HHsearch alignment for GI: 254780862 and conserved domain: MTH00065

>MTH00065 ND6 NADH dehydrogenase subunit 6; Provisional.
Probab=96.23  E-value=0.00077  Score=39.35  Aligned_cols=165  Identities=18%  Similarity=0.210  Sum_probs=94.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf             99999999999999999724289999999999999999999808707999999999999999999999981731112123
Q gi|254780862|r    7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP   86 (199)
Q Consensus         7 ~F~~~a~l~i~sal~vi~~kn~v~s~l~Li~~f~~vAgl~~lL~aeFla~~qIlVYvGAI~VLflFvIMll~~~~~~~~~   86 (199)
T Consensus         4 ~~~ll~~~~v~G~v~VasnPSPyfgalgLV~~a~~gCg~l~~~GgsFlsLvLfLIYLGGMLVVFaYs~Alaae~yPe~-w   82 (172)
T MTH00065          4 LGFLGMLGLVVGLVAVASNPSPYFAALGLVLAAVCGCLVLVELGVSFLSLVLLLIYLGGMLVVFAYSASLAAEPYPEA-W   82 (172)
T ss_pred             HHHHHHHHHHHEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCEEEEEEEEEEEEECCCCCC-C
T ss_conf             699999999632579998884578889999999744660121497089999999986986999999998980788820-1


Q ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCCCCCCCCCCCCCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             3221001246899999999-999997766215666554344611389999-99987526999999999999999999999
Q gi|254780862|r   87 RKKRGFLGSFFIGILAAEL-IVCASNFMVFSAEGELSRLVFKGNNVENIG-KVLYTQYAYPLEISGFILLLSMIGAIVLM  164 (199)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG-~~L~t~y~~~fel~sviLLvamiGAi~La  164 (199)
T Consensus        83 ~~~~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~Gv~~lY~~Gg~~L~v~gw~LlltLFVVLel~  161 (172)
T MTH00065         83 GSWSV-LVYVVFYLLVLILGYILFGCNFSVEFLFTNYDTEFSVVGGDWGGVGLMYSFGGWFLVISGWVLLLTLFVVLEVT  161 (172)
T ss_pred             CCCEE-EEEEEEEEEEEEEEEEEECCEECCCEEEEECCCCCEEEECCCEEEEEECCCCHHHHHHHHHHHHHHHHEEEEEE
T ss_conf             04189-99999999999999999821581257999859855399016879964315988997899999999862899996


Q ss_pred             HHCCCCCCC
Q ss_conf             750588754
Q gi|254780862|r  165 LRHRRDIKR  173 (199)
Q Consensus       165 ~~~~~~~kr  173 (199)
T Consensus       162 RG~~rG~LR  170 (172)
T MTH00065        162 RGLSRGSLR  170 (172)
T ss_pred             ECCCEEEEE
T ss_conf             348710780