Query gi|254780862|ref|YP_003065275.1| NADH dehydrogenase subunit J [Candidatus Liberibacter asiaticus str. psy62] Match_columns 199 No_of_seqs 111 out of 1690 Neff 6.6 Searched_HMMs 39220 Date Tue May 31 15:19:16 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780862.hhm -d /home/congqian_1/database/cdd/Cdd.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 PRK06638 NADH dehydrogenase su 100.0 0 0 364.2 23.0 196 1-197 1-196 (196) 2 MTH00057 ND6 NADH dehydrogenas 100.0 0 0 341.1 19.9 180 6-185 3-183 (184) 3 MTH00021 ND6 NADH dehydrogenas 100.0 0 0 321.3 17.8 174 10-183 1-186 (187) 4 CHL00016 ndhG NADH dehydrogena 100.0 0 0 279.3 19.0 165 3-167 7-177 (177) 5 COG0839 NuoJ NADH:ubiquinone o 100.0 4.2E-45 0 264.1 18.4 166 1-168 1-166 (166) 6 MTH00213 ND6 NADH dehydrogenas 100.0 1.8E-37 4.7E-42 222.2 16.1 168 3-170 7-311 (312) 7 PRK06433 NADH dehydrogenase su 100.0 3.2E-30 8.2E-35 182.8 11.2 86 1-86 2-87 (89) 8 pfam00499 Oxidored_q3 NADH-ubi 99.9 1.5E-21 3.9E-26 135.6 14.4 139 17-164 2-140 (140) 9 PRK12504 putative monovalent c 98.7 2.6E-06 6.8E-11 52.7 16.3 163 3-168 2-176 (178) 10 PRK12507 putative monovalent c 98.4 1.7E-05 4.3E-10 48.4 13.5 69 9-77 15-83 (334) 11 MTH00045 ND6 NADH dehydrogenas 98.3 1.8E-08 4.5E-13 64.6 -3.4 158 8-173 3-160 (161) 12 PRK08378 hypothetical protein; 98.3 1.3E-05 3.4E-10 48.9 10.8 80 1-80 1-80 (94) 13 PRK12645 monovalent cation/H+ 98.1 0.00039 9.9E-09 41.0 15.8 71 7-80 630-700 (800) 14 PRK12647 putative monovalent c 98.1 0.00011 2.8E-09 44.0 12.5 71 7-80 588-658 (761) 15 PRK12646 putative monovalent c 98.0 0.00029 7.3E-09 41.7 13.2 73 6-81 628-700 (800) 16 PRK06439 NADH dehydrogenase su 97.8 1.5E-05 3.9E-10 48.6 2.5 45 123-167 27-71 (72) 17 PRK12644 putative monovalent c 97.8 0.0021 5.4E-08 36.9 16.2 68 7-75 598-665 (968) 18 PRK12648 putative monovalent c 97.7 0.0021 5.2E-08 37.0 12.7 70 8-80 608-678 (950) 19 PRK12650 putative monovalent c 97.6 0.0028 7.2E-08 36.3 11.7 68 6-74 605-672 (969) 20 MTH00152 ND6 NADH dehydrogenas 97.5 0.0051 1.3E-07 34.9 14.6 151 12-168 7-159 (168) 21 PRK12649 putative monovalent c 97.4 0.0062 1.6E-07 34.4 13.9 71 7-80 632-702 (800) 22 TIGR00940 2a6301s01 monovalent 97.3 0.01 2.6E-07 33.2 15.6 168 5-176 629-809 (809) 23 MTH00015 ND6 NADH dehydrogenas 97.0 0.02 5E-07 31.7 13.3 144 10-169 5-149 (155) 24 COG1563 Predicted subunit of t 96.9 0.025 6.4E-07 31.1 10.6 73 3-75 7-79 (87) 25 MTH00214 ND6 NADH dehydrogenas 96.6 0.00029 7.4E-09 41.7 -1.2 158 10-173 3-160 (162) 26 PRK06280 hypothetical protein; 96.5 0.027 7E-07 30.9 8.9 73 4-76 2-74 (80) 27 MTH00138 ND6 NADH dehydrogenas 96.5 0.00067 1.7E-08 39.7 0.4 165 7-174 4-172 (173) 28 MTH00166 ND6 NADH dehydrogenas 96.4 0.056 1.4E-06 29.2 17.0 155 13-174 7-162 (164) 29 MTH00065 ND6 NADH dehydrogenas 96.2 0.00077 2E-08 39.4 -0.6 165 7-173 4-170 (172) 30 MTH00109 ND6 NADH dehydrogenas 95.9 0.00076 1.9E-08 39.4 -1.8 70 9-78 7-76 (175) 31 MTH00115 ND6 NADH dehydrogenas 95.6 0.0014 3.5E-08 38.0 -1.4 166 7-173 4-172 (174) 32 PRK05640 putative monovalent c 94.6 0.26 6.7E-06 25.6 14.4 65 9-74 4-68 (151) 33 MTH00064 ND6 NADH dehydrogenas 91.3 0.04 1E-06 30.0 -0.5 61 17-77 13-73 (151) 34 MTH00212 ND6 NADH dehydrogenas 91.1 0.92 2.3E-05 22.6 13.8 140 16-168 6-147 (154) 35 PRK07377 hypothetical protein; 88.9 1.4 3.6E-05 21.6 8.3 67 8-76 5-71 (185) 36 pfam03137 OATP Organic Anion T 85.6 2.2 5.7E-05 20.5 7.3 32 125-161 214-245 (582) 37 COG2851 CitM H+/citrate sympor 82.0 3.2 8.2E-05 19.7 6.1 41 136-179 172-212 (433) 38 TIGR00805 oat sodium-independe 81.7 1.9 5E-05 20.8 3.6 120 56-184 178-305 (723) 39 pfam05454 DAG1 Dystroglycan (D 80.6 2.1 5.3E-05 20.7 3.4 55 136-192 143-197 (290) 40 KOG3626 consensus 78.4 4.3 0.00011 19.0 5.1 45 121-170 305-349 (735) 41 pfam06664 MIG-14_Wnt-bd Wnt-bi 68.1 7.8 0.0002 17.5 11.5 65 46-110 107-172 (291) 42 PRK10532 threonine and homoser 66.2 8.5 0.00022 17.3 4.0 44 132-175 250-293 (293) 43 PRK10683 putrescine transporte 52.8 15 0.00038 16.0 8.4 44 127-170 263-312 (317) 44 PRK07375 putative monovalent c 48.9 17 0.00044 15.7 6.4 47 4-50 2-48 (112) 45 COG5416 Uncharacterized integr 48.1 17 0.00043 15.8 2.6 26 137-164 52-77 (98) 46 TIGR03663 conserved hypothetic 46.8 19 0.00048 15.5 18.8 59 3-68 121-179 (439) 47 PRK09497 potB spermidine/putre 46.6 19 0.00048 15.5 5.2 76 95-175 202-283 (285) 48 COG2991 Uncharacterized protei 38.6 26 0.00065 14.7 2.7 32 1-32 1-32 (77) 49 COG1006 MnhC Multisubunit Na+/ 37.2 27 0.00069 14.6 6.4 43 8-50 5-47 (115) 50 COG5116 RPN2 26S proteasome re 35.6 19 0.00049 15.4 1.4 28 131-158 712-739 (926) 51 pfam00124 Photo_RC Photosynthe 34.1 30 0.00077 14.3 5.0 44 142-185 147-198 (257) 52 COG4975 GlcU Putative glucose 27.7 39 0.001 13.7 2.1 161 14-181 38-214 (288) 53 KOG0510 consensus 27.4 22 0.00056 15.1 0.5 52 27-78 590-657 (929) 54 PRK11462 putative transporter; 27.1 40 0.001 13.7 16.5 20 60-79 327-346 (460) 55 pfam06365 CD34_antigen CD34/Po 26.5 41 0.0011 13.6 3.2 33 142-174 102-134 (202) 56 KOG2062 consensus 26.2 42 0.0011 13.6 3.4 30 131-160 715-744 (929) 57 KOG3817 consensus 25.7 43 0.0011 13.5 9.6 38 117-155 247-286 (452) 58 pfam04995 CcmD Heme exporter p 24.4 46 0.0012 13.4 1.7 27 141-167 5-31 (46) 59 TIGR01627 A_thal_3515 uncharac 23.0 33 0.00084 14.1 0.7 31 156-186 169-200 (238) 60 COG5336 Uncharacterized protei 22.6 48 0.0012 13.2 1.5 34 151-184 79-112 (116) 61 pfam05968 Bacillus_PapR Bacill 21.0 54 0.0014 13.0 1.9 36 148-183 5-43 (48) 62 PRK12489 anaerobic C4-dicarbox 20.9 54 0.0014 13.0 3.4 42 145-187 167-212 (440) 63 PRK13718 conjugal transfer pro 20.5 55 0.0014 12.9 3.3 18 63-80 54-71 (84) 64 TIGR01000 bacteriocin_acc bact 20.3 56 0.0014 12.9 2.3 25 142-166 20-44 (476) No 1 >PRK06638 NADH dehydrogenase subunit J; Provisional Probab=100.00 E-value=0 Score=364.24 Aligned_cols=196 Identities=36% Similarity=0.655 Sum_probs=169.8 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 95799999999999999999999724289999999999999999999808707999999999999999999999981731 Q gi|254780862|r 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 (199) Q Consensus 1 M~~~~i~F~~~a~l~i~sal~vi~~kn~v~s~l~Li~~f~~vAgl~~lL~aeFla~~qIlVYvGAI~VLflFvIMll~~~ 80 (199) |+.|.++||+++.++++|+++|+++||||||++||+.+|+++||+|++|||||+|++||+||+|||+|||+|+|||+|.+ T Consensus 1 m~~e~i~F~i~a~l~i~sal~vv~~~npV~sal~Lv~~f~~vAgly~lL~AeFla~iqIiVYaGAI~VLfLFvIMll~~~ 80 (196) T PRK06638 1 MTGEAIAFYIFALLAVLAALGVVTSRNPVHSALALILTFLSIAGLFFLLGAEFLGVLQIIVYVGAVMVLFLFVVMMLDVD 80 (196) T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC T ss_conf 92899999999999999989998657579999999999999999999965469999999999999999999999981662 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 11212332210012468999999999999977662156665543446113899999998752699999999999999999 Q gi|254780862|r 81 IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGA 160 (199) Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~L~t~y~~~fel~sviLLvamiGA 160 (199) .++.+.+.+++.+.....+............ ............+.+.+|++++|..|||+|.+|||++|++||+||||| T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~iG~~Lft~Y~lpFE~~silLLvAmIGA 159 (196) T PRK06638 81 FDELRLQERRWLPPGVWIGFIILLELLLGII-VWAISGTADAGIPGTEGNTKAIGIVLFTDYLLPFELASVLLLVAMVGA 159 (196) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 4554200035899999999999999999999-862266665545667776999999999989999999999999999999 Q ss_pred HHHHHHCCCCCCCCCHHHHHHCCHHHCEEEEECCCCC Q ss_conf 9999750588754689999500843156875279999 Q gi|254780862|r 161 IVLMLRHRRDIKRQDISKQLESNPDNSIVMVKVKSGK 197 (199) Q Consensus 161 i~La~~~~~~~krq~~~~q~~~~~~~~i~~v~~~~~~ 197 (199) ++||+|||++.||||+++|++||++|+++++|.+|+| T Consensus 160 IvLa~r~~~~~k~q~~~~q~~~~~~~~~~~~~~~~~~ 196 (196) T PRK06638 160 IVLARRERKGVKRQNRSEQLARRKEEAVLLPKPGVGK 196 (196) T ss_pred HHHHHCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCC T ss_conf 9876114789876789999600613260568999997 No 2 >MTH00057 ND6 NADH dehydrogenase subunit 6; Provisional Probab=100.00 E-value=0 Score=341.08 Aligned_cols=180 Identities=41% Similarity=0.607 Sum_probs=154.3 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH Q ss_conf 99999999999999999972428999999999999999999980870799999999999999999999998173111212 Q gi|254780862|r 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE 85 (199) Q Consensus 6 i~F~~~a~l~i~sal~vi~~kn~v~s~l~Li~~f~~vAgl~~lL~aeFla~~qIlVYvGAI~VLflFvIMll~~~~~~~~ 85 (199) .+||+|+.+++.||++|+++||||||++||+.+|+++||+|++|||||+|++||+||+|||+|||+|+|||+|.+.++.+ T Consensus 3 ~lF~i~a~~~i~sal~vv~~kNpVhsal~Li~~f~~~A~l~~lL~AeFLa~vqIiVYvGAI~VLfLFVIMmln~~~~~~~ 82 (184) T MTH00057 3 GLFYLFALGVIISGIMVISALNPVHSVLWLIVAFLSASALFILLEVEFIAFIFLIVYVGAIAILFLFVIMMLNLTDLEGG 82 (184) T ss_pred CHHHHHHHHHHHHHHHHEECCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHC T ss_conf 68999999999997840002764999999999999999999994759999999999998999999999997361476640 Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 332210012468999999999-9999776621566655434461138999999987526999999999999999999999 Q gi|254780862|r 86 PRKKRGFLGSFFIGILAAELI-VCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLM 164 (199) Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~L~t~y~~~fel~sviLLvamiGAi~La 164 (199) .+.++..+...+.+.+..... ....................+.+|++.+|+.|||+|.+|||++|++||+|||||++|| T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~iG~~Lft~Y~~pFel~silLLvAmIGAIvLt 162 (184) T MTH00057 83 GDMSNYLPAGFIIGVVFLFEILIFQSTFPSYGIRYVRWNWIEKEPNIEVLGRVLYTDYYYLFILASFILLVAMIGAIVLT 162 (184) T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 12135778999999999999999999741255544553225788759999999999889999999999999999999751 Q ss_pred HHCCCCCCCCCHHHHHHCCHH Q ss_conf 750588754689999500843 Q gi|254780862|r 165 LRHRRDIKRQDISKQLESNPD 185 (199) Q Consensus 165 ~~~~~~~krq~~~~q~~~~~~ 185 (199) +|+|+++||||+++|++||.+ T Consensus 163 ~~~~~~~k~Q~~~~Q~~r~~~ 183 (184) T MTH00057 163 HDLRIEIKRQDIFIQTSRQLW 183 (184) T ss_pred CCCCCCCCCCCHHHHHHHHHH T ss_conf 125788766689999878850 No 3 >MTH00021 ND6 NADH dehydrogenase subunit 6; Validated Probab=100.00 E-value=0 Score=321.34 Aligned_cols=174 Identities=33% Similarity=0.578 Sum_probs=137.0 Q ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH Q ss_conf 99999999999999724289999999999999999999808707999999999999999999999981731112123322 Q gi|254780862|r 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKK 89 (199) Q Consensus 10 ~~a~l~i~sal~vi~~kn~v~s~l~Li~~f~~vAgl~~lL~aeFla~~qIlVYvGAI~VLflFvIMll~~~~~~~~~~~~ 89 (199) +||.++++||++|+++||||||++||+.+|+++||+|+++||||+|++|++||+|||+|||+|+|||+|.+.++...+.