HHsearch alignment for GI: 254780862 and conserved domain: PRK06638
>PRK06638 NADH dehydrogenase subunit J; Provisional.
Probab=100.00 E-value=0 Score=364.24 Aligned_cols=196 Identities=36% Similarity=0.655 Sum_probs=169.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 95799999999999999999999724289999999999999999999808707999999999999999999999981731
Q gi|254780862|r 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 (199)
Q Consensus 1 M~~~~i~F~~~a~l~i~sal~vi~~kn~v~s~l~Li~~f~~vAgl~~lL~aeFla~~qIlVYvGAI~VLflFvIMll~~~ 80 (199)
T Consensus 1 m~~e~i~F~i~a~l~i~sal~vv~~~npV~sal~Lv~~f~~vAgly~lL~AeFla~iqIiVYaGAI~VLfLFvIMll~~~ 80 (196)
T PRK06638 1 MTGEAIAFYIFALLAVLAALGVVTSRNPVHSALALILTFLSIAGLFFLLGAEFLGVLQIIVYVGAVMVLFLFVVMMLDVD 80 (196)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 92899999999999999989998657579999999999999999999965469999999999999999999999981662
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 11212332210012468999999999999977662156665543446113899999998752699999999999999999
Q gi|254780862|r 81 IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGA 160 (199)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~L~t~y~~~fel~sviLLvamiGA 160 (199)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~iG~~Lft~Y~lpFE~~silLLvAmIGA 159 (196)
T PRK06638 81 FDELRLQERRWLPPGVWIGFIILLELLLGII-VWAISGTADAGIPGTEGNTKAIGIVLFTDYLLPFELASVLLLVAMVGA 159 (196)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 4554200035899999999999999999999-862266665545667776999999999989999999999999999999
Q ss_pred HHHHHHCCCCCCCCCHHHHHHCCHHHCEEEEECCCCC
Q ss_conf 9999750588754689999500843156875279999
Q gi|254780862|r 161 IVLMLRHRRDIKRQDISKQLESNPDNSIVMVKVKSGK 197 (199)
Q Consensus 161 i~La~~~~~~~krq~~~~q~~~~~~~~i~~v~~~~~~ 197 (199)
T Consensus 160 IvLa~r~~~~~k~q~~~~q~~~~~~~~~~~~~~~~~~ 196 (196)
T PRK06638 160 IVLARRERKGVKRQNRSEQLARRKEEAVLLPKPGVGK 196 (196)
T ss_pred HHHHHCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCC
T ss_conf 9876114789876789999600613260568999997