduction . Sulphite reductase is a multisubunit enzyme composed of dimers of either alpha/beta or alpha/beta/gamma subunits, each containing a siroheme and iron sulphur cluster prosthetic centre . Found in sulphate-reducing bacteria, these genes are commonly located in a unidirectional gene cluster .; GO: 0018551 hydrogensulfite reductase activity, 0020037 heme binding, 0051539 4 iron 4 sulfur cluster binding.
Probab=83.08 E-value=0.58 Score=25.72 Aligned_cols=44 Identities=27% Similarity=0.576 Sum_probs=24.2
Q ss_pred HHHHHHCCCCCCCCCCCCCCCEEEEEEEEEHHHCCCCCCCHHHCCCCEEECCCC
Q ss_conf 325330883210122454473357788850555586887233378310303677
Q gi|254780861|r 70 EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 (163)
Q Consensus 70 ~~~CP~~aI~i~~~~~~~~~~~~~~~~~id~~~Ci~Cg~Cv~vCP~~AI~~~~~ 123 (163)
+.-||+.||+.+..++ . .+||-.+|.-|-.|+..-|. ||.-+++
T Consensus 277 v~~Cp~~A~~wd~~~k------~---L~idn~~CvrCMhCin~mp~-AlkpGde 320 (430)
T TIGR02064 277 VSRCPTGAISWDGEKK------E---LKIDNRECVRCMHCINKMPK-ALKPGDE 320 (430)
T ss_pred HHHCCCCCCCCCCCCC------E---EEECCCCCCCCCCHHHCCCH-HCCCCCC
T ss_conf 7517774402168876------3---62368625412101311430-0478775
No 230
>TIGR01660 narH nitrate reductase, beta subunit; InterPro: IPR006547 The nitrate reductase enzyme complex allows bacteria to use nitrate as an electron acceptor during anaerobic growth. The enzyme complex consists of a tetramer that has an alpha, beta and 2 gamma subunits. The alpha and beta subunits have catalytic activity and the gamma subunits attach the enzyme to the membrane and are b-type cytochromes that receive electrons from the quinone pool and transfers them to the beta subunit. The sequences in this family are the beta subunit for nitrate reductase I (narH) and nitrate reductase II (narY) for Gram-positive and Gram-negative bacteria. A few thermophiles and archaea also match the model. A number of the sequences in this set are experimentally characterised, these include: E.Coli NarH (P11349 from SWISSPROT) and NarY (P19318 from SWISSPROT) , , P42176 from SWISSPROT from Bacillus subtilis, and related proteins from Psuedomonas fluorescens, Paracoccus denitrificans, and Halomonas halodenitrificans.; GO: 0008940 nitrate reductase activity, 0042126 nitrate metabolic process, 0009325 nitrate reductase complex.
Probab=82.06 E-value=0.65 Score=25.41 Aligned_cols=47 Identities=30% Similarity=0.716 Sum_probs=36.2
Q ss_pred CCCCCEECCCCHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEHHHCCCC---------CCCHHHCCCCEEE
Q ss_conf 874221345223253308832101224544733577888505555868---------8723337831030
Q gi|254780861|r 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYC---------GLCQEACPVDAIV 119 (163)
Q Consensus 59 ~~ekCi~C~~C~~~CP~~aI~i~~~~~~~~~~~~~~~~~id~~~Ci~C---------g~Cv~vCP~~AI~ 119 (163)
|.++|-|=.+|+..||..-|+..+..... .+|||| -.|.|.| ++-|.
T Consensus 212 DQ~~CRgWR~C~sgCPYKKiYfNW~~gKs-------------EKCi~CyPR~EaG~PTvCsETC-VGRIR 267 (495)
T TIGR01660 212 DQDKCRGWRMCISGCPYKKIYFNWKTGKS-------------EKCILCYPRLEAGQPTVCSETC-VGRIR 267 (495)
T ss_pred ECCCCCCCCEEECCCCCCCEEECCCCCCC-------------CEEEECCCCHHCCCCCCCCCCC-CCHHH
T ss_conf 02567743101057886412530367871-------------3024226621047682013212-10477
No 231
>COG0247 GlpC Fe-S oxidoreductase [Energy production and conversion]
Probab=81.61 E-value=0.57 Score=25.78 Aligned_cols=20 Identities=30% Similarity=0.848 Sum_probs=16.3
Q ss_pred CCCCEECCCCHHHHHHCCCC
Q ss_conf 74221345223253308832
Q gi|254780861|r 60 EERCIACKLCEAICPAQAIT 79 (163)
Q Consensus 60 ~ekCi~C~~C~~~CP~~aI~ 79 (163)
...|+.|+.|+.+||.+.-.
T Consensus 57 ~~~C~~C~~C~~~CP~~i~~ 76 (388)
T COG0247 57 LDTCLACGACATACPSGIDI 76 (388)
T ss_pred HHHHCCHHHHHHHCCCCCCH
T ss_conf 77500536899848878974
No 232
>COG4624 Iron only hydrogenase large subunit, C-terminal domain [General function prediction only]
Probab=81.39 E-value=0.39 Score=26.78 Aligned_cols=53 Identities=17% Similarity=0.263 Sum_probs=33.2
Q ss_pred CCCEECCCCHHHHHH--CCCCCCCCCCCCCCCEEEEEEEEEHHHCCCCCCCHHHCCCCEEECCCC
Q ss_conf 422134522325330--883210122454473357788850555586887233378310303677
Q gi|254780861|r 61 ERCIACKLCEAICPA--QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 (163)
Q Consensus 61 ekCi~C~~C~~~CP~--~aI~i~~~~~~~~~~~~~~~~~id~~~Ci~Cg~Cv~vCP~~AI~~~~~ 123 (163)
.+|+.|+.| ++|-. +.|.+. -....+++-+..|..|.-|+..||+.+|..+..