+ T Consensus 1 ifa~~~i~sal~VV~~~NpV~saL~Li~~f~~vA~l~llL~aeFLa~vqIiVYvGAI~VLFLFVIMmLni~~~~~~~~~~ 80 (187) T MTH00021 1 MFSLGIVGSGIMVISALNPVHSIFWLVVVFVNSAVFFLLLGIDFIALMFLIIYVGAIAILFLFVIMLLNLTDFPPAFRLE 80 (187) T ss_pred CHHHHHHHHHHEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH T ss_conf 90599998867145427709999999999999999999955689999999999989999999999992640112055650 Q ss_pred HHHHHHHHHHHHHHHHHHHH--HHH------HHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 10012468999999999999--977------6621566655434461138999999987526999999999999999999 Q gi|254780862|r 90 RGFLGSFFIGILAAELIVCA--SNF------MVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAI 161 (199) Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~--~~~------~~~~~~~~~~~~~~~~~~~~~iG~~L~t~y~~~fel~sviLLvamiGAi 161 (199) +......+.+......+... ..+ .....+...+....+.+|+|.+|..|||+|.+|||++|++||+|||||| T Consensus 81 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ni~~iG~~Lyt~Y~~~FeiasiiLLvAmIGAI 160 (187) T MTH00021 81 ADMTNYIPIGLSIGTFFFSEIASSWLIIGGPYVERWDLAFPWFLMSYHNIEALGRILYIACYYLFILASFILLVAMIGAI 160 (187) T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 26520313999999999999999898715521245444674313567719999999998889999999999999999999 Q ss_pred HHHHHCCCCC----CCCCHHHHHHCC Q ss_conf 9997505887----546899995008 Q gi|254780862|r 162 VLMLRHRRDI----KRQDISKQLESN 183 (199) Q Consensus 162 ~La~~~~~~~----krq~~~~q~~~~ 183 (199) +||+|+|+++ ||||+++|++|. T Consensus 161 vLt~~~~~~~~~~~k~Q~i~~Q~~r~ 186 (187) T MTH00021 161 VLTQEIGSEVGPLAKKQDLFFQISRA 186 (187) T ss_pred HHHCCCCCCCCCCCCCCCHHHHHHCC T ss_conf 99500045778666665499887126 No 4 >CHL00016 ndhG NADH dehydrogenase subunit 6 Probab=100.00 E-value=0 Score=279.34 Aligned_cols=165 Identities=27% Similarity=0.367 Sum_probs=123.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH Q ss_conf 79999999999999999999972428999999999999999999980870799999999999999999999998173111 Q gi|254780862|r 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIE 82 (199) Q Consensus 3 ~~~i~F~~~a~l~i~sal~vi~~kn~v~s~l~Li~~f~~vAgl~~lL~aeFla~~qIlVYvGAI~VLflFvIMll~~~~~ 82 (199) .++++||+++.+++.||++++++|||+||++||+.+|+++||+|++|||||+|++||+||+|||+|||+|+|||+|.+.+ T Consensus 7 ~~~ilF~~~a~~~i~~al~vv~~~n~V~sal~Lv~~f~~vAgly~lL~A~Fla~~QIlVYaGAI~VLflFvIMll~~~~~ 86 (177) T CHL00016 7 IHDFLLVFLGSGLILGGLGVVLLTNPIYSAFSLGLVLVCISLLYILLNSDFVAAAQLLIYVGAINVLIIFAVMFMNGSEY 86 (177) T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH T ss_conf 99999999999999998840103644999999999999999999995358999999999999999999999998261644 Q ss_pred HHHHHHHHH-H-HHHHHHHHHHHHHHHHHHHHHHH--CCCC--CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 212332210-0-12468999999999999977662--1566--6554344611389999999875269999999999999 Q gi|254780862|r 83 VAEPRKKRG-F-LGSFFIGILAAELIVCASNFMVF--SAEG--ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLS 156 (199) Q Consensus 83 ~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~~~~~~iG~~L~t~y~~~fel~sviLLva 156 (199) +++.+..+. . ....................... .... .........+|+|.+|+.|||+|.+|||++|++||+| T Consensus 87 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~L~t~y~lpFEl~s~lLLvA 166 (177) T CHL00016 87 SKDFNLWTVGDGITSLVCTSLFFSLITTILDTSWYGIIWTTRSNQIIEQDLISNVQQIGIHLSTDFFLPFELISIILLVA 166 (177) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 30223677888999999999999999999964020113456664333333467799999999861799999999999999 Q ss_pred HHHHHHHHHHC Q ss_conf 99999999750 Q gi|254780862|r 157 MIGAIVLMLRH 167 (199) Q Consensus 157 miGAi~La~~~ 167 (199) ||||++||||| T Consensus 167 mIGAIvLarre 177 (177) T CHL00016 167 LIGAITIARQE 177 (177) T ss_pred HHHHHHHHCCC T ss_conf 99896420369 No 5 >COG0839 NuoJ NADH:ubiquinone oxidoreductase subunit 6 (chain J) [Energy production and conversion] Probab=100.00 E-value=4.2e-45 Score=264.08 Aligned_cols=166 Identities=36% Similarity=0.647 Sum_probs=139.0 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 95799999999999999999999724289999999999999999999808707999999999999999999999981731 Q gi|254780862|r 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 (199) Q Consensus 1 M~~~~i~F~~~a~l~i~sal~vi~~kn~v~s~l~Li~~f~~vAgl~~lL~aeFla~~qIlVYvGAI~VLflFvIMll~~~ 80 (199) |+++.+.||+|+.++++++++++++|||+||+++|..+++++|++|+++||||+|++|++||+|||+|+|+|++||+|.+ T Consensus 1 ~~~~~~~F~~fa~~~i~~a~~VV~~kn~vys~l~L~~~~l~iA~~~~ll~aefl~v~~v~VYvGAV~vl~~fvvm~~~~~ 80 (166) T COG0839 1 MMIETLAFYLFAVLAIAFALGVVLAKNPVYSALYLALTLLSIAALFFLLGAEFLGVVQVLVYVGAVMVLFLFVVMMLNVD 80 (166) T ss_pred CCHHHHHHHHHHHHHHHHHHEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 91899999999999999860045533769999999999999999999826399999999999989999999999983555 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 11212332210012468999999999999977662156665543446113899999998752699999999999999999 Q gi|254780862|r 81 IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGA 160 (199) Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~L~t~y~~~fel~sviLLvamiGA 160 (199) .++.+++.++..+.....+....................+. + +.+.+|+|.+|+.+||+|++|||++|++||+||+|| T Consensus 81 ~~~~~~~~~~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~lg~~Lft~Yl~pfe~asilLL~amVgA 158 (166) T COG0839 81 GAEVREEGLRGKPLAALVGLVLLALLIISVAVVSGAFVPPS-N-PAAIGNIKALGSVLFTDYLLPFELASVLLLVAMVGA 158 (166) T ss_pred CHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC-C-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 06641337725626999999999999999999845667855-5-555435999999994606899999999999999989 Q ss_pred HHHHHHCC Q ss_conf 99997505 Q gi|254780862|r 161 IVLMLRHR 168 (199) Q Consensus 161 i~La~~~~ 168 (199) |+|+|||+ T Consensus 159 I~Larr~~ 166 (166) T COG0839 159 IVLARRER 166 (166) T ss_pred HHHHCCCC T ss_conf 43321379 No 6 >MTH00213 ND6 NADH dehydrogenase subunit 6; Provisional Probab=100.00 E-value=1.8e-37 Score=222.23 Aligned_cols=168 Identities=33% Similarity=0.547 Sum_probs=119.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---------------HCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH Q ss_conf 7999999999999999999997---------------2428999999999999999999980870799999999999999 Q gi|254780862|r 3 MQSLFFYLFSFMAIISSFLVVT---------------VRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI 67 (199) Q Consensus 3 ~~~i~F~~~a~l~i~sal~vi~---------------~kn~v~s~l~Li~~f~~vAgl~~lL~aeFla~~qIlVYvGAI~ 67 (199) -||++|.+++.+++..+++.++ ++|-++|++||+++|.+.||+|++||+||+|++.++||||||+ T Consensus 7 red~lf~~lss~tv~aaimti~~~~~~~~~~avtp~~s~n~~~SVfwLILvF~nsSgLFILLG~dFlALIFLIVYVGAIA 86 (312) T MTH00213 7 REDVLFAILSSITVIAAIMTISSGAIPKKSSAVTPIYSHNFLASVFWLILAFIGSSGLFIVLGMEFLGLIFLIVYVGAIC 86 (312) T ss_pred HHHEEHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 13000123657889998864115777986653062334441999999999997246999998219999999999997999 Q ss_pred HHHHHHHHHHCCC---------HHHHHHHH---------------------------------------------HHHHH Q ss_conf 9999999981731---------11212332---------------------------------------------21001 Q gi|254780862|r 68 VFFLFIIMMLDID---------IEVAEPRK---------------------------------------------KRGFL 93 (199) Q Consensus 68 VLflFvIMll~~~---------~~~~~~~~---------------------------------------------~~~~~ 93 (199) |||||||||+|.. .++..... ....+ T Consensus 87 ILFLFVIMML~~~~f~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~f~~~~~~~e~~~~~~~~~~~~~~~~p 166 (312) T MTH00213 87 IIFLFVIMMIPGGSFLGAPGAEGAHAIDLWGSEAPLISKAGIFIKFAKAFWKAKFGGKALSAEKDKAGAGAHSAAPSNTA 166 (312) T ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 99999999436645555322222111000012355443211002233210331124332221000122100014665551 Q ss_pred HHHHHHHHHHHHH-HHH-HHHHH-------------------------------------HC-----C----------C- Q ss_conf 2468999999999-999-97766-------------------------------------21-----5----------6- Q gi|254780862|r 94 GSFFIGILAAELI-VCA-SNFMV-------------------------------------FS-----A----------E- 118 (199) Q Consensus 94 ~~~~~~~~~~~~~-~~~-~~~~~-------------------------------------~~-----~----------~- 118 (199) ....++.++..-+ ... ..+.. +. . + T Consensus 167 IG~LIG~Il~~El~~~v~~sfl~~~~~~~g~~~l~~p~~~~gv~si~~~~~~~~~~~~~n~~~~~~~~~a~~~~l~~~~~ 246 (312) T MTH00213 167 IGVLIGAILGAELSAAVPESFLNGPNGKGGAERLAPPLIPLGVESILEPDIKNIAFEFQNLINMRGASAAPEESLGRLWR 246 (312) T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCC T ss_conf 68899999999999860155404532246631136643332113321102333125556677765311552132222214 Q ss_pred -------------CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC Q ss_conf -------------6655434461138999999987526999999999999999999999750588 Q gi|254780862|r 119 -------------GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 (199) Q Consensus 119 -------------~~~~~~~~~~~~~~~iG~~L~t~y~~~fel~sviLLvamiGAi~La~~~~~~ 170 (199) ..+.......+|+|+||+.|||+|.+.|+++|++||+||||||+|+.|+..| T Consensus 247 p~~~~~~~~~~~~~f~~~~~~~~tNIEAIG~VLYT~YyY~FILASfILLVAMIGAIVL~l~~~~~ 311 (312) T MTH00213 247 PFGEPDCAPLANDSFFALNAPGCSNLEAIGAVLYINYYYAFILVSFILLVAMIGAIVLGLQSSDR 311 (312) T ss_pred CCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCC T ss_conf 33344445444542010157888779998788999999999999999999998476221004678 No 7 >PRK06433 NADH dehydrogenase subunit J; Provisional Probab=99.97 E-value=3.2e-30 Score=182.84 Aligned_cols=86 Identities=29% Similarity=0.500 Sum_probs=82.3 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 95799999999999999999999724289999999999999999999808707999999999999999999999981731 Q gi|254780862|r 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 (199) Q Consensus 1 M~~~~i~F~~~a~l~i~sal~vi~~kn~v~s~l~Li~~f~~vAgl~~lL~aeFla~~qIlVYvGAI~VLflFvIMll~~~ 80 (199) |+.|++.||+++.++++||++++++|||+||++||+.+|+++|++|+++||||+|+.||+||+|||+|||+|+|||+|.+ T Consensus 2 m~~e~i~F~~~a~~~v~~al~vv~~rn~Vhsal~L~~~~~~vA~ly~ll~AeFla~vQilVY~GAi~vL~lF~vMLt~~~ 81 (89) T PRK06433 2 MAYETLVFALFAILTVGFSVGVVLAKDVWHSALYLGIFLFSVAVLYIMLGASFLGVVQVLVYIGAVLILITFAVMLTKRQ 81 (89) T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC T ss_conf 71699999999999999998998722699999999999999999999926889999999999809999999999982877 Q ss_pred HHHHHH Q ss_conf 112123 Q gi|254780862|r 81 IEVAEP 86 (199) Q Consensus 81 ~~~~~~ 86 (199) .++++. T Consensus 82 ~~~~~~ 87 (89) T PRK06433 82 IGGEEI 87 (89) T ss_pred CCCCCC T ss_conf 676778 No 8 >pfam00499 Oxidored_q3 NADH-ubiquinone/plastoquinone oxidoreductase chain 6. Probab=99.88 E-value=1.5e-21 Score=135.61 Aligned_cols=139 Identities=26% Similarity=0.406 Sum_probs=96.3 Q ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH Q ss_conf 99999997242899999999999999999998087079999999999999999999999817311121233221001246 Q gi|254780862|r 17 ISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSF 96 (199) Q Consensus 17 ~sal~vi~~kn~v~s~l~Li~~f~~vAgl~~lL~aeFla~~qIlVYvGAI~VLflFvIMll~~~~~~~~~~~~~~~~~~~ 96 (199) .+++.++++|||+|++++++..++++|+++..+|++|+|.+|++||+||++|+|+|++|+.+.+..+..++ . ... T Consensus 2 ~~~l~~~~~~~Pi~~~l~li~~~l~~a~~~~~~~~~~~~~i~~lVYvGg~mVlFly~~~l~~~~~~~~~~~--~--~~~- 76 (140) T pfam00499 2 LSSLLVLFSKNPIYLGLSLILLSLSLSLLLFLLGSSWLGLILFLVYVGGILVLFLYVVSLSPNEKFKFKKG--S--KFL- 76 (140) T ss_pred EEEEHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH--H--HHH- T ss_conf 42203797088899999999999999999999967999999999999899999999999567515666753--8--999- Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 89999999999999776621566655434461138999999987526999999999999999999999 Q gi|254780862|r 97 FIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLM 164 (199) Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~L~t~y~~~fel~sviLLvamiGAi~La 164 (199) ......... .........