RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780861|ref|YP_003065274.1| NADH dehydrogenase subunit I [Candidatus Liberibacter asiaticus str. psy62] (163 letters) >3i9v_9 NADH-quinone oxidoreductase subunit 9; electron transport, respiratory chain, 4Fe- 4S, cell membrane, flavoprotein, FMN, iron; HET: FMN; 3.10A {Thermus thermophilus HB8} PDB: 2fug_9* 3iam_9* 3ias_9* Length = 182 Score = 138 bits (349), Expect = 4e-34 Identities = 59/152 (38%), Positives = 81/152 (53%), Gaps = 7/152 (4%) Query: 11 LFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCE 70 + LK + + L+Y F T+ YP + PRF G H L R+PNG E+CI C LC Sbjct: 1 MTLKALAQSLGITLKYLFSKPVTVPYPDAPVALKPRFHGRHVLTRHPNGLEKCIGCSLCA 60 Query: 71 AICPAQAITIESGP-----RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 A CPA AI +E G R Y+I+M++CI+CGLC+EACP AIV G +FE Sbjct: 61 AACPAYAIYVEPAENDPENPVSAGERYAKVYEINMLRCIFCGLCEEACPTGAIVLGYDFE 120 Query: 126 FATETRQELYYDKERLLNN--GDRWESEIVRN 155 A +L Y KE +L + G + + + Sbjct: 121 MADYEYSDLVYGKEDMLVDVVGTKPQRREAKR 152 >1jb0_C Photosystem I iron-sulfur center; membrane protein, multiprotein-pigment complex, photosynthesis; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: d.58.1.2 PDB: 1k0t_A 2wsc_C* 2wse_C* 2wsf_C* 2o01_C* Length = 80 Score = 60.2 bits (145), Expect = 2e-10 Identities = 15/68 (22%), Positives = 24/68 (35%), Gaps = 7/68 (10%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 H ++ Y + CI C C CP + + + C+ C C+ Sbjct: 2 HTVKIY----DTCIGCTQCVRACPTDVLEMVPWD---GCKAGQIASSPRTEDCVGCKRCE 54 Query: 111 EACPVDAI 118 ACP D + Sbjct: 55 TACPTDFL 62 Score = 31.3 bits (70), Expect = 0.10 Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 1/34 (2%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRT 93 E C+ CK CE CP ++I + TR Sbjct: 44 TEDCVGCKRCETACPTDFLSIRVYLG-AETTRSM 76 Score = 29.8 bits (66), Expect = 0.35 Identities = 8/18 (44%), Positives = 9/18 (50%) Query: 102 KCIYCGLCQEACPVDAIV 119 CI C C ACP D + Sbjct: 9 TCIGCTQCVRACPTDVLE 26 >2fdn_A Ferredoxin; electron transport, iron-sulfur, 4Fe-4S; 0.94A {Clostridium acidurici} SCOP: d.58.1.1 PDB: 1fdn_A 1fca_A 1clf_A 1dur_A Length = 55 Score = 58.4 bits (141), Expect = 6e-10 Identities = 25/61 (40%), Positives = 28/61 (45%), Gaps = 11/61 (18%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 E CI+C CE CP AI+ RY ID CI CG C CPVDA V Sbjct: 5 NEACISCGACEPECPVNAISSGD-----------DRYVIDADTCIDCGACAGVCPVDAPV 53 Query: 120 E 120 + Sbjct: 54 Q 54 Score = 31.9 bits (72), Expect = 0.066 Identities = 11/22 (50%), Positives = 14/22 (63%) Query: 102 KCIYCGLCQEACPVDAIVEGPN 123 CI CG C+ CPV+AI G + Sbjct: 7 ACISCGACEPECPVNAISSGDD 28 >3eun_A Ferredoxin; electron transport, [4Fe-4S] cluster, 4Fe-4S, iron, iron-sulfur, metal-binding, transport; 1.05A {Allochromatium vinosum} PDB: 1blu_A 3exy_A Length = 82 Score = 56.0 bits (134), Expect = 4e-09 Identities = 27/86 (31%), Positives = 38/86 (44%), Gaps = 8/86 (9%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 + CI C +CE CP AI+ + + T + + C E CPVDAI+ Sbjct: 5 TDECINCDVCEPECPNGAISQGDETYVIEPSLCT-----ECVGHYETSQCVEVCPVDAII 59 Query: 120 EGPNFEFATETRQELYYDKERLLNNG 145 + P+ E ET EL ER+ G Sbjct: 60 KDPSHE---ETEDELRAKYERITGEG 82 >1xer_A Ferredoxin; electron transport, iron-sulfur, duplication; 2.00A {Sulfolobus tokodaii str} SCOP: d.58.1.3 PDB: 2vkr_A Length = 103 Score = 54.8 bits (131), Expect = 8e-09 Identities = 16/59 (27%), Positives = 22/59 (37%), Gaps = 2/59 (3%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + CIA C CP P ++ ++ CI+C C CPV AI Sbjct: 42 FDLCIADGSCINACPVNVFQWYDTPGHPASEKKA--DPVNEQACIFCMACVNVCPVAAI 98 Score = 34.0 bits (77), Expect = 0.015 Identities = 9/21 (42%), Positives = 11/21 (52%) Query: 98 IDMIKCIYCGLCQEACPVDAI 118 +D CI G C ACPV+ Sbjct: 40 VDFDLCIADGSCINACPVNVF 60 Score = 29.0 bits (64), Expect = 0.52 Identities = 10/26 (38%), Positives = 14/26 (53%) Query: 56 YPNGEERCIACKLCEAICPAQAITIE 81 P E+ CI C C +CP AI ++ Sbjct: 76 DPVNEQACIFCMACVNVCPVAAIDVK 101 >3gyx_B Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas} Length = 166 Score = 53.9 bits (129), Expect = 1e-08 Identities = 17/73 (23%), Positives = 26/73 (35%), Gaps = 13/73 (17%) Query: 60 EERCIACK-----LCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 +C CK C ICP + ++ ++ + C C C + CP Sbjct: 6 PSKCDGCKGGEKTACMYICPNDLMILDPEEM--------KAFNQEPEACWECYSCIKICP 57 Query: 115 VDAIVEGPNFEFA 127 AI P +FA Sbjct: 58 QGAITARPYADFA 70 Score = 31.6 bits (71), Expect = 0.092 Identities = 9/31 (29%), Positives = 12/31 (38%), Gaps = 5/31 (16%) Query: 98 IDMIKCIYC-----GLCQEACPVDAIVEGPN 