T Consensus 2 s~~~~~~~~-k~~~~~~g~~ei~---------~~~~~~~~~lsdc~~c~gci~s~~~~li~~~s~ 56 (411)
T COG4624 2 KPLQVVSVE-KDDETYDGKYEIS---------SMLEKISISLSDCLACSGCITSCEVKAISLQSG 56 (411)
T ss_pred CCCCCCCCC-CCCCCCCCEEEEE---------ECCCCCCCCHHHHHHHHCCCCCCHHHHHHHCCH
T ss_conf 862247640-1441235469974---------313000244112236506303886776551220
No 233
>TIGR00273 TIGR00273 iron-sulfur cluster binding protein; InterPro: IPR004452 Members of this family have a perfect 4Fe-4S binding motif C-x(2)-C-x(2)-C-x(3)-CP followed by either a perfect or imperfect (the first Cys replaced by Ser) second copy. Members probably bind two 4fe-4S iron-sulphur clusters..
Probab=81.10 E-value=0.43 Score=26.54 Aligned_cols=26 Identities=35% Similarity=0.994 Sum_probs=19.4
Q ss_pred EHHHCCCCCCCHHHCCCCEEECCCCC
Q ss_conf 05555868872333783103036773
Q gi|254780861|r 99 DMIKCIYCGLCQEACPVDAIVEGPNF 124 (163)
Q Consensus 99 d~~~Ci~Cg~Cv~vCP~~AI~~~~~~ 124 (163)
+...||-||.|...||+--..-++-|
T Consensus 294 ~~L~CiRCG~C~n~CPvY~~~Ggh~Y 319 (450)
T TIGR00273 294 EVLACIRCGACLNECPVYRHIGGHAY 319 (450)
T ss_pred HHHHHHHHHHHHCCCCHHHCCCCCCC
T ss_conf 87413301234114860111466024
No 234
>COG1941 FrhG Coenzyme F420-reducing hydrogenase, gamma subunit [Energy production and conversion]
Probab=81.10 E-value=0.48 Score=26.23 Aligned_cols=25 Identities=32% Similarity=0.739 Sum_probs=21.8
Q ss_pred EEHH-HCCCCCCCHHHCCCCEEECCC
Q ss_conf 5055-558688723337831030367
Q gi|254780861|r 98 IDMI-KCIYCGLCQEACPVDAIVEGP 122 (163)
Q Consensus 98 id~~-~Ci~Cg~Cv~vCP~~AI~~~~ 122 (163)
++.+ -|++||.|...||+.||.+..
T Consensus 186 l~qg~~C~G~~TC~A~CP~~ai~c~G 211 (247)
T COG1941 186 LEQGLPCMGCGTCAASCPSRAIPCRG 211 (247)
T ss_pred ECCCCCCCCCHHHHCCCCCCCCCCCC
T ss_conf 13698434724543539735776437
No 235
>PRK12576 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=79.68 E-value=0.55 Score=25.87 Aligned_cols=19 Identities=63% Similarity=1.447 Sum_probs=16.3
Q ss_pred HHHCCCCCCCHHHCCCCEE
Q ss_conf 5555868872333783103
Q gi|254780861|r 100 MIKCIYCGLCQEACPVDAI 118 (163)
Q Consensus 100 ~~~Ci~Cg~Cv~vCP~~AI 118 (163)
+..||.||.|..+||+-+.
T Consensus 147 ~~~CIlCg~C~s~Cp~~~~ 165 (311)
T PRK12576 147 FAQCIWCGLCVSACPVVAI 165 (311)
T ss_pred HHHCHHHHHHHHCCCCCCC
T ss_conf 5434225078601899687
No 236
>TIGR03290 CoB_CoM_SS_C CoB--CoM heterodisulfide reductase, subunit C. The last step in methanogenesis leaves two coenzymes of methanogenesis, CoM and CoB, linked by a disulfide bond. Members of this protein family are the C subunit of the enzyme that reduces the heterodisulfide to CoB-SH and CoM-SH. Similar enzyme complex subunits are found in various other species, but likely act on a different substrate.
Probab=79.54 E-value=0.68 Score=25.31 Aligned_cols=19 Identities=26% Similarity=0.723 Sum_probs=15.6
Q ss_pred CCCCCEECCCCHHHHHHCC
Q ss_conf 8742213452232533088
Q gi|254780861|r 59 GEERCIACKLCEAICPAQA 77 (163)
Q Consensus 59 ~~ekCi~C~~C~~~CP~~a 77 (163)
+.-.|+.|+.|..+||.+.
