RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780861|ref|YP_003065274.1| NADH dehydrogenase subunit I
[Candidatus Liberibacter asiaticus str. psy62]
         (163 letters)



>3i9v_9 NADH-quinone oxidoreductase subunit 9; electron transport,
           respiratory chain, 4Fe- 4S, cell membrane, flavoprotein,
           FMN, iron; HET: FMN; 3.10A {Thermus thermophilus HB8}
           PDB: 2fug_9* 3iam_9* 3ias_9*
          Length = 182

 Score =  138 bits (349), Expect = 4e-34
 Identities = 59/152 (38%), Positives = 81/152 (53%), Gaps = 7/152 (4%)

Query: 11  LFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCE 70
           + LK    +  + L+Y F    T+ YP    +  PRF G H L R+PNG E+CI C LC 
Sbjct: 1   MTLKALAQSLGITLKYLFSKPVTVPYPDAPVALKPRFHGRHVLTRHPNGLEKCIGCSLCA 60

Query: 71  AICPAQAITIESGP-----RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           A CPA AI +E            G R    Y+I+M++CI+CGLC+EACP  AIV G +FE
Sbjct: 61  AACPAYAIYVEPAENDPENPVSAGERYAKVYEINMLRCIFCGLCEEACPTGAIVLGYDFE 120

Query: 126 FATETRQELYYDKERLLNN--GDRWESEIVRN 155
            A     +L Y KE +L +  G + +    + 
Sbjct: 121 MADYEYSDLVYGKEDMLVDVVGTKPQRREAKR 152


>1jb0_C Photosystem I iron-sulfur center; membrane protein,
           multiprotein-pigment complex, photosynthesis; HET: CL1
           PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP:
           d.58.1.2 PDB: 1k0t_A 2wsc_C* 2wse_C* 2wsf_C* 2o01_C*
          Length = 80

 Score = 60.2 bits (145), Expect = 2e-10
 Identities = 15/68 (22%), Positives = 24/68 (35%), Gaps = 7/68 (10%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
           H ++ Y    + CI C  C   CP   + +             +        C+ C  C+
Sbjct: 2   HTVKIY----DTCIGCTQCVRACPTDVLEMVPWD---GCKAGQIASSPRTEDCVGCKRCE 54

Query: 111 EACPVDAI 118
            ACP D +
Sbjct: 55  TACPTDFL 62



 Score = 31.3 bits (70), Expect = 0.10
 Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 1/34 (2%)

Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRT 93
           E C+ CK CE  CP   ++I       + TR  
Sbjct: 44 TEDCVGCKRCETACPTDFLSIRVYLG-AETTRSM 76



 Score = 29.8 bits (66), Expect = 0.35
 Identities = 8/18 (44%), Positives = 9/18 (50%)

Query: 102 KCIYCGLCQEACPVDAIV 119
            CI C  C  ACP D + 
Sbjct: 9   TCIGCTQCVRACPTDVLE 26


>2fdn_A Ferredoxin; electron transport, iron-sulfur, 4Fe-4S; 0.94A
           {Clostridium acidurici} SCOP: d.58.1.1 PDB: 1fdn_A
           1fca_A 1clf_A 1dur_A
          Length = 55

 Score = 58.4 bits (141), Expect = 6e-10
 Identities = 25/61 (40%), Positives = 28/61 (45%), Gaps = 11/61 (18%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
            E CI+C  CE  CP  AI+               RY ID   CI CG C   CPVDA V
Sbjct: 5   NEACISCGACEPECPVNAISSGD-----------DRYVIDADTCIDCGACAGVCPVDAPV 53

Query: 120 E 120
           +
Sbjct: 54  Q 54



 Score = 31.9 bits (72), Expect = 0.066
 Identities = 11/22 (50%), Positives = 14/22 (63%)

Query: 102 KCIYCGLCQEACPVDAIVEGPN 123
            CI CG C+  CPV+AI  G +
Sbjct: 7   ACISCGACEPECPVNAISSGDD 28


>3eun_A Ferredoxin; electron transport, [4Fe-4S] cluster, 4Fe-4S, iron,
           iron-sulfur, metal-binding, transport; 1.05A
           {Allochromatium vinosum} PDB: 1blu_A 3exy_A
          Length = 82

 Score = 56.0 bits (134), Expect = 4e-09
 Identities = 27/86 (31%), Positives = 38/86 (44%), Gaps = 8/86 (9%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
            + CI C +CE  CP  AI+        + +  T     + +       C E CPVDAI+
Sbjct: 5   TDECINCDVCEPECPNGAISQGDETYVIEPSLCT-----ECVGHYETSQCVEVCPVDAII 59

Query: 120 EGPNFEFATETRQELYYDKERLLNNG 145
           + P+ E   ET  EL    ER+   G
Sbjct: 60  KDPSHE---ETEDELRAKYERITGEG 82


>1xer_A Ferredoxin; electron transport, iron-sulfur, duplication; 2.00A
           {Sulfolobus tokodaii str} SCOP: d.58.1.3 PDB: 2vkr_A
          Length = 103

 Score = 54.8 bits (131), Expect = 8e-09
 Identities = 16/59 (27%), Positives = 22/59 (37%), Gaps = 2/59 (3%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            + CIA   C   CP         P      ++     ++   CI+C  C   CPV AI
Sbjct: 42  FDLCIADGSCINACPVNVFQWYDTPGHPASEKKA--DPVNEQACIFCMACVNVCPVAAI 98



 Score = 34.0 bits (77), Expect = 0.015
 Identities = 9/21 (42%), Positives = 11/21 (52%)

Query: 98  IDMIKCIYCGLCQEACPVDAI 118
           +D   CI  G C  ACPV+  
Sbjct: 40  VDFDLCIADGSCINACPVNVF 60



 Score = 29.0 bits (64), Expect = 0.52
 Identities = 10/26 (38%), Positives = 14/26 (53%)

Query: 56  YPNGEERCIACKLCEAICPAQAITIE 81
            P  E+ CI C  C  +CP  AI ++
Sbjct: 76  DPVNEQACIFCMACVNVCPVAAIDVK 101


>3gyx_B Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A
           {Desulfovibrio gigas}
          Length = 166

 Score = 53.9 bits (129), Expect = 1e-08
 Identities = 17/73 (23%), Positives = 26/73 (35%), Gaps = 13/73 (17%)

Query: 60  EERCIACK-----LCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
             +C  CK      C  ICP   + ++              ++ +   C  C  C + CP
Sbjct: 6   PSKCDGCKGGEKTACMYICPNDLMILDPEEM--------KAFNQEPEACWECYSCIKICP 57

Query: 115 VDAIVEGPNFEFA 127
             AI   P  +FA
Sbjct: 58  QGAITARPYADFA 70



 Score = 31.6 bits (71), Expect = 0.092
 Identities = 9/31 (29%), Positives = 12/31 (38%), Gaps = 5/31 (16%)

Query: 98  IDMIKCIYC-----GLCQEACPVDAIVEGPN 123
           +D  KC  C       C   CP D ++  P 
Sbjct: 4   VDPSKCDGCKGGEKTACMYICPNDLMILDPE 34