123 +D KC C C CP D ++ P Sbjct: 4 VDPSKCDGCKGGEKTACMYICPNDLMILDPE 34 >2zvs_A Uncharacterized ferredoxin-like protein YFHL; electron transport, [4Fe-4S] clusters, iron- sulfur clusters, reduction potential; 1.65A {Escherichia coli k-12} Length = 85 Score = 54.0 bits (129), Expect = 2e-08 Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 22/95 (23%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYC------GLCQEAC 113 ++CI C +CE CP +AI++ Y+I+ KC C CQ+ C Sbjct: 5 TKKCINCDMCEPECPNEAISMG-----------DHIYEINSDKCTECVGHYETPTCQKVC 53 Query: 114 PVDA-IVEGPNFEFATETRQELYYDKERLLNNGDR 147 P+ IV+ P ET ++L +DK L+++ D+ Sbjct: 54 PIPNTIVKDPAH---VETEEQL-WDKFVLMHHADK 84 >1rgv_A Ferredoxin; electron transport; 2.90A {Thauera aromatica K172} SCOP: d.58.1.1 Length = 80 Score = 53.3 bits (127), Expect = 2e-08 Identities = 28/87 (32%), Positives = 36/87 (41%), Gaps = 20/87 (22%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYC------GLCQEACP 114 + C AC C CP +AIT Y ID KC C C+ CP Sbjct: 6 DDCTACDACVEECPNEAIT-----------PGDPIYVIDPTKCSECVGAFDEPQCRLVCP 54 Query: 115 VDAIVEGPNFEFATETRQELYYDKERL 141 D I + P++ ETR+EL +RL Sbjct: 55 ADCIPDNPDYR---ETREELQEKYDRL 78 >2fgo_A Ferredoxin; allochromatium vinosum, [4Fe-4S] cluster, reduction potential, iron binding protein electron transport; 1.32A {Pseudomonas aeruginosa} Length = 82 Score = 52.5 bits (125), Expect = 4e-08 Identities = 23/87 (26%), Positives = 33/87 (37%), Gaps = 20/87 (22%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYC------GLCQEACP 114 + CI C +CE CP AI+ + Y ID C C CQ+ CP Sbjct: 6 DDCINCDVCEPECPNGAIS-----------QGEEIYVIDPNLCTECVGHYDEPQCQQVCP 54 Query: 115 VDAIVEGPNFEFATETRQELYYDKERL 141 VD I E++ +L ++ Sbjct: 55 VDCIPLDDANV---ESKDQLMEKYRKI 78 >1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* Length = 1025 Score = 49.7 bits (118), Expect = 3e-07 Identities = 19/63 (30%), Positives = 20/63 (31%), Gaps = 14/63 (22%) Query: 60 EERCIACKLCEAIC---PAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV- 115 EE CI C C C QAI D C C LC CP+ Sbjct: 950 EEMCINCGKCYMTCNDSGYQAIQF-------DPETH---LPTVTDTCTGCTLCLSVCPII 999 Query: 116 DAI 118 D I Sbjct: 1000 DCI 1002 Score = 31.2 bits (70), Expect = 0.12 Identities = 10/39 (25%), Positives = 16/39 (41%), Gaps = 1/39 (2%) Query: 54 RRYPNGEERCIACKLCEAICPAQ-AITIESGPRCHDGTR 91 P + C C LC ++CP I + S ++ R Sbjct: 977 THLPTVTDTCTGCTLCLSVCPIIDCIRMVSRTTPYEPKR 1015 Score = 26.9 bits (59), Expect = 2.4 Identities = 6/19 (31%), Positives = 10/19 (52%), Gaps = 2/19 (10%) Query: 103 CIYCGL--CQEACPVDAIV 119 C+ C CQ++CP + Sbjct: 79 CLKCADAPCQKSCPTHLDI 97 Score = 26.5 bits (58), Expect = 2.8 Identities = 10/24 (41%), Positives = 10/24 (41%), Gaps = 3/24 (12%) Query: 98 IDMIKCIYCGLCQEAC---PVDAI 118 ID CI CG C C AI Sbjct: 948 IDEEMCINCGKCYMTCNDSGYQAI 971 >1dwl_A Ferredoxin I; electron transfer, model, heteronuclear docking; HET: HEC; NMR {Desulfovibrio desulfuricans} SCOP: i.4.1.1 Length = 59 Score = 48.6 bits (115), Expect = 6e-07 Identities = 14/59 (23%), Positives = 20/59 (33%), Gaps = 8/59 (13%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E CI C+ C +CP I+ + +ACPV+AI Sbjct: 6 HEECIGCESCVELCPEVFAMIDGEEK--------AMVTAPDSTAECAQDAIDACPVEAI 56 Score = 29.8 bits (66), Expect = 0.28 Identities = 9/23 (39%), Positives = 11/23 (47%) Query: 98 IDMIKCIYCGLCQEACPVDAIVE 120 ID +CI C C E CP + Sbjct: 4 IDHEECIGCESCVELCPEVFAMI 26 Score = 29.4 bits (65), Expect = 0.36 Identities = 5/32 (15%), Positives = 9/32 (28%) Query: 50 EHALRRYPNGEERCIACKLCEAICPAQAITIE 81 + + CP +AI+ E Sbjct: 28 GEEKAMVTAPDSTAECAQDAIDACPVEAISKE 59 >1f2g_A Ferredoxin II; electron transport, FDII desulfovibrio gigas; NMR {Desulfovibrio gigas} SCOP: d.58.1.4 PDB: 1fxd_A Length = 58 Score = 47.5 bits (112), Expect = 1e-06 Identities = 14/61 (22%), Positives = 21/61 (34%), Gaps = 8/61 (13%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 + C+AC+ C ICP E G + ++CP +AIV Sbjct: 5 NDDCMACEACVEICPDVFEMNEEGDK--------AVVINPDSDLDCVEEAIDSCPAEAIV 56 Query: 120 E 120 Sbjct: 57 R 57 Score = 25.2 bits (54), Expect = 6.9 Identities = 6/26 (23%), Positives = 9/26 (34%) Query: 54 RRYPNGEERCIACKLCEAICPAQAIT 79 N + + CPA+AI Sbjct: 31 AVVINPDSDLDCVEEAIDSCPAEAIV 56 >1hfe_L Protein (Fe-only hydrogenase (E.C.1.18.99.1) (larger subunit)); X-RAY crystallography, hydrogene metabolism, periplasm; 1.60A {Desulfovibrio vulgaris subsp} SCOP: c.96.1.1 d.58.1.5 PDB: 1e08_A* 1gx7_A* Length = 421 Score = 47.6 bits (113), Expect = 1e-06 Identities = 23/67 (34%), Positives = 27/67 (40%), Gaps = 11/67 (16%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI-KCIYCGLCQEACPVDAI 