T Consensus 44 ~lW~C~tC~~C~~~CP~gV 62 (144)
T TIGR03290 44 DLWMCTTCYTCQERCPRDV 62 (144)
T ss_pred CCCCCCCCCCHHHHCCCCC
T ss_conf 6303847375401348999
No 237
>COG1139 Uncharacterized conserved protein containing a ferredoxin-like domain [Energy production and conversion]
Probab=79.30 E-value=0.51 Score=26.06 Aligned_cols=24 Identities=38% Similarity=1.049 Sum_probs=18.0
Q ss_pred HHCCCCCCCHHHCCCCEEECCCCC
Q ss_conf 555868872333783103036773
Q gi|254780861|r 101 IKCIYCGLCQEACPVDAIVEGPNF 124 (163)
Q Consensus 101 ~~Ci~Cg~Cv~vCP~~AI~~~~~~ 124 (163)
.+||-||.|..+||+-...-++-|
T Consensus 308 L~CIRCGaC~n~CPvY~~iGgh~y 331 (459)
T COG1139 308 LRCIRCGACLNHCPVYRHIGGHAY 331 (459)
T ss_pred HHHHCCHHHHHCCHHHHHCCCEEC
T ss_conf 876000076513815665367202
No 238
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=72.18 E-value=1.5 Score=23.18 Aligned_cols=56 Identities=18% Similarity=0.339 Sum_probs=26.9
Q ss_pred CCCCEECCC--CHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEHHHCCCCCCCHHHCCCC
Q ss_conf 742213452--232533088321012245447335778885055558688723337831
Q gi|254780861|r 60 EERCIACKL--CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 (163)
Q Consensus 60 ~ekCi~C~~--C~~~CP~~aI~i~~~~~~~~~~~~~~~~~id~~~Ci~Cg~Cv~vCP~~ 116 (163)
-.+|+.|+. |..+||.+----........|+.. ..+.+-...=-|=+.|-.|||..
T Consensus 43 a~RCl~C~~ppC~~~CP~~~~Ip~~i~~i~~g~~~-~A~~~i~~~np~p~~cGrVCp~~ 100 (472)
T PRK12810 43 AARCMDCGIPFCHWGCPVHNYIPEWNDLVYRGRWE-EAAERLHQTNNFPEFTGRVCPAP 100 (472)
T ss_pred HHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCHH-HHHHHHHHHCCCHHHHHCCCCHH
T ss_conf 98851799986344799999889999999878999-99999987588145876775746
No 239
>PRK12831 putative oxidoreductase; Provisional
Probab=66.73 E-value=2.3 Score=22.10 Aligned_cols=56 Identities=21% Similarity=0.409 Sum_probs=28.7
Q ss_pred CCCCEECC--CCHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEHHHCCCCCCCHHHCCCC
Q ss_conf 74221345--2232533088321012245447335778885055558688723337831
Q gi|254780861|r 60 EERCIACK--LCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 (163)
Q Consensus 60 ~ekCi~C~--~C~~~CP~~aI~i~~~~~~~~~~~~~~~~~id~~~Ci~Cg~Cv~vCP~~ 116 (163)
-.+|..|+ -|..+||.+.---..-.....|+.. ..+.+-..+--|=+.|-.|||.+
T Consensus 39 A~RCl~C~~~pC~~~CP~~~dip~~i~~i~~g~~~-~A~~~i~~~npfp~i~GrVCph~ 96 (464)
T PRK12831 39 ASRCLQCKKPKCVKGCPVSINIPGFISKLKEGDFE-EAAKIIAKYNALPAVCGRVCPQE 96 (464)
T ss_pred HHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCHH-HHHHHHHHHCCHHHHHHCCCCCC
T ss_conf 98861798886665799999789999999878999-99999987588055651538998
No 240
>PRK00783 DNA-directed RNA polymerase subunit D; Provisional
Probab=66.52 E-value=7.9 Score=18.79 Aligned_cols=73 Identities=30% Similarity=0.595 Sum_probs=45.3
Q ss_pred CEECCCCHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEHHHCCCCCCCHHHCCCCEEECC---CCCCCCCCCHHHHCCCHH
Q ss_conf 21345223253308832101224544733577888505555868872333783103036---773567576877332999
Q gi|254780861|r 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG---PNFEFATETRQELYYDKE 139 (163)
Q Consensus 63 Ci~C~~C~~~CP~~aI~i~~~~~~~~~~~~~~~~~id~~~Ci~Cg~Cv~vCP~~AI~~~---~~~e~a~~~r~~l~~~k~ 139 (163)
.-++..+...||.+.+.++..+. . ...-+...|..|..|...|..++|... +.|.+...+ .-.+.++
T Consensus 171 ~~~~~~~~~~~~~~v~~~~~~~~------~--~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~d~f~F~VES--~G~l~p~ 240 (265)
T PRK00783 171 CDGCGECKEECPRSVLEVEENKV------E--VTEEDLEKCSLCRLCERACEGNAIRVGADENRFIFTVET--DGSLPVK 240 (265)
T ss_pred CHHHHHHHHHCCCCCCCCCCCCE------E--EEECCHHHCCHHHHHEECCCCCCEEEEEECCEEEEEEEC--CCCCCHH
T ss_conf 10788887657776221358821------6--874461225422342001666726899618979999976--7888999
Q ss_pred HHHHHH
Q ss_conf 998848
Q gi|254780861|r 140 RLLNNG 145 (163)
Q Consensus 140 ~Ll~~g 145 (163)
.++..+
T Consensus 241 ~i~~~A 246 (265)
T PRK00783 241 EILLIA 246 (265)
T ss_pred HHHHHH
T ss_conf 999999
No 241
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=64.05 E-value=1.5 Score=23.16 Aligned_cols=15 Identities=20% Similarity=0.155 Sum_probs=10.6
Q ss_pred CCCHHHHHHCCCCCC
Q ss_conf 522325330883210
Q gi|254780861|r 67 KLCEAICPAQAITIE 81 (163)
Q Consensus 67 ~~C~~~CP~~aI~i~ 81 (163)
..|+.+||++|+.+.
