Query         gi|254780862|ref|YP_003065275.1| NADH dehydrogenase subunit J [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 199
No_of_seqs    111 out of 1690
Neff          6.6 
Searched_HMMs 39220
Date          Tue May 31 15:19:16 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780862.hhm -d /home/congqian_1/database/cdd/Cdd.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 PRK06638 NADH dehydrogenase su 100.0       0       0  364.2  23.0  196    1-197     1-196 (196)
  2 MTH00057 ND6 NADH dehydrogenas 100.0       0       0  341.1  19.9  180    6-185     3-183 (184)
  3 MTH00021 ND6 NADH dehydrogenas 100.0       0       0  321.3  17.8  174   10-183     1-186 (187)
  4 CHL00016 ndhG NADH dehydrogena 100.0       0       0  279.3  19.0  165    3-167     7-177 (177)
  5 COG0839 NuoJ NADH:ubiquinone o 100.0 4.2E-45       0  264.1  18.4  166    1-168     1-166 (166)
  6 MTH00213 ND6 NADH dehydrogenas 100.0 1.8E-37 4.7E-42  222.2  16.1  168    3-170     7-311 (312)
  7 PRK06433 NADH dehydrogenase su 100.0 3.2E-30 8.2E-35  182.8  11.2   86    1-86      2-87  (89)
  8 pfam00499 Oxidored_q3 NADH-ubi  99.9 1.5E-21 3.9E-26  135.6  14.4  139   17-164     2-140 (140)
  9 PRK12504 putative monovalent c  98.7 2.6E-06 6.8E-11   52.7  16.3  163    3-168     2-176 (178)
 10 PRK12507 putative monovalent c  98.4 1.7E-05 4.3E-10   48.4  13.5   69    9-77     15-83  (334)
 11 MTH00045 ND6 NADH dehydrogenas  98.3 1.8E-08 4.5E-13   64.6  -3.4  158    8-173     3-160 (161)
 12 PRK08378 hypothetical protein;  98.3 1.3E-05 3.4E-10   48.9  10.8   80    1-80      1-80  (94)
 13 PRK12645 monovalent cation/H+   98.1 0.00039 9.9E-09   41.0  15.8   71    7-80    630-700 (800)
 14 PRK12647 putative monovalent c  98.1 0.00011 2.8E-09   44.0  12.5   71    7-80    588-658 (761)
 15 PRK12646 putative monovalent c  98.0 0.00029 7.3E-09   41.7  13.2   73    6-81    628-700 (800)
 16 PRK06439 NADH dehydrogenase su  97.8 1.5E-05 3.9E-10   48.6   2.5   45  123-167    27-71  (72)
 17 PRK12644 putative monovalent c  97.8  0.0021 5.4E-08   36.9  16.2   68    7-75    598-665 (968)
 18 PRK12648 putative monovalent c  97.7  0.0021 5.2E-08   37.0  12.7   70    8-80    608-678 (950)
 19 PRK12650 putative monovalent c  97.6  0.0028 7.2E-08   36.3  11.7   68    6-74    605-672 (969)
 20 MTH00152 ND6 NADH dehydrogenas  97.5  0.0051 1.3E-07   34.9  14.6  151   12-168     7-159 (168)
 21 PRK12649 putative monovalent c  97.4  0.0062 1.6E-07   34.4  13.9   71    7-80    632-702 (800)
 22 TIGR00940 2a6301s01 monovalent  97.3    0.01 2.6E-07   33.2  15.6  168    5-176   629-809 (809)
 23 MTH00015 ND6 NADH dehydrogenas  97.0    0.02   5E-07   31.7  13.3  144   10-169     5-149 (155)
 24 COG1563 Predicted subunit of t  96.9   0.025 6.4E-07   31.1  10.6   73    3-75      7-79  (87)
 25 MTH00214 ND6 NADH dehydrogenas  96.6 0.00029 7.4E-09   41.7  -1.2  158   10-173     3-160 (162)
 26 PRK06280 hypothetical protein;  96.5   0.027   7E-07   30.9   8.9   73    4-76      2-74  (80)
 27 MTH00138 ND6 NADH dehydrogenas  96.5 0.00067 1.7E-08   39.7   0.4  165    7-174     4-172 (173)
 28 MTH00166 ND6 NADH dehydrogenas  96.4   0.056 1.4E-06   29.2  17.0  155   13-174     7-162 (164)
 29 MTH00065 ND6 NADH dehydrogenas  96.2 0.00077   2E-08   39.4  -0.6  165    7-173     4-170 (172)
 30 MTH00109 ND6 NADH dehydrogenas  95.9 0.00076 1.9E-08   39.4  -1.8   70    9-78      7-76  (175)