118 E +CI C C CP AI E G I I CI CG C CP +AI Sbjct: 32 EAKCIGCDTCSQYCPTAAIFGEMGEPHS----------IPHIEACINCGQCLTHCPENAI 81 Query: 119 VEGPNFE 125 E ++ Sbjct: 82 YEAQSWV 88 Score = 32.2 bits (73), Expect = 0.053 Identities = 11/24 (45%), Positives = 12/24 (50%) Query: 98 IDMIKCIYCGLCQEACPVDAIVEG 121 ID KCI C C + CP AI Sbjct: 30 IDEAKCIGCDTCSQYCPTAAIFGE 53 >1sj1_A Ferredoxin; thermostability, iron-sulfur cluster, hexammine cobalt(III), electron transport; HET: NCO; 1.50A {Pyrococcus furiosus} SCOP: d.58.1.4 PDB: 1siz_A* 2z8q_A Length = 66 Score = 47.5 bits (112), Expect = 1e-06 Identities = 15/59 (25%), Positives = 22/59 (37%), Gaps = 5/59 (8%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++ CI +C ++CP + G + V D EACPV AI Sbjct: 8 QDTCIGDAICASLCPDVFEMNDEGKA-----QPKVEVIEDEELYNCAKEAMEACPVSAI 61 Score = 30.9 bits (69), Expect = 0.15 Identities = 6/26 (23%), Positives = 10/26 (38%) Query: 95 RYDIDMIKCIYCGLCQEACPVDAIVE 120 + +D CI +C CP + Sbjct: 3 KVSVDQDTCIGDAICASLCPDVFEMN 28 Score = 30.1 bits (67), Expect = 0.26 Identities = 10/31 (32%), Positives = 10/31 (32%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIE 81 EE K CP AITIE Sbjct: 34 QPKVEVIEDEELYNCAKEAMEACPVSAITIE 64 >1iqz_A Ferredoxin; iron-sulfer protein, ultlahigh resolution analysis, geometry of [4Fe-4S] cluster, electron transport; 0.92A {Bacillus thermoproteolyticus} SCOP: d.58.1.4 PDB: 1ir0_A 1wtf_A* Length = 81 Score = 45.7 bits (108), Expect = 4e-06 Identities = 16/59 (27%), Positives = 20/59 (33%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +E CIAC C A P E G ++ I E CP D+I Sbjct: 8 KETCIACGACGAAAPDIYDYDEDGIAYVTLDDNQGIVEVPDILIDDMMDAFEGCPTDSI 66 Score = 30.0 bits (67), Expect = 0.29 Identities = 4/40 (10%), Positives = 8/40 (20%) Query: 45 PRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGP 84 + + CP +I + P Sbjct: 33 AYVTLDDNQGIVEVPDILIDDMMDAFEGCPTDSIKVADEP 72 Score = 27.6 bits (61), Expect = 1.3 Identities = 8/17 (47%), Positives = 9/17 (52%) Query: 98 IDMIKCIYCGLCQEACP 114 +D CI CG C A P Sbjct: 6 VDKETCIACGACGAAAP 22 >1jnr_B Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: d.58.1.5 PDB: 1jnz_B* 2fja_B* 2fjb_B* 2fjd_B* 2fje_B* Length = 150 Score = 45.2 bits (106), Expect = 7e-06 Identities = 18/73 (24%), Positives = 28/73 (38%), Gaps = 13/73 (17%) Query: 60 EERCIACK-----LCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 E+C CK CE ICP +T++ Y+ + C C C + CP Sbjct: 7 PEKCDGCKALERTACEYICPNDLMTLDKEKMKA--------YNREPDMCWECYSCVKMCP 58 Query: 115 VDAIVEGPNFEFA 127 AI +++ Sbjct: 59 QGAIDVRGYVDYS 71 Score = 30.6 bits (68), Expect = 0.18 Identities = 8/42 (19%), Positives = 14/42 (33%), Gaps = 5/42 (11%) Query: 98 IDMIKCIYCG-----LCQEACPVDAIVEGPNFEFATETRQEL 134 ++ KC C C+ CP D + A ++ Sbjct: 5 VNPEKCDGCKALERTACEYICPNDLMTLDKEKMKAYNREPDM 46 >1h98_A Ferredoxin; electron transport, thermophilic, iron-sulfur, azotobacter, hydrogen bonds, stability, high resolution; 1.64A {Thermus aquaticus} SCOP: d.58.1.2 Length = 78 Score = 45.0 bits (106), Expect = 8e-06 Identities = 20/68 (29%), Positives = 27/68 (39%), Gaps = 13/68 (19%) Query: 60 EERCIACKL--CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 E CI K C +CP + I ++ I +CI CG C ACPV+A Sbjct: 5 CEPCIGVKDQSCVEVCPVECIYDGGD-----------QFYIHPEECIDCGACVPACPVNA 53 Query: 118 IVEGPNFE 125 I + Sbjct: 54 IYPEEDVP 61 >1q16_B Respiratory nitrate reductase 1 beta chain; membrane protein, electron-transfer, oxidoreductase; HET: FME MD1 HEM AGA 3PH; 1.90A {Escherichia coli} SCOP: d.58.1.5 PDB: 1r27_B* 1siw_B* 1y5i_B* 1y5l_B* 1y5n_B* 3ir5_B* 3ir6_B* 3ir7_B* 1y4z_B* Length = 512 Score = 44.3 bits (104), Expect = 1e-05 Identities = 21/90 (23%), Positives = 28/90 (31%), Gaps = 18/90 (20%) Query: 38 FEKGSTSPRFRG--EHALRRYPNGE-----ERCIACKL--CEAICPAQAITIESGPRCHD 88 F+K + F + ++ N C C C A CP+ AI Sbjct: 152 FDKLAKDKNFDNIQKAMYSQFENTFMMYLPRLCEHCLNPACVATCPSGAIY-------KR 204 Query: 89 GTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 V D D KC +C CP I Sbjct: 205 EEDGIVLIDQD--KCRGWRMCITGCPYKKI 232 Score = 40.9 bits (95), Expect = 1e-04 Identities = 11/61 (18%), Positives = 19/61 (31%), Gaps = 4/61 (6%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ++C ++C CP + I G + I+ +C E C Sbjct: 215 DKCRGWRMCITGCPYKKIYFNWK----SGKSEKCIFCYPRIEAGQPTVCSETCVGRIRYL 270 Query: 121 G 121 G Sbjct: 271 G 271 Score = 31.6 bits (71), Expect = 0.097 Identities = 6/21 (28%), Positives = 9/21 (42%) Query: 98 IDMIKCIYCGLCQEACPVDAI 118 +++ KCI C C C Sbjct: 11 LNLDKCIGCHTCSVTCKNVWT 31 Score = 26.2 bits (57), Expect = 3.7 