T Consensus 1 ~rca~~Cp~~A~~~~ 15 (213)
T PRK10076 1 LRDADECPSGAFERI 15 (213)
T ss_pred CCCHHHCHHHHHHHH
T ss_conf 985567877888752
No 242
>PRK11749 putative oxidoreductase; Provisional
Probab=60.79 E-value=3.3 Score=21.12 Aligned_cols=19 Identities=42% Similarity=1.004 Sum_probs=14.5
Q ss_pred CCCCEECC--CCHHHHHHCCC
Q ss_conf 74221345--22325330883
Q gi|254780861|r 60 EERCIACK--LCEAICPAQAI 78 (163)
Q Consensus 60 ~ekCi~C~--~C~~~CP~~aI 78 (163)
-.+|+.|+ -|..+||.+.-
T Consensus 39 a~RCl~C~~~pC~~~CP~~~d 59 (460)
T PRK11749 39 ASRCLQCKDAPCVQACPVQID 59 (460)
T ss_pred HHHHHCCCCCCCCCCCCCCCC
T ss_conf 988747999852237999897
No 243
>cd07030 RNAP_D D subunit of Archaeal RNA polymerase. The D subunit of archaeal RNA polymerase (RNAP) is involved in the assembly of RNAP subunits. RNAP is a large multi-subunit complex responsible for the synthesis of RNA. It is the principal enzyme of the transcription process, and is a final target in many regulatory pathways that control gene expression in all living cells. A single distinct RNAP complex is found in archaea, which may be responsible for the synthesis of all RNAs. The archaeal RNAP harbors homologues of all eukaryotic RNAP II subunits with two exceptions (RPB8 and RPB9). The 12 archaeal subunits are designated by letters and can be divided into three functional groups that are engaged in: (I) catalysis (A'/A", B'/B" or B); (II) assembly (L, N, D and P); and (III) auxiliary functions (F, E, H and K). The D subunit is equivalent to the RPB3 subunit of eukaryotic RNAP II. It contains two subdomains: one subdomain is similar the eukaryotic Rpb11/AC19/archaeal L subunit w
Probab=53.55 E-value=13 Score=17.37 Aligned_cols=71 Identities=30% Similarity=0.600 Sum_probs=44.7
Q ss_pred CEECCCCHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEHHHCCCCCCCHHHCCCCEEECCC---CCCCCCCCHHHHCCCHH
Q ss_conf 213452232533088321012245447335778885055558688723337831030367---73567576877332999
Q gi|254780861|r 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP---NFEFATETRQELYYDKE 139 (163)
Q Consensus 63 Ci~C~~C~~~CP~~aI~i~~~~~~~~~~~~~~~~~id~~~Ci~Cg~Cv~vCP~~AI~~~~---~~e~a~~~r~~l~~~k~ 139 (163)
+-+...++..||.+.+.++..... .-+...|.+|..|.+.|..++|.++. .|.+...+ .-.++++
T Consensus 171 ~~~~~~~~~~~p~~v~~~~~~~~~----------v~~~~~~~~~~~~~~~~~~~~I~~~~~~d~F~F~VES--~G~l~p~ 238 (259)
T cd07030 171 CDGCGKCVEECPRGVLELEEGKVV----------VEDLEDCSLCKLCERACDAGAIRVGWDEDRFIFEVES--DGSLPPK 238 (259)
T ss_pred CHHHHHHHHHCCCCCCCCCCCCCE----------ECCCCCCCHHHHHHHHCCCCCEEEEEECCEEEEEEEE--CCCCCHH
T ss_conf 157788776575442123457530----------1354212077899864246834898508979999990--3872999
Q ss_pred HHHHHH
Q ss_conf 998848
Q gi|254780861|r 140 RLLNNG 145 (163)
Q Consensus 140 ~Ll~~g 145 (163)
.++..+
T Consensus 239 ~iv~~A 244 (259)
T cd07030 239 EILLEA 244 (259)
T ss_pred HHHHHH
T ss_conf 999999
No 244
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=50.46 E-value=6.1 Score=19.47 Aligned_cols=18 Identities=33% Similarity=0.911 Sum_probs=15.3
Q ss_pred CCCCEECC--CCHHHHHHCC
Q ss_conf 74221345--2232533088
Q gi|254780861|r 60 EERCIACK--LCEAICPAQA 77 (163)
Q Consensus 60 ~ekCi~C~--~C~~~CP~~a 77 (163)
.++|+.|. .|...||++.