+....... ...+....+..+|++|..+||+.+++|+++++|++.++ T Consensus 77 -~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~i~Lli~li~~i~l~ 140 (140) T pfam00499 77 -LLLLLLLFI--LLLFFLLFSNLSFSLNS-ISSSNVNLLSLLYSSNSLIFILLSLLLLIALIGVIKLA 140 (140) T ss_pred -HHHHHHHHH--HHHHHHHHHHCCCCCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf -999999999--99999985201233345-66529999999974479999999999999999996729 No 9 >PRK12504 putative monovalent cation/H+ antiporter subunit B; Reviewed Probab=98.73 E-value=2.6e-06 Score=52.74 Aligned_cols=163 Identities=15% Similarity=0.149 Sum_probs=98.4 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH Q ss_conf 79999999999999999999972428999999999999999999980870799999999999999999999998173111 Q gi|254780862|r 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIE 82 (199) Q Consensus 3 ~~~i~F~~~a~l~i~sal~vi~~kn~v~s~l~Li~~f~~vAgl~~lL~aeFla~~qIlVYvGAI~VLflFvIMll~~~~~ 82 (199) +..++=+.+..+.+.+++.++++||-..+++.+-..-+++|..|..++||=+|..|..|=+|=..++++-+...+..+.+ T Consensus 2 ~~~~~e~~l~~llv~~ai~~v~~r~rl~avi~~gv~G~~val~f~~l~APDvAlTQ~~Vet~ittvL~l~~l~~l~~~~~ 81 (178) T PRK12504 2 VLFIINVVLLLFLVATAVAVVLLRDLLASIVAMATFSLLIALIYLILDAPDVAITEAAVGAGISTVLFLATLSLTVRGDV 81 (178) T ss_pred CEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC T ss_conf 02189999999999999999999999999999999999999999994695699999999997999999999984577642 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCCCCCCCC--CHHHH------HHHHHH---HHHHHHHHHHH Q ss_conf 21233221001246899999999999997766215-66655434461--13899------999998---75269999999 Q gi|254780862|r 83 VAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA-EGELSRLVFKG--NNVEN------IGKVLY---TQYAYPLEISG 150 (199) Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~------iG~~L~---t~y~~~fel~s 150 (199) +...+..+ .+.....................+.. +.+.++...+. .|... +=+... --|=--.|+ T Consensus 82 ~~~~~~~~-~~~~~~~~~~~~~l~~~~~~l~~~~~~~~p~~~~is~~y~e~s~~~~gg~NvVnvILvdFRg~DTlGEi-- 158 (178) T PRK12504 82 EKVFERVN-IFAMLIALGLFGALIYAVLDLPAFGDPNAPAHGHVAPYYIENTYEEIGIPNVVTAVLASYRGYDTLGET-- 158 (178) T ss_pred CCCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEHHHCCCHHHHH-- T ss_conf 34555410-899999999999999999998860376887655114999984576429988145562122220036699-- Q ss_pred HHHHHHHHHHHHHHHHCC Q ss_conf 999999999999997505 Q gi|254780862|r 151 FILLLSMIGAIVLMLRHR 168 (199) Q Consensus 151 viLLvamiGAi~La~~~~ 168 (199) ..|.+|-+|...|-|||+ T Consensus 159 ~VL~iA~lgV~~Llrr~~ 176 (178) T PRK12504 159 IVVFTAGLAVLLLLRRED 176 (178) T ss_pred HHHHHHHHHHHHHHHHHH T ss_conf 999999999999983460 No 10 >PRK12507 putative monovalent cation/H+ antiporter subunit B; Reviewed Probab=98.42 E-value=1.7e-05 Score=48.37 Aligned_cols=69 Identities=19% Similarity=0.223 Sum_probs=60.2 Q ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999999999724289999999999999999999808707999999999999999999999981 Q gi|254780862|r 9 YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMML 77 (199) Q Consensus 9 ~~~a~l~i~sal~vi~~kn~v~s~l~Li~~f~~vAgl~~lL~aeFla~~qIlVYvGAI~VLflFvIMll 77 (199) -+.+.+.+..++.++++||-..++..+...-+++|-.|..++||=+|..|++|=++=..++++.+.--+ T Consensus 15 ~~ialllv~~ai~~v~~r~rl~Avvl~gv~Gl~val~Fv~l~APDLALTQ~~Ve~~lt~vllll~l~~l 83 (334) T PRK12507 15 NLIAFLLVLISIKIIFAKDLLNAVILTSIFSLLIAVSFLIMDAPDVAMTEAALGACLSTCVYLNLLRKL 83 (334) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 999999999999999999999999999999999999999859846999999999999999999999867 No 11 >MTH00045 ND6 NADH dehydrogenase subunit 6; Validated Probab=98.33 E-value=1.8e-08 Score=64.56 Aligned_cols=158 Identities=23% Similarity=0.354 Sum_probs=104.4 Q ss_pred HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH Q ss_conf 99999999999999997242899999999999999999998087079999999999999999999999817311121233 Q gi|254780862|r 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPR 87 (199) Q Consensus 8 F~~~a~l~i~sal~vi~~kn~v~s~l~Li~~f~~vAgl~~lL~aeFla~~qIlVYvGAI~VLflFvIMll~~~~~~~~~~ 87 (199) ++++....+.+.+.+...++|.|+++.|+.+-.+-.++....|.+|++.+..+||-|+..|.|.+..-|..-+.++. +. T Consensus 3 ~fl~~~~lv~G~v~V~snpSPyfgalgLV~~a~~gC~iL~~~G~sFlsLvLfLIYLGGMLVVFaYs~ALaaE~yP~~-~~ 81 (161) T MTH00045 3 FYLVLIVMLFGSTLVFYSLSPYYGALGLVIVSISGCLLLSLLGLSFVALVLLLVYMGGMLVVFVYSSAISAERYPSV-SN 81 (161) T ss_pred HHHHHHHHHHHHHEEECCCCHHHHHHHHHHHHHCHHHHHHHCCCCHHHHHHHHHHHCCEEEHHHHHHHHHCCCCCCC-CC T ss_conf 28999999986516886798288879999988332473664697389999999993867862123388874789852-46 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 22100124689999999999999776621566655434461138999999987526999999999999999999999750 Q gi|254780862|r 88 KKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 (199) Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~L~t~y~~~fel~sviLLvamiGAi~La~~~ 167 (199) .+.. ....... ..........+..............|.. =...+|+....-+.+.+-.||.++...+-++|.+ T Consensus 82 ~~~v-~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~d~~-Gv~~lY~~gg~~l~l~gw~LLltLfVVLEltRG~ 154 (161) T MTH00045 82 LNEV-LVLSFLF-----ILWVFISFDNFNNLSNSNWSLSSNSSLV-GSSYLFNSMGLFLLLGGFILLVALVVALVISRGS 154 (161) T ss_pred CCEE-EEEEEEE-----EEEEEEEEEEEEEEECCCEEEEECCCCE-EHHHHHHCCHHHHHHHHHHHHHHHHEEEEEECCC T ss_conf 6568-8999999-----9999998012487633756899778754-7155674989999899999999865558991587 Q ss_pred CCCCCC Q ss_conf 588754 Q gi|254780862|r 168 RRDIKR 173 (199) Q Consensus 168 ~~~~kr 173 (199) .++.-| T Consensus 155 srGaLR 160 (161) T MTH00045 155 EYSSLR 160 (161) T ss_pred CCCCCC T ss_conf 503106 No 12 >PRK08378 hypothetical protein; Provisional Probab=98.30 E-value=1.3e-05 Score=48.95 Aligned_cols=80 Identities=21% Similarity=0.218 Sum_probs=75.2 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 95799999999999999999999724289999999999999999999808707999999999999999999999981731 Q gi|254780862|r 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 (199) Q Consensus 1 M~~~~i~F~~~a~l~i~sal~vi~~kn~v~s~l~Li~~f~~vAgl~~lL~aeFla~~qIlVYvGAI~VLflFvIMll~~~ 80 (199) |+.+.++=+++-...+.+++.++..||...++...-.-=+..|.+|..|+|+=+|..+-.|-+|-..++|++++..+... T Consensus 1 m~~~~iI~~ill~~lvv~Ai~~v~~rdLl~avi~~~~~Sll~a~~f~~L~ApDVA~TEAaVGAGisTvl~l~al~~T~R~ 80 (94) T PRK08378 1 MNCDMCIQFIIVALMIISAILAVEWRDLLAAAVGMAAVSLFASLLFFMLQAPDVAMTEAAIGAALSTAVVIFAIKRTERY 80 (94) T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 93999999999999999999999999999999999999999999999957848999999998039999999999971366 No 13 >PRK12645 monovalent cation/H+ antiporter subunit A; Reviewed Probab=98.15 E-value=0.00039 Score=40.95 Aligned_cols=71 Identities=17% Similarity=0.251 Sum_probs=57.8 Q ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 99999999999999999724289999999999999999999808707999999999999999999999981731 Q gi|254780862|r 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 (199) Q Consensus 7 ~F~~~a~l~i~sal~vi~~kn~v~s~l~Li~~f~~vAgl~~lL~aeFla~~qIlVYvGAI~VLflFvIMll~~~ 80 (199) .=+....+.+.+++.++++|+-..+++.+-.+-+++|.+|...|||=+|..|++|=.= ...+|+.-+...+ T Consensus 630 ~~~~~~~l~~~~a~~~~~~~~rl~av~~lgv~G~~val~f~~~gAPDlAlTQ~lVEtl---t~v~~~lvl~~lP 700 (800) T PRK12645 630 YEVILVIVLLSAAFAILFAKSRLTSIILLGAVGYTVALFFVIFRAPDLALTQLVVETI---SVALFLLCFYHLP 700 (800) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH---HHHHHHHHHHHCC T ss_conf 9999999999999999999989999999967899999999990881699999999999---9999999997688 No 14 >PRK12647 putative monovalent cation/H+ antiporter subunit A; Reviewed Probab=98.14 E-value=0.00011 Score=43.97 Aligned_cols=71 Identities=17% Similarity=0.351 Sum_probs=57.6 Q ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 99999999999999999724289999999999999999999808707999999999999999999999981731 Q gi|254780862|r 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 (199) Q Consensus 7 ~F~~~a~l~i~sal~vi~~kn~v~s~l~Li~~f~~vAgl~~lL~aeFla~~qIlVYvGAI~VLflFvIMll~~~ 80 (199) .-+....+.+.+++.+.++|+-..+++.+-.+-.++|.+|...|||=+|..|++|=.= .+.+|+.-+...+ T Consensus 588 ~~~~~~~li~~a~~~~~~~~~Rl~av~~lgv~G~~val~f~~~gAPDlAlTQ~lVEtl---t~v~~~lvl~~lP 658 (761) T PRK12647 588 YEWALALIIVAGALATITTRSRLTAIVSLGVQGFGVALIFILFGAPDLAMTQFLIETL---SVILLVLVLYRLP 658 (761) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH---HHHHHHHHHHHCC T ss_conf 9999999999999999999999999999978999999999990881699999999999---9999999996588 No 15 >PRK12646 putative monovalent cation/H+ antiporter subunit A; Reviewed Probab=98.05 E-value=0.00029 Score=41.69 Aligned_cols=73 Identities=16% Similarity=0.186 Sum_probs=58.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCH Q ss_conf 9999999999999999997242899999999999999999998087079999999999999999999999817311 Q gi|254780862|r 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI 81 (199) Q Consensus 6 i~F~~~a~l~i~sal~vi~~kn~v~s~l~Li~~f~~vAgl~~lL~aeFla~~qIlVYvGAI~VLflFvIMll~~~~ 81 (199) ..-+....+.+.+++.++++||-..+++.+-.+-+++|.+|.+.|||=+|..|++|=. ....+|+.-+...+. T Consensus 628 ~~~~~~~~~~~~~a~~~~~~~~Rl~av~~lgv~G~~val~F~~~gAPDlAlTQ~lVEt---ltvv~~~lvl~~lP~ 700 (800) T PRK12646 628 ALEIILAIVTVTIGISLIFIRQRLTMVILNGVIGFVVTLFFIAMKAPDLALTQLVVET---ITTILFIVSFSRLPN 700 (800) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH---HHHHHHHHHHHHCCC T ss_conf 7999999999999999999998999999996899999999999088179999999999---999999999976889 No 16 >PRK06439 NADH dehydrogenase subunit J; Provisional Probab=97.76 E-value=1.5e-05 Score=48.60 Aligned_cols=45 Identities=22% Similarity=0.485 Sum_probs=38.4 Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 434461138999999987526999999999999999999999750 Q gi|254780862|r 123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH 167 (199) Q Consensus 123 ~~~~~~~~~~~iG~~L~t~y~~~fel~sviLLvamiGAi~La~~~ 167 (199) +..+...|+..+|..+|+.|..|||+.|+++-.|.+|....++.+ T Consensus 27 tFi~~sQnIs~iG~~lFntYivPFELlSviiV~aviGVMYva~~e 71 (72) T PRK06439 27 TFIPVSQNISRIGTELFNTYIVPFELLSVIIVGAVIGVMYVAWGE 71 (72) T ss_pred CEEECCCCHHHHHHHHHHHEEEHHHHHHHHHHHHHHEEEEEECCC T ss_conf 257626427688788771003159999999999977368996068 No 17 >PRK12644 putative monovalent cation/H+ antiporter subunit A; Reviewed Probab=97.76 E-value=0.0021 Score=36.93 Aligned_cols=68 Identities=19% Similarity=0.290 Sum_probs=56.6 Q ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999999999997242899999999999999999998087079999999999999999999999 Q gi|254780862|r 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 (199) Q Consensus 7 ~F~~~a~l~i~sal~vi~~kn~v~s~l~Li~~f~~vAgl~~lL~aeFla~~qIlVYvGAI~VLflFvIM 75 (199) .-+..+.+.+.+++.++++||-..+++.+-.+-+++|.+|...+|+=+|..|++|=.=- .|+++.+.