Identities = 6/21 (28%), Positives = 9/21 (42%) Query: 61 ERCIACKLCEAICPAQAITIE 81 ++CI C C C + E Sbjct: 14 DKCIGCHTCSVTCKNVWTSRE 34 >1kqf_B FDH-N beta, formate dehydrogenase, nitrate-inducible, iron- sulfur subunit; oxidoreductase, selenium, selenocysteine, seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli} SCOP: d.58.1.5 f.23.22.1 PDB: 1kqg_B* Length = 294 Score = 43.7 bits (102), Expect = 2e-05 Identities = 19/79 (24%), Positives = 24/79 (30%), Gaps = 4/79 (5%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 CI C C A CP + D +D + C + CP AI G Sbjct: 132 NCIGCGYCIAGCPFNIPRLNKE----DNRVYKCTLCVDRVSVGQEPACVKTCPTGAIHFG 187 Query: 122 PNFEFATETRQELYYDKER 140 E Q + K R Sbjct: 188 TKKEMLELAEQRVAKLKAR 206 Score = 32.5 bits (73), Expect = 0.045 Identities = 14/73 (19%), Positives = 25/73 (34%), Gaps = 11/73 (15%) Query: 48 RGEHALRRYPNGEERCIACK--LCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105 ++ + ++ C+ C+ C CP+ + +G D CI Sbjct: 85 TEQNGKLEWLIRKDGCMHCEDPGCLKACPSAGAI----IQYANG-----IVDFQSENCIG 135 Query: 106 CGLCQEACPVDAI 118 CG C CP + Sbjct: 136 CGYCIAGCPFNIP 148 Score = 29.8 bits (66), Expect = 0.29 Identities = 9/16 (56%), Positives = 10/16 (62%) Query: 98 IDMIKCIYCGLCQEAC 113 ID+ CI C CQ AC Sbjct: 34 IDVSTCIGCKACQVAC 49 >2v2k_A Ferredoxin; iron, 3Fe-4S, 4Fe-4S, transport, iron-sulfur, mycobacterium tuberculosis, Fe-S cluster, metal-binding, electron transfer; 1.6A {Mycobacterium smegmatis} Length = 105 Score = 43.6 bits (102), Expect = 2e-05 Identities = 19/83 (22%), Positives = 27/83 (32%), Gaps = 17/83 (20%) Query: 60 EERCIACK--LCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 E C+ K C CP I + I +C+ CG C+ CPV+A Sbjct: 5 AEPCVDVKDKACIEECPVDCIYEGAR-----------MLYIHPDECVDCGACEPVCPVEA 53 Query: 118 IVEGPNFEFATETRQELYYDKER 140 I +E + Y Sbjct: 54 IY----YEDDVPDQWSSYAQANA 72 >2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A* Length = 1231 Score = 43.4 bits (102), Expect = 2e-05 Identities = 29/122 (23%), Positives = 46/122 (37%), Gaps = 33/122 (27%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI------------------T 79 F G++ RG A+ E CI C C +CP AI Sbjct: 664 FPLGTSQFEKRGV-AINVPQWVPENCIQCNQCAFVCPHSAILPVLAKEEELVGAPANFTA 722 Query: 80 IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV--DAIV----------EGPNFEFA 127 +E+ + G + ++ I+ + C+ CG C + CP A+V + PN E+A Sbjct: 723 LEAKGKELKGYKFRIQ--INTLDCMGCGNCADICPPKEKALVMQPLDTQRDAQVPNLEYA 780 Query: 128 TE 129 Sbjct: 781 AR 782 Score = 33.0 bits (75), Expect = 0.037 Identities = 18/127 (14%), Positives = 28/127 (22%), Gaps = 4/127 (3%) Query: 17 VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRY-PNGEERCIA---CKLCEAI 72 V + + YP + E + N + + KL + Sbjct: 598 VKMNTDAVDQAVTSLQEFKYPDSWKDAPAETKAEPMTNEFFKNVVKPILTQQGDKLPVSA 657 Query: 73 CPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132 A + CI C C CP AI+ E Sbjct: 658 FEADGRFPLGTSQFEKRGVAINVPQWVPENCIQCNQCAFVCPHSAILPVLAKEEELVGAP 717 Query: 133 ELYYDKE 139 + E Sbjct: 718 ANFTALE 724 >1bc6_A 7-Fe ferredoxin; electron transport, iron-sulfur; NMR {Bacillus schlegelii} SCOP: d.58.1.2 PDB: 1bd6_A 1bqx_A 1bwe_A Length = 77 Score = 43.1 bits (101), Expect = 3e-05 Identities = 21/62 (33%), Positives = 24/62 (38%), Gaps = 13/62 (20%) Query: 60 EERCIACKL--CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 E CI K C +CP I +Y ID CI CG C+ CPV A Sbjct: 5 TEPCIGTKDASCVEVCPVDCIHEGED-----------QYYIDPDVCIDCGACEAVCPVSA 53 Query: 118 IV 119 I Sbjct: 54 IY 55 Score = 28.1 bits (62), Expect = 0.97 Identities = 11/23 (47%), Positives = 13/23 (56%) Query: 60 EERCIACKLCEAICPAQAITIES 82 + CI C CEA+CP AI E Sbjct: 36 PDVCIDCGACEAVCPVSAIYHED 58 >1rof_A Ferredoxin; electron transport, iron-sulfur; NMR {Thermotoga maritima} SCOP: d.58.1.4 PDB: 1vjw_A Length = 60 Score = 41.3 bits (96), Expect = 9e-05 Identities = 12/59 (20%), Positives = 19/59 (32%), Gaps = 9/59 (15%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + CI C +CE +CP + G + ++CP AI Sbjct: 7 ADACIGCGVCENLCPDVFQLGDDGK---------AKVLQPETDLPCAKDAADSCPTGAI 56 Score = 29.4 bits (65), Expect = 0.39 Identities = 7/22 (31%), Positives = 9/22 (40%) Query: 60 EERCIACKLCEAICPAQAITIE 81 E K CP AI++E Sbjct: 38 ETDLPCAKDAADSCPTGAISVE 59 Score = 27.9 bits (61), Expect = 1.1 Identities = 8/24 (33%), Positives = 12/24 (50%) Query: 95 RYDIDMIKCIYCGLCQEACPVDAI 118 + +D CI CG+C+ CP Sbjct: 2 KVRVDADACIGCGVCENLCPDVFQ 25 >1dax_A Ferredoxin I; electron transport, electron-transfer protein, 4Fe-4S cluster; NMR {Desulfovibrio africanus} SCOP: d.58.1.4 PDB: 1dfd_A 1fxr_A Length = 64 Score = 41.2 bits (96), Expect = 1e-04 Identities = 12/59 (20%), Positives = 20/59 (33%), Gaps = 7/59 (11%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++ CIAC+ C I P + + D++ + CPV I Sbjct: 8 QDECIACESCVEIAPGAFAMDPEIEKAYV-------KDVEGASQEEVEEAMDTCPVQCI 59 Score = 26.6 bits (58), Expect = 3.1 Identities = 5/28 (17%), Positives = 6/28 (21%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIE 81 + CP Q I E Sbjct: 35 YVKDVEGASQEEVEEAMDTCPVQCIHWE 62 Score = 25.8 bits (56), Expect = 5.4 Identities = 7/30 (23%), Positives = 13/30 (43%) Query: 95 RYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124 ++ +D +CI C C E P ++ Sbjct: 3 KFYVDQDECIACESCVEIAPGAFAMDPEIE 32 >2ivf_B Ethylbenzene dehydrogenase beta-subunit; anaerobic hydrocarbon degradation, MOCO, Fe/S cluster, MO- bismgd enzyme, DMSO reductase family; HET: MES MGD MD1 HEM; 1.88A {Azoarcus SP} Length = 352 Score = 38.3 bits (88), Expect = 8e-04 Identities = 14/63 (22%), Positives = 18/63 (28%), Gaps = 4/63 (6%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 +ERC + C CP +AI T I+ C CP Sbjct: 181 QERCKGHRHCVEACPYKAIYFNP----VSQTSEKCILCYPRIEKGIANACNRQCPGRVRA 236 Query: 120 EGP 122 G Sbjct: 237 FGY 239 Score = 32.9 bits (74), Expect = 0.041 Identities = 20/59 (33%), Positives = 23/59 (38%), Gaps = 11/59 (18%) Query: 62 RCIAC--KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C C C A CP AI R +G V D + +C C EACP AI Sbjct: 150 MCNHCTNPACLAACPTGAIYK----REDNGI---VLVDQE--RCKGHRHCVEACPYKAI 199 Score = 27.9 bits (61), Expect = 1.2 Identities = 8/17 (47%), Positives = 10/17 (58%) Query: 98 IDMIKCIYCGLCQEACP 114 ID+ KC+ C C AC Sbjct: 23 IDLNKCLGCQTCTVACK 39 >1ti6_B Pyrogallol hydroxytransferase small subunit; molybdenum binding enzyme, MGD-cofactors, DMSO-reductase family, 4Fe-4S-cluster; HET: MGD BTT; 2.00A {Pelobacter acidigallici} SCOP: b.3.5.1 d.58.1.5 PDB: 1ti2_B* 1ti4_B* 1vld_N* 1vle_N* 1vlf_N* Length = 274 Score = 37.4 bits (86), Expect = 0.001 Identities = 6/57 (10%), Positives = 8/57 (14%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + K CP + D C C Sbjct: 98 KAKGKKELLDTCPYGVMYWNEEENVAQKCTMCAHLLDDESWAPKMPRCAHNCGSFVY 154 Score = 29.0 bits (64), Expect = 0.54 Identities = 7/16 (43%), Positives = 8/16 (50%) Query: 98 IDMIKCIYCGLCQEAC 113 ID+ KC C C C Sbjct: 8 IDVAKCQDCNNCFMGC 23 Score = 27.0 bits (59), Expect = 1.9 Identities = 16/88 (18%), Positives = 21/88 (23%), Gaps = 7/88 (7%) Query: 35 NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGT---- 90 G T+ RG ER + P + E+ P G Sbjct: 28 ELNEWPGYTASMQRGHR--WMNIERRERGTYPRNDINYRPTPCMHCENAPCVAKGNGAVY 85 Query: 91 -RRTVRYDIDMIKCIYCGLCQEACPVDA 117 R ID K + CP Sbjct: 86 QREDGIVLIDPEKAKGKKELLDTCPYGV 113 Score = 25.1 bits (54), Expect = 7.7 Identities = 10/65 (15%), Positives = 16/65 (24%), Gaps = 12/65 (18%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK------------CIYCGL 108 +C C C C + E R +I+ + C Sbjct: 11 AKCQDCNNCFMGCMDEHELNEWPGYTASMQRGHRWMNIERRERGTYPRNDINYRPTPCMH 70 Query: 109 CQEAC 113 C+ A Sbjct: 71 CENAP 75 >3mm5_B Sulfite reductase, dissimilatory-type subunit BET; alpha-beta-protein, oxidoreductase; HET: SRM; 1.80A {Archaeoglobus fulgidus} PDB: 3c7b_B* 3mm6_B* 3mm7_B* 3mm8_B* 3mm9_B* 3mma_B* 3mmb_B* 3mmc_B* Length = 366 Score = 37.4 bits (86), Expect = 0.001 Identities = 15/62 (24%), Positives = 23/62 (37%), Gaps = 9/62 (14%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 + A CP A+ P + T +D+ KC+YCG C CP + Sbjct: 207 IRKTCEIPSTVAACPTGALK----PDMKNKT-----IKVDVEKCMYCGNCYTMCPGMPLF 257 Query: 120 EG 121 + Sbjct: 258 DP 259 >1h0h_B Formate dehydrogenase (small subunit); tungsten selenium formate dehydrogenase, selenocysteine, molybdopterin, MGD, iron-sulphur cluster; HET: 2MD MGD EPE; 1.8A {Desulfovibrio gigas} SCOP: d.58.1.5 Length = 214 Score = 37.1 bits (85), Expect = 0.002 Identities = 16/114 (14%), Positives = 25/114 (21%), Gaps = 16/114 (14%) Query: 45 PRFRGEHALRRYPNG-------EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97 + G + + + CP + Sbjct: 85 DMEDESAIIHDDATGCVLFTPKTKDLEDYESVISACPYDVPRKVAESNQMAKCD----MC 140 Query: 98 IDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQEL-----YYDKERLLNNGD 146 ID I C +CP A+ G E L Y +L + D Sbjct: 141 IDRITNGLRPACVTSCPTGAMNFGDLSEMEAMASARLAEIKAAYSDAKLCDPDD 194 Score = 26.7 bits (58), Expect = 2.7 Identities = 7/16 (43%), Positives = 9/16 (56%) Query: 98 IDMIKCIYCGLCQEAC 113 +D +C C CQ AC Sbjct: 6 VDTTRCTACRGCQVAC 21 >3i9v_3 NADH-quinone oxidoreductase subunit 3; electron transport, respiratory chain, 4Fe- 4S, cell membrane, flavoprotein, FMN, iron; HET: FMN; 3.10A {Thermus