T Consensus 336 A~RCl~C~~p~C~~gCPv~i 355 (760)
T PRK12778 336 AQRCLDCANPGCMNGCPVGI 355 (760)
T ss_pred HHHHHCCCCCCCCCCCCCCC
T ss_conf 98975799985454899999
No 245
>COG1313 PflX Uncharacterized Fe-S protein PflX, homolog of pyruvate formate lyase activating proteins [General function prediction only]
Probab=46.84 E-value=15 Score=16.98 Aligned_cols=37 Identities=11% Similarity=-0.072 Sum_probs=29.9
Q ss_pred CCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 77356757687733299999884899999998507745
Q gi|254780861|r 122 PNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTD 159 (163)
Q Consensus 122 ~~~e~a~~~r~~l~~~k~~Ll~~g~~~~~~~~~~~~~d 159 (163)
++|+.|... .+..++.++|...-+.-+...|++++.=
T Consensus 136 QNwdISq~~-~g~~v~~e~La~i~~~~~~~GakNvN~V 172 (335)
T COG1313 136 QNWDISQFG-IGKEVTPEDLAEIILELRRHGAKNVNFV 172 (335)
T ss_pred CCCCCCCCC-CCEEECHHHHHHHHHHHHHHCCCCEEEC
T ss_conf 576523367-8807569999999999998257621005
No 246
>KOG2282 consensus
Probab=40.56 E-value=2.7 Score=21.62 Aligned_cols=62 Identities=23% Similarity=0.409 Sum_probs=31.4
Q ss_pred CCCCEECCCCHHHHHHCCCCCCCCCCCCCCCE-EEEEEEEEHHHCCCCCCCHHHCCCCEEECCC
Q ss_conf 74221345223253308832101224544733-5778885055558688723337831030367
Q gi|254780861|r 60 EERCIACKLCEAICPAQAITIESGPRCHDGTR-RTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 (163)
Q Consensus 60 ~ekCi~C~~C~~~CP~~aI~i~~~~~~~~~~~-~~~~~~id~~~Ci~Cg~Cv~vCP~~AI~~~~ 122 (163)
..+||.|..|++---.-|= ++.-...+.|.- ....|---+..--.-|.=++.||++||+..+
T Consensus 174 mtrciqctrcvrfaseiag-v~dlgttgrg~d~qigtyvek~f~selsgniidicpvgaltskp 236 (708)
T KOG2282 174 MTRCIQCTRCVRFASEIAG-VDDLGTTGRGNDMQIGTYVEKLFMSELSGNIIDICPVGALTSKP 236 (708)
T ss_pred HHHHHHHHHHHHHHHHHCC-CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCCCCCC
T ss_conf 9987757788888886438-75446666777631889999999876128746642345334686
No 247
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=39.62 E-value=10 Score=18.11 Aligned_cols=56 Identities=18% Similarity=0.369 Sum_probs=25.7
Q ss_pred CCCCEECC-CCHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEHHHCCCCCCCHHHCCCC
Q ss_conf 74221345-2232533088321012245447335778885055558688723337831
Q gi|254780861|r 60 EERCIACK-LCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 (163)
Q Consensus 60 ~ekCi~C~-~C~~~CP~~aI~i~~~~~~~~~~~~~~~~~id~~~Ci~Cg~Cv~vCP~~ 116 (163)
-.+|..|+ -|...||..-.--++..-...|..... +..=...=.+...|-.+||.+
T Consensus 22 a~rCl~C~~~C~~~cp~~~~IP~~~~lv~~g~~~~a-~~~i~~tn~~p~~~gRvcp~~ 78 (457)
T COG0493 22 AARCLDCGDPCITGCPVHNDIPEPIGLVREGVDHEA-IKLIHKTNNLPAITGRVCPLG 78 (457)
T ss_pred HHHHHCCCCHHHHCCCCCCCCCCHHHHHHCCCCHHH-HHHHHHHCCCCCCCCCCCCCC
T ss_conf 999872995354078787657778888764882899-999986088743106306899
No 248
>COG1798 DPH5 Diphthamide biosynthesis methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=36.14 E-value=32 Score=15.07 Aligned_cols=90 Identities=21% Similarity=0.255 Sum_probs=46.4
Q ss_pred HHCCCCCCCCCCCCCCCCCC--------HHCCCEEEEEECCCCCCCEECCCCHHHHHHCCCCC--CCCCCCCCCCEEEEE
Q ss_conf 84069852257875775680--------00572378740588742213452232533088321--012245447335778
Q gi|254780861|r 26 YFFKAKTTINYPFEKGSTSP--------RFRGEHALRRYPNGEERCIACKLCEAICPAQAITI--ESGPRCHDGTRRTVR 95 (163)
Q Consensus 26 ~~~~~~~T~~YP~e~~~~~~--------rfRG~~~l~~~~~~~ekCi~C~~C~~~CP~~aI~i--~~~~~~~~~~~~~~~ 95 (163)
+=|++++|+.||.+...+.. +-||.|.+...+-.+++ ...=+++|... +.+++...|-
T Consensus 127 YkFG~~vTip~~~~~~~p~s~yd~Ik~N~~~GLHTl~lLDi~~~~-------r~Mt~~ea~~~LLe~e~~~~~~~----- 194 (260)
T COG1798 127 YKFGKTVTLPFPSENFFPTSPYDVIKENLERGLHTLVLLDIKEDE-------RYMTANEALELLLEAEERRGRGV----- 194 (260)
T ss_pred ECCCCCEEECCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCC-------CCCCHHHHHHHHHHHHHHHCCCC-----
T ss_conf 324894696242368677858889987664586404899852665-------50489999999999999855787-----
Q ss_pred EEEEHHHCCCCCCCHHHCCCCEEECCCCCCCCCCC
Q ss_conf 88505555868872333783103036773567576
Q gi|254780861|r 96 YDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130 (163)
Q Consensus 96 ~~id~~~Ci~Cg~Cv~vCP~~AI~~~~~~e~a~~~ 130 (163)
+..| =.-|..|-.-+|...|..+..-+++.++
T Consensus 195 ~~~d---~~~vvvaR~Gs~~~~v~ag~l~~l~~~D 226 (260)
T COG1798 195 LTED---TLAVVVARAGSGDEVVRAGTLEELADED 226 (260)
T ss_pred CCCC---CEEEEEEECCCCCCEEEECHHHHHHHCC
T ss_conf 6888---6179999437998538823188986443
No 249
>TIGR01318 gltD_gamma_fam glutamate synthase, small subunit; InterPro: IPR006006 One pathway for the assimilation of ammonia and glutamate biosynthesis involves glutamate synthase (1.4.1.13 from EC) which transfers the amide group of glutamine to 2-oxoglutarate to yield two molecules of glutamate. 2 L-glutamate + NADP^+ = L-glutamine + 2-oxoglutarate + NADPH + H^+. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including Escherichia coli. ; GO: 0016639 oxidoreductase activity acting on the CH-NH2 group of donors NAD or NADP as acceptor, 0006537 glutamate biosynthetic process.