>2zvs_A Uncharacterized ferredoxin-like protein YFHL; electron transport,
           [4Fe-4S] clusters, iron- sulfur clusters, reduction
           potential; 1.65A {Escherichia coli k-12}
          Length = 85

 Score = 54.0 bits (129), Expect = 2e-08
 Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 22/95 (23%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYC------GLCQEAC 113
            ++CI C +CE  CP +AI++               Y+I+  KC  C        CQ+ C
Sbjct: 5   TKKCINCDMCEPECPNEAISMG-----------DHIYEINSDKCTECVGHYETPTCQKVC 53

Query: 114 PVDA-IVEGPNFEFATETRQELYYDKERLLNNGDR 147
           P+   IV+ P      ET ++L +DK  L+++ D+
Sbjct: 54  PIPNTIVKDPAH---VETEEQL-WDKFVLMHHADK 84


>1rgv_A Ferredoxin; electron transport; 2.90A {Thauera aromatica K172}
           SCOP: d.58.1.1
          Length = 80

 Score = 53.3 bits (127), Expect = 2e-08
 Identities = 28/87 (32%), Positives = 36/87 (41%), Gaps = 20/87 (22%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYC------GLCQEACP 114
           + C AC  C   CP +AIT                Y ID  KC  C        C+  CP
Sbjct: 6   DDCTACDACVEECPNEAIT-----------PGDPIYVIDPTKCSECVGAFDEPQCRLVCP 54

Query: 115 VDAIVEGPNFEFATETRQELYYDKERL 141
            D I + P++    ETR+EL    +RL
Sbjct: 55  ADCIPDNPDYR---ETREELQEKYDRL 78


>2fgo_A Ferredoxin; allochromatium vinosum, [4Fe-4S] cluster, reduction
           potential, iron binding protein electron transport;
           1.32A {Pseudomonas aeruginosa}
          Length = 82

 Score = 52.5 bits (125), Expect = 4e-08
 Identities = 23/87 (26%), Positives = 33/87 (37%), Gaps = 20/87 (22%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYC------GLCQEACP 114
           + CI C +CE  CP  AI+           +    Y ID   C  C        CQ+ CP
Sbjct: 6   DDCINCDVCEPECPNGAIS-----------QGEEIYVIDPNLCTECVGHYDEPQCQQVCP 54

Query: 115 VDAIVEGPNFEFATETRQELYYDKERL 141
           VD I          E++ +L     ++
Sbjct: 55  VDCIPLDDANV---ESKDQLMEKYRKI 78


>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin,
            iron-sulfur clusters, pyrimidine catabolism,
            5-fluorouracil degradation, oxidoreductase; HET: FMN FAD;
            1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1
            d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
          Length = 1025

 Score = 49.7 bits (118), Expect = 3e-07
 Identities = 19/63 (30%), Positives = 20/63 (31%), Gaps = 14/63 (22%)

Query: 60   EERCIACKLCEAIC---PAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV- 115
            EE CI C  C   C     QAI         D              C  C LC   CP+ 
Sbjct: 950  EEMCINCGKCYMTCNDSGYQAIQF-------DPETH---LPTVTDTCTGCTLCLSVCPII 999

Query: 116  DAI 118
            D I
Sbjct: 1000 DCI 1002



 Score = 31.2 bits (70), Expect = 0.12
 Identities = 10/39 (25%), Positives = 16/39 (41%), Gaps = 1/39 (2%)

Query: 54   RRYPNGEERCIACKLCEAICPAQ-AITIESGPRCHDGTR 91
               P   + C  C LC ++CP    I + S    ++  R
Sbjct: 977  THLPTVTDTCTGCTLCLSVCPIIDCIRMVSRTTPYEPKR 1015



 Score = 26.9 bits (59), Expect = 2.4
 Identities = 6/19 (31%), Positives = 10/19 (52%), Gaps = 2/19 (10%)

Query: 103 CIYCGL--CQEACPVDAIV 119
           C+ C    CQ++CP    +
Sbjct: 79  CLKCADAPCQKSCPTHLDI 97



 Score = 26.5 bits (58), Expect = 2.8
 Identities = 10/24 (41%), Positives = 10/24 (41%), Gaps = 3/24 (12%)

Query: 98  IDMIKCIYCGLCQEAC---PVDAI 118
           ID   CI CG C   C      AI
Sbjct: 948 IDEEMCINCGKCYMTCNDSGYQAI 971


>1dwl_A Ferredoxin I; electron transfer, model, heteronuclear docking; HET:
           HEC; NMR {Desulfovibrio desulfuricans} SCOP: i.4.1.1
          Length = 59

 Score = 48.6 bits (115), Expect = 6e-07
 Identities = 14/59 (23%), Positives = 20/59 (33%), Gaps = 8/59 (13%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E CI C+ C  +CP     I+   +                         +ACPV+AI
Sbjct: 6   HEECIGCESCVELCPEVFAMIDGEEK--------AMVTAPDSTAECAQDAIDACPVEAI 56



 Score = 29.8 bits (66), Expect = 0.28
 Identities = 9/23 (39%), Positives = 11/23 (47%)

Query: 98  IDMIKCIYCGLCQEACPVDAIVE 120
           ID  +CI C  C E CP    + 
Sbjct: 4   IDHEECIGCESCVELCPEVFAMI 26



 Score = 29.4 bits (65), Expect = 0.36
 Identities = 5/32 (15%), Positives = 9/32 (28%)

Query: 50 EHALRRYPNGEERCIACKLCEAICPAQAITIE 81
                    +      +     CP +AI+ E
Sbjct: 28 GEEKAMVTAPDSTAECAQDAIDACPVEAISKE 59


>1f2g_A Ferredoxin II; electron transport, FDII desulfovibrio gigas; NMR
           {Desulfovibrio gigas} SCOP: d.58.1.4 PDB: 1fxd_A
          Length = 58

 Score = 47.5 bits (112), Expect = 1e-06
 Identities = 14/61 (22%), Positives = 21/61 (34%), Gaps = 8/61 (13%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
            + C+AC+ C  ICP      E G +                         ++CP +AIV
Sbjct: 5   NDDCMACEACVEICPDVFEMNEEGDK--------AVVINPDSDLDCVEEAIDSCPAEAIV 56

Query: 120 E 120
            
Sbjct: 57  R 57



 Score = 25.2 bits (54), Expect = 6.9
 Identities = 6/26 (23%), Positives = 9/26 (34%)

Query: 54 RRYPNGEERCIACKLCEAICPAQAIT 79
              N +      +     CPA+AI 
Sbjct: 31 AVVINPDSDLDCVEEAIDSCPAEAIV 56


>1hfe_L Protein (Fe-only hydrogenase (E.C.1.18.99.1) (larger subunit));
           X-RAY crystallography, hydrogene metabolism, periplasm;
           1.60A {Desulfovibrio vulgaris subsp} SCOP: c.96.1.1
           d.58.1.5 PDB: 1e08_A* 1gx7_A*
          Length = 421

 Score = 47.6 bits (113), Expect = 1e-06
 Identities = 23/67 (34%), Positives = 27/67 (40%), Gaps = 11/67 (16%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI-KCIYCGLCQEACPVDAI 118
           E +CI C  C   CP  AI  E G              I  I  CI CG C   CP +AI
Sbjct: 32  EAKCIGCDTCSQYCPTAAIFGEMGEPHS----------IPHIEACINCGQCLTHCPENAI 81