 31 MTH00115 ND6 NADH dehydrogenas  95.6  0.0014 3.5E-08   38.0  -1.4  166    7-173     4-172 (174)
 32 PRK05640 putative monovalent c  94.6    0.26 6.7E-06   25.6  14.4   65    9-74      4-68  (151)
 33 MTH00064 ND6 NADH dehydrogenas  91.3    0.04   1E-06   30.0  -0.5   61   17-77     13-73  (151)
 34 MTH00212 ND6 NADH dehydrogenas  91.1    0.92 2.3E-05   22.6  13.8  140   16-168     6-147 (154)
 35 PRK07377 hypothetical protein;  88.9     1.4 3.6E-05   21.6   8.3   67    8-76      5-71  (185)
 36 pfam03137 OATP Organic Anion T  85.6     2.2 5.7E-05   20.5   7.3   32  125-161   214-245 (582)
 37 COG2851 CitM H+/citrate sympor  82.0     3.2 8.2E-05   19.7   6.1   41  136-179   172-212 (433)
 38 TIGR00805 oat sodium-independe  81.7     1.9   5E-05   20.8   3.6  120   56-184   178-305 (723)
 39 pfam05454 DAG1 Dystroglycan (D  80.6     2.1 5.3E-05   20.7   3.4   55  136-192   143-197 (290)
 40 KOG3626 consensus               78.4     4.3 0.00011   19.0   5.1   45  121-170   305-349 (735)
 41 pfam06664 MIG-14_Wnt-bd Wnt-bi  68.1     7.8  0.0002   17.5  11.5   65   46-110   107-172 (291)
 42 PRK10532 threonine and homoser  66.2     8.5 0.00022   17.3   4.0   44  132-175   250-293 (293)
 43 PRK10683 putrescine transporte  52.8      15 0.00038   16.0   8.4   44  127-170   263-312 (317)
 44 PRK07375 putative monovalent c  48.9      17 0.00044   15.7   6.4   47    4-50      2-48  (112)
 45 COG5416 Uncharacterized integr  48.1      17 0.00043   15.8   2.6   26  137-164    52-77  (98)
 46 TIGR03663 conserved hypothetic  46.8      19 0.00048   15.5  18.8   59    3-68    121-179 (439)
 47 PRK09497 potB spermidine/putre  46.6      19 0.00048   15.5   5.2   76   95-175   202-283 (285)
 48 COG2991 Uncharacterized protei  38.6      26 0.00065   14.7   2.7   32    1-32      1-32  (77)
 49 COG1006 MnhC Multisubunit Na+/  37.2      27 0.00069   14.6   6.4   43    8-50      5-47  (115)
 50 COG5116 RPN2 26S proteasome re  35.6      19 0.00049   15.4   1.4   28  131-158   712-739 (926)
 51 pfam00124 Photo_RC Photosynthe  34.1      30 0.00077   14.3   5.0   44  142-185   147-198 (257)
 52 COG4975 GlcU Putative glucose   27.7      39   0.001   13.7   2.1  161   14-181    38-214 (288)
 53 KOG0510 consensus               27.4      22 0.00056   15.1   0.5   52   27-78    590-657 (929)
 54 PRK11462 putative transporter;  27.1      40   0.001   13.7  16.5   20   60-79    327-346 (460)
 55 pfam06365 CD34_antigen CD34/Po  26.5      41  0.0011   13.6   3.2   33  142-174   102-134 (202)
 56 KOG2062 consensus               26.2      42  0.0011   13.6   3.4   30  131-160   715-744 (929)
 57 KOG3817 consensus               25.7      43  0.0011   13.5   9.6   38  117-155   247-286 (452)
 58 pfam04995 CcmD Heme exporter p  24.4      46  0.0012   13.4   1.7   27  141-167     5-31  (46)
 59 TIGR01627 A_thal_3515 uncharac  23.0      33 0.00084   14.1   0.7   31  156-186   169-200 (238)
 60 COG5336 Uncharacterized protei  22.6      48  0.0012   13.2   1.5   34  151-184    79-112 (116)
 61 pfam05968 Bacillus_PapR Bacill  21.0      54  0.0014   13.0   1.9   36  148-183     5-43  (48)
 62 PRK12489 anaerobic C4-dicarbox  20.9      54  0.0014   13.0   3.4   42  145-187   167-212 (440)
 63 PRK13718 conjugal transfer pro  20.5      55  0.0014   12.9   3.3   18   63-80     54-71  (84)
 64 TIGR01000 bacteriocin_acc bact  20.3      56  0.0014   12.9   2.3   25  142-166    20-44  (476)

