HHsearch alignment for GI: 254780862 and conserved domain: MTH00115

>MTH00115 ND6 NADH dehydrogenase subunit 6; Provisional.
Probab=95.64  E-value=0.0014  Score=38.00  Aligned_cols=166  Identities=20%  Similarity=0.280  Sum_probs=95.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf             99999999999999999724289999999999999999999808707999999999999999999999981731112123
Q gi|254780862|r    7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP   86 (199)
Q Consensus         7 ~F~~~a~l~i~sal~vi~~kn~v~s~l~Li~~f~~vAgl~~lL~aeFla~~qIlVYvGAI~VLflFvIMll~~~~~~~~~   86 (199)
T Consensus         4 ~~~l~~~~~v~G~v~VasnPSPyfgalgLV~~a~~gC~il~~~GgsFlsLvLfLIYLGGMLVVFaYs~Alaae~yPe~-w   82 (174)
T MTH00115          4 FVFLLGVCFVLGVVGVASNPSPYYGVVSLVFAAVFGCGLLVSLGGSFVSLVLFLVYLGGMLVVFAYSVSLAADPYPEA-W   82 (174)
T ss_pred             HHHHHHHHHHHEEEEEECCCCHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHCCEEEEEEEEEEEECCCCCCC-C
T ss_conf             799999999733678998896478779999988603432011497389999999986887999999989971787611-3


Q ss_pred             HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHCCCCCC-CCCCCCCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             3221001246-8999999999999977662156665-54344611389999-9998752699999999999999999999
Q gi|254780862|r   87 RKKRGFLGSF-FIGILAAELIVCASNFMVFSAEGEL-SRLVFKGNNVENIG-KVLYTQYAYPLEISGFILLLSMIGAIVL  163 (199)
Q Consensus        87 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~iG-~~L~t~y~~~fel~sviLLvamiGAi~L  163 (199)
T Consensus        83 g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~Gv~~lY~~Gg~~L~~~gw~LlltLfVVLel  162 (174)
T MTH00115         83 GSWGVVGYVVGYVLVVLVLGVVLGGLWGMWGFGVVTVDAGGLFVVRLDFSGVSLFYSSGGGGLLVCGWGLLLTLFVVLEL  162 (174)
T ss_pred             CCCEEEEEEEEEEEEEEEEEEEEECCCCCEEEEEEEECCCEEEEEECCCEEEEHHHHCCHHHHHHHHHHHHHHHHEEEEE
T ss_conf             78388899999999999999999632452032278646980499902680851103388999999999999987456999


Q ss_pred             HHHCCCCCCC
Q ss_conf             9750588754
Q gi|254780862|r  164 MLRHRRDIKR  173 (199)
Q Consensus       164 a~~~~~~~kr  173 (199)
T Consensus       163 ~RG~~rG~lR  172 (174)
T MTH00115        163 VRGLSRGALR  172 (174)
T ss_pred             ECCCCCEEEC
T ss_conf             3466511477