Query: 119 VEGPNFE 125
            E  ++ 
Sbjct: 82  YEAQSWV 88



 Score = 32.2 bits (73), Expect = 0.053
 Identities = 11/24 (45%), Positives = 12/24 (50%)

Query: 98  IDMIKCIYCGLCQEACPVDAIVEG 121
           ID  KCI C  C + CP  AI   
Sbjct: 30  IDEAKCIGCDTCSQYCPTAAIFGE 53


>1sj1_A Ferredoxin; thermostability, iron-sulfur cluster, hexammine
           cobalt(III), electron transport; HET: NCO; 1.50A
           {Pyrococcus furiosus} SCOP: d.58.1.4 PDB: 1siz_A* 2z8q_A
          Length = 66

 Score = 47.5 bits (112), Expect = 1e-06
 Identities = 15/59 (25%), Positives = 22/59 (37%), Gaps = 5/59 (8%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           ++ CI   +C ++CP      + G       +  V    D           EACPV AI
Sbjct: 8   QDTCIGDAICASLCPDVFEMNDEGKA-----QPKVEVIEDEELYNCAKEAMEACPVSAI 61



 Score = 30.9 bits (69), Expect = 0.15
 Identities = 6/26 (23%), Positives = 10/26 (38%)

Query: 95  RYDIDMIKCIYCGLCQEACPVDAIVE 120
           +  +D   CI   +C   CP    + 
Sbjct: 3   KVSVDQDTCIGDAICASLCPDVFEMN 28



 Score = 30.1 bits (67), Expect = 0.26
 Identities = 10/31 (32%), Positives = 10/31 (32%)

Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIE 81
                   EE     K     CP  AITIE
Sbjct: 34 QPKVEVIEDEELYNCAKEAMEACPVSAITIE 64


>1iqz_A Ferredoxin; iron-sulfer protein, ultlahigh resolution analysis,
           geometry of [4Fe-4S] cluster, electron transport; 0.92A
           {Bacillus thermoproteolyticus} SCOP: d.58.1.4 PDB:
           1ir0_A 1wtf_A*
          Length = 81

 Score = 45.7 bits (108), Expect = 4e-06
 Identities = 16/59 (27%), Positives = 20/59 (33%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           +E CIAC  C A  P      E G             ++  I         E CP D+I
Sbjct: 8   KETCIACGACGAAAPDIYDYDEDGIAYVTLDDNQGIVEVPDILIDDMMDAFEGCPTDSI 66



 Score = 30.0 bits (67), Expect = 0.29
 Identities = 4/40 (10%), Positives = 8/40 (20%)

Query: 45 PRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGP 84
               +         +            CP  +I +   P
Sbjct: 33 AYVTLDDNQGIVEVPDILIDDMMDAFEGCPTDSIKVADEP 72



 Score = 27.6 bits (61), Expect = 1.3
 Identities = 8/17 (47%), Positives = 9/17 (52%)

Query: 98  IDMIKCIYCGLCQEACP 114
           +D   CI CG C  A P
Sbjct: 6   VDKETCIACGACGAAAP 22


>1jnr_B Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A
           {Archaeoglobus fulgidus dsm 4304} SCOP: d.58.1.5 PDB:
           1jnz_B* 2fja_B* 2fjb_B* 2fjd_B* 2fje_B*
          Length = 150

 Score = 45.2 bits (106), Expect = 7e-06
 Identities = 18/73 (24%), Positives = 28/73 (38%), Gaps = 13/73 (17%)

Query: 60  EERCIACK-----LCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
            E+C  CK      CE ICP   +T++              Y+ +   C  C  C + CP
Sbjct: 7   PEKCDGCKALERTACEYICPNDLMTLDKEKMKA--------YNREPDMCWECYSCVKMCP 58

Query: 115 VDAIVEGPNFEFA 127
             AI      +++
Sbjct: 59  QGAIDVRGYVDYS 71



 Score = 30.6 bits (68), Expect = 0.18
 Identities = 8/42 (19%), Positives = 14/42 (33%), Gaps = 5/42 (11%)

Query: 98  IDMIKCIYCG-----LCQEACPVDAIVEGPNFEFATETRQEL 134
           ++  KC  C       C+  CP D +        A     ++
Sbjct: 5   VNPEKCDGCKALERTACEYICPNDLMTLDKEKMKAYNREPDM 46


>1h98_A Ferredoxin; electron transport, thermophilic, iron-sulfur,
           azotobacter, hydrogen bonds, stability, high resolution;
           1.64A {Thermus aquaticus} SCOP: d.58.1.2
          Length = 78

 Score = 45.0 bits (106), Expect = 8e-06
 Identities = 20/68 (29%), Positives = 27/68 (39%), Gaps = 13/68 (19%)

Query: 60  EERCIACKL--CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
            E CI  K   C  +CP + I                ++ I   +CI CG C  ACPV+A
Sbjct: 5   CEPCIGVKDQSCVEVCPVECIYDGGD-----------QFYIHPEECIDCGACVPACPVNA 53

Query: 118 IVEGPNFE 125
           I    +  
Sbjct: 54  IYPEEDVP 61


>1q16_B Respiratory nitrate reductase 1 beta chain; membrane protein,
           electron-transfer, oxidoreductase; HET: FME MD1 HEM AGA
           3PH; 1.90A {Escherichia coli} SCOP: d.58.1.5 PDB:
           1r27_B* 1siw_B* 1y5i_B* 1y5l_B* 1y5n_B* 3ir5_B* 3ir6_B*
           3ir7_B* 1y4z_B*
          Length = 512

 Score = 44.3 bits (104), Expect = 1e-05
 Identities = 21/90 (23%), Positives = 28/90 (31%), Gaps = 18/90 (20%)

Query: 38  FEKGSTSPRFRG--EHALRRYPNGE-----ERCIACKL--CEAICPAQAITIESGPRCHD 88
           F+K +    F    +    ++ N         C  C    C A CP+ AI          
Sbjct: 152 FDKLAKDKNFDNIQKAMYSQFENTFMMYLPRLCEHCLNPACVATCPSGAIY-------KR 204

Query: 89  GTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
                V  D D  KC    +C   CP   I
Sbjct: 205 EEDGIVLIDQD--KCRGWRMCITGCPYKKI 232



 Score = 40.9 bits (95), Expect = 1e-04
 Identities = 11/61 (18%), Positives = 19/61 (31%), Gaps = 4/61 (6%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ++C   ++C   CP + I          G      +    I+     +C E C       
Sbjct: 215 DKCRGWRMCITGCPYKKIYFNWK----SGKSEKCIFCYPRIEAGQPTVCSETCVGRIRYL 270

Query: 121 G 121
           G
Sbjct: 271 G 271



 Score = 31.6 bits (71), Expect = 0.097
 Identities = 6/21 (28%), Positives = 9/21 (42%)

Query: 98  IDMIKCIYCGLCQEACPVDAI 118
           +++ KCI C  C   C     
Sbjct: 11  LNLDKCIGCHTCSVTCKNVWT 31



 Score = 26.2 bits (57), Expect = 3.7
 Identities = 6/21 (28%), Positives = 9/21 (42%)