No 1  
>PRK06638 NADH dehydrogenase subunit J; Provisional
Probab=100.00  E-value=0  Score=364.24  Aligned_cols=196  Identities=36%  Similarity=0.655  Sum_probs=169.8

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             95799999999999999999999724289999999999999999999808707999999999999999999999981731
Q gi|254780862|r    1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID   80 (199)
Q Consensus         1 M~~~~i~F~~~a~l~i~sal~vi~~kn~v~s~l~Li~~f~~vAgl~~lL~aeFla~~qIlVYvGAI~VLflFvIMll~~~   80 (199)
                      |+.|.++||+++.++++|+++|+++||||||++||+.+|+++||+|++|||||+|++||+||+|||+|||+|+|||+|.+
T Consensus         1 m~~e~i~F~i~a~l~i~sal~vv~~~npV~sal~Lv~~f~~vAgly~lL~AeFla~iqIiVYaGAI~VLfLFvIMll~~~   80 (196)
T PRK06638          1 MTGEAIAFYIFALLAVLAALGVVTSRNPVHSALALILTFLSIAGLFFLLGAEFLGVLQIIVYVGAVMVLFLFVVMMLDVD   80 (196)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             92899999999999999989998657579999999999999999999965469999999999999999999999981662


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             11212332210012468999999999999977662156665543446113899999998752699999999999999999
Q gi|254780862|r   81 IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGA  160 (199)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~L~t~y~~~fel~sviLLvamiGA  160 (199)
                      .++.+.+.+++.+.....+............ ............+.+.+|++++|..|||+|.+|||++|++||+|||||
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~iG~~Lft~Y~lpFE~~silLLvAmIGA  159 (196)
T PRK06638         81 FDELRLQERRWLPPGVWIGFIILLELLLGII-VWAISGTADAGIPGTEGNTKAIGIVLFTDYLLPFELASVLLLVAMVGA  159 (196)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             4554200035899999999999999999999-862266665545667776999999999989999999999999999999


Q ss_pred             HHHHHHCCCCCCCCCHHHHHHCCHHHCEEEEECCCCC
Q ss_conf             9999750588754689999500843156875279999
Q gi|254780862|r  161 IVLMLRHRRDIKRQDISKQLESNPDNSIVMVKVKSGK  197 (199)
Q Consensus       161 i~La~~~~~~~krq~~~~q~~~~~~~~i~~v~~~~~~  197 (199)
                      ++||+|||++.||||+++|++||++|+++++|.+|+|
T Consensus       160 IvLa~r~~~~~k~q~~~~q~~~~~~~~~~~~~~~~~~  196 (196)
T PRK06638        160 IVLARRERKGVKRQNRSEQLARRKEEAVLLPKPGVGK  196 (196)
T ss_pred             HHHHHCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCC
T ss_conf             9876114789876789999600613260568999997


No 2  
>MTH00057 ND6 NADH dehydrogenase subunit 6; Provisional
Probab=100.00  E-value=0  Score=341.08  Aligned_cols=180  Identities=41%  Similarity=0.607  Sum_probs=154.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Q ss_conf             99999999999999999972428999999999999999999980870799999999999999999999998173111212
Q gi|254780862|r    6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAE   85 (199)
Q Consensus         6 i~F~~~a~l~i~sal~vi~~kn~v~s~l~Li~~f~~vAgl~~lL~aeFla~~qIlVYvGAI~VLflFvIMll~~~~~~~~   85 (199)
                      .+||+|+.+++.||++|+++||||||++||+.+|+++||+|++|||||+|++||+||+|||+|||+|+|||+|.+.++.+
T Consensus         3 ~lF~i~a~~~i~sal~vv~~kNpVhsal~Li~~f~~~A~l~~lL~AeFLa~vqIiVYvGAI~VLfLFVIMmln~~~~~~~   82 (184)
T MTH00057          3 GLFYLFALGVIISGIMVISALNPVHSVLWLIVAFLSASALFILLEVEFIAFIFLIVYVGAIAILFLFVIMMLNLTDLEGG   82 (184)
T ss_pred             CHHHHHHHHHHHHHHHHEECCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHC
T ss_conf             68999999999997840002764999999999999999999994759999999999998999999999997361476640