Probab=36.11 E-value=13 Score=17.51 Aligned_cols=20 Identities=45% Similarity=1.056 Sum_probs=16.0
Q ss_pred CCCCCEECCC---CHHHHHH-CCC
Q ss_conf 8742213452---2325330-883
Q gi|254780861|r 59 GEERCIACKL---CEAICPA-QAI 78 (163)
Q Consensus 59 ~~ekCi~C~~---C~~~CP~-~aI 78 (163)
.-+||..|+- |.-.||. |+|
T Consensus 39 qAdRCL~CGn~pyCeWkCPvHN~I 62 (480)
T TIGR01318 39 QADRCLKCGNKPYCEWKCPVHNAI 62 (480)
T ss_pred HHCCCHHCCCCCCCCCCCCCCCCC
T ss_conf 410121016888854548866672
No 250
>pfam12225 MTHFR_C Methylene-tetrahydrofolate reductase C terminal. This family is found in bacteria and archaea, and is approximately 100 amino acids in length. There is a conserved NGPCGG sequence motif. This family is the C terminal of methylene-tetrahydrofolate reductase. This protein reduces FAD using the reducing equivalents from reduced FAD, subsequently reduces tetrahydrofolate. The C terminal of MTHFR contains the FAD binding site and is the catalytic portion of the enzyme.
Probab=35.10 E-value=14 Score=17.27 Aligned_cols=19 Identities=42% Similarity=1.036 Sum_probs=13.6
Q ss_pred CCCCEECCCCHH-----HHH-HCCC
Q ss_conf 742213452232-----533-0883
Q gi|254780861|r 60 EERCIACKLCEA-----ICP-AQAI 78 (163)
Q Consensus 60 ~ekCi~C~~C~~-----~CP-~~aI 78 (163)
++.|-+||.|+. +|| ..|-
T Consensus 20 ~~~C~~CG~C~L~~Tg~iCP~~~Cp 44 (98)
T pfam12225 20 LERCKSCGQCRLGETGGICPVSRCP 44 (98)
T ss_pred HHHCCCCCCEECHHCCCCCCCCCCC
T ss_conf 4408867882032007527554385
No 251
>PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated
Probab=33.86 E-value=23 Score=15.89 Aligned_cols=52 Identities=25% Similarity=0.455 Sum_probs=37.5
Q ss_pred CCCCCEECCCCHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEHHHCCCCCCCHH-HCCCCE
Q ss_conf 87422134522325330883210122454473357788850555586887233-378310
Q gi|254780861|r 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE-ACPVDA 117 (163)
Q Consensus 59 ~~ekCi~C~~C~~~CP~~aI~i~~~~~~~~~~~~~~~~~id~~~Ci~Cg~Cv~-vCP~~A 117 (163)
+++-|-|||-|-.. ++|+++++.+ .+-|.|. .||.+.|--=-.|++ .||.-.
T Consensus 638 N~~VCEGCGDC~~~--SNClsv~P~e-Te~GrKr----~IdQssCNkD~SCl~GfCPSFV 690 (1155)
T PRK09193 638 NEAVCEGCGDCSVK--SNCLSVEPVE-TEFGRKR----RIDQSSCNKDFSCVKGFCPSFV 690 (1155)
T ss_pred CHHHCCCCCCCCCC--CCCCEEEECC-CCCCCCE----EECHHHCCCCCHHHCCCCCCCE
T ss_conf 67774856344454--6876001026-7665341----5232121567423228898737
No 252
>PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=32.91 E-value=22 Score=16.11 Aligned_cols=52 Identities=21% Similarity=0.410 Sum_probs=37.4
Q ss_pred CCCCCEECCCCHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEHHHCCCCCCCHH-HCCCCE
Q ss_conf 87422134522325330883210122454473357788850555586887233-378310
Q gi|254780861|r 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE-ACPVDA 117 (163)
Q Consensus 59 ~~ekCi~C~~C~~~CP~~aI~i~~~~~~~~~~~~~~~~~id~~~Ci~Cg~Cv~-vCP~~A 117 (163)
+++-|-|||-|-.. ++|+++++.+ ++-|.|. .||.+.|--=-.|++ .||.-.