Query: 61 ERCIACKLCEAICPAQAITIE 81
          ++CI C  C   C     + E
Sbjct: 14 DKCIGCHTCSVTCKNVWTSRE 34


>1kqf_B FDH-N beta, formate dehydrogenase, nitrate-inducible, iron- sulfur
           subunit; oxidoreductase, selenium, selenocysteine,
           seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia
           coli} SCOP: d.58.1.5 f.23.22.1 PDB: 1kqg_B*
          Length = 294

 Score = 43.7 bits (102), Expect = 2e-05
 Identities = 19/79 (24%), Positives = 24/79 (30%), Gaps = 4/79 (5%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
            CI C  C A CP     +       D         +D +       C + CP  AI  G
Sbjct: 132 NCIGCGYCIAGCPFNIPRLNKE----DNRVYKCTLCVDRVSVGQEPACVKTCPTGAIHFG 187

Query: 122 PNFEFATETRQELYYDKER 140
              E      Q +   K R
Sbjct: 188 TKKEMLELAEQRVAKLKAR 206



 Score = 32.5 bits (73), Expect = 0.045
 Identities = 14/73 (19%), Positives = 25/73 (34%), Gaps = 11/73 (15%)

Query: 48  RGEHALRRYPNGEERCIACK--LCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105
             ++    +   ++ C+ C+   C   CP+         +  +G       D     CI 
Sbjct: 85  TEQNGKLEWLIRKDGCMHCEDPGCLKACPSAGAI----IQYANG-----IVDFQSENCIG 135

Query: 106 CGLCQEACPVDAI 118
           CG C   CP +  
Sbjct: 136 CGYCIAGCPFNIP 148



 Score = 29.8 bits (66), Expect = 0.29
 Identities = 9/16 (56%), Positives = 10/16 (62%)

Query: 98  IDMIKCIYCGLCQEAC 113
           ID+  CI C  CQ AC
Sbjct: 34  IDVSTCIGCKACQVAC 49


>2v2k_A Ferredoxin; iron, 3Fe-4S, 4Fe-4S, transport, iron-sulfur,
           mycobacterium tuberculosis, Fe-S cluster, metal-binding,
           electron transfer; 1.6A {Mycobacterium smegmatis}
          Length = 105

 Score = 43.6 bits (102), Expect = 2e-05
 Identities = 19/83 (22%), Positives = 27/83 (32%), Gaps = 17/83 (20%)

Query: 60  EERCIACK--LCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
            E C+  K   C   CP   I   +               I   +C+ CG C+  CPV+A
Sbjct: 5   AEPCVDVKDKACIEECPVDCIYEGAR-----------MLYIHPDECVDCGACEPVCPVEA 53

Query: 118 IVEGPNFEFATETRQELYYDKER 140
           I     +E     +   Y     
Sbjct: 54  IY----YEDDVPDQWSSYAQANA 72


>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur,
           iron-sulfur cluster, pyruvate catabolism, TPP-dependent
           enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP:
           c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB:
           1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A*
           2pda_A* 2uza_A*
          Length = 1231

 Score = 43.4 bits (102), Expect = 2e-05
 Identities = 29/122 (23%), Positives = 46/122 (37%), Gaps = 33/122 (27%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI------------------T 79
           F  G++    RG  A+       E CI C  C  +CP  AI                   
Sbjct: 664 FPLGTSQFEKRGV-AINVPQWVPENCIQCNQCAFVCPHSAILPVLAKEEELVGAPANFTA 722

Query: 80  IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV--DAIV----------EGPNFEFA 127
           +E+  +   G +  ++  I+ + C+ CG C + CP    A+V          + PN E+A
Sbjct: 723 LEAKGKELKGYKFRIQ--INTLDCMGCGNCADICPPKEKALVMQPLDTQRDAQVPNLEYA 780

Query: 128 TE 129
             
Sbjct: 781 AR 782



 Score = 33.0 bits (75), Expect = 0.037
 Identities = 18/127 (14%), Positives = 28/127 (22%), Gaps = 4/127 (3%)

Query: 17  VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRY-PNGEERCIA---CKLCEAI 72
           V      +     +     YP          + E     +  N  +  +     KL  + 
Sbjct: 598 VKMNTDAVDQAVTSLQEFKYPDSWKDAPAETKAEPMTNEFFKNVVKPILTQQGDKLPVSA 657

Query: 73  CPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132
             A         +                 CI C  C   CP  AI+     E       
Sbjct: 658 FEADGRFPLGTSQFEKRGVAINVPQWVPENCIQCNQCAFVCPHSAILPVLAKEEELVGAP 717

Query: 133 ELYYDKE 139
             +   E
Sbjct: 718 ANFTALE 724


>1bc6_A 7-Fe ferredoxin; electron transport, iron-sulfur; NMR {Bacillus
           schlegelii} SCOP: d.58.1.2 PDB: 1bd6_A 1bqx_A 1bwe_A
          Length = 77

 Score = 43.1 bits (101), Expect = 3e-05
 Identities = 21/62 (33%), Positives = 24/62 (38%), Gaps = 13/62 (20%)

Query: 60  EERCIACKL--CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
            E CI  K   C  +CP   I                +Y ID   CI CG C+  CPV A
Sbjct: 5   TEPCIGTKDASCVEVCPVDCIHEGED-----------QYYIDPDVCIDCGACEAVCPVSA 53

Query: 118 IV 119
           I 
Sbjct: 54  IY 55



 Score = 28.1 bits (62), Expect = 0.97
 Identities = 11/23 (47%), Positives = 13/23 (56%)

Query: 60 EERCIACKLCEAICPAQAITIES 82
           + CI C  CEA+CP  AI  E 
Sbjct: 36 PDVCIDCGACEAVCPVSAIYHED 58


>1rof_A Ferredoxin; electron transport, iron-sulfur; NMR {Thermotoga
           maritima} SCOP: d.58.1.4 PDB: 1vjw_A
          Length = 60

 Score = 41.3 bits (96), Expect = 9e-05
 Identities = 12/59 (20%), Positives = 19/59 (32%), Gaps = 9/59 (15%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            + CI C +CE +CP      + G           +               ++CP  AI
Sbjct: 7   ADACIGCGVCENLCPDVFQLGDDGK---------AKVLQPETDLPCAKDAADSCPTGAI 56



 Score = 29.4 bits (65), Expect = 0.39
 Identities = 7/22 (31%), Positives = 9/22 (40%)

Query: 60 EERCIACKLCEAICPAQAITIE 81
          E      K     CP  AI++E
Sbjct: 38 ETDLPCAKDAADSCPTGAISVE 59



 Score = 27.9 bits (61), Expect = 1.1
 Identities = 8/24 (33%), Positives = 12/24 (50%)

Query: 95  RYDIDMIKCIYCGLCQEACPVDAI 118
           +  +D   CI CG+C+  CP    
Sbjct: 2   KVRVDADACIGCGVCENLCPDVFQ 25


>1dax_A Ferredoxin I; electron transport, electron-transfer protein, 4Fe-4S
           cluster; NMR {Desulfovibrio africanus} SCOP: d.58.1.4
           PDB: 1dfd_A 1fxr_A
          Length = 64

