HHsearch alignment for GI: 254780862 and conserved domain: MTH00065
>MTH00065 ND6 NADH dehydrogenase subunit 6; Provisional.
Probab=96.23 E-value=0.00077 Score=39.35 Aligned_cols=165 Identities=18% Similarity=0.210 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 99999999999999999724289999999999999999999808707999999999999999999999981731112123
Q gi|254780862|r 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86 (199)
Q Consensus 7 ~F~~~a~l~i~sal~vi~~kn~v~s~l~Li~~f~~vAgl~~lL~aeFla~~qIlVYvGAI~VLflFvIMll~~~~~~~~~ 86 (199)
T Consensus 4 ~~~ll~~~~v~G~v~VasnPSPyfgalgLV~~a~~gCg~l~~~GgsFlsLvLfLIYLGGMLVVFaYs~Alaae~yPe~-w 82 (172)
T MTH00065 4 LGFLGMLGLVVGLVAVASNPSPYFAALGLVLAAVCGCLVLVELGVSFLSLVLLLIYLGGMLVVFAYSASLAAEPYPEA-W 82 (172)
T ss_pred HHHHHHHHHHHEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCEEEEEEEEEEEEECCCCCC-C
T ss_conf 699999999632579998884578889999999744660121497089999999986986999999998980788820-1
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCCCCCCCCCCCCCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 3221001246899999999-999997766215666554344611389999-99987526999999999999999999999
Q gi|254780862|r 87 RKKRGFLGSFFIGILAAEL-IVCASNFMVFSAEGELSRLVFKGNNVENIG-KVLYTQYAYPLEISGFILLLSMIGAIVLM 164 (199)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG-~~L~t~y~~~fel~sviLLvamiGAi~La 164 (199)
T Consensus 83 ~~~~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~Gv~~lY~~Gg~~L~v~gw~LlltLFVVLel~ 161 (172)
T MTH00065 83 GSWSV-LVYVVFYLLVLILGYILFGCNFSVEFLFTNYDTEFSVVGGDWGGVGLMYSFGGWFLVISGWVLLLTLFVVLEVT 161 (172)
T ss_pred CCCEE-EEEEEEEEEEEEEEEEEECCEECCCEEEEECCCCCEEEECCCEEEEEECCCCHHHHHHHHHHHHHHHHEEEEEE
T ss_conf 04189-99999999999999999821581257999859855399016879964315988997899999999862899996
Q ss_pred HHCCCCCCC
Q ss_conf 750588754
Q gi|254780862|r 165 LRHRRDIKR 173 (199)
Q Consensus 165 ~~~~~~~kr 173 (199)
T Consensus 162 RG~~rG~LR 170 (172)
T MTH00065 162 RGLSRGSLR 170 (172)
T ss_pred ECCCEEEEE
T ss_conf 348710780