T Consensus 655 N~~VCEGCGDC~~~--SNClSV~P~e-Te~GrKr----~IdQSsCNkD~SCl~GfCPSFV 707 (1186)
T PRK13029 655 NELVCEGCGDCSVQ--SNCLAVQPVE-TEFGRKR----KINQSSCNKDFSCVKGFCPSFV 707 (1186)
T ss_pred CHHHCCCCCCCCCC--CCCCEEEECC-CCCCCCE----EECCCCCCCCCHHHCCCCCCCE
T ss_conf 68664877432355--6864133226-8765121----3041225667423228898737
No 253
>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=31.78 E-value=24 Score=15.83 Aligned_cols=51 Identities=24% Similarity=0.437 Sum_probs=36.9
Q ss_pred CCCCCEECCCCHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEHHHCCCCCCCHH-HCCCC
Q ss_conf 87422134522325330883210122454473357788850555586887233-37831
Q gi|254780861|r 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE-ACPVD 116 (163)
Q Consensus 59 ~~ekCi~C~~C~~~CP~~aI~i~~~~~~~~~~~~~~~~~id~~~Ci~Cg~Cv~-vCP~~ 116 (163)
++.-|-|||-|-.. ++|+++++.+ .+-|.|. .||.+.|--=-.|++ .||.-
T Consensus 638 N~~VCEGCGDC~~~--SNClsv~P~e-T~~GrKr----~IdQssCNkD~SCl~GfCPSF 689 (1168)
T PRK13030 638 NDAVCEGCGDCGVQ--SNCLSVEPLE-TPLGRKR----RIDQSSCNKDFSCVNGFCPSF 689 (1168)
T ss_pred CHHHCCCCCCCCCC--CCCCEEEECC-CCCCCCE----EECCCCCCCCCHHHCCCCCCC
T ss_conf 67765855110153--6874145346-7766231----314011466742322889873
No 254
>pfam07227 DUF1423 Protein of unknown function (DUF1423). This family represents a conserved region approximately 500 residues long within a number of Arabidopsis thaliana proteins of unknown function.
Probab=25.80 E-value=39 Score=14.50 Aligned_cols=23 Identities=17% Similarity=0.212 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 99999999999984069852257
Q gi|254780861|r 14 KEFVGAFFLCLRYFFKAKTTINY 36 (163)
Q Consensus 14 ~~~~~gl~~t~k~~~~~~~T~~Y 36 (163)
.+||.++++.+..|..+.+.+.-
T Consensus 66 LEILVAikTGi~~FL~~~~~i~~ 88 (446)
T pfam07227 66 LEILVAIKTGIQDFLHPSNSISQ 88 (446)
T ss_pred HHHHHHHHHCCHHHHCCCCCCCH
T ss_conf 65435554173988188888652
No 255
>pfam06902 DUF1271 Protein of unknown function (DUF1271). This family consists of a number of hypothetical bacterial proteins of around 70 residues in length. Members of this family contain three highly conserved cysteine residues. The function of this family is unknown.
Probab=24.73 E-value=28 Score=15.40 Aligned_cols=16 Identities=25% Similarity=0.389 Sum_probs=13.1
Q ss_pred CCCCCEECCCCHHHHH
Q ss_conf 8742213452232533
Q gi|254780861|r 59 GEERCIACKLCEAICP 74 (163)
Q Consensus 59 ~~ekCi~C~~C~~~CP 74 (163)
+.++|++=+.|++.=|
T Consensus 11 ~~~~C~hag~Cv~~~p 26 (64)
T pfam06902 11 NPGLCIHAGNCVRGLP 26 (64)
T ss_pred CCCCCCCHHHHHHCCC
T ss_conf 7772456658873791
No 256
>pfam03892 NapB Nitrate reductase cytochrome c-type subunit (NapB). The napB gene encodes a dihaem cytochrome c, the small subunit of a heterodimeric periplasmic nitrate reductase.
Probab=22.91 E-value=54 Score=13.66 Aligned_cols=47 Identities=19% Similarity=0.328 Sum_probs=34.9
Q ss_pred CCCCCCCCCCCCCCCHHCCCEEEEEECCCCCCCEECCCCHHHHHHCCCCCC
Q ss_conf 852257875775680005723787405887422134522325330883210
Q gi|254780861|r 31 KTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE 81 (163)
Q Consensus 31 ~~T~~YP~e~~~~~~rfRG~~~l~~~~~~~ekCi~C~~C~~~CP~~aI~i~ 81 (163)
++...|+.++.-+|..-+|.+. .. +..+|.+|-.=+.+=-.+|..|-
T Consensus 45 ~~~r~y~~qPPlIPH~i~gy~I-~~---~~N~Cl~CH~~~~a~~~~A~~is 91 (134)
T pfam03892 45 RIERNYPNQPPLIPHSIDGYQI-TL---NANKCLSCHSRENAKESGATMIS 91 (134)
T ss_pred CCCCCCCCCCCCCCCCCCCCEE-CC---CCCCCCCCCCHHHHHHCCCCCCC
T ss_conf 5034667798978833678512-27---78706458797568561898588
No 257
>COG3043 NapB Nitrate reductase cytochrome c-type subunit [Energy production and conversion]
Probab=22.69 E-value=50 Score=13.87 Aligned_cols=44 Identities=20% Similarity=0.382 Sum_probs=31.5
Q ss_pred CCCCCCCCCCCCHHCCCEEEEEECCCCCCCEECCCCHHHHHHCCCCCC
Q ss_conf 257875775680005723787405887422134522325330883210
Q gi|254780861|r 34 INYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE 81 (163)
Q Consensus 34 ~~YP~e~~~~~~rfRG~~~l~~~~~~~ekCi~C~~C~~~CP~~aI~i~ 81 (163)
..||+++.-+|...+|..+- . +..+|..|-.=+.+=-++|-.|.