- T Consensus 598 ~~~~~~~li~~~a~~~~~~~~Rl~avi~lgv~G~~val~F~~~gAPDlAlTQllVEtlt-vvl~~LvL~ 665 (968) T PRK12644 598 LQVVVGLLMIAAALAATVMRNRLAAVLLVGVTGYGCALIFALHGAPDLALTQFLVETIT-LVVFVLVLR 665 (968) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-HHHHHHHHH T ss_conf 99999999999999999999999999999668999999999918816999999999999-999999997 No 18 >PRK12648 putative monovalent cation/H+ antiporter subunit A; Reviewed Probab=97.70 E-value=0.0021 Score=37.02 Aligned_cols=70 Identities=16% Similarity=0.110 Sum_probs=50.9 Q ss_pred HHHHH-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 99999-99999999999724289999999999999999999808707999999999999999999999981731 Q gi|254780862|r 8 FYLFS-FMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 (199) Q Consensus 8 F~~~a-~l~i~sal~vi~~kn~v~s~l~Li~~f~~vAgl~~lL~aeFla~~qIlVYvGAI~VLflFvIMll~~~ 80 (199) +.... .+.+.+...+.++||-..+++.+-.+-.++|.+|...+||=+|..|++|=. ..+.+|+.-+...+ T Consensus 608 ~~~~~~~~~~~a~~~~~~~r~Rl~av~~~gv~G~~val~F~~~gAPDlAlTQ~lVEt---lt~vl~~lvl~~lP 678 (950) T PRK12648 608 FALLWLLLIACALGAAWQAKHRLAALILLGGAGLVVSLTFVWFSAPDLALTQLLVEV---VTTVLLLLGLRWLP 678 (950) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH---HHHHHHHHHHHHCC T ss_conf 999999999999999999887999999996689999999999188279999999999---99999999998687 No 19 >PRK12650 putative monovalent cation/H+ antiporter subunit A; Reviewed Probab=97.56 E-value=0.0028 Score=36.26 Aligned_cols=68 Identities=19% Similarity=0.163 Sum_probs=55.6 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999999999999724289999999999999999999808707999999999999999999999 Q gi|254780862|r 6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74 (199) Q Consensus 6 i~F~~~a~l~i~sal~vi~~kn~v~s~l~Li~~f~~vAgl~~lL~aeFla~~qIlVYvGAI~VLflFvI 74 (199) ..-+....+.+.+++.++++||-..+++.+-.+-+++|.+|...+|+=+|..|++|=+=- .|+|+.+. T Consensus 605 ~~~~~~~~li~~a~~~~~~~r~Rl~avi~lgv~G~~val~F~~~gAPDLAlTQllVEtlt-vVl~~LvL 672 (969) T PRK12650 605 WIDLIPLAIIALSVIGLLRTRSRLAAVVLVGVVGVGVSFQMLTLGAPDVALTQLLVEGLV-VVIMMLVV 672 (969) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-HHHHHHHH T ss_conf 999999999999999999999999999999678999999999918826999999999999-99999999 No 20 >MTH00152 ND6 NADH dehydrogenase subunit 6; Provisional Probab=97.50 E-value=0.0051 Score=34.88 Aligned_cols=151 Identities=14% Similarity=0.130 Sum_probs=84.8 Q ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH Q ss_conf 99999999999972428999999999999999999980870799999999999999999999998173111212332210 Q gi|254780862|r 12 SFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRG 91 (199) Q Consensus 12 a~l~i~sal~vi~~kn~v~s~l~Li~~f~~vAgl~~lL~aeFla~~qIlVYvGAI~VLflFvIMll~~~~~~~~~~~~~~ 91 (199) ...+.......-..++|.--.+.+...=+.++.+.-.......+-+-=+||+|+..|+|..+.-+.. .+ . ...+. T Consensus 7 ~~~~~sl~~i~~~m~~PlSLGl~ll~~t~~~~~~~g~~~s~WysYiLFLIyvGGlLVmFiYv~slap--N~-~--f~~~~ 81 (168) T MTH00152 7 FSLGFSLFSILPLFKQPLSLGFVLMLLSLFVCVEMGLFVSSWYGYLLFLVYVGGLLVMFLYVISLSP--NL-L--FVFNT 81 (168) T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--HH-H--HHCCH T ss_conf 9999999999998459299999999999999999999989999999999999789999999999675--47-7--75053 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHH-HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 012468999999999999977662156665543446113899-9999987-5269999999999999999999997505 Q gi|254780862|r 92 FLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVEN-IGKVLYT-QYAYPLEISGFILLLSMIGAIVLMLRHR 168 (199) Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-iG~~L~t-~y~~~fel~sviLLvamiGAi~La~~~~ 168 (199) ................................. ....+.+. -+..++. +...-+...+..|+.++|+.+-++..++ T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~L~~~Lli~Li~VVKIc~~~~ 159 (168) T MTH00152 82 VFLYFFLILFSFLLMNFFVLKSSSSVEMKFLGL-SNYESLSLSGSEMLMSWDNFSCFLGLAVLLLIVLVSVVKICYYNE 159 (168) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHEEECCCCC T ss_conf 999999999999999999974688888887676-777788753288887146099999999999999894101104778 No 21 >PRK12649 putative monovalent cation/H+ antiporter subunit A; Reviewed Probab=97.44 E-value=0.0062 Score=34.42 Aligned_cols=71 Identities=17% Similarity=0.270 Sum_probs=57.6 Q ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 99999999999999999724289999999999999999999808707999999999999999999999981731 Q gi|254780862|r 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID 80 (199) Q Consensus 7 ~F~~~a~l~i~sal~vi~~kn~v~s~l~Li~~f~~vAgl~~lL~aeFla~~qIlVYvGAI~VLflFvIMll~~~ 80 (199) .-+....+.+.+++.+.++|+-..+++.+-.+-+++|.+|...|||=+|..|++|=. ....+|+.-+...+ T Consensus 632 ~~~~~~~l~~~~a~~~~~~~~rl~av~~lgv~G~~val~F~~~gAPDlAlTQ~lVEt---ltvvl~~lvl~~lP 702 (800) T PRK12649 632 YEAILLLLLILAALGAAILPRYLPAIIALSALGFGVALLFIYLKAPDLALTQICVET---LSTIIFILAIIKIP 702 (800) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH---HHHHHHHHHHHHCC T ss_conf 999999999999999999999999999998999999999999298389999999999---99999999997589 No 22 >TIGR00940 2a6301s01 monovalent cation:proton antiporter; InterPro: IPR005663 This family of proteins consists of bacterial multicomponent K+:H+ and Na+:H+ antiporters. The best characterised systems are the PhaABCDEFG system of Rhizobium meliloti which functions in pH adaptation and as a K+ efflux system and the MnhABCDEFG system of Staphylococcus aureus which functions as a Na+:H+ antiporter.; GO: 0015077 monovalent inorganic cation transmembrane transporter activity, 0030004 cellular monovalent inorganic cation homeostasis. Probab=97.26 E-value=0.01 Score=33.25 Aligned_cols=168 Identities=20% Similarity=0.282 Sum_probs=95.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH Q ss_conf 9999999999999999999724--28999999999999999999980870799999999999999999999998173111 Q gi|254780862|r 5 SLFFYLFSFMAIISSFLVVTVR--NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIE 82 (199) Q Consensus 5 ~i~F~~~a~l~i~sal~vi~~k--n~v~s~l~Li~~f~~vAgl~~lL~aeFla~~qIlVYvGAI~VLflFvIMll~~~~~ 82 (199) +..++++..+.+++++.....+ +=..|..-+-..-+.++-.|+.+.||=+|+.|.+|=.=. .|||+-.---+....+ T Consensus 629 ~p~~~~l~~~~i~~a~~i~f~~kfhRl~sii~lg~~G~~~~~~Fv~f~APDLAlTQllVE~vt-tvLflL~fyhLP~l~~ 707 (809) T TIGR00940 629 DPYFVVLVLILIAAALAIAFAKKFHRLASIILLGAVGYVVAILFVFFKAPDLALTQLLVEIVT-TVLFLLAFYHLPKLRK 707 (809) T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH-HHHHHHHHHHCCCCCC T ss_conf 499999999999999999988877899999999999999999999971641789999999999-9999998751752002 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHCCCCCCCC-CCCCCCHHHHHH--H----HHHHH-HHHHHHHHHHH Q ss_conf 21233221001246899999999--999997766215666554-344611389999--9----99875-26999999999 Q gi|254780862|r 83 VAEPRKKRGFLGSFFIGILAAEL--IVCASNFMVFSAEGELSR-LVFKGNNVENIG--K----VLYTQ-YAYPLEISGFI 152 (199) Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~iG--~----~L~t~-y~~~fel~svi 152 (199) |+...+.+ .....++...+.. +..+..+.... +....+ ..-...|.++++ + ...-| --+--.+-+.+ T Consensus 708 e~~~~~f~--l~n~~I~~GVG~~V~~I~L~~y~~Gt-e~~l~~IS~yy~E~~~~LA~G~NMVNVILVDFRGlDTLlE~~V 784 (809) T TIGR00940 708 EKVAAKFS--LSNSLIAIGVGLLVILIALIAYALGT-EAGLESISKYYIENVKDLAGGKNMVNVILVDFRGLDTLLEVLV 784 (809) T ss_pred CCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCHHHHHHHHH T ss_conf 45420133--44436762257999999999752100-0124577888876446641784258888850442579999999 Q ss_pred HHHHHHHHHHHH-HHCCCCCCCCCH Q ss_conf 999999999999-750588754689 Q gi|254780862|r 153 LLLSMIGAIVLM-LRHRRDIKRQDI 176 (199) Q Consensus 153 LLvamiGAi~La-~~~~~~~krq~~ 176 (199) |=+|-.|.+..- .|||+...|+|+ T Consensus 785 LGIA~L~V~~MIKLRkkr~T~~~~V 809 (809) T TIGR00940 785 LGIAALAVIAMIKLRKKRQTQREDV 809 (809) T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCC T ss_conf 9999999999999765305677789 No 23 >MTH00015 ND6 NADH dehydrogenase subunit 6; Validated Probab=96.99 E-value=0.02 Score=31.70 Aligned_cols=144 Identities=20% Similarity=0.306 Sum_probs=90.5 Q ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH Q ss_conf 99999999999999724289999999999999999999808707999999999999999999999981731112123322 Q gi|254780862|r 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKK 89 (199) Q Consensus 10 ~~a~l~i~sal~vi~~kn~v~s~l~Li~~f~~vAgl~~lL~aeFla~~qIlVYvGAI~VLflFvIMll~~~~~~~~~~~~ 89 (199) .+..+.+.+.+..-...+|+-=.+|-...=+..++.....-..-.|.+-=+||+|+-.|+|-...-+.. ... ...+ T Consensus 5 ~l~sl~~s~~l~lpL~~~PLsLGl~Il~~al~~s~~~a~~~SSWf~~ilFLIYIGGmLVMFAYfaAlsP---Nq~-~~~~ 80 (155) T MTH00015 5 MFFILMIASTFMLFLASTPIMLGINILAMALLLAATFASFMSSWFAFLIFLIYIGGMLVMFAYFLALTP---NQQ-IPNF 80 (155) T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH---HHH-HCCC T ss_conf 999999999999888168399999999999999999999998999999999999479999999999080---677-4123 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 100124689999999999999776621566655434461138999999987-5269999999999999999999997505 Q gi|254780862|r 90 RGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYT-QYAYPLEISGFILLLSMIGAIVLMLRHR 168 (199) Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~L~t-~y~~~fel~sviLLvamiGAi~La~~~~ 168 (199) +..+.. ........ ...+....... ...++.+ -...+|+ ++..-....+++|+.+++..+-++.|++ T Consensus 81 ~~~~~~-~i~~~~~~----~~~~~~~~~~~------~~~~~~~-~~~~lys~~~~~ili~L~~iLll~Li~VVKi~~~~~ 148 (155) T MTH00015 81 NIILYA-LITIITFS----ALMLLTNIKIP------IFNDISQ-GNQILYMLDSAPFLIILALILLLTMVIVVKLTSRSK 148 (155) T ss_pred HHHHHH-HHHHHHHH----HHHHHCCCCCC------HHHHCCC-HHHHHHCCCCCHHHHHHHHHHHHHHHHEEEEEECCC T ss_conf 089999-99999999----99984678872------1520120-278987368857999999999999886045542478 Q ss_pred C Q ss_conf 8 Q gi|254780862|r 169 R 169 (199) Q Consensus 169 ~ 169 (199) . T Consensus 149 G 149 (155) T MTH00015 149 G 149 (155) T ss_pred C T ss_conf 9 No 24 >COG1563 Predicted subunit of the Multisubunit Na+/H+ antiporter [Inorganic ion transport and metabolism] Probab=96.87 E-value=0.025 Score=31.11 Aligned_cols=73 Identities=23% Similarity=0.286 Sum_probs=64.6 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 7999999999999999999997242899999999999999999998087079999999999999999999999 Q gi|254780862|r 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM 75 (199) Q Consensus 3 ~~~i~F~~~a~l~i~sal~vi~~kn~v~s~l~Li~~f~~vAgl~~lL~aeFla~~qIlVYvGAI~VLflFvIM 75 (199) .-+..-|++..+.+.+++..+..||+.+++..--..-...+-+|.+++||=+|+.+=+|-+|=...+|++.+- T Consensus 7 ~~~~i~~~i~~ll~l~a~~~i~qrdll~AvI~~~~lsll~ally~ll~APDVAlTEA~vGa~l~t~v~~~alr 79 (87) T COG1563 7 LGNLIEYLITILLLLSALLAIFQRDLLNAVIASGVLSLLAALLYTLLLAPDVALTEALVGAGLSTAVYAIALR 79 (87) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 8899999999999999999998665899999986899999999999669749999999980799999999999 No 25 >MTH00214 ND6 NADH dehydrogenase subunit 6; Provisional Probab=96.55 E-value=0.00029 Score=41.66 Aligned_cols=158 Identities=16% Similarity=0.289 Sum_probs=94.6 Q ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH Q ss_conf 99999999999999724289999999999999999999808707999999999999999999999981731112123322 Q gi|254780862|r 10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKK 89 (199) Q Consensus 10 ~~a~l~i~sal~vi~~kn~v~s~l~Li~~f~~vAgl~~lL~aeFla~~qIlVYvGAI~VLflFvIMll~~~~~~~~~~~~ 89 (199) ++...-+.+.+.+.+..+|.++++.|+.+=..-.++....|..|++.+-.+||-|+.+|.|-+-..|-.-+.+|. +..