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             332210012468999999999-9999776621566655434461138999999987526999999999999999999999
Q gi|254780862|r   86 PRKKRGFLGSFFIGILAAELI-VCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLM  164 (199)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~L~t~y~~~fel~sviLLvamiGAi~La  164 (199)
                      .+.++..+...+.+.+..... ....................+.+|++.+|+.|||+|.+|||++|++||+|||||++||
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~iG~~Lft~Y~~pFel~silLLvAmIGAIvLt  162 (184)
T MTH00057         83 GDMSNYLPAGFIIGVVFLFEILIFQSTFPSYGIRYVRWNWIEKEPNIEVLGRVLYTDYYYLFILASFILLVAMIGAIVLT  162 (184)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             12135778999999999999999999741255544553225788759999999999889999999999999999999751


Q ss_pred             HHCCCCCCCCCHHHHHHCCHH
Q ss_conf             750588754689999500843
Q gi|254780862|r  165 LRHRRDIKRQDISKQLESNPD  185 (199)
Q Consensus       165 ~~~~~~~krq~~~~q~~~~~~  185 (199)
                      +|+|+++||||+++|++||.+
T Consensus       163 ~~~~~~~k~Q~~~~Q~~r~~~  183 (184)
T MTH00057        163 HDLRIEIKRQDIFIQTSRQLW  183 (184)
T ss_pred             CCCCCCCCCCCHHHHHHHHHH
T ss_conf             125788766689999878850


No 3  
>MTH00021 ND6 NADH dehydrogenase subunit 6; Validated
Probab=100.00  E-value=0  Score=321.34  Aligned_cols=174  Identities=33%  Similarity=0.578  Sum_probs=137.0

Q ss_pred             HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf             99999999999999724289999999999999999999808707999999999999999999999981731112123322
Q gi|254780862|r   10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKK   89 (199)
Q Consensus        10 ~~a~l~i~sal~vi~~kn~v~s~l~Li~~f~~vAgl~~lL~aeFla~~qIlVYvGAI~VLflFvIMll~~~~~~~~~~~~   89 (199)
                      +||.++++||++|+++||||||++||+.+|+++||+|+++||||+|++|++||+|||+|||+|+|||+|.+.++...+.+
T Consensus         1 ifa~~~i~sal~VV~~~NpV~saL~Li~~f~~vA~l~llL~aeFLa~vqIiVYvGAI~VLFLFVIMmLni~~~~~~~~~~   80 (187)
T MTH00021          1 MFSLGIVGSGIMVISALNPVHSIFWLVVVFVNSAVFFLLLGIDFIALMFLIIYVGAIAILFLFVIMLLNLTDFPPAFRLE   80 (187)
T ss_pred             CHHHHHHHHHHEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
T ss_conf             90599998867145427709999999999999999999955689999999999989999999999992640112055650


Q ss_pred             HHHHHHHHHHHHHHHHHHHH--HHH------HHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             10012468999999999999--977------6621566655434461138999999987526999999999999999999
Q gi|254780862|r   90 RGFLGSFFIGILAAELIVCA--SNF------MVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAI  161 (199)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~--~~~------~~~~~~~~~~~~~~~~~~~~~iG~~L~t~y~~~fel~sviLLvamiGAi  161 (199)
                      +......+.+......+...  ..+      .....+...+....+.+|+|.+|..|||+|.+|||++|++||+||||||
T Consensus        81 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ni~~iG~~Lyt~Y~~~FeiasiiLLvAmIGAI  160 (187)
T MTH00021         81 ADMTNYIPIGLSIGTFFFSEIASSWLIIGGPYVERWDLAFPWFLMSYHNIEALGRILYIACYYLFILASFILLVAMIGAI  160 (187)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             26520313999999999999999898715521245444674313567719999999998889999999999999999999


Q ss_pred             HHHHHCCCCC----CCCCHHHHHHCC
Q ss_conf             9997505887----546899995008
Q gi|254780862|r  162 VLMLRHRRDI----KRQDISKQLESN  183 (199)
Q Consensus       162 ~La~~~~~~~----krq~~~~q~~~~  183 (199)
                      +||+|+|+++    ||||+++|++|.
T Consensus       161 vLt~~~~~~~~~~~k~Q~i~~Q~~r~  186 (187)
T MTH00021        161 VLTQEIGSEVGPLAKKQDLFFQISRA  186 (187)
T ss_pred             HHHCCCCCCCCCCCCCCCHHHHHHCC
T ss_conf             99500045778666665499887126