 Score = 41.2 bits (96), Expect = 1e-04
 Identities = 12/59 (20%), Positives = 20/59 (33%), Gaps = 7/59 (11%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           ++ CIAC+ C  I P          + +         D++           + CPV  I
Sbjct: 8   QDECIACESCVEIAPGAFAMDPEIEKAYV-------KDVEGASQEEVEEAMDTCPVQCI 59



 Score = 26.6 bits (58), Expect = 3.1
 Identities = 5/28 (17%), Positives = 6/28 (21%)

Query: 54 RRYPNGEERCIACKLCEAICPAQAITIE 81
                       +     CP Q I  E
Sbjct: 35 YVKDVEGASQEEVEEAMDTCPVQCIHWE 62



 Score = 25.8 bits (56), Expect = 5.4
 Identities = 7/30 (23%), Positives = 13/30 (43%)

Query: 95  RYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124
           ++ +D  +CI C  C E  P    ++    
Sbjct: 3   KFYVDQDECIACESCVEIAPGAFAMDPEIE 32


>2ivf_B Ethylbenzene dehydrogenase beta-subunit; anaerobic hydrocarbon
           degradation, MOCO, Fe/S cluster, MO- bismgd enzyme, DMSO
           reductase family; HET: MES MGD MD1 HEM; 1.88A {Azoarcus
           SP}
          Length = 352

 Score = 38.3 bits (88), Expect = 8e-04
 Identities = 14/63 (22%), Positives = 18/63 (28%), Gaps = 4/63 (6%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
           +ERC   + C   CP +AI           T          I+      C   CP     
Sbjct: 181 QERCKGHRHCVEACPYKAIYFNP----VSQTSEKCILCYPRIEKGIANACNRQCPGRVRA 236

Query: 120 EGP 122
            G 
Sbjct: 237 FGY 239



 Score = 32.9 bits (74), Expect = 0.041
 Identities = 20/59 (33%), Positives = 23/59 (38%), Gaps = 11/59 (18%)

Query: 62  RCIAC--KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            C  C    C A CP  AI      R  +G    V  D +  +C     C EACP  AI
Sbjct: 150 MCNHCTNPACLAACPTGAIYK----REDNGI---VLVDQE--RCKGHRHCVEACPYKAI 199



 Score = 27.9 bits (61), Expect = 1.2
 Identities = 8/17 (47%), Positives = 10/17 (58%)

Query: 98  IDMIKCIYCGLCQEACP 114
           ID+ KC+ C  C  AC 
Sbjct: 23  IDLNKCLGCQTCTVACK 39


>1ti6_B Pyrogallol hydroxytransferase small subunit; molybdenum binding
           enzyme, MGD-cofactors, DMSO-reductase family,
           4Fe-4S-cluster; HET: MGD BTT; 2.00A {Pelobacter
           acidigallici} SCOP: b.3.5.1 d.58.1.5 PDB: 1ti2_B*
           1ti4_B* 1vld_N* 1vle_N* 1vlf_N*
          Length = 274

 Score = 37.4 bits (86), Expect = 0.001
 Identities = 6/57 (10%), Positives = 8/57 (14%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           +    K     CP   +                    D         C   C     
Sbjct: 98  KAKGKKELLDTCPYGVMYWNEEENVAQKCTMCAHLLDDESWAPKMPRCAHNCGSFVY 154



 Score = 29.0 bits (64), Expect = 0.54
 Identities = 7/16 (43%), Positives = 8/16 (50%)

Query: 98  IDMIKCIYCGLCQEAC 113
           ID+ KC  C  C   C
Sbjct: 8   IDVAKCQDCNNCFMGC 23



 Score = 27.0 bits (59), Expect = 1.9
 Identities = 16/88 (18%), Positives = 21/88 (23%), Gaps = 7/88 (7%)

Query: 35  NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGT---- 90
                 G T+   RG           ER    +      P   +  E+ P    G     
Sbjct: 28  ELNEWPGYTASMQRGHR--WMNIERRERGTYPRNDINYRPTPCMHCENAPCVAKGNGAVY 85

Query: 91  -RRTVRYDIDMIKCIYCGLCQEACPVDA 117
            R      ID  K        + CP   
Sbjct: 86  QREDGIVLIDPEKAKGKKELLDTCPYGV 113



 Score = 25.1 bits (54), Expect = 7.7
 Identities = 10/65 (15%), Positives = 16/65 (24%), Gaps = 12/65 (18%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK------------CIYCGL 108
            +C  C  C   C  +    E         R     +I+  +               C  
Sbjct: 11  AKCQDCNNCFMGCMDEHELNEWPGYTASMQRGHRWMNIERRERGTYPRNDINYRPTPCMH 70

Query: 109 CQEAC 113
           C+ A 
Sbjct: 71  CENAP 75


>3mm5_B Sulfite reductase, dissimilatory-type subunit BET;
           alpha-beta-protein, oxidoreductase; HET: SRM; 1.80A
           {Archaeoglobus fulgidus} PDB: 3c7b_B* 3mm6_B* 3mm7_B*
           3mm8_B* 3mm9_B* 3mma_B* 3mmb_B* 3mmc_B*
          Length = 366

 Score = 37.4 bits (86), Expect = 0.001
 Identities = 15/62 (24%), Positives = 23/62 (37%), Gaps = 9/62 (14%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
             +        A CP  A+     P   + T       +D+ KC+YCG C   CP   + 
Sbjct: 207 IRKTCEIPSTVAACPTGALK----PDMKNKT-----IKVDVEKCMYCGNCYTMCPGMPLF 257

Query: 120 EG 121
           + 
Sbjct: 258 DP 259


>1h0h_B Formate dehydrogenase (small subunit); tungsten selenium formate
           dehydrogenase, selenocysteine, molybdopterin, MGD,
           iron-sulphur cluster; HET: 2MD MGD EPE; 1.8A
           {Desulfovibrio gigas} SCOP: d.58.1.5
          Length = 214

 Score = 37.1 bits (85), Expect = 0.002
 Identities = 16/114 (14%), Positives = 25/114 (21%), Gaps = 16/114 (14%)

Query: 45  PRFRGEHALRRYPNG-------EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97
                   +     G        +     +   + CP       +               
Sbjct: 85  DMEDESAIIHDDATGCVLFTPKTKDLEDYESVISACPYDVPRKVAESNQMAKCD----MC 140

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQEL-----YYDKERLLNNGD 146
           ID I       C  +CP  A+  G   E        L      Y   +L +  D
Sbjct: 141 IDRITNGLRPACVTSCPTGAMNFGDLSEMEAMASARLAEIKAAYSDAKLCDPDD 194



 Score = 26.7 bits (58), Expect = 2.7
 Identities = 7/16 (43%), Positives = 9/16 (56%)

Query: 98  IDMIKCIYCGLCQEAC 113
           +D  +C  C  CQ AC
Sbjct: 6   VDTTRCTACRGCQVAC 21


>3i9v_3 NADH-quinone oxidoreductase subunit 3; electron transport,
           respiratory chain, 4Fe- 4S, cell membrane, flavoprotein,
           FMN, iron; HET: FMN; 3.10A {Thermus thermophilus HB8}
           PDB: 2fug_3* 3iam_3* 3ias_3*
          Length = 783