+ T Consensus 3 ll~v~~v~G~v~VasnpSPyfgalgLV~~a~~GC~il~~~G~sFlsLvLfLIYLGGMLVVFaYS~ALaae~yPe~-wg~~ 81 (162) T MTH00214 3 ILMFLFLLGLMMVIRAPSPYFGALGLVVLALVGCFLLLQMGGSFLSLILVLIYLGGMLVVFSYSAALAADLYPEP-WGMT 81 (162) T ss_pred EEHHHHHHHHHEEECCCCHHHHHHHHHHHHHCHHHHHHHCCCCHHHHHHHHHHHCCEEEEEEEEHHHHCCCCCCC-CCCC T ss_conf 641678761214786897488859999988331351441698489999999983987996665445666788731-2673 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 10012468999999999999977662156665543446113899999998752699999999999999999999975058 Q gi|254780862|r 90 RGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR 169 (199) Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~L~t~y~~~fel~sviLLvamiGAi~La~~~~~ 169 (199) .... .... .........+.................+-...-..+|+.=..-+.+.+-.|+.++.-..-++|..++ T Consensus 82 ~v~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~Gg~~l~~~gw~LlltLfvVLEltRG~~r 156 (162) T MTH00214 82 SVLL-YALF----GTLLILMIGWPFLEGFCEISWWSLYSLNFFYLLFGLYERGGLLLVLAGWVLLLLLFSILEVVRGVKW 156 (162) T ss_pred EEEE-EEEE----EEEEEEEEEEEEECCEEECCEEEEEECCCCEEEEEEECCCHHHHHHHHHHHHHHHHEEEEEECCCCC T ss_conf 5645-7789----8999999999995877961507996357528998851487899889999999986478999057871 Q ss_pred CCCC Q ss_conf 8754 Q gi|254780862|r 170 DIKR 173 (199) Q Consensus 170 ~~kr 173 (199) +.-| T Consensus 157 G~lR 160 (162) T MTH00214 157 GALR 160 (162) T ss_pred CEEE T ss_conf 7171 No 26 >PRK06280 hypothetical protein; Provisional Probab=96.55 E-value=0.027 Score=30.91 Aligned_cols=73 Identities=18% Similarity=0.159 Sum_probs=66.4 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999999999999999972428999999999999999999980870799999999999999999999998 Q gi|254780862|r 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMM 76 (199) Q Consensus 4 ~~i~F~~~a~l~i~sal~vi~~kn~v~s~l~Li~~f~~vAgl~~lL~aeFla~~qIlVYvGAI~VLflFvIMl 76 (199) +..+-|+...+++.|++.+...|+...++...-..-++.|-+|.+|-||=+|+.|=++-++-.-++|.|.|-= T Consensus 2 ~~~i~yii~~l~ilsai~al~qrDLlk~~Vl~g~~gl~~A~Lf~~LlAPDVAlTeAiiG~Ai~pa~faftv~r 74 (80) T PRK06280 2 SIYIDYIIMILVLLSAIGALIQKDLIKCAVLTGLGGLGLAYLFQSLLAPDVALTEAILGGAILPAFFAFTVRR 74 (80) T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 1409999999999999999999999999999813888999999998286389999998504999999999999 No 27 >MTH00138 ND6 NADH dehydrogenase subunit 6; Provisional Probab=96.50 E-value=0.00067 Score=39.67 Aligned_cols=165 Identities=13% Similarity=0.233 Sum_probs=96.9 Q ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH Q ss_conf 99999999999999999724289999999999999999999808707999999999999999999999981731112123 Q gi|254780862|r 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86 (199) Q Consensus 7 ~F~~~a~l~i~sal~vi~~kn~v~s~l~Li~~f~~vAgl~~lL~aeFla~~qIlVYvGAI~VLflFvIMll~~~~~~~~~ 86 (199) +++++...-+.+...+.+..+|.++++.|+..=..-.++....|..|++.+-.+||-|+..|.|.+.+-+..-+.+|. + T Consensus 4 ~~~ll~~~~v~g~v~v~snPsPyygal~LV~~a~~gc~il~~~G~sFlsLVLfLIYLGGMLVVFaYs~Alaae~yPe~-~ 82 (173) T MTH00138 4 LMSLLLFGLVLGLVAVASNPSPYFAALGLVVVAGVGCGVLVGHGGSFLSLVLFLIYLGGMLVVFAYSAALAAEPYPES-W 82 (173) T ss_pred HHHHHHHHHHHEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCEEEEEEEEEEEECCCCCCC-C T ss_conf 699999999852678987884678899999999866896863497189999999986886999998876544788843-5 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCCCCCCCCCC--HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 322100124689999999999999776621-5666554344611--389999-999875269999999999999999999 Q gi|254780862|r 87 RKKRGFLGSFFIGILAAELIVCASNFMVFS-AEGELSRLVFKGN--NVENIG-KVLYTQYAYPLEISGFILLLSMIGAIV 162 (199) Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~iG-~~L~t~y~~~fel~sviLLvamiGAi~ 162 (199) .... ...................+..+. ..........+.+ +.+..| ..+|+.=..-+-+.+--||.++.-++. T Consensus 83 ~~~~--v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~Gv~~lY~~Gg~~L~~~gw~LLltLfvVLe 160 (173) T MTH00138 83 GSRS--VLGYVVMYLLGVVLAAGLFWGGWYEGSWVVVDELKEFSVLRGDVGGVALMYSSGGGMLVLCAWVLLLTLFVVLE 160 (173) T ss_pred CCEE--EEEEEEEEEEEEEEEEEEEECCEECCEEEEEECCCCEEEEEEECEEEEEEECCCHHHHHHHHHHHHHHHHEEEE T ss_conf 4707--99999999999999999995832343169998068507993016799986108799999999999998754699 Q ss_pred HHHHCCCCCCCC Q ss_conf 997505887546 Q gi|254780862|r 163 LMLRHRRDIKRQ 174 (199) Q Consensus 163 La~~~~~~~krq 174 (199) ++|-..++.-|+ T Consensus 161 l~RG~~rG~LRa 172 (173) T MTH00138 161 LTRGLSRGALRA 172 (173) T ss_pred EECCCCCCEEEE T ss_conf 954577316703 No 28 >MTH00166 ND6 NADH dehydrogenase subunit 6; Provisional Probab=96.38 E-value=0.056 Score=29.23 Aligned_cols=155 Identities=15% Similarity=0.208 Sum_probs=90.5 Q ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH Q ss_conf 9999999999972428999999999999999999980-870799999999999999999999998173111212332210 Q gi|254780862|r 13 FMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLL-GAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRG 91 (199) Q Consensus 13 ~l~i~sal~vi~~kn~v~s~l~Li~~f~~vAgl~~lL-~aeFla~~qIlVYvGAI~VLflFvIMll~~~~~~~~~~~~~~ 91 (199) ......+..-..++||.--.+.++..-+.++..-... +....+-+-.+||.||.+|+|..+.-+.. .|.-+.+.+. T Consensus 7 ~~~~~~s~~f~~~~hPl~m~l~li~~tl~~sl~~~~~~~s~WfsyiLfLI~iGGmlVlF~Y~~Sl~~--Nekf~~~~~~- 83 (164) T MTH00166 7 SLSLILSLIFLFSNHPLSMGLMLLIQTLLISLLTGLMMKSFWFSYILFLIFLGGMLVLFIYVTSLAS--NEKFKFSIKL- 83 (164) T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--HHHHHHHHHH- T ss_conf 9999999999987687999999999999999999999976999999999999789999999999641--5566655899- Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC Q ss_conf 01246899999999999997766215666554344611389999999875269999999999999999999997505887 Q gi|254780862|r 92 FLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDI 171 (199) Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~L~t~y~~~fel~sviLLvamiGAi~La~~~~~~~ 171 (199) .......-................... ........+...+......+...........|+.+++-.+-++..++ +. T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~lf~~~~~~~~i~l~~yLl~~Li~Vvki~~~~~-GP 159 (164) T MTH00166 84 LLFFLFILLIMSILLFITDKLLFNNFI---KNTEMKNENSLSLNKLYNFPTMLITLFMIIYLLLTLIVVVKITKIFK-GP 159 (164) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CC T ss_conf 999999999999999986588899888---88888678899999999764899999999999999999999986788-99 Q ss_pred CCC Q ss_conf 546 Q gi|254780862|r 172 KRQ 174 (199) Q Consensus 172 krq 174 (199) -|+ T Consensus 160 LR~ 162 (164) T MTH00166 160 LRS 162 (164) T ss_pred CCC T ss_conf 999 No 29 >MTH00065 ND6 NADH dehydrogenase subunit 6; Provisional Probab=96.23 E-value=0.00077 Score=39.35 Aligned_cols=165 Identities=18% Similarity=0.210 Sum_probs=94.4 Q ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH Q ss_conf 99999999999999999724289999999999999999999808707999999999999999999999981731112123 Q gi|254780862|r 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86 (199) Q Consensus 7 ~F~~~a~l~i~sal~vi~~kn~v~s~l~Li~~f~~vAgl~~lL~aeFla~~qIlVYvGAI~VLflFvIMll~~~~~~~~~ 86 (199) +.+++...-+.+.+.+-+..+|.++++.|+.+=..-.++....|..|++.+..+||-|+.+|.|-+-+-+..-+.+|. + T Consensus 4 ~~~ll~~~~v~G~v~VasnPSPyfgalgLV~~a~~gCg~l~~~GgsFlsLvLfLIYLGGMLVVFaYs~Alaae~yPe~-w 82 (172) T MTH00065 4 LGFLGMLGLVVGLVAVASNPSPYFAALGLVLAAVCGCLVLVELGVSFLSLVLLLIYLGGMLVVFAYSASLAAEPYPEA-W 82 (172) T ss_pred HHHHHHHHHHHEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCEEEEEEEEEEEEECCCCCC-C T ss_conf 699999999632579998884578889999999744660121497089999999986986999999998980788820-1 Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCCCCCCCCCCCCCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 3221001246899999999-999997766215666554344611389999-99987526999999999999999999999 Q gi|254780862|r 87 RKKRGFLGSFFIGILAAEL-IVCASNFMVFSAEGELSRLVFKGNNVENIG-KVLYTQYAYPLEISGFILLLSMIGAIVLM 164 (199) Q Consensus 87 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG-~~L~t~y~~~fel~sviLLvamiGAi~La 164 (199) ..... ............. ......+.................+.+..| ..+|+.=..-+-+.+--|+.++.-..-|+ T Consensus 83 ~~~~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~Gv~~lY~~Gg~~L~v~gw~LlltLFVVLel~ 161 (172) T MTH00065 83 GSWSV-LVYVVFYLLVLILGYILFGCNFSVEFLFTNYDTEFSVVGGDWGGVGLMYSFGGWFLVISGWVLLLTLFVVLEVT 161 (172) T ss_pred CCCEE-EEEEEEEEEEEEEEEEEECCEECCCEEEEECCCCCEEEECCCEEEEEECCCCHHHHHHHHHHHHHHHHEEEEEE T ss_conf 04189-99999999999999999821581257999859855399016879964315988997899999999862899996 Q ss_pred HHCCCCCCC Q ss_conf 750588754 Q gi|254780862|r 165 LRHRRDIKR 173 (199) Q Consensus 165 ~~~~~~~kr 173 (199) |-..++.-| T Consensus 162 RG~~rG~LR 170 (172) T MTH00065 162 RGLSRGSLR 170 (172) T ss_pred ECCCEEEEE T ss_conf 348710780 No 30 >MTH00109 ND6 NADH dehydrogenase subunit 6; Provisional Probab=95.91 E-value=0.00076 Score=39.37 Aligned_cols=70 Identities=21% Similarity=0.500 Sum_probs=61.8 Q ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 9999999999999997242899999999999999999998087079999999999999999999999817 Q gi|254780862|r 9 YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD 78 (199) Q Consensus 9 ~~~a~l~i~sal~vi~~kn~v~s~l~Li~~f~~vAgl~~lL~aeFla~~qIlVYvGAI~VLflFvIMll~ 78 (199) +++...-+.+.+.+.+..+|.++++.|+.+-..-.++....|..|++.+..+||-|+.+|-|-+..-|.. T Consensus 7 ~ll~v~~v~G~v~VasnPSPyfgalgLV~~a~~GCgiL~~~GgsFlsLVLfLIYLGGMLVVFAYS~ALaa 76 (175) T MTH00109 7 FILSVLFVLGFVGFSSKPSPIYGGLGLIVSGGVGCGIVLSFGGSFLGLMVFLIYLGGMLVVFGYTTAMAT 76 (175) T ss_pred HHHHHHHHHEEEEEECCCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHCCEEEEEEEEHHHHC T ss_conf 9999999870246887898067757788845241101000597289999999997887875655325645 No 31 >MTH00115 ND6 NADH dehydrogenase subunit 6; Provisional Probab=95.64 E-value=0.0014 Score=38.00 Aligned_cols=166 Identities=20% Similarity=0.280 Sum_probs=95.5 Q ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH Q ss_conf 99999999999999999724289999999999999999999808707999999999999999999999981731112123 Q gi|254780862|r 7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP 86 (199) Q Consensus 7 ~F~~~a~l~i~sal~vi~~kn~v~s~l~Li~~f~~vAgl~~lL~aeFla~~qIlVYvGAI~VLflFvIMll~~~~~~~~~ 86 (199) +.+++...-+.+.+.+-+..+|.++++.|+..=..-.++....|..|++.+-.+||-|+..|.|-+-+-+..-+.+|. + T Consensus 4 ~~~l~~~~~v~G~v~VasnPSPyfgalgLV~~a~~gC~il~~~GgsFlsLvLfLIYLGGMLVVFaYs~Alaae~yPe~-w 82 (174) T MTH00115 4 FVFLLGVCFVLGVVGVASNPSPYYGVVSLVFAAVFGCGLLVSLGGSFVSLVLFLVYLGGMLVVFAYSVSLAADPYPEA-W 82 (174) T ss_pred HHHHHHHHHHHEEEEEECCCCHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHCCEEEEEEEEEEEECCCCCCC-C T ss_conf 799999999733678998896478779999988603432011497389999999986887999999989971787611-3 Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHCCCCCC-CCCCCCCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 3221001246-8999999999999977662156665-54344611389999-9998752699999999999999999999 Q gi|254780862|r 87 RKKRGFLGSF-FIGILAAELIVCASNFMVFSAEGEL-SRLVFKGNNVENIG-KVLYTQYAYPLEISGFILLLSMIGAIVL 163 (199) Q Consensus 87 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~iG-~~L~t~y~~~fel~sviLLvamiGAi~L 163 (199) ..+....... ...............+......... ........+.+..| ..+|+.=..-+.+.+-.||.++.-..