HHsearch alignment for GI: 254780862 and conserved domain: MTH00115
>MTH00115 ND6 NADH dehydrogenase subunit 6; Provisional.
Probab=95.64 E-value=0.0014 Score=38.00 Aligned_cols=166 Identities=20% Similarity=0.280 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 99999999999999999724289999999999999999999808707999999999999999999999981731112123
Q gi|254780862|r 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86 (199)
Q Consensus 7 ~F~~~a~l~i~sal~vi~~kn~v~s~l~Li~~f~~vAgl~~lL~aeFla~~qIlVYvGAI~VLflFvIMll~~~~~~~~~ 86 (199)
T Consensus 4 ~~~l~~~~~v~G~v~VasnPSPyfgalgLV~~a~~gC~il~~~GgsFlsLvLfLIYLGGMLVVFaYs~Alaae~yPe~-w 82 (174)
T MTH00115 4 FVFLLGVCFVLGVVGVASNPSPYYGVVSLVFAAVFGCGLLVSLGGSFVSLVLFLVYLGGMLVVFAYSVSLAADPYPEA-W 82 (174)
T ss_pred HHHHHHHHHHHEEEEEECCCCHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHCCEEEEEEEEEEEECCCCCCC-C
T ss_conf 799999999733678998896478779999988603432011497389999999986887999999989971787611-3
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHCCCCCC-CCCCCCCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 3221001246-8999999999999977662156665-54344611389999-9998752699999999999999999999
Q gi|254780862|r 87 RKKRGFLGSF-FIGILAAELIVCASNFMVFSAEGEL-SRLVFKGNNVENIG-KVLYTQYAYPLEISGFILLLSMIGAIVL 163 (199)
Q Consensus 87 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~iG-~~L~t~y~~~fel~sviLLvamiGAi~L 163 (199)
T Consensus 83 g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~Gv~~lY~~Gg~~L~~~gw~LlltLfVVLel 162 (174)
T MTH00115 83 GSWGVVGYVVGYVLVVLVLGVVLGGLWGMWGFGVVTVDAGGLFVVRLDFSGVSLFYSSGGGGLLVCGWGLLLTLFVVLEL 162 (174)
T ss_pred CCCEEEEEEEEEEEEEEEEEEEEECCCCCEEEEEEEECCCEEEEEECCCEEEEHHHHCCHHHHHHHHHHHHHHHHEEEEE
T ss_conf 78388899999999999999999632452032278646980499902680851103388999999999999987456999
Q ss_pred HHHCCCCCCC
Q ss_conf 9750588754
Q gi|254780862|r 164 MLRHRRDIKR 173 (199)
Q Consensus 164 a~~~~~~~kr 173 (199)
T Consensus 163 ~RG~~rG~lR 172 (174)
T MTH00115 163 VRGLSRGALR 172 (174)
T ss_pred ECCCCCEEEC
T ss_conf 3466511477