thermophilus HB8} PDB: 2fug_3* 3iam_3* 3ias_3* Length = 783 Score = 36.2 bits (82), Expect = 0.003 Identities = 16/92 (17%), Positives = 25/92 (27%), Gaps = 1/92 (1%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCI CK C + + + G + CPV A+++ Sbjct: 179 ERCIHCKRCVRYFEEVPGDEVLDFIERGV-HTFIGTMDFGLPSGFSGNITDICPVGALLD 237 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEI 152 A E L G ++ Sbjct: 238 LTARFRARNWEMEETPTTCALCPVGCGITADT 269 Score = 27.0 bits (58), Expect = 2.5 Identities = 5/18 (27%), Positives = 8/18 (44%) Query: 96 YDIDMIKCIYCGLCQEAC 113 +D +CI+C C Sbjct: 174 VILDRERCIHCKRCVRYF 191 >3or1_B Sulfite reductase beta; dissimilatory sulfite reductase, sulfate reduction, oxidored sulfite reduction; HET: SRM; 1.76A {Desulfovibrio gigas} PDB: 3or2_B* 2v4j_B* Length = 386 Score = 35.8 bits (82), Expect = 0.005 Identities = 19/81 (23%), Positives = 31/81 (38%), Gaps = 2/81 (2%) Query: 49 GEHALRRYPNGEERCIACKLCEA-ICPAQAITIESGPRCHD-GTRRTVRYDIDMIKCIYC 106 G + R P + +LCE + A T P + ++ I+ +C+YC Sbjct: 202 GLVGIHRKPPMIDHENLAELCEIPLAVAACPTAAVKPITAEVNGQKVKSVAINNDRCMYC 261 Query: 107 GLCQEACPVDAIVEGPNFEFA 127 G C CP + +G A Sbjct: 262 GNCYTMCPALPLSDGTGDGIA 282 >3or1_A Sulfite reductase alpha; dissimilatory sulfite reductase, sulfate reduction, oxidored sulfite reduction; HET: SRM; 1.76A {Desulfovibrio gigas} PDB: 3or2_A* 2v4j_A* Length = 437 Score = 35.0 bits (80), Expect = 0.009 Identities = 20/115 (17%), Positives = 35/115 (30%), Gaps = 9/115 (7%) Query: 50 EHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR--TVRYDIDMIKCIYCG 107 + A++ Y GE + A I E C G + ID C C Sbjct: 248 QEAVKAYVGGEFKPNAGAHAGRDWGKFDIEAEVVGLCPTGCMTYESGTLSIDNKNCTRCM 307 Query: 108 LCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPY 162 C P + E + + + +G + S ++ I + P+ Sbjct: 308 HCINTMPRALKI-------GDERGASILVGAKAPVLDGAQMGSLLIPFIAAEEPF 355 >3c7b_B Sulfite reductase, dissimilatory-type subunit beta; alpha/beta fold, 4Fe-4S, heme, iron, iron-sulfur, membrane, metal-binding; HET: SRM; 2.00A {Archaeoglobus fulgidus} SCOP: d.58.1.5 d.58.36.2 d.134.1.1 Length = 366 Score = 34.6 bits (79), Expect = 0.011 Identities = 20/83 (24%), Positives = 31/83 (37%), Gaps = 11/83 (13%) Query: 47 FRGEHALRRYPNGEERCIACKLCEAI--CPAQAITIESGPRCHDGTRRTVRYDIDMIKCI 104 G H PN E C++ + CP A+ + + +D+ KC+ Sbjct: 192 IVGIHRTPPIPNDEAIRKTCEIPSTVAACPTGALKPD---------MKNKTIKVDVEKCM 242 Query: 105 YCGLCQEACPVDAIVEGPNFEFA 127 YCG C CP + + N A Sbjct: 243 YCGNCYTMCPGMPLFDPENDGAA 265 >7fd1_A FD1, protein (7-Fe ferredoxin I); electron transport, iron-sulfur; 1.30A {Azotobacter vinelandii} SCOP: d.58.1.2 PDB: 1fda_A 1fdb_A 1fer_A 1axq_A 5fd1_A 6fdr_A 6fd1_A 7fdr_A 1frh_A 1fri_A 1fdd_A 1frl_A 1d3w_A 1frm_A 1frx_A 1g6b_A 1pc4_A 1frj_A 2fd2_A 1fd2_A ... Length = 106 Score = 34.3 bits (78), Expect = 0.012 Identities = 17/62 (27%), Positives = 21/62 (33%), Gaps = 13/62 (20%) Query: 60 EERCIACKL--CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 + CI CK C +CP I +CI C LC+ CP A Sbjct: 5 TDNCIKCKYTDCVEVCPVDCFYEGPN-----------FLVIHPDECIDCALCEPECPAQA 53 Query: 118 IV 119 I Sbjct: 54 IF 55 Score = 25.8 bits (56), Expect = 4.9 Identities = 14/25 (56%), Positives = 14/25 (56%), Gaps = 2/25 (8%) Query: 102 KCIYC--GLCQEACPVDAIVEGPNF 124 CI C C E CPVD EGPNF Sbjct: 7 NCIKCKYTDCVEVCPVDCFYEGPNF 31 >3c8y_A Iron hydrogenase 1; dithiomethylether, H-cluster, 4Fe-4S, iron-sulfur, metal-binding, oxidoreductase; HET: HCN; 1.39A {Clostridium pasteurianum} SCOP: c.96.1.1 d.15.4.2 d.58.1.5 PDB: 1c4c_A* 1c4a_A* 1feh_A* Length = 574 Score = 33.5 bits (76), Expect = 0.023 Identities = 18/71 (25%), Positives = 25/71 (35%), Gaps = 3/71 (4%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD---IDMIKCIYCGLCQEACPVD 116 +C+ C C C T +G D D C+ CG C ACPV Sbjct: 144 RTKCLLCGRCVNACGKNTETYAMKFLNKNGKTIIGAEDEKCFDDTNCLLCGQCIIACPVA 203 Query: 117 AIVEGPNFEFA 127 A+ E + + Sbjct: 204 ALSEKSHMDRV 214 >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} Length = 607 Score = 33.5 bits (76), Expect = 0.023 Identities = 16/63 (25%), Positives = 22/63 (34%), Gaps = 8/63 (12%) Query: 60 EERC----IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 ++C LCE +CP G + I C CG+C CP Sbjct: 26 YDKCNPDKCGHFLCERVCPV----NRMGGEAIIIDEENYKPIIQEASCTGCGICVHKCPF 81 Query: 116 DAI 118 +AI Sbjct: 82 NAI 84 Score = 31.1 bits (70), Expect = 0.14 Identities = 10/25 (40%), Positives = 13/25 (52%) Query: 60 EERCIACKLCEAICPAQAITIESGP 84 E C C +C CP AI+I + P Sbjct: 66 EASCTGCGICVHKCPFNAISIVNLP 90 >2v4j_A Sulfite reductase, dissimilatory-type subunit alpha; dissimilatory sulfite