 Score = 36.2 bits (82), Expect = 0.003
 Identities = 16/92 (17%), Positives = 25/92 (27%), Gaps = 1/92 (1%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCI CK C                        +      +   + G   + CPV A+++
Sbjct: 179 ERCIHCKRCVRYFEEVPGDEVLDFIERGV-HTFIGTMDFGLPSGFSGNITDICPVGALLD 237

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEI 152
                 A     E       L   G    ++ 
Sbjct: 238 LTARFRARNWEMEETPTTCALCPVGCGITADT 269



 Score = 27.0 bits (58), Expect = 2.5
 Identities = 5/18 (27%), Positives = 8/18 (44%)

Query: 96  YDIDMIKCIYCGLCQEAC 113
             +D  +CI+C  C    
Sbjct: 174 VILDRERCIHCKRCVRYF 191


>3or1_B Sulfite reductase beta; dissimilatory sulfite reductase, sulfate
           reduction, oxidored sulfite reduction; HET: SRM; 1.76A
           {Desulfovibrio gigas} PDB: 3or2_B* 2v4j_B*
          Length = 386

 Score = 35.8 bits (82), Expect = 0.005
 Identities = 19/81 (23%), Positives = 31/81 (38%), Gaps = 2/81 (2%)

Query: 49  GEHALRRYPNGEERCIACKLCEA-ICPAQAITIESGPRCHD-GTRRTVRYDIDMIKCIYC 106
           G   + R P   +     +LCE  +  A   T    P   +   ++     I+  +C+YC
Sbjct: 202 GLVGIHRKPPMIDHENLAELCEIPLAVAACPTAAVKPITAEVNGQKVKSVAINNDRCMYC 261

Query: 107 GLCQEACPVDAIVEGPNFEFA 127
           G C   CP   + +G     A
Sbjct: 262 GNCYTMCPALPLSDGTGDGIA 282


>3or1_A Sulfite reductase alpha; dissimilatory sulfite reductase, sulfate
           reduction, oxidored sulfite reduction; HET: SRM; 1.76A
           {Desulfovibrio gigas} PDB: 3or2_A* 2v4j_A*
          Length = 437

 Score = 35.0 bits (80), Expect = 0.009
 Identities = 20/115 (17%), Positives = 35/115 (30%), Gaps = 9/115 (7%)

Query: 50  EHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR--TVRYDIDMIKCIYCG 107
           + A++ Y  GE +  A            I  E    C  G     +    ID   C  C 
Sbjct: 248 QEAVKAYVGGEFKPNAGAHAGRDWGKFDIEAEVVGLCPTGCMTYESGTLSIDNKNCTRCM 307

Query: 108 LCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPY 162
            C    P    +         E    +    +  + +G +  S ++  I  + P+
Sbjct: 308 HCINTMPRALKI-------GDERGASILVGAKAPVLDGAQMGSLLIPFIAAEEPF 355


>3c7b_B Sulfite reductase, dissimilatory-type subunit beta; alpha/beta
           fold, 4Fe-4S, heme, iron, iron-sulfur, membrane,
           metal-binding; HET: SRM; 2.00A {Archaeoglobus fulgidus}
           SCOP: d.58.1.5 d.58.36.2 d.134.1.1
          Length = 366

 Score = 34.6 bits (79), Expect = 0.011
 Identities = 20/83 (24%), Positives = 31/83 (37%), Gaps = 11/83 (13%)

Query: 47  FRGEHALRRYPNGEERCIACKLCEAI--CPAQAITIESGPRCHDGTRRTVRYDIDMIKCI 104
             G H     PN E     C++   +  CP  A+  +          +     +D+ KC+
Sbjct: 192 IVGIHRTPPIPNDEAIRKTCEIPSTVAACPTGALKPD---------MKNKTIKVDVEKCM 242

Query: 105 YCGLCQEACPVDAIVEGPNFEFA 127
           YCG C   CP   + +  N   A
Sbjct: 243 YCGNCYTMCPGMPLFDPENDGAA 265


>7fd1_A FD1, protein (7-Fe ferredoxin I); electron transport, iron-sulfur;
           1.30A {Azotobacter vinelandii} SCOP: d.58.1.2 PDB:
           1fda_A 1fdb_A 1fer_A 1axq_A 5fd1_A 6fdr_A 6fd1_A 7fdr_A
           1frh_A 1fri_A 1fdd_A 1frl_A 1d3w_A 1frm_A 1frx_A 1g6b_A
           1pc4_A 1frj_A 2fd2_A 1fd2_A ...
          Length = 106

 Score = 34.3 bits (78), Expect = 0.012
 Identities = 17/62 (27%), Positives = 21/62 (33%), Gaps = 13/62 (20%)

Query: 60  EERCIACKL--CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
            + CI CK   C  +CP                       I   +CI C LC+  CP  A
Sbjct: 5   TDNCIKCKYTDCVEVCPVDCFYEGPN-----------FLVIHPDECIDCALCEPECPAQA 53

Query: 118 IV 119
           I 
Sbjct: 54  IF 55



 Score = 25.8 bits (56), Expect = 4.9
 Identities = 14/25 (56%), Positives = 14/25 (56%), Gaps = 2/25 (8%)

Query: 102 KCIYC--GLCQEACPVDAIVEGPNF 124
            CI C    C E CPVD   EGPNF
Sbjct: 7   NCIKCKYTDCVEVCPVDCFYEGPNF 31


>3c8y_A Iron hydrogenase 1; dithiomethylether, H-cluster, 4Fe-4S,
           iron-sulfur, metal-binding, oxidoreductase; HET: HCN;
           1.39A {Clostridium pasteurianum} SCOP: c.96.1.1 d.15.4.2
           d.58.1.5 PDB: 1c4c_A* 1c4a_A* 1feh_A*
          Length = 574

 Score = 33.5 bits (76), Expect = 0.023
 Identities = 18/71 (25%), Positives = 25/71 (35%), Gaps = 3/71 (4%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD---IDMIKCIYCGLCQEACPVD 116
             +C+ C  C   C     T        +G       D    D   C+ CG C  ACPV 
Sbjct: 144 RTKCLLCGRCVNACGKNTETYAMKFLNKNGKTIIGAEDEKCFDDTNCLLCGQCIIACPVA 203

Query: 117 AIVEGPNFEFA 127
           A+ E  + +  
Sbjct: 204 ALSEKSHMDRV 214


>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur
           cluster, adenosine diphosphate, nucleotide-binding; HET:
           ADP; 2.80A {Pyrococcus abyssi}
          Length = 607

 Score = 33.5 bits (76), Expect = 0.023
 Identities = 16/63 (25%), Positives = 22/63 (34%), Gaps = 8/63 (12%)

Query: 60  EERC----IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
            ++C        LCE +CP        G           +  I    C  CG+C   CP 
Sbjct: 26  YDKCNPDKCGHFLCERVCPV----NRMGGEAIIIDEENYKPIIQEASCTGCGICVHKCPF 81

Query: 116 DAI 118
           +AI
Sbjct: 82  NAI 84



 Score = 31.1 bits (70), Expect = 0.14
 Identities = 10/25 (40%), Positives = 13/25 (52%)