No 4  
>CHL00016 ndhG NADH dehydrogenase subunit 6
Probab=100.00  E-value=0  Score=279.34  Aligned_cols=165  Identities=27%  Similarity=0.367  Sum_probs=123.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
Q ss_conf             79999999999999999999972428999999999999999999980870799999999999999999999998173111
Q gi|254780862|r    3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIE   82 (199)
Q Consensus         3 ~~~i~F~~~a~l~i~sal~vi~~kn~v~s~l~Li~~f~~vAgl~~lL~aeFla~~qIlVYvGAI~VLflFvIMll~~~~~   82 (199)
                      .++++||+++.+++.||++++++|||+||++||+.+|+++||+|++|||||+|++||+||+|||+|||+|+|||+|.+.+
T Consensus         7 ~~~ilF~~~a~~~i~~al~vv~~~n~V~sal~Lv~~f~~vAgly~lL~A~Fla~~QIlVYaGAI~VLflFvIMll~~~~~   86 (177)
T CHL00016          7 IHDFLLVFLGSGLILGGLGVVLLTNPIYSAFSLGLVLVCISLLYILLNSDFVAAAQLLIYVGAINVLIIFAVMFMNGSEY   86 (177)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
T ss_conf             99999999999999998840103644999999999999999999995358999999999999999999999998261644


Q ss_pred             HHHHHHHHH-H-HHHHHHHHHHHHHHHHHHHHHHH--CCCC--CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             212332210-0-12468999999999999977662--1566--6554344611389999999875269999999999999
Q gi|254780862|r   83 VAEPRKKRG-F-LGSFFIGILAAELIVCASNFMVF--SAEG--ELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLS  156 (199)
Q Consensus        83 ~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~~~~~~iG~~L~t~y~~~fel~sviLLva  156 (199)
                      +++.+..+. . .......................  ....  .........+|+|.+|+.|||+|.+|||++|++||+|
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~L~t~y~lpFEl~s~lLLvA  166 (177)
T CHL00016         87 SKDFNLWTVGDGITSLVCTSLFFSLITTILDTSWYGIIWTTRSNQIIEQDLISNVQQIGIHLSTDFFLPFELISIILLVA  166 (177)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             30223677888999999999999999999964020113456664333333467799999999861799999999999999


Q ss_pred             HHHHHHHHHHC
Q ss_conf             99999999750
Q gi|254780862|r  157 MIGAIVLMLRH  167 (199)
Q Consensus       157 miGAi~La~~~  167 (199)
                      ||||++|||||
T Consensus       167 mIGAIvLarre  177 (177)
T CHL00016        167 LIGAITIARQE  177 (177)
T ss_pred             HHHHHHHHCCC
T ss_conf             99896420369


No 5  
>COG0839 NuoJ NADH:ubiquinone oxidoreductase subunit 6 (chain J) [Energy production and conversion]
Probab=100.00  E-value=4.2e-45  Score=264.08  Aligned_cols=166  Identities=36%  Similarity=0.647  Sum_probs=139.0

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             95799999999999999999999724289999999999999999999808707999999999999999999999981731
Q gi|254780862|r    1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID   80 (199)
Q Consensus         1 M~~~~i~F~~~a~l~i~sal~vi~~kn~v~s~l~Li~~f~~vAgl~~lL~aeFla~~qIlVYvGAI~VLflFvIMll~~~   80 (199)
                      |+++.+.||+|+.++++++++++++|||+||+++|..+++++|++|+++||||+|++|++||+|||+|+|+|++||+|.+
T Consensus         1 ~~~~~~~F~~fa~~~i~~a~~VV~~kn~vys~l~L~~~~l~iA~~~~ll~aefl~v~~v~VYvGAV~vl~~fvvm~~~~~   80 (166)
T COG0839           1 MMIETLAFYLFAVLAIAFALGVVLAKNPVYSALYLALTLLSIAALFFLLGAEFLGVVQVLVYVGAVMVLFLFVVMMLNVD   80 (166)
T ss_pred             CCHHHHHHHHHHHHHHHHHHEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             91899999999999999860045533769999999999999999999826399999999999989999999999983555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             11212332210012468999999999999977662156665543446113899999998752699999999999999999
Q gi|254780862|r   81 IEVAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGA  160 (199)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~L~t~y~~~fel~sviLLvamiGA  160 (199)
                      .++.+++.++..+.....+....................+. + +.+.+|+|.+|+.+||+|++|||++|++||+||+||
T Consensus        81 ~~~~~~~~~~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~lg~~Lft~Yl~pfe~asilLL~amVgA  158 (166)
T COG0839          81 GAEVREEGLRGKPLAALVGLVLLALLIISVAVVSGAFVPPS-N-PAAIGNIKALGSVLFTDYLLPFELASVLLLVAMVGA  158 (166)
T ss_pred             CHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC-C-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             06641337725626999999999999999999845667855-5-555435999999994606899999999999999989


