HHsearch alignment for GI: 254780862 and conserved domain: PRK06439
>PRK06439 NADH dehydrogenase subunit J; Provisional.
Probab=97.76 E-value=1.5e-05 Score=48.60 Aligned_cols=45 Identities=22% Similarity=0.485 Sum_probs=38.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 434461138999999987526999999999999999999999750
Q gi|254780862|r 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 (199)
Q Consensus 123 ~~~~~~~~~~~iG~~L~t~y~~~fel~sviLLvamiGAi~La~~~ 167 (199)
T Consensus 27 tFi~~sQnIs~iG~~lFntYivPFELlSviiV~aviGVMYva~~e 71 (72)
T PRK06439 27 TFIPVSQNISRIGTELFNTYIVPFELLSVIIVGAVIGVMYVAWGE 71 (72)
T ss_pred CEEECCCCHHHHHHHHHHHEEEHHHHHHHHHHHHHHEEEEEECCC
T ss_conf 257626427688788771003159999999999977368996068