Query: 60 EERCIACKLCEAICPAQAITIESGP 84
          E  C  C +C   CP  AI+I + P
Sbjct: 66 EASCTGCGICVHKCPFNAISIVNLP 90


>2v4j_A Sulfite reductase, dissimilatory-type subunit alpha; dissimilatory
           sulfite reductase, complex, siroheme, oxidoreductase;
           HET: SRM; 2.10A {Desulfovibrio vulgaris} SCOP: d.58.1.5
           d.58.36.2 d.134.1.1
          Length = 437

 Score = 32.2 bits (73), Expect = 0.051
 Identities = 11/72 (15%), Positives = 22/72 (30%), Gaps = 15/72 (20%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
            G H+ R +     +          CP++ +  +             +  ID  +C+ C 
Sbjct: 263 AGAHSGRDWG----KFDIEAEVVNRCPSKCMKWDGS-----------KLSIDNKECVRCM 307

Query: 108 LCQEACPVDAIV 119
            C    P    +
Sbjct: 308 HCINTMPRALHI 319


>2v4j_B Sulfite reductase, dissimilatory-type subunit beta; dissimilatory
           sulfite reductase, complex, siroheme, oxidoreductase;
           HET: SRM; 2.10A {Desulfovibrio vulgaris} SCOP: d.58.1.5
           d.58.36.2 d.134.1.1
          Length = 381

 Score = 32.3 bits (73), Expect = 0.059
 Identities = 17/81 (20%), Positives = 27/81 (33%), Gaps = 2/81 (2%)

Query: 49  GEHALRRYPNGEERCIACKLCE--AICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYC 106
           G   + R P   +     +LCE      +         +   G ++     I   +C+YC
Sbjct: 202 GVVGIHRKPPMIDHEWTDQLCEIPLAVASCPTAAVRPTKLEIGDKKVNTIAIKNERCMYC 261

Query: 107 GLCQEACPVDAIVEGPNFEFA 127
           G C   CP   I +G      
Sbjct: 262 GNCYTMCPALPISDGEGDGVV 282


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 31.1 bits (70), Expect = 0.11
 Identities = 11/64 (17%), Positives = 18/64 (28%), Gaps = 28/64 (43%)

Query: 13  LKEFVGAF---FLC-------------------------LRYFFKAKTTINYPFEKGSTS 44
           L   +  F   +L                          ++ +  A+     PF+K S S
Sbjct: 84  LNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNS 143

Query: 45  PRFR 48
             FR
Sbjct: 144 ALFR 147



 Score = 29.5 bits (66), Expect = 0.37
 Identities = 24/109 (22%), Positives = 37/109 (33%), Gaps = 43/109 (39%)

Query: 76  QAITI--ESGPRCHDGTRRT-----VRYD-ID--------M--IKCIYCGLCQEACPVDA 117
           +AIT+    G RC++    T     +  D ++        M  I      L QE   V  
Sbjct: 298 KAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSIS----NLTQEQ--VQD 351

Query: 118 IVEGPNFEFATETRQELYYDKERL---LNNGDRWESEIVRNIVTDSPYR 163
            V         +T   L   K ++   L NG        +N+V   P +
Sbjct: 352 YVN--------KTNSHLPAGK-QVEISLVNGA-------KNLVVSGPPQ 384


>2vpz_B NRFC protein; oxidoreductase, molybdopterin guanine dinucleotide,
           iron-sulfur, metal-binding, molybdopterin; HET: MGD;
           2.4A {Thermus thermophilus} PDB: 2vpx_B* 2vpw_B* 2vpy_B*
          Length = 195

 Score = 30.7 bits (68), Expect = 0.19
 Identities = 20/88 (22%), Positives = 27/88 (30%), Gaps = 2/88 (2%)

Query: 45  PRFRGEHALRRYPNGEERCIACKLCEAICP--AQAITIESGPRCHDGTRRTVRYDIDMIK 102
           P       +R    GE   +  +     C        +   P       +     +D  K
Sbjct: 30  PPGVFNLWIREREVGEYPNLVVEFRPEQCLHCENPPCVPVCPTGASYQTKDGLVLVDPKK 89

Query: 103 CIYCGLCQEACPVDAIVEGPNFEFATET 130
           CI CG C  ACP DA    P    +  T
Sbjct: 90  CIACGACIAACPYDARYLHPAGYVSKCT 117



 Score = 29.9 bits (66), Expect = 0.27
 Identities = 11/65 (16%), Positives = 18/65 (27%), Gaps = 7/65 (10%)

Query: 61  ERCIACKLCEAICPA-----QAITIESGPRCHDGTRRTVRYDIDMIKCIYC--GLCQEAC 113
             C+ C  C   C         +          G    +  +    +C++C    C   C
Sbjct: 11  SLCVGCAACAVACKMENEVPPGVFNLWIREREVGEYPNLVVEFRPEQCLHCENPPCVPVC 70

Query: 114 PVDAI 118
           P  A 
Sbjct: 71  PTGAS 75



 Score = 28.7 bits (63), Expect = 0.66
 Identities = 7/18 (38%), Positives = 10/18 (55%)

Query: 98  IDMIKCIYCGLCQEACPV 115
           ID+  C+ C  C  AC +
Sbjct: 8   IDLSLCVGCAACAVACKM 25



 Score = 25.3 bits (54), Expect = 6.7
 Identities = 14/62 (22%), Positives = 20/62 (32%), Gaps = 5/62 (8%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ++CIAC  C A CP  A  +               +    ++      C E CP      
Sbjct: 88  KKCIACGACIAACPYDARYLHPAGY-----VSKCTFCAHRLEKGKVPACVETCPTYCRTF 142

Query: 121 GP 122
           G 
Sbjct: 143 GD 144


>3c7b_A Sulfite reductase, dissimilatory-type subunit alpha; alpha/beta
           fold, 4Fe-4S, heme, iron, iron-sulfur, membrane,
           metal-binding; HET: SRM; 2.00A {Archaeoglobus fulgidus}
           SCOP: d.58.1.5 d.58.36.2 d.134.1.1
          Length = 417

 Score = 28.7 bits (64), Expect = 0.60
 Identities = 10/60 (16%), Positives = 14/60 (23%), Gaps = 11/60 (18%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
                    +CP  AI  +                ID  +C+ C  C    P        
Sbjct: 256 MDIENEVVKLCPTGAIKWDGK-----------ELTIDNRECVRCMHCINKMPKALKPGDE 304


>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG
           FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8
           d.58.1.6 PDB: 2gmj_A*
          Length = 584

 Score = 28.5 bits (62), Expect = 0.71
 Identities = 7/17 (41%), Positives = 10/17 (58%)

Query: 63  CIACKLCEAICPAQAIT 79
           C+ CK C+   P+Q I 
Sbjct: 553 CVHCKTCDIKDPSQNIN 569



 Score = 25.0 bits (53), Expect = 7.4
 Identities = 14/66 (21%), Positives = 21/66 (31%), Gaps = 18/66 (27%)

Query: 69  CEAICPAQA---ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV------ 119
            +  CPA     + +E G           R  I+   C++C  C    P   I       
Sbjct: 524 EQRFCPAGVYEFVPLEQGDG--------FRLQINAQNCVHCKTCDIKDPSQNINWVVPEG 575