Q ss_pred             HHHHHHCC
Q ss_conf             99997505
Q gi|254780862|r  161 IVLMLRHR  168 (199)
Q Consensus       161 i~La~~~~  168 (199)
                      |+|+|||+
T Consensus       159 I~Larr~~  166 (166)
T COG0839         159 IVLARRER  166 (166)
T ss_pred             HHHHCCCC
T ss_conf             43321379


No 6  
>MTH00213 ND6 NADH dehydrogenase subunit 6; Provisional
Probab=100.00  E-value=1.8e-37  Score=222.23  Aligned_cols=168  Identities=33%  Similarity=0.547  Sum_probs=119.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH---------------HCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf             7999999999999999999997---------------2428999999999999999999980870799999999999999
Q gi|254780862|r    3 MQSLFFYLFSFMAIISSFLVVT---------------VRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVI   67 (199)
Q Consensus         3 ~~~i~F~~~a~l~i~sal~vi~---------------~kn~v~s~l~Li~~f~~vAgl~~lL~aeFla~~qIlVYvGAI~   67 (199)
                      -||++|.+++.+++..+++.++               ++|-++|++||+++|.+.||+|++||+||+|++.++||||||+
T Consensus         7 red~lf~~lss~tv~aaimti~~~~~~~~~~avtp~~s~n~~~SVfwLILvF~nsSgLFILLG~dFlALIFLIVYVGAIA   86 (312)
T MTH00213          7 REDVLFAILSSITVIAAIMTISSGAIPKKSSAVTPIYSHNFLASVFWLILAFIGSSGLFIVLGMEFLGLIFLIVYVGAIC   86 (312)
T ss_pred             HHHEEHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             13000123657889998864115777986653062334441999999999997246999998219999999999997999


Q ss_pred             HHHHHHHHHHCCC---------HHHHHHHH---------------------------------------------HHHHH
Q ss_conf             9999999981731---------11212332---------------------------------------------21001
Q gi|254780862|r   68 VFFLFIIMMLDID---------IEVAEPRK---------------------------------------------KRGFL   93 (199)
Q Consensus        68 VLflFvIMll~~~---------~~~~~~~~---------------------------------------------~~~~~   93 (199)
                      |||||||||+|..         .++.....                                             ....+
T Consensus        87 ILFLFVIMML~~~~f~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~f~~~~~~~e~~~~~~~~~~~~~~~~p  166 (312)
T MTH00213         87 IIFLFVIMMIPGGSFLGAPGAEGAHAIDLWGSEAPLISKAGIFIKFAKAFWKAKFGGKALSAEKDKAGAGAHSAAPSNTA  166 (312)
T ss_pred             HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             99999999436645555322222111000012355443211002233210331124332221000122100014665551


Q ss_pred             HHHHHHHHHHHHH-HHH-HHHHH-------------------------------------HC-----C----------C-
Q ss_conf             2468999999999-999-97766-------------------------------------21-----5----------6-
Q gi|254780862|r   94 GSFFIGILAAELI-VCA-SNFMV-------------------------------------FS-----A----------E-  118 (199)
Q Consensus        94 ~~~~~~~~~~~~~-~~~-~~~~~-------------------------------------~~-----~----------~-  118 (199)
                      ....++.++..-+ ... ..+..                                     +.     .          + 
T Consensus       167 IG~LIG~Il~~El~~~v~~sfl~~~~~~~g~~~l~~p~~~~gv~si~~~~~~~~~~~~~n~~~~~~~~~a~~~~l~~~~~  246 (312)
T MTH00213        167 IGVLIGAILGAELSAAVPESFLNGPNGKGGAERLAPPLIPLGVESILEPDIKNIAFEFQNLINMRGASAAPEESLGRLWR  246 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCC
T ss_conf             68899999999999860155404532246631136643332113321102333125556677765311552132222214