reductase, complex, siroheme, oxidoreductase; HET: SRM; 2.10A {Desulfovibrio vulgaris} SCOP: d.58.1.5 d.58.36.2 d.134.1.1 Length = 437 Score = 32.2 bits (73), Expect = 0.051 Identities = 11/72 (15%), Positives = 22/72 (30%), Gaps = 15/72 (20%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 G H+ R + + CP++ + + + ID +C+ C Sbjct: 263 AGAHSGRDWG----KFDIEAEVVNRCPSKCMKWDGS-----------KLSIDNKECVRCM 307 Query: 108 LCQEACPVDAIV 119 C P + Sbjct: 308 HCINTMPRALHI 319 >2v4j_B Sulfite reductase, dissimilatory-type subunit beta; dissimilatory sulfite reductase, complex, siroheme, oxidoreductase; HET: SRM; 2.10A {Desulfovibrio vulgaris} SCOP: d.58.1.5 d.58.36.2 d.134.1.1 Length = 381 Score = 32.3 bits (73), Expect = 0.059 Identities = 17/81 (20%), Positives = 27/81 (33%), Gaps = 2/81 (2%) Query: 49 GEHALRRYPNGEERCIACKLCE--AICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYC 106 G + R P + +LCE + + G ++ I +C+YC Sbjct: 202 GVVGIHRKPPMIDHEWTDQLCEIPLAVASCPTAAVRPTKLEIGDKKVNTIAIKNERCMYC 261 Query: 107 GLCQEACPVDAIVEGPNFEFA 127 G C CP I +G Sbjct: 262 GNCYTMCPALPISDGEGDGVV 282 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 31.1 bits (70), Expect = 0.11 Identities = 11/64 (17%), Positives = 18/64 (28%), Gaps = 28/64 (43%) Query: 13 LKEFVGAF---FLC-------------------------LRYFFKAKTTINYPFEKGSTS 44 L + F +L ++ + A+ PF+K S S Sbjct: 84 LNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNS 143 Query: 45 PRFR 48 FR Sbjct: 144 ALFR 147 Score = 29.5 bits (66), Expect = 0.37 Identities = 24/109 (22%), Positives = 37/109 (33%), Gaps = 43/109 (39%) Query: 76 QAITI--ESGPRCHDGTRRT-----VRYD-ID--------M--IKCIYCGLCQEACPVDA 117 +AIT+ G RC++ T + D ++ M I L QE V Sbjct: 298 KAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSIS----NLTQEQ--VQD 351 Query: 118 IVEGPNFEFATETRQELYYDKERL---LNNGDRWESEIVRNIVTDSPYR 163 V +T L K ++ L NG +N+V P + Sbjct: 352 YVN--------KTNSHLPAGK-QVEISLVNGA-------KNLVVSGPPQ 384 >2vpz_B NRFC protein; oxidoreductase, molybdopterin guanine dinucleotide, iron-sulfur, metal-binding, molybdopterin; HET: MGD; 2.4A {Thermus thermophilus} PDB: 2vpx_B* 2vpw_B* 2vpy_B* Length = 195 Score = 30.7 bits (68), Expect = 0.19 Identities = 20/88 (22%), Positives = 27/88 (30%), Gaps = 2/88 (2%) Query: 45 PRFRGEHALRRYPNGEERCIACKLCEAICP--AQAITIESGPRCHDGTRRTVRYDIDMIK 102 P +R GE + + C + P + +D K Sbjct: 30 PPGVFNLWIREREVGEYPNLVVEFRPEQCLHCENPPCVPVCPTGASYQTKDGLVLVDPKK 89 Query: 103 CIYCGLCQEACPVDAIVEGPNFEFATET 130 CI CG C ACP DA P + T Sbjct: 90 CIACGACIAACPYDARYLHPAGYVSKCT 117 Score = 29.9 bits (66), Expect = 0.27 Identities = 11/65 (16%), Positives = 18/65 (27%), Gaps = 7/65 (10%) Query: 61 ERCIACKLCEAICPA-----QAITIESGPRCHDGTRRTVRYDIDMIKCIYC--GLCQEAC 113 C+ C C C + G + + +C++C C C Sbjct: 11 SLCVGCAACAVACKMENEVPPGVFNLWIREREVGEYPNLVVEFRPEQCLHCENPPCVPVC 70 Query: 114 PVDAI 118 P A Sbjct: 71 PTGAS 75 Score = 28.7 bits (63), Expect = 0.66 Identities = 7/18 (38%), Positives = 10/18 (55%) Query: 98 IDMIKCIYCGLCQEACPV 115 ID+ C+ C C AC + Sbjct: 8 IDLSLCVGCAACAVACKM 25 Score = 25.3 bits (54), Expect = 6.7 Identities = 14/62 (22%), Positives = 20/62 (32%), Gaps = 5/62 (8%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ++CIAC C A CP A + + ++ C E CP Sbjct: 88 KKCIACGACIAACPYDARYLHPAGY-----VSKCTFCAHRLEKGKVPACVETCPTYCRTF 142 Query: 121 GP 122 G Sbjct: 143 GD 144 >3c7b_A Sulfite reductase, dissimilatory-type subunit alpha; alpha/beta fold, 4Fe-4S, heme, iron, iron-sulfur, membrane, metal-binding; HET: SRM; 2.00A {Archaeoglobus fulgidus} SCOP: d.58.1.5 d.58.36.2 d.134.1.1 Length = 417 Score = 28.7 bits (64), Expect = 0.60 Identities = 10/60 (16%), Positives = 14/60 (23%), Gaps = 11/60 (18%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 +CP AI + ID +C+ C C P Sbjct: 256 MDIENEVVKLCPTGAIKWDGK-----------ELTIDNRECVRCMHCINKMPKALKPGDE 304 >2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A* Length = 584 Score = 28.5 bits (62), Expect = 0.71 Identities = 7/17 (41%), Positives = 10/17 (58%) Query: 63 CIACKLCEAICPAQAIT 79 C+ CK C+ P+Q I Sbjct: 553 CVHCKTCDIKDPSQNIN 569 Score = 25.0 bits (53), Expect = 7.4 Identities = 14/66 (21%), Positives = 21/66 (31%), Gaps = 18/66 (27%) Query: 69 CEAICPAQA---ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV------ 119 + CPA + +E G R I+ C++C C P I Sbjct: 524 EQRFCPAGVYEFVPLEQGDG--------FRLQINAQNCVHCKTCDIKDPSQNINWVVPEG 575 Query: 120 -EGPNF 124 GP + Sbjct: 576 GGGPAY 581 >3mm5_A Sulfite reductase, dissimilatory-type subunit ALP; alpha-beta-protein, oxidoreductase; HET: SRM; 1.80A {Archaeoglobus fulgidus} PDB: 