-| T Consensus 83 g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~Gv~~lY~~Gg~~L~~~gw~LlltLfVVLel 162 (174) T MTH00115 83 GSWGVVGYVVGYVLVVLVLGVVLGGLWGMWGFGVVTVDAGGLFVVRLDFSGVSLFYSSGGGGLLVCGWGLLLTLFVVLEL 162 (174) T ss_pred CCCEEEEEEEEEEEEEEEEEEEEECCCCCEEEEEEEECCCEEEEEECCCEEEEHHHHCCHHHHHHHHHHHHHHHHEEEEE T ss_conf 78388899999999999999999632452032278646980499902680851103388999999999999987456999 Q ss_pred HHHCCCCCCC Q ss_conf 9750588754 Q gi|254780862|r 164 MLRHRRDIKR 173 (199) Q Consensus 164 a~~~~~~~kr 173 (199) +|-.+++.-| T Consensus 163 ~RG~~rG~lR 172 (174) T MTH00115 163 VRGLSRGALR 172 (174) T ss_pred ECCCCCEEEC T ss_conf 3466511477 No 32 >PRK05640 putative monovalent cation/H+ antiporter subunit B; Reviewed Probab=94.62 E-value=0.26 Score=25.56 Aligned_cols=65 Identities=28% Similarity=0.277 Sum_probs=53.1 Q ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999999999724289999999999999999999808707999999999999999999999 Q gi|254780862|r 9 YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII 74 (199) Q Consensus 9 ~~~a~l~i~sal~vi~~kn~v~s~l~Li~~f~~vAgl~~lL~aeFla~~qIlVYvGAI~VLflFvI 74 (199) ..++.+.+.-|+.++.+||-.-|....-..-...|.+|.+++||=+|.-|+.|-.|- .-+|.|+- T Consensus 4 i~l~~~~~~~Al~ivl~R~~l~s~il~~~~sll~ALl~vl~~APDVAlT~~~VG~~v-~~lf~fa~ 68 (151) T PRK05640 4 IILGIIAVTLALIVVLHRDFLASLISYSLASLLFALLAMLFRAPDVALSLIVVGGIV-IGLFIFAY 68 (151) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-HHHHHHHH T ss_conf 999999999999999999999999999999999999999955825999999986799-99999999 No 33 >MTH00064 ND6 NADH dehydrogenase subunit 6; Provisional Probab=91.33 E-value=0.04 Score=30.03 Aligned_cols=61 Identities=16% Similarity=0.460 Sum_probs=53.2 Q ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999724289999999999999999999808707999999999999999999999981 Q gi|254780862|r 17 ISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMML 77 (199) Q Consensus 17 ~sal~vi~~kn~v~s~l~Li~~f~~vAgl~~lL~aeFla~~qIlVYvGAI~VLflFvIMll 77 (199) ..-.....+....|+.+-.+-++....-.|...|----..+.++||+|+|=++|+|+=|.. T Consensus 13 ~l~~F~f~sh~l~yc~LLv~nsli~s~i~Y~~~GFSWY~LLf~LVYVGGVYILfIfVSv~~ 73 (151) T MTH00064 13 VLVLFSFSSHPLYYCLLLVVNSLISSLICYLVYGFSWYSLLFCLVYVGGVYILFIFVSVFS 73 (151) T ss_pred HHHHHEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCEEEEEEEEEEEC T ss_conf 9887400288099999999999998756654140199999998513884999999999986 No 34 >MTH00212 ND6 NADH dehydrogenase subunit 6; Provisional Probab=91.13 E-value=0.92 Score=22.61 Aligned_cols=140 Identities=16% Similarity=0.136 Sum_probs=77.4 Q ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH Q ss_conf 99999999724289999999999999999999808707999999999999999999999981731112123322100124 Q gi|254780862|r 16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGS 95 (199) Q Consensus 16 i~sal~vi~~kn~v~s~l~Li~~f~~vAgl~~lL~aeFla~~qIlVYvGAI~VLflFvIMll~~~~~~~~~~~~~~~~~~ 95 (199) ....+..-...+|.-=..+....=+....+--..-..-.|-+-=+||+|+..|+|-.+.-+..- .......... T Consensus 6 ~sl~~~~plm~qPLsLG~~il~~tl~~c~i~a~~~ssWygyiLFLIYVGGlLVMFaYvaALsPN-----~~~~~~~~~~- 79 (154) T MTH00212 6 LGLVVLFPLIVHPLSLGFSLLVISLLCCMIVAVELAVWFGYSVFLVYVGGILVMFGYMVALTPN-----FGGFGFNSFW- 79 (154) T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----CCCCCHHHHH- T ss_conf 9999999984381889999999999999999999848999999999990599999999996873-----1154239999- Q ss_pred HHHHHHHHHHHHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 6899999999999997766215-666554344611389999999875-269999999999999999999997505 Q gi|254780862|r 96 FFIGILAAELIVCASNFMVFSA-EGELSRLVFKGNNVENIGKVLYTQ-YAYPLEISGFILLLSMIGAIVLMLRHR 168 (199) Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~iG~~L~t~-y~~~fel~sviLLvamiGAi~La~~~~ 168 (199) .....+.. ......+. +.+.+.. ....+.+.-|..++++ +..-....+++||.+++..+-+...++ T Consensus 80 -~~~~~~~~-----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~s~~n~~ili~L~~iLL~~LivVVKICyy~~ 147 (154) T MTH00212 80 -SLGVVVFV-----VNLCLGGGFDLSGTSG-VSLLEPEKSGSQLLSYKNISILLFLGGMLLIALLVVVKLCYYYK 147 (154) T ss_pred -HHHHHHHH-----HHHHHCCCCCCCCCCH-HHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHEEEEECCC T ss_conf -99999999-----9999714323466510-44400100035211479857999999999999997403320268 No 35 >PRK07377 hypothetical protein; Provisional Probab=88.90 E-value=1.4 Score=21.58 Aligned_cols=67 Identities=24% Similarity=0.348 Sum_probs=51.1 Q ss_pred HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999999999972428999999999999999999980870799999999999999999999998 Q gi|254780862|r 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMM 76 (199) Q Consensus 8 F~~~a~l~i~sal~vi~~kn~v~s~l~Li~~f~~vAgl~~lL~aeFla~~qIlVYvGAI~VLflFvIMl 76 (199) -|++..+.=..+++.++..||.|+..+=-..-.-.|-+|.++||+=+|..+-+| |.....-+++|-. T Consensus 5 iyvi~~llpl~~~~~v~q~np~~alv~rgilg~~aal~y~llga~dvaltealv--gt~l~~~ly~vav 71 (185) T PRK07377 5 LYVITALLPLTALLLVLQVNPYHALVIRGILGAIAALVYALLGAADVALTEALV--GTMLSITLYAVAV 71 (185) T ss_pred EEEHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH--HHHHHHHHHHHHH T ss_conf 551998888988875014583589999999999999999981882599999999--9999999999998 No 36 >pfam03137 OATP Organic Anion Transporter Polypeptide (OATP) family. This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules). Thus, Tamai et al. initiated the current scheme of using digits for rat OATPs and letters for human ones. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. Thi Probab=85.58 E-value=2.2 Score=20.50 Aligned_cols=32 Identities=22% Similarity=0.311 Sum_probs=22.3 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 4461138999999987526999999999999999999 Q gi|254780862|r 125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAI 161 (199) Q Consensus 125 ~~~~~~~~~iG~~L~t~y~~~fel~sviLLvamiGAi 161 (199) ..+.+|.+.+|. ||+-|.+.+.++++.-+=-. T Consensus 214 ~i~~~dprWvGA-----WWLGfli~g~~~~~~aipl~ 245 (582) T pfam03137 214 IITPTDPRWVGA-----WWLGFLVCGGLLLLSAIPFF 245 (582) T ss_pred CCCCCCHHHHHH-----HHHHHHHHHHHHHHHHHHHH T ss_conf 678788147778-----88899999999999999998 No 37 >COG2851 CitM H+/citrate symporter [Energy production and conversion] Probab=82.03 E-value=3.2 Score=19.65 Aligned_cols=41 Identities=27% Similarity=0.382 Sum_probs=31.6 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHH Q ss_conf 99987526999999999999999999999750588754689999 Q gi|254780862|r 136 KVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ 179 (199) Q Consensus 136 ~~L~t~y~~~fel~sviLLvamiGAi~La~~~~~~~krq~~~~q 179 (199) +++ ..+..|-.++|+++..+ =|..+.+|||+|.++.|..+. T Consensus 172 ~el-~~pliP~~i~Gl~~vl~--lA~~lG~kErkRlg~~~~~~~ 212 (433) T COG2851 172 AEL-FVPLIPIQIIGLVLVLA--LAWLLGKKERKRLGVIDLSEE 212 (433) T ss_pred HHH-HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCCHH T ss_conf 998-75014899999999999--999963799987620668613 No 38 >TIGR00805 oat sodium-independent organic anion transporter; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced . Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane. Probab=81.72 E-value=1.9 Score=20.83 Aligned_cols=120 Identities=12% Similarity=0.135 Sum_probs=64.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHCCCCCCC-----CCCCC Q ss_conf 999999999999999999998173111212332210012468999999999999977---6621566655-----43446 Q gi|254780862|r 56 MITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF---MVFSAEGELS-----RLVFK 127 (199) Q Consensus 56 ~~qIlVYvGAI~VLflFvIMll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-----~~~~~ 127 (199) +.|++.=.|+ ..++-++|-.+|-..+ .+....+++....+.+++-++..+... ..+......+ ..... T Consensus 178 ~~~~l~GIG~-tP~~~lGisy~ddf~~---~~~sply~gi~~~~~v~GP~~G~llgS~~~~~y~D~~~~nt~qil~~~~~ 253 (723) T TIGR00805 178 VAQLLRGIGE-TPIFPLGISYIDDFAK---SKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEQILDVILT 253 (723) T ss_pred HHHHHHHCCC-CCCCCCCCCEEECCCC---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHEECCCC T ss_conf 9999741488-7654567641112566---44423799999999998899999998776753102688886671241378 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCH Q ss_conf 113899999998752699999999999999999999975058875468999950084 Q gi|254780862|r 128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184 (199) Q Consensus 128 ~~~~~~iG~~L~t~y~~~fel~sviLLvamiGAi~La~~~~~~~krq~~~~q~~~~~ 184 (199) .+|.+.+|. ||+-|.+.|-+.+.+-+==.-+=++.+++.+|++...+..++. T Consensus 254 p~DprWiGA-----WW~GFl~~~~v~~~~s~PlfffPk~l~~~~~~~~~~~~~~~~~ 305 (723) T TIGR00805 254 PTDPRWIGA-----WWLGFLICSGVALLTSLPLFFFPKALPKEGKRKNVDVHEAEKL 305 (723) T ss_pred CCCCCEEHH-----HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH T ss_conf 998534317-----8999999999999998557636552532356778777888887 No 39 >pfam05454 DAG1 Dystroglycan (Dystrophin-associated glycoprotein 1). Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in human. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton. [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin rece Probab=80.60 E-value=2.1 Score=20.69 Aligned_cols=55 Identities=13% Similarity=0.140 Sum_probs=31.8 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCHHHCEEEEE Q ss_conf 999875269999999999999999999997505887546899995008431568752 Q gi|254780862|r 136 KVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNSIVMVK 192 (199) Q Consensus 136 ~~L~t~y~~~fel~sviLLvamiGAi~La~~~~~~~krq~~~~q~~~~~~~~i~~v~ 192 (199) ...+...+.+..++.++|++|+|.++..- |+| +.|-..-.||..|.++-.+-.-| T Consensus 143 d~yL~TviPavivaaiLliA~iia~icYr-rrR-kGKl~~Eer~sFi~KGiPVIF~D 197 (290) T pfam05454 143 DVYLHTVIPAVVVAAILLIAGIIAMICYR-KKR-KGKLTLEDQATFIKKGVPIIFAD 197 (290) T ss_pred CCEEEEHHHHHHHHHHHHHHHHHHHHHCC-CCC-CCCCCHHHHHHHHHCCCCEECCC T ss_conf 10110067899999999999999999650-212-57776106667876598676343 No 40 >KOG3626 consensus Probab=78.39 E-value=4.3 Score=18.97 Aligned_cols=45 Identities=20% Similarity=0.244 Sum_probs=28.3 Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 55434461138999999987526999999999999999999999750588 Q gi|254780862|r 121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD 170 (199) Q Consensus 121 ~~~~~~~~~~~~~iG~~L~t~y~~~fel~sviLLvamiGAi~La~~~~~~ 170 (199) ..+......|.+.+|. ||+-|.+.+.+++.+-+--.-.-++.++. T Consensus 305 ~~~~~it~~DPrWIGA-----WWlGFLi~g~~~~~~a~p~f~fPk~lp~~ 349 (735) T KOG3626 305 LSPIGITPTDPRWIGA-----WWLGFLICGALLLFSAVPLFFFPKELPKS 349 (735) T ss_pred CCCCCCCCCCCCHHHH-----HHHHHHHHHHHHHHHHHHHHHCCCCCCCC T ss_conf 6888878889414668-----88999999999999998998386568632 No 41 >pfam06664 MIG-14_Wnt-bd Wnt-binding factor required for Wnt secretion. MIG-14 is a Wnt-binding factor. Newly synthesized EGL-20/Wnt binds to MIG-14 in the Golgi, targetting the Wnt to the cell membrane for secretion. AP-2-mediated endocytosis and retromer retrieval at the sorting endosome would recycle MIG-14 to the Golgi, where it can bind to EGL-20/Wnt for next cycle of secretion. Probab=68.05 E-value=7.8 Score=17.54 Aligned_cols=65 Identities=18% Similarity=0.149 Sum_probs=42.8 Q ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 998087079999999999999999999999817311-12123322100124689999999999999 Q gi|254780862|r 46 FLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI-EVAEPRKKRGFLGSFFIGILAAELIVCAS 110 (199) Q Consensus 46 ~~lL~aeFla~~qIlVYvGAI~VLflFvIMll~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (199) -+..