Q ss_pred             -------------CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             -------------6655434461138999999987526999999999999999999999750588
Q gi|254780862|r  119 -------------GELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD  170 (199)
Q Consensus       119 -------------~~~~~~~~~~~~~~~iG~~L~t~y~~~fel~sviLLvamiGAi~La~~~~~~  170 (199)
                                   ..+.......+|+|+||+.|||+|.+.|+++|++||+||||||+|+.|+..|
T Consensus       247 p~~~~~~~~~~~~~f~~~~~~~~tNIEAIG~VLYT~YyY~FILASfILLVAMIGAIVL~l~~~~~  311 (312)
T MTH00213        247 PFGEPDCAPLANDSFFALNAPGCSNLEAIGAVLYINYYYAFILVSFILLVAMIGAIVLGLQSSDR  311 (312)
T ss_pred             CCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCC
T ss_conf             33344445444542010157888779998788999999999999999999998476221004678


No 7  
>PRK06433 NADH dehydrogenase subunit J; Provisional
Probab=99.97  E-value=3.2e-30  Score=182.84  Aligned_cols=86  Identities=29%  Similarity=0.500  Sum_probs=82.3

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             95799999999999999999999724289999999999999999999808707999999999999999999999981731
Q gi|254780862|r    1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID   80 (199)
Q Consensus         1 M~~~~i~F~~~a~l~i~sal~vi~~kn~v~s~l~Li~~f~~vAgl~~lL~aeFla~~qIlVYvGAI~VLflFvIMll~~~   80 (199)
                      |+.|++.||+++.++++||++++++|||+||++||+.+|+++|++|+++||||+|+.||+||+|||+|||+|+|||+|.+
T Consensus         2 m~~e~i~F~~~a~~~v~~al~vv~~rn~Vhsal~L~~~~~~vA~ly~ll~AeFla~vQilVY~GAi~vL~lF~vMLt~~~   81 (89)
T PRK06433          2 MAYETLVFALFAILTVGFSVGVVLAKDVWHSALYLGIFLFSVAVLYIMLGASFLGVVQVLVYIGAVLILITFAVMLTKRQ   81 (89)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             71699999999999999998998722699999999999999999999926889999999999809999999999982877


Q ss_pred             HHHHHH
Q ss_conf             112123
Q gi|254780862|r   81 IEVAEP   86 (199)
Q Consensus        81 ~~~~~~   86 (199)
                      .++++.
T Consensus        82 ~~~~~~   87 (89)
T PRK06433         82 IGGEEI   87 (89)
T ss_pred             CCCCCC
T ss_conf             676778


No 8  
>pfam00499 Oxidored_q3 NADH-ubiquinone/plastoquinone oxidoreductase chain 6.
Probab=99.88  E-value=1.5e-21  Score=135.61  Aligned_cols=139  Identities=26%  Similarity=0.406  Sum_probs=96.3

Q ss_pred             HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf             99999997242899999999999999999998087079999999999999999999999817311121233221001246
Q gi|254780862|r   17 ISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSF   96 (199)
Q Consensus        17 ~sal~vi~~kn~v~s~l~Li~~f~~vAgl~~lL~aeFla~~qIlVYvGAI~VLflFvIMll~~~~~~~~~~~~~~~~~~~   96 (199)
                      .+++.++++|||+|++++++..++++|+++..+|++|+|.+|++||+||++|+|+|++|+.+.+..+..++  .  ... 
T Consensus         2 ~~~l~~~~~~~Pi~~~l~li~~~l~~a~~~~~~~~~~~~~i~~lVYvGg~mVlFly~~~l~~~~~~~~~~~--~--~~~-   76 (140)
T pfam00499         2 LSSLLVLFSKNPIYLGLSLILLSLSLSLLLFLLGSSWLGLILFLVYVGGILVLFLYVVSLSPNEKFKFKKG--S--KFL-   76 (140)
T ss_pred             EEEEHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH--H--HHH-
T ss_conf             42203797088899999999999999999999967999999999999899999999999567515666753--8--999-


Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             89999999999999776621566655434461138999999987526999999999999999999999
Q gi|254780862|r   97 FIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLM  164 (199)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~L~t~y~~~fel~sviLLvamiGAi~La  164 (199)
                       .........  .........+....... ...+....+..+|++|..+||+.+++|+++++|++.++
T Consensus        77 -~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~i~Lli~li~~i~l~  140 (140)
T pfam00499        77 -LLLLLLLFI--LLLFFLLFSNLSFSLNS-ISSSNVNLLSLLYSSNSLIFILLSLLLLIALIGVIKLA  140 (140)
T ss_pred             -HHHHHHHHH--HHHHHHHHHHCCCCCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             -999999999--99999985201233345-66529999999974479999999999999999996729


