HHsearch alignment for GI: 254780862 and conserved domain: PRK06433
>PRK06433 NADH dehydrogenase subunit J; Provisional.
Probab=99.97 E-value=3.2e-30 Score=182.84 Aligned_cols=86 Identities=29% Similarity=0.500 Sum_probs=82.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 95799999999999999999999724289999999999999999999808707999999999999999999999981731
Q gi|254780862|r 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 (199)
Q Consensus 1 M~~~~i~F~~~a~l~i~sal~vi~~kn~v~s~l~Li~~f~~vAgl~~lL~aeFla~~qIlVYvGAI~VLflFvIMll~~~ 80 (199)
T Consensus 2 m~~e~i~F~~~a~~~v~~al~vv~~rn~Vhsal~L~~~~~~vA~ly~ll~AeFla~vQilVY~GAi~vL~lF~vMLt~~~ 81 (89)
T PRK06433 2 MAYETLVFALFAILTVGFSVGVVLAKDVWHSALYLGIFLFSVAVLYIMLGASFLGVVQVLVYIGAVLILITFAVMLTKRQ 81 (89)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 71699999999999999998998722699999999999999999999926889999999999809999999999982877
Q ss_pred HHHHHH
Q ss_conf 112123
Q gi|254780862|r 81 IEVAEP 86 (199)
Q Consensus 81 ~~~~~~ 86 (199)
T Consensus 82 ~~~~~~ 87 (89)
T PRK06433 82 IGGEEI 87 (89)
T ss_pred CCCCCC
T ss_conf 676778