T Consensus 64 ~nYvnQPP~IPHsi~~Yqvt-k---n~N~CLsCH~~e~s~~tGAt~IS 107 (155)
T COG3043 64 LNYVNQPPMIPHSIEGYQVT-K---NTNRCLSCHSVENSRTTGATRIS 107 (155)
T ss_pred HCCCCCCCCCCCCCCCCEEE-C---CCCHHHHCCCHHHHHHCCCCCCC
T ss_conf 42687999776334671542-2---53440213688778661897567
No 258
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=22.06 E-value=37 Score=14.68 Aligned_cols=56 Identities=23% Similarity=0.380 Sum_probs=27.0
Q ss_pred CCCCEECCC--CHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEHHHCCCCCCCHHHCCCC
Q ss_conf 742213452--232533088321012245447335778885055558688723337831
Q gi|254780861|r 60 EERCIACKL--CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 (163)
Q Consensus 60 ~ekCi~C~~--C~~~CP~~aI~i~~~~~~~~~~~~~~~~~id~~~Ci~Cg~Cv~vCP~~ 116 (163)
.++|+.|.. |+..||++.=--..-.....|.- ...+.+-...=.+=+.|-.|||.+
T Consensus 330 A~RCLqCk~p~Cv~GCPV~idIP~FI~~I~~gdf-~~A~~iI~e~n~LPaICGRVCPQE 387 (993)
T PRK12775 330 AERCIQCIKPTCIAGCPVGIDIPVFIRNILVRDF-DAALETIYESSIFPSICGRVCPQE 387 (993)
T ss_pred HHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCH-HHHHHHHHHCCCCHHHHCCCCCCC
T ss_conf 9885089899767799898875999999973889-999999975388517653658950
No 259
>COG5446 Predicted integral membrane protein [Function unknown]
Probab=21.80 E-value=57 Score=13.52 Aligned_cols=29 Identities=24% Similarity=0.237 Sum_probs=24.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 93689999999999999999999998406
Q gi|254780861|r 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFK 29 (163)
Q Consensus 1 m~~~~~~~~~~~~~~~~~gl~~t~k~~~~ 29 (163)
|++|++++-.--+.+++.|+.+|+-+.+-
T Consensus 1 m~~frnivftA~~aGllag~~l~~mQa~~ 29 (233)
T COG5446 1 MRMFRNIVFTAGFAGLLAGLLLTLMQALW 29 (233)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 90899999999999999999999999971
No 260
>KOG2415 consensus
Probab=20.93 E-value=54 Score=13.64 Aligned_cols=51 Identities=24% Similarity=0.321 Sum_probs=36.8
Q ss_pred CCCHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEHHHCCCCCCCHHHCCCCEEECC
Q ss_conf 5223253308832101224544733577888505555868872333783103036
Q gi|254780861|r 67 KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 (163)
Q Consensus 67 ~~C~~~CP~~aI~i~~~~~~~~~~~~~~~~~id~~~Ci~Cg~Cv~vCP~~AI~~~ 121 (163)
+.=.+-||++.-.....+....+ .+++||...||-|-.|---=|..-|...
T Consensus 558 gpE~rfCPAgVYEyV~dE~~~~~----krlqINaQNCiHCKtCDIKdP~QnI~W~ 608 (621)
T KOG2415 558 GPESRFCPAGVYEYVPDEAGPVG----KRLQINAQNCIHCKTCDIKDPKQNINWV 608 (621)
T ss_pred CHHHCCCCCCCEEECCCCCCCCC----CEEEECCCCCEECCCCCCCCCCCCCEEE
T ss_conf 80432577320464544458876----2578725363003325665722386066
No 261
>TIGR02484 CitB CitB domain protein; InterPro: IPR012830 This entry identifies proteins that are decribed as citrate utilization protein B, restricted to the proteobacteria. CitB has been identified in Salmonella and Escherichia coli as the signal transduction component of a two-component system for citrate in which CitA acts as a citrate transporter. This domain is also a C-terminal domain in the Rhodobacter capsulatus CobZ gene, which in most other species exists as the separate CitB gene adjacent to CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterised precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate..
Probab=20.23 E-value=26 Score=15.62 Aligned_cols=43 Identities=28% Similarity=0.606 Sum_probs=28.2
Q ss_pred CCEECCCCHHHHHH-CCCCCCCCCCCCCCCEEEEEEEEEH--HHCCCCCCCHHHC
Q ss_conf 22134522325330-8832101224544733577888505--5558688723337
Q gi|254780861|r 62 RCIACKLCEAICPA-QAITIESGPRCHDGTRRTVRYDIDM--IKCIYCGLCQEAC 113 (163)
Q Consensus 62 kCi~C~~C~~~CP~-~aI~i~~~~~~~~~~~~~~~~~id~--~~Ci~Cg~Cv~vC 113 (163)
-|..|+=|.--|++ .|++=. +..+.=|+.+ ..|=.|+-|=..|
T Consensus 15 lC~~C~YC~GLC~VFpA~~rr---------~~l~~GD~~~LAnLCH~C~aC~HaC 60 (392)
T TIGR02484 15 LCNACGYCDGLCAVFPAAERR---------PLLTVGDLAHLANLCHHCQACWHAC 60 (392)
T ss_pred HCCCCCCCCCCCCCCHHHCCC---------CCCCHHHHHHHHHHCCCCCCCCCCC
T ss_conf 626577767766211330578---------6776424999986414667645324
Done!