Query: 120 -EGPNF 124
             GP +
Sbjct: 576 GGGPAY 581


>3mm5_A Sulfite reductase, dissimilatory-type subunit ALP;
           alpha-beta-protein, oxidoreductase; HET: SRM; 1.80A
           {Archaeoglobus fulgidus} PDB: 3mm6_A* 3mm7_A* 3mm8_A*
           3mm9_A* 3mma_A* 3mmb_A* 3mmc_A* 3c7b_A*
          Length = 418

 Score = 28.4 bits (63), Expect = 0.74
 Identities = 9/66 (13%), Positives = 17/66 (25%), Gaps = 1/66 (1%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
            + +    A K   +    +   ++  P             ID  +C+ C  C    P  
Sbjct: 241 DDIKVDQEAVKEYASWMDIENEVVKLCPT-GAIKWDGKELTIDNRECVRCMHCINKMPKA 299

Query: 117 AIVEGP 122
                 
Sbjct: 300 LKPGDE 305


>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
           transcription factor, DNA-binding, DNA-directed RNA
           polymerase; 4.30A {Saccharomyces cerevisiae}
          Length = 197

 Score = 26.8 bits (59), Expect = 2.6
 Identities = 9/43 (20%), Positives = 12/43 (27%), Gaps = 10/43 (23%)

Query: 84  PRCHDGTRRT-VRYDI---DMIKCIYCGLCQEACPVDAIVEGP 122
           P C        +       D++ C  CGL      VD      
Sbjct: 25  PEC--KVYPPKIVERFSEGDVV-CALCGLVLSDKLVD---TRS 61


>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase,
           amidotransferase, ammonia assimilation, FMN, FAD, iron,
           3Fe-4S, 4Fe-4S, zymogen; HET: OMT FMN AKG FAD; 9.50A
           {Azospirillum brasilense}
          Length = 456

 Score = 26.6 bits (58), Expect = 2.8
 Identities = 8/19 (42%), Positives = 9/19 (47%), Gaps = 2/19 (10%)

Query: 103 CIYCG--LCQEACPVDAIV 119
           C  CG   CQ  CPV   +
Sbjct: 22  CSQCGVPFCQVHCPVSNNI 40



 Score = 25.5 bits (55), Expect = 5.9
 Identities = 14/78 (17%), Positives = 22/78 (28%), Gaps = 21/78 (26%)

Query: 61  ERCIACK--LCEAICPAQAITIESGPRCHDGTRRTVRYD--IDMIK------------CI 104
            RC  C    C+  CP         P     T    R +   ++ +            C 
Sbjct: 20  NRCSQCGVPFCQVHCPVSNNI----PDWLKLTSEG-RLEEAYEVSQATNNFPEICGRICP 74

Query: 105 YCGLCQEACPVDAIVEGP 122
              LC+  C ++    G 
Sbjct: 75  QDRLCEGNCVIEQSTHGA 92


>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone
           receptor/immune system complex; 3.80A {Homo sapiens}
           SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1
          Length = 897

 Score = 26.4 bits (57), Expect = 3.1
 Identities = 18/66 (27%), Positives = 21/66 (31%), Gaps = 9/66 (13%)

Query: 58  NGEERCIACKLCEAICP---AQAITIESGPRCHDGTRRTVRYDIDMIKCIYC------GL 108
              ERC     C+ +CP           G  CH           D  KC+ C      G 
Sbjct: 177 QFVERCWTHSHCQKVCPTICKSHGCTAEGLCCHSECLGNCSQPDDPTKCVACRNFYLDGR 236

Query: 109 CQEACP 114
           C E CP
Sbjct: 237 CVETCP 242


>1wyr_A RHO guanine nucleotide exchange factor 6; CH domain, all-alpha,
           NPPSFA, structural genomics, riken structural
           genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
          Length = 121

 Score = 25.7 bits (56), Expect = 4.8
 Identities = 10/59 (16%), Positives = 17/59 (28%), Gaps = 4/59 (6%)

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124
           CKL   + P         P+        +   +     +   +     P D +  G NF
Sbjct: 46  CKLINRLMPGSVEKFCLDPQTEADCINNINDFLKGCATLQVEIFD---PDD-LYSGVNF 100


>2bs2_B Quinol-fumarate reductase iron-sulfur subunit B; 2Fe-2S, 3Fe-4S,
           4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD
           HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.1.2.1
           d.15.4.2 PDB: 2bs3_B* 1e7p_B* 1qlb_B* 2bs4_B*
          Length = 241

 Score = 25.6 bits (55), Expect = 6.0
 Identities = 14/80 (17%), Positives = 24/80 (30%), Gaps = 17/80 (21%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPR------------CHDGTRRTVRYDIDMI 101
            +     +RCI C  C A C  + +  +                 HD       Y++   
Sbjct: 142 AQEVFELDRCIECGCCIAACGTKIMREDFVGAAGLNRVVRFMIDPHDERTDEDYYELIGD 201

Query: 102 K-----CIYCGLCQEACPVD 116
                 C+    C + CP +
Sbjct: 202 DDGVFGCMTLLACHDVCPKN 221


>3i9v_1 NADH-quinone oxidoreductase subunit 1; electron transport,
           respiratory chain, 4Fe- 4S, cell membrane, flavoprotein,
           FMN, iron; HET: FMN; 3.10A {Thermus thermophilus HB8}
           PDB: 2fug_1* 3iam_1* 3ias_1*
          Length = 438

 Score = 25.5 bits (55), Expect = 6.5
 Identities = 9/56 (16%), Positives = 15/56 (26%), Gaps = 1/56 (1%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG-LCQEACP 114
            E C  C  C        + + +      G  + V     ++  I     C  A  
Sbjct: 350 HESCGKCTPCREGVAGFMVNLFAKIGTGQGEEKDVENLEALLPLIEGRSFCPLADA 405


>1igr_A Protein (insulin-like growth factor receptor 1); hormone receptor,
           insulin receptor family; HET: NAG FUC BMA MAN; 2.60A
           {Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1
          Length = 478

 Score = 25.0 bits (54), Expect = 8.1
 Identities = 15/64 (23%), Positives = 25/64 (39%), Gaps = 9/64 (14%)

Query: 62  RCIACKLCEAICPA---QAITIESGPRCHDGTRRTVRYDIDMIKCIYC------GLCQEA 112
           RC     C+ +CP+   +    E+   CH     +     +   C+ C      G+C  A
Sbjct: 174 RCWTTNRCQKMCPSTCGKRACTENNECCHPECLGSCSAPDNDTACVACRHYYYAGVCVPA 233

Query: 113 CPVD 116
           CP +
Sbjct: 234 CPPN 237


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.328    0.143    0.465 

Gapped
Lambda     K      H
   0.267   0.0516    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,525,325
Number of extensions: 70433
Number of successful extensions: 419
Number of sequences better than 10.0: 1
Number of HSP's gapped: 341
Number of HSP's successfully gapped: 116
Length of query: 163
Length of database: 5,693,230
Length adjustment: 85
Effective length of query: 78
Effective length of database: 3,632,490
Effective search space: 283334220
Effective search space used: 283334220
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (24.7 bits)