3mm6_A* 3mm7_A* 3mm8_A* 3mm9_A* 3mma_A* 3mmb_A* 3mmc_A* 3c7b_A* Length = 418 Score = 28.4 bits (63), Expect = 0.74 Identities = 9/66 (13%), Positives = 17/66 (25%), Gaps = 1/66 (1%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 + + A K + + ++ P ID +C+ C C P Sbjct: 241 DDIKVDQEAVKEYASWMDIENEVVKLCPT-GAIKWDGKELTIDNRECVRCMHCINKMPKA 299 Query: 117 AIVEGP 122 Sbjct: 300 LKPGDE 305 >3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae} Length = 197 Score = 26.8 bits (59), Expect = 2.6 Identities = 9/43 (20%), Positives = 12/43 (27%), Gaps = 10/43 (23%) Query: 84 PRCHDGTRRT-VRYDI---DMIKCIYCGLCQEACPVDAIVEGP 122 P C + D++ C CGL VD Sbjct: 25 PEC--KVYPPKIVERFSEGDVV-CALCGLVLSDKLVD---TRS 61 >2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, FMN, FAD, iron, 3Fe-4S, 4Fe-4S, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense} Length = 456 Score = 26.6 bits (58), Expect = 2.8 Identities = 8/19 (42%), Positives = 9/19 (47%), Gaps = 2/19 (10%) Query: 103 CIYCG--LCQEACPVDAIV 119 C CG CQ CPV + Sbjct: 22 CSQCGVPFCQVHCPVSNNI 40 Score = 25.5 bits (55), Expect = 5.9 Identities = 14/78 (17%), Positives = 22/78 (28%), Gaps = 21/78 (26%) Query: 61 ERCIACK--LCEAICPAQAITIESGPRCHDGTRRTVRYD--IDMIK------------CI 104 RC C C+ CP P T R + ++ + C Sbjct: 20 NRCSQCGVPFCQVHCPVSNNI----PDWLKLTSEG-RLEEAYEVSQATNNFPEICGRICP 74 Query: 105 YCGLCQEACPVDAIVEGP 122 LC+ C ++ G Sbjct: 75 QDRLCEGNCVIEQSTHGA 92 >2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone receptor/immune system complex; 3.80A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1 Length = 897 Score = 26.4 bits (57), Expect = 3.1 Identities = 18/66 (27%), Positives = 21/66 (31%), Gaps = 9/66 (13%) Query: 58 NGEERCIACKLCEAICP---AQAITIESGPRCHDGTRRTVRYDIDMIKCIYC------GL 108 ERC C+ +CP G CH D KC+ C G Sbjct: 177 QFVERCWTHSHCQKVCPTICKSHGCTAEGLCCHSECLGNCSQPDDPTKCVACRNFYLDGR 236 Query: 109 CQEACP 114 C E CP Sbjct: 237 CVETCP 242 >1wyr_A RHO guanine nucleotide exchange factor 6; CH domain, all-alpha, NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} Length = 121 Score = 25.7 bits (56), Expect = 4.8 Identities = 10/59 (16%), Positives = 17/59 (28%), Gaps = 4/59 (6%) Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124 CKL + P P+ + + + + P D + G NF Sbjct: 46 CKLINRLMPGSVEKFCLDPQTEADCINNINDFLKGCATLQVEIFD---PDD-LYSGVNF 100 >2bs2_B Quinol-fumarate reductase iron-sulfur subunit B; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.1.2.1 d.15.4.2 PDB: 2bs3_B* 1e7p_B* 1qlb_B* 2bs4_B* Length = 241 Score = 25.6 bits (55), Expect = 6.0 Identities = 14/80 (17%), Positives = 24/80 (30%), Gaps = 17/80 (21%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPR------------CHDGTRRTVRYDIDMI 101 + +RCI C C A C + + + HD Y++ Sbjct: 142 AQEVFELDRCIECGCCIAACGTKIMREDFVGAAGLNRVVRFMIDPHDERTDEDYYELIGD 201 Query: 102 K-----CIYCGLCQEACPVD 116 C+ C + CP + Sbjct: 202 DDGVFGCMTLLACHDVCPKN 221 >3i9v_1 NADH-quinone oxidoreductase subunit 1; electron transport, respiratory chain, 4Fe- 4S, cell membrane, flavoprotein, FMN, iron; HET: FMN; 3.10A {Thermus thermophilus HB8} PDB: 2fug_1* 3iam_1* 3ias_1* Length = 438 Score = 25.5 bits (55), Expect = 6.5 Identities = 9/56 (16%), Positives = 15/56 (26%), Gaps = 1/56 (1%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG-LCQEACP 114 E C C C + + + G + V ++ I C A Sbjct: 350 HESCGKCTPCREGVAGFMVNLFAKIGTGQGEEKDVENLEALLPLIEGRSFCPLADA 405 >1igr_A Protein (insulin-like growth factor receptor 1); hormone receptor, insulin receptor family; HET: NAG FUC BMA MAN; 2.60A {Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1 Length = 478 Score = 25.0 bits (54), Expect = 8.1 Identities = 15/64 (23%), Positives = 25/64 (39%), Gaps = 9/64 (14%) Query: 62 RCIACKLCEAICPA---QAITIESGPRCHDGTRRTVRYDIDMIKCIYC------GLCQEA 112 RC C+ +CP+ + E+ CH + + C+ C G+C A Sbjct: 174 RCWTTNRCQKMCPSTCGKRACTENNECCHPECLGSCSAPDNDTACVACRHYYYAGVCVPA 233 Query: 113 CPVD 116 CP + Sbjct: 234 CPPN 237 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.328 0.143 0.465 Gapped Lambda K H 0.267 0.0516 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 1,525,325 Number of extensions: 70433 Number of successful extensions: 419 Number of sequences better than 10.0: 1 Number of HSP's gapped: 341 Number of HSP's successfully gapped: 116 Length of query: 163 Length of database: 5,693,230 Length adjustment: 85 Effective length of query: 78 Effective length of database: 3,632,490 Effective search space: 283334220 Effective search space used: 283334220 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 53 (24.7 bits)