+++|..++..+...--.+.|..|.....|... +.+++..+-+.+....++......+.... T Consensus 107 ~~~~~~~~~~ll~~i~q~~F~~~Ll~FwLv~~~~~r~~~~r~~~~~y~pki~~v~~~~~~~~i~~~ 172 (291) T pfam06664 107 TLLMPSPFMLLLDDIRQGIFYCYLLLFWLVFYDELRLENERKNLKFYLPKLIVVGIIWLALLVLDI 172 (291) T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 887457289999999999999999999999942876322454302158899999999999999999 No 42 >PRK10532 threonine and homoserine efflux system; Provisional Probab=66.24 E-value=8.5 Score=17.34 Aligned_cols=44 Identities=14% Similarity=0.144 Sum_probs=33.8 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC Q ss_conf 99999998752699999999999999999999975058875468 Q gi|254780862|r 132 ENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD 175 (199) Q Consensus 132 ~~iG~~L~t~y~~~fel~sviLLvamiGAi~La~~~~~~~krq~ 175 (199) ...|..++++..-+.|..++.+-++-.-...++.|++.+.|..| T Consensus 250 al~G~llLgE~ls~~q~lGialVv~As~g~~lt~~r~p~~~~~~ 293 (293) T PRK10532 250 AVSGMIFLGETLTLIQWLALGAIIAASMGSTLTIRREPKIKEVD 293 (293) T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC T ss_conf 99999995688979999999999999999997057898766789 No 43 >PRK10683 putrescine transporter subunit: membrane component of ABC superfamily; Provisional Probab=52.83 E-value=15 Score=16.01 Aligned_cols=44 Identities=25% Similarity=0.494 Sum_probs=21.9 Q ss_pred CCCHHHHHHHHHHHHHHH----HHH-HHHHHHHHHHHHHHH-HHHHCCCC Q ss_conf 611389999999875269----999-999999999999999-99750588 Q gi|254780862|r 127 KGNNVENIGKVLYTQYAY----PLE-ISGFILLLSMIGAIV-LMLRHRRD 170 (199) Q Consensus 127 ~~~~~~~iG~~L~t~y~~----~fe-l~sviLLvamiGAi~-La~~~~~~ 170 (199) .+++...+|+.+++++.- |+- ..|++|++-++-.+. ..|+++++ T Consensus 263 GG~~~~~i~~~i~~~f~~~~dwp~aaAlavvLl~i~iv~~~~~~r~~~k~ 312 (317) T PRK10683 263 GGPDSIMIGRVLWQEFFNNRDWPVASAVAIIMLLLLIVPIMWFHKHQQKS 312 (317) T ss_pred CCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 29985629999999998746805899999999999999999999998874 No 44 >PRK07375 putative monovalent cation/H+ antiporter subunit C; Reviewed Probab=48.88 E-value=17 Score=15.66 Aligned_cols=47 Identities=13% Similarity=0.229 Sum_probs=29.3 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 99999999999999999999724289999999999999999999808 Q gi|254780862|r 4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLG 50 (199) Q Consensus 4 ~~i~F~~~a~l~i~sal~vi~~kn~v~s~l~Li~~f~~vAgl~~lL~ 50 (199) +...++....+...+...++..||.++-.+.+...--++--+++.+| T Consensus 2 ~~~~~~~~~~l~~iG~y~ll~~~nlik~vigl~i~~~av~L~~i~~g 48 (112) T PRK07375 2 QLMIYATILALLVIGLYGLIFKRNLLKKIIGLDVFQTGVNLFYIAIG 48 (112) T ss_pred CHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 36999999999999999999654199999999999866999888750 No 45 >COG5416 Uncharacterized integral membrane protein [Function unknown] Probab=48.14 E-value=17 Score=15.76 Aligned_cols=26 Identities=35% Similarity=0.663 Sum_probs=15.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9987526999999999999999999999 Q gi|254780862|r 137 VLYTQYAYPLEISGFILLLSMIGAIVLM 164 (199) Q Consensus 137 ~L~t~y~~~fel~sviLLvamiGAi~La 164 (199) .++..+-+|..+ ++|+.++.|++.-. T Consensus 52 ~lfg~~~~PLil--vil~s~v~G~Li~~ 77 (98) T COG5416 52 YLFGQWELPLIL--VILGAAVVGALIAM 77 (98) T ss_pred EECCHHHHHHHH--HHHHHHHHHHHHHH T ss_conf 643133304999--99999999999999 No 46 >TIGR03663 conserved hypothetical protein TIGR03663. Members of this protein family, uncommon and rather sporadically distributed, are found almost always in the same genomes as members of family TIGR03662, and frequently as a nearby gene. Members show some N-terminal sequence similarity with pfam02366, dolichyl-phosphate-mannose-protein mannosyltransferase. The few invariant residues in this family, found toward the N-terminus, include a dipeptide DE, a tripeptide HGP, and two different Arg residues. Up to three members may be found in a genome. The function is unknown. Probab=46.84 E-value=19 Score=15.48 Aligned_cols=59 Identities=17% Similarity=0.279 Sum_probs=37.8 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH Q ss_conf 799999999999999999999724289999999999999999999808707999999999999999 Q gi|254780862|r 3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV 68 (199) Q Consensus 3 ~~~i~F~~~a~l~i~sal~vi~~kn~v~s~l~Li~~f~~vAgl~~lL~aeFla~~qIlVYvGAI~V 68 (199) -.|+...+|..+++++.+.-..++++- |+...-.+.|..+-.-+ -+.+.+.+..|+... T Consensus 121 R~Di~~~~ftl~~~~~~~Ry~dt~~~r----yl~laa~~lal~~~tKE---~~~l~~~~f~~a~~l 179 (439) T TIGR03663 121 RNDIFVAFFTLLAVGAAFRYLDTGKRR----YLFLAASALALAFTSKE---NAYLIILIFGGLLAI 179 (439) T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCC----HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH T ss_conf 713999999999999999999478702----79999999999999646---899999999999999 No 47 >PRK09497 potB spermidine/putrescine ABC transporter membrane protein; Reviewed Probab=46.64 E-value=19 Score=15.46 Aligned_cols=76 Identities=20% Similarity=0.240 Sum_probs=34.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHC-C Q ss_conf 46899999999999997766215666554344611389999999875269999-----99999999999999999750-5 Q gi|254780862|r 95 SFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLE-----ISGFILLLSMIGAIVLMLRH-R 168 (199) Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~L~t~y~~~fe-----l~sviLLvamiGAi~La~~~-~ 168 (199) ...-+.....++........+.... ...+++...++...|+++.-.+. ..|++|++-+.....+..|. | T Consensus 202 l~~Pgi~~~~il~fi~s~~~F~~~~-----~lgG~~~~~l~~~i~~~~~~~~~~~~aaA~svil~~i~~~~~~i~~r~~k 276 (285) T PRK09497 202 LTMPGIIAGCLLVLLPAMGMFYVSD-----LLGGAKNLLIGNVIKSQFLNIRDWPFGAATSITLTIVMGLMLLVYYRASK 276 (285) T ss_pred HHHHHHHHHHHHHHHHHHHHHHEEE-----ECCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 1089999999999999988762100-----10489755299999999987069069999999999999999999999999 Q ss_pred CCCCCCC Q ss_conf 8875468 Q gi|254780862|r 169 RDIKRQD 175 (199) Q Consensus 169 ~~~krq~ 175 (199) .-.||.+ T Consensus 277 ~~~kk~~ 283 (285) T PRK09497 277 LLNKKVE 283 (285) T ss_pred HHCCHHC T ss_conf 9530141 No 48 >COG2991 Uncharacterized protein conserved in bacteria [Function unknown] Probab=38.57 E-value=26 Score=14.75 Aligned_cols=32 Identities=22% Similarity=0.124 Sum_probs=22.3 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH Q ss_conf 95799999999999999999999724289999 Q gi|254780862|r 1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSV 32 (199) Q Consensus 1 M~~~~i~F~~~a~l~i~sal~vi~~kn~v~s~ 32 (199) |..-.+.|.+|-.++.+-+++.+..|.|+... T Consensus 1 M~t~lltFg~Fllvi~gMsiG~I~krk~I~GS 32 (77) T COG2991 1 MTTFLLTFGIFLLVIAGMSIGYIFKRKSIKGS 32 (77) T ss_pred CCCHHHHHHHHHHHHHHHHHHHHEECCCCCCC T ss_conf 91579999999999999767643024503665 No 49 >COG1006 MnhC Multisubunit Na+/H+ antiporter, MnhC subunit [Inorganic ion transport and metabolism] Probab=37.15 E-value=27 Score=14.62 Aligned_cols=43 Identities=21% Similarity=0.254 Sum_probs=26.6 Q ss_pred HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 9999999999999999724289999999999999999999808 Q gi|254780862|r 8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLG 50 (199) Q Consensus 8 F~~~a~l~i~sal~vi~~kn~v~s~l~Li~~f~~vAgl~~lL~ 50 (199) +++.+.+.+.+|+..+.+||.++-.+.|-..--++--.++.+| T Consensus 5 ~~~~~~~l~~iG~ylil~~nlik~iigl~i~~~~vnL~i~~~G 47 (115) T COG1006 5 LYLTIGILVGIGVYLLLSRNLIKKIIGLSLIGTGVNLFLLLIG 47 (115) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 9999999999999999633499999999999866989864321 No 50 >COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] Probab=35.62 E-value=19 Score=15.41 Aligned_cols=28 Identities=29% Similarity=0.377 Sum_probs=22.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 8999999987526999999999999999 Q gi|254780862|r 131 VENIGKVLYTQYAYPLEISGFILLLSMI 158 (199) Q Consensus 131 ~~~iG~~L~t~y~~~fel~sviLLvami 158 (199) -.-.|..+|..||+||-+++++-|-..= T Consensus 712 ~~ivGlv~FlqyWYWfPL~hf~SLsf~P 739 (926) T COG5116 712 DRIVGLVLFLQYWYWFPLIHFVSLSFLP 739 (926) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 7888999999999987899888663275 No 51 >pfam00124 Photo_RC Photosynthetic reaction centre protein. Probab=34.11 E-value=30 Score=14.34 Aligned_cols=44 Identities=23% Similarity=0.243 Sum_probs=25.2 Q ss_pred HHHHHHHHHH------HHHHHHHHHHHHH--HHCCCCCCCCCHHHHHHCCHH Q ss_conf 2699999999------9999999999999--750588754689999500843 Q gi|254780862|r 142 YAYPLEISGF------ILLLSMIGAIVLM--LRHRRDIKRQDISKQLESNPD 185 (199) Q Consensus 142 y~~~fel~sv------iLLvamiGAi~La--~~~~~~~krq~~~~q~~~~~~ 185 (199) |.-||-..|+ -||-||=|+.+++ +++++|.-+|..++.-..|++ T Consensus 147 ~ynPfHml~I~f~~gsaLl~AmHGatIls~~~~~~~~~~~q~~~~g~~~e~e 198 (257) T pfam00124 147 HYNPFHMLGIAFLFGSALLLAMHGATILSVLRFGGGEEVEQITDRGTGQERE 198 (257) T ss_pred CCCHHHHHHHHHHHHHHHHHHHHCHHHEEEECCCCCCHHHHHCCCCCCHHHH T ss_conf 1483887525898735999986020203441268984033311578754789 No 52 >COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism] Probab=27.67 E-value=39 Score=13.72 Aligned_cols=161 Identities=16% Similarity=0.142 Sum_probs=69.5 Q ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH Q ss_conf 9999999999724289999999999999999999808--70799999999999999999999998173111212332210 Q gi|254780862|r 14 MAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLG--AEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRG 91 (199) Q Consensus 14 l~i~sal~vi~~kn~v~s~l~Li~~f~~vAgl~~lL~--aeFla~~qIlVYvGAI~VLflFvIMll~~~~~~~~~~~~~~ 91 (199) -++..|+.+-...+|.+...-.+..|++- .+-..| -.|=|.-++=|- .+.-.-=...+....--..-....+. T Consensus 38 GALifaiiv~~~~~p~~T~~~~iv~~isG--~~Ws~GQ~~Qfka~~~iGVS---kamPiStG~QLVg~sL~gV~~f~EW~ 112 (288) T COG4975 38 GALIFAIIVFLFVSPELTLTIFIVGFISG--AFWSFGQANQFKAIQLIGVS---KAMPISTGMQLVGTSLFGVFVFHEWT 112 (288) T ss_pred HHHHHHHHHHEEECCCCCHHHHHHHHHHH--HHHHHHHHHHHHHEEEEEEE---CCCCCCCHHHHHHCEEEEEEEEECCC T ss_conf 99999987730326763255678998746--67621125423210021000---13666511567530006689970168 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHH---------HHHHHHHH--HHHHHHHHHHHHHHHHH--- Q ss_conf 01246899999999999997766215666554344611389---------99999987--52699999999999999--- Q gi|254780862|r 92 FLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVE---------NIGKVLYT--QYAYPLEISGFILLLSM--- 157 (199) Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~iG~~L~t--~y~~~fel~sviLLvam--- 157 (199) .+...+.+..+..++........+. ...+....+..|.+ ++|+.+|. .-.+.++-.+.+|=-|+ T Consensus 113 t~~~~IlG~iAliliviG~~lTs~~--~~~nk~~~~~~n~kkgi~~L~iSt~GYv~yvvl~~~f~v~g~saiLPqAiGMv 190 (288) T COG4975 113 TPTQIILGFIALILIVIGIYLTSKQ--DRNNKEEENPSNLKKGIVILLISTLGYVGYVVLFQLFDVDGLSAILPQAIGMV 190 (288) T ss_pred CCHHHHHHHHHHHHHHHHHEEEEEE--CCCCCCCCCHHHHHHHEEEEEEECCCEEEEEEEECCCCCCCHHHHHHHHHHHH T ss_conf 6145789999999998761575410--44421214767665232356663121366576610015541320127787799 Q ss_pred HHHHHHHHHCCCCCCCCCHHHHHH Q ss_conf 999999975058875468999950 Q gi|254780862|r 158 IGAIVLMLRHRRDIKRQDISKQLE 181 (199) Q Consensus 158 iGAi~La~~~~~~~krq~~~~q~~ 181 (199) +||+.