HHsearch alignment for GI: 254780862 and conserved domain: MTH00138
>MTH00138 ND6 NADH dehydrogenase subunit 6; Provisional.
Probab=96.50 E-value=0.00067 Score=39.67 Aligned_cols=165 Identities=13% Similarity=0.233 Sum_probs=96.9
Q ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 99999999999999999724289999999999999999999808707999999999999999999999981731112123
Q gi|254780862|r 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86 (199)
Q Consensus 7 ~F~~~a~l~i~sal~vi~~kn~v~s~l~Li~~f~~vAgl~~lL~aeFla~~qIlVYvGAI~VLflFvIMll~~~~~~~~~ 86 (199)
T Consensus 4 ~~~ll~~~~v~g~v~v~snPsPyygal~LV~~a~~gc~il~~~G~sFlsLVLfLIYLGGMLVVFaYs~Alaae~yPe~-~ 82 (173)
T MTH00138 4 LMSLLLFGLVLGLVAVASNPSPYFAALGLVVVAGVGCGVLVGHGGSFLSLVLFLIYLGGMLVVFAYSAALAAEPYPES-W 82 (173)
T ss_pred HHHHHHHHHHHEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCEEEEEEEEEEEECCCCCCC-C
T ss_conf 699999999852678987884678899999999866896863497189999999986886999998876544788843-5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCCCCCCCCCC--HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 322100124689999999999999776621-5666554344611--389999-999875269999999999999999999
Q gi|254780862|r 87 RKKRGFLGSFFIGILAAELIVCASNFMVFS-AEGELSRLVFKGN--NVENIG-KVLYTQYAYPLEISGFILLLSMIGAIV 162 (199)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~iG-~~L~t~y~~~fel~sviLLvamiGAi~ 162 (199)
T Consensus 83 ~~~~--v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~Gv~~lY~~Gg~~L~~~gw~LLltLfvVLe 160 (173)
T MTH00138 83 GSRS--VLGYVVMYLLGVVLAAGLFWGGWYEGSWVVVDELKEFSVLRGDVGGVALMYSSGGGMLVLCAWVLLLTLFVVLE 160 (173)
T ss_pred CCEE--EEEEEEEEEEEEEEEEEEEECCEECCEEEEEECCCCEEEEEEECEEEEEEECCCHHHHHHHHHHHHHHHHEEEE
T ss_conf 4707--99999999999999999995832343169998068507993016799986108799999999999998754699
Q ss_pred HHHHCCCCCCCC
Q ss_conf 997505887546
Q gi|254780862|r 163 LMLRHRRDIKRQ 174 (199)
Q Consensus 163 La~~~~~~~krq 174 (199)
T Consensus 161 l~RG~~rG~LRa 172 (173)
T MTH00138 161 LTRGLSRGALRA 172 (173)
T ss_pred EECCCCCCEEEE
T ss_conf 954577316703