+.+++++...++...+++. T Consensus 191 ~~ali~~~~~~~~~~~K~t~~nii 214 (288) T COG4975 191 IGALILGFFKMEKRFNKYTWLNII 214 (288) T ss_pred HHHHHHHHCCCCCCHHHHHHHHHH T ss_conf 999998651565306788999876 No 53 >KOG0510 consensus Probab=27.36 E-value=22 Score=15.11 Aligned_cols=52 Identities=17% Similarity=0.353 Sum_probs=26.1 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCCH----------------HHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 289999999999999999999808707----------------9999999999999999999999817 Q gi|254780862|r 27 NPIYSVFSLIFAFVNAAGLFLLLGAEF----------------VAMITLVVYVGAVIVFFLFIIMMLD 78 (199) Q Consensus 27 n~v~s~l~Li~~f~~vAgl~~lL~aeF----------------la~~qIlVYvGAI~VLflFvIMll~ 78 (199) +=+-..-..+-.++-+++++..+.+-+ ++.+-.+.|+|---+.=+|++|+.. T Consensus 590 ~Y~~~i~Nimew~iyts~li~v~~~~~~~~~~~Q~~laa~aV~l~W~nllLmi~~~p~~gIfvvM~~~ 657 (929) T KOG0510 590 HYFMDIENIMEWFIYTSALITVYPLFFEITAHLQWVLAAFAVLLGWMNLLLMIGRFPVFGIFVVMLEV 657 (929) T ss_pred HHHHHHHHHHHHHHHHHHHHEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHH T ss_conf 88761577889998760363141202021899999999999999999999997347755441378999 No 54 >PRK11462 putative transporter; Provisional Probab=27.10 E-value=40 Score=13.66 Aligned_cols=20 Identities=30% Similarity=0.194 Sum_probs=7.8 Q ss_pred HHHHHHHHHHHHHHHHHHCC Q ss_conf 99999999999999998173 Q gi|254780862|r 60 VVYVGAVIVFFLFIIMMLDI 79 (199) Q Consensus 60 lVYvGAI~VLflFvIMll~~ 79 (199) ++-+|.-....+.--|+-|. T Consensus 327 ~~g~~~~~~~~l~~am~aDv 346 (460) T PRK11462 327 VIGVLHQLVTPIQWVMMSDT 346 (460) T ss_pred HHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999999986658 No 55 >pfam06365 CD34_antigen CD34/Podocalyxin family. This family consists of several mammalian CD34 antigen proteins. The CD34 antigen is a human leukocyte membrane protein expressed specifically by lymphohematopoietic progenitor cells. CD34 is a phosphoprotein. Activation of protein kinase C (PKC) has been found to enhance CD34 phosphorylation. This family contains several eukaryotic podocalyxin proteins. Podocalyxin is a major membrane protein of the glomerular epithelium and is thought to be involved in maintenance of the architecture of the foot processes and filtration slits characteristic of this unique epithelium by virtue of its high negative charge. Podocalyxin functions as an anti-adhesin that maintains an open filtration pathway between neighbouring foot processes in the glomerular epithelium by charge repulsion. Probab=26.54 E-value=41 Score=13.60 Aligned_cols=33 Identities=24% Similarity=0.183 Sum_probs=24.3 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC Q ss_conf 269999999999999999999997505887546 Q gi|254780862|r 142 YAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ 174 (199) Q Consensus 142 y~~~fel~sviLLvamiGAi~La~~~~~~~krq 174 (199) .+...-+.|++||++..+..+.-++++.-.|+| T Consensus 102 lIaLV~~gs~llLi~~~~~~Y~c~qRrs~~~~~ 134 (202) T pfam06365 102 LIALVTSGGFLLLIAAIYTGYCCHQRRSWRKDQ 134 (202) T ss_pred EEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC T ss_conf 765287647999999998778753000677665 No 56 >KOG2062 consensus Probab=26.24 E-value=42 Score=13.57 Aligned_cols=30 Identities=23% Similarity=0.294 Sum_probs=24.4 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 899999998752699999999999999999 Q gi|254780862|r 131 VENIGKVLYTQYAYPLEISGFILLLSMIGA 160 (199) Q Consensus 131 ~~~iG~~L~t~y~~~fel~sviLLvamiGA 160 (199) -..+|...|+.||+||-++.++-|.+-=-+ T Consensus 715 ~~vvGl~~Flq~WyWfPL~~flSLaf~PT~ 744 (929) T KOG2062 715 DAVVGLVVFLQYWYWFPLIHFLSLAFTPTT 744 (929) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCE T ss_conf 878999999888998789999998627606 No 57 >KOG3817 consensus Probab=25.67 E-value=43 Score=13.51 Aligned_cols=38 Identities=21% Similarity=0.252 Sum_probs=14.2 Q ss_pred CCCCCCCCCCCCCHHHHHHHHHH--HHHHHHHHHHHHHHHH Q ss_conf 56665543446113899999998--7526999999999999 Q gi|254780862|r 117 AEGELSRLVFKGNNVENIGKVLY--TQYAYPLEISGFILLL 155 (199) Q Consensus 117 ~~~~~~~~~~~~~~~~~iG~~L~--t~y~~~fel~sviLLv 155 (199) +..+.+.....+. .+.+|..+. +-...-+-++.+|+.. T Consensus 247 p~d~RS~~ilmWt-Lqli~lvl~Yfsvq~p~~a~A~iI~~l 286 (452) T KOG3817 247 PKDPRSQTILMWT-LQLIGLVLAYFSVQHPSAAIAAIIMVL 286 (452) T ss_pred CCCCCHHHHHHHH-HHHHHHHHHHHHCCCHHHHHHHHHHHH T ss_conf 9981043599999-999999999985111789999999999 No 58 >pfam04995 CcmD Heme exporter protein D (CcmD). The CcmD protein is part of a C-type cytochrome biogenesis operon. The exact function of this protein is uncertain. It has been proposed that CcmC, CcmD and CcmE interact directly with each other, establishing a cytoplasm to periplasm haem delivery pathway for cytochrome c maturation. This protein is found fused to CcmE in Pseudomonas fluorescens cycJ. These proteins contain a predicted transmembrane helix. Probab=24.41 E-value=46 Score=13.38 Aligned_cols=27 Identities=15% Similarity=0.066 Sum_probs=16.6 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 526999999999999999999999750 Q gi|254780862|r 141 QYAYPLEISGFILLLSMIGAIVLMLRH 167 (199) Q Consensus 141 ~y~~~fel~sviLLvamiGAi~La~~~ 167 (199) -|+.+=--++++.+++++......+|+ T Consensus 5 ~yVw~sygit~l~l~~li~~s~~~~r~ 31 (46) T pfam04995 5 FYVWSSYGITLLVLAGLIVWSLRDRRR 31 (46) T ss_pred EEHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 002999899999999999999998899 No 59 >TIGR01627 A_thal_3515 uncharacterized plant-specific domain TIGR01627; InterPro: IPR006514 These sequences contain an uncharacterised domain found in both Arabidopsis thaliana (at least 10 copies) and Oryza sativa. Most member proteins have only a short stretch of sequence N-terminal to this domain, but one has a long N-terminal extension that includes a protein kinase domain (IPR000719 from INTERPRO). . Probab=23.01 E-value=33 Score=14.14 Aligned_cols=31 Identities=16% Similarity=0.234 Sum_probs=21.5 Q ss_pred HHHHHHHHHHHCCCCCCCCCHHH-HHHCCHHH Q ss_conf 99999999975058875468999-95008431 Q gi|254780862|r 156 SMIGAIVLMLRHRRDIKRQDISK-QLESNPDN 186 (199) Q Consensus 156 amiGAi~La~~~~~~~krq~~~~-q~~~~~~~ 186 (199) ++--|=+|||+++.+..+.|||- ++.|+.++ T Consensus 169 sIyTAavLAR~~~~g~~kTdVFVHDv~R~vE~ 200 (238) T TIGR01627 169 SIYTAAVLARKKEDGSEKTDVFVHDVYRDVEK 200 (238) T ss_pred HHHHHHHHHHCCCCCCCCCCEEEECCCCHHHH T ss_conf 89999887413688595563578616561887 No 60 >COG5336 Uncharacterized protein conserved in bacteria [Function unknown] Probab=22.57 E-value=48 Score=13.25 Aligned_cols=34 Identities=21% Similarity=0.297 Sum_probs=23.7 Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCH Q ss_conf 9999999999999975058875468999950084 Q gi|254780862|r 151 FILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP 184 (199) Q Consensus 151 viLLvamiGAi~La~~~~~~~krq~~~~q~~~~~ 184 (199) +.||.++..++...+|+-..++.|..-..-+++. T Consensus 79 v~lllGf~AG~lnv~Rsag~va~~~~~~~~s~~~ 112 (116) T COG5336 79 VFLLLGFGAGVLNVLRSAGKVAEQGQAPKSSGND 112 (116) T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC T ss_conf 9999999899999999850011456688887666 No 61 >pfam05968 Bacillus_PapR Bacillus PapR protein. This family consists of the Bacillus species specific PapR protein. The papR gene belongs to the PlcR regulon and is located 70 bp downstream from plcR. It encodes a 48-amino-acid peptide. Disruption of the papR gene abolishes expression of the PlcR regulon, resulting in a large decrease in haemolysis and virulence in insect larvae. A processed form of PapR activates the PlcR regulon by allowing PlcR to bind to its DNA target. This activating mechanism is strain specific. Probab=20.98 E-value=54 Score=12.99 Aligned_cols=36 Identities=33% Similarity=0.412 Sum_probs=22.7 Q ss_pred HHHHHHHHHHHHHHHHH---HHCCCCCCCCCHHHHHHCC Q ss_conf 99999999999999999---7505887546899995008 Q gi|254780862|r 148 ISGFILLLSMIGAIVLM---LRHRRDIKRQDISKQLESN 183 (199) Q Consensus 148 l~sviLLvamiGAi~La---~~~~~~~krq~~~~q~~~~ 183 (199) +++-+|..||.-.|.+. .++..-.-.||..-|...| T Consensus 5 LigslltlAM~wGislgdtalek~q~ish~~qeVQlAsd 43 (48) T pfam05968 5 LIGSLLTLAMLWGISLGDTALEKDQAISHQQQEVQLASD 43 (48) T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCHHHHHHHC T ss_conf 886899999995332131344153530255155534302 No 62 >PRK12489 anaerobic C4-dicarboxylate transporter; Reviewed Probab=20.91 E-value=54 Score=12.98 Aligned_cols=42 Identities=19% Similarity=0.282 Sum_probs=21.1 Q ss_pred HHHHHHHH----HHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCHHHC Q ss_conf 99999999----99999999999975058875468999950084315 Q gi|254780862|r 145 PLEISGFI----LLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNS 187 (199) Q Consensus 145 ~fel~svi----LLvamiGAi~La~~~~~~~krq~~~~q~~~~~~~~ 187 (199) .+++.++- ++..+++|.. +.|+++|-++.+.||+...|.+.+ T Consensus 167 ~~~iL~V~iPat~ig~l~~a~~-s~~~GkeL~~DpeyQ~Rl~~~~~~ 212 (440) T PRK12489 167 LLDILAVTIPATLIGVLAAALW-SLRRGKDLDKDPEFQERLKDPEFR 212 (440) T ss_pred HHHHHHEEHHHHHHHHHHHHHH-HHHCCCCCCCCHHHHHHHHCCCCC T ss_conf 7988440273899999999999-971398633398899987376301 No 63 >PRK13718 conjugal transfer protein TrbE; Provisional Probab=20.54 E-value=55 Score=12.94 Aligned_cols=18 Identities=6% Similarity=0.342 Sum_probs=8.1 Q ss_pred HHHHHHHHHHHHHHHCCC Q ss_conf 999999999999981731 Q gi|254780862|r 63 VGAVIVFFLFIIMMLDID 80 (199) Q Consensus 63 vGAI~VLflFvIMll~~~ 80 (199) .+.-.++|.|.--|++.. T Consensus 54 g~~~~~ly~ffs~Ltkl~ 71 (84) T PRK13718 54 GVLLFILYFFFSALTKLQ 71 (84) T ss_pred HHHHHHHHHHHHHHHHHH T ss_conf 799999999999999985 No 64 >TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein; InterPro: IPR005696 Bacteriocins are antibacterial proteinaceous compounds produced by bacteria. In Gram-positive bacteria, they are divided into four classes. Within the class II, constituted by non-modified peptides produced mainly by lactic acid bacteria, bacteriocins of the subclass IIa, such as mesentericin Y105, are of particular interest. They are active against the foodborne pathogen Listeria monocytogenes and share a similar primary structure, with a conserved N-terminal motif (YGNGV). Subclass IIa bacteriocins induce membrane permeabilization of sensitive strains, but their target specificity and their molecular mode of action remain elusive. This family of proteins is involved in the secretion of such bacteriocins although the mechanism of this process is not well understood. ; GO: 0005215 transporter activity, 0006810 transport. Probab=20.28 E-value=56 Score=12.90 Aligned_cols=25 Identities=12% Similarity=0.242 Sum_probs=8.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 2699999999999999999999975 Q gi|254780862|r 142 YAYPLEISGFILLLSMIGAIVLMLR 166 (199) Q Consensus 142 y~~~fel~sviLLvamiGAi~La~~ 166 (199) +.-+.++..+|||+.+++--..|+| T Consensus 20 Fs~l~I~P~~lLLv~~~lFs~fAkk 44 (476) T TIGR01000 20 FSTLVIVPIFLLLVFLVLFSLFAKK 44 (476) T ss_pred CHHHHHHHHHHHHHHHHHHHCCCEE T ss_conf 1268999999999999997220107 Done!