No 9  
>PRK12504 putative monovalent cation/H+ antiporter subunit B; Reviewed
Probab=98.73  E-value=2.6e-06  Score=52.74  Aligned_cols=163  Identities=15%  Similarity=0.149  Sum_probs=98.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
Q ss_conf             79999999999999999999972428999999999999999999980870799999999999999999999998173111
Q gi|254780862|r    3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIE   82 (199)
Q Consensus         3 ~~~i~F~~~a~l~i~sal~vi~~kn~v~s~l~Li~~f~~vAgl~~lL~aeFla~~qIlVYvGAI~VLflFvIMll~~~~~   82 (199)
                      +..++=+.+..+.+.+++.++++||-..+++.+-..-+++|..|..++||=+|..|..|=+|=..++++-+...+..+.+
T Consensus         2 ~~~~~e~~l~~llv~~ai~~v~~r~rl~avi~~gv~G~~val~f~~l~APDvAlTQ~~Vet~ittvL~l~~l~~l~~~~~   81 (178)
T PRK12504          2 VLFIINVVLLLFLVATAVAVVLLRDLLASIVAMATFSLLIALIYLILDAPDVAITEAAVGAGISTVLFLATLSLTVRGDV   81 (178)
T ss_pred             CEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf             02189999999999999999999999999999999999999999994695699999999997999999999984577642


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCCCCCCCC--CHHHH------HHHHHH---HHHHHHHHHHH
Q ss_conf             21233221001246899999999999997766215-66655434461--13899------999998---75269999999
Q gi|254780862|r   83 VAEPRKKRGFLGSFFIGILAAELIVCASNFMVFSA-EGELSRLVFKG--NNVEN------IGKVLY---TQYAYPLEISG  150 (199)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~------iG~~L~---t~y~~~fel~s  150 (199)
                      +...+..+ .+.....................+.. +.+.++...+.  .|...      +=+...   --|=--.|+  
T Consensus        82 ~~~~~~~~-~~~~~~~~~~~~~l~~~~~~l~~~~~~~~p~~~~is~~y~e~s~~~~gg~NvVnvILvdFRg~DTlGEi--  158 (178)
T PRK12504         82 EKVFERVN-IFAMLIALGLFGALIYAVLDLPAFGDPNAPAHGHVAPYYIENTYEEIGIPNVVTAVLASYRGYDTLGET--  158 (178)
T ss_pred             CCCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEHHHCCCHHHHH--
T ss_conf             34555410-899999999999999999998860376887655114999984576429988145562122220036699--


Q ss_pred             HHHHHHHHHHHHHHHHCC
Q ss_conf             999999999999997505
Q gi|254780862|r  151 FILLLSMIGAIVLMLRHR  168 (199)
Q Consensus       151 viLLvamiGAi~La~~~~  168 (199)
                      ..|.+|-+|...|-|||+
T Consensus       159 ~VL~iA~lgV~~Llrr~~  176 (178)
T PRK12504        159 IVVFTAGLAVLLLLRRED  176 (178)
T ss_pred             HHHHHHHHHHHHHHHHHH
T ss_conf             999999999999983460


No 10 
>PRK12507 putative monovalent cation/H+ antiporter subunit B; Reviewed
Probab=98.42  E-value=1.7e-05  Score=48.37  Aligned_cols=69  Identities=19%  Similarity=0.223  Sum_probs=60.2

Q ss_pred             HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999999999724289999999999999999999808707999999999999999999999981
Q gi|254780862|r    9 YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMML   77 (199)
Q Consensus         9 ~~~a~l~i~sal~vi~~kn~v~s~l~Li~~f~~vAgl~~lL~aeFla~~qIlVYvGAI~VLflFvIMll   77 (199)
                      -+.+.+.+..++.++++||-..++..+...-+++|-.|..++||=+|..|++|=++=..++++.+.--+
T Consensus        15 ~~ialllv~~ai~~v~~r~rl~Avvl~gv~Gl~val~Fv~l~APDLALTQ~~Ve~~lt~vllll~l~~l   83 (334)
T PRK12507         15 NLIAFLLVLISIKIIFAKDLLNAVILTSIFSLLIAVSFLIMDAPDVAMTEAALGACLSTCVYLNLLRKL   83 (334)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             999999999999999999999999999999999999999859846999999999999999999999867


No 11 
>MTH00045 ND6 NADH dehydrogenase subunit 6; Validated
Probab=98.33  E-value=1.8e-08  Score=64.56  Aligned_cols=158  Identities=23%  Similarity=0.354  Sum_probs=104.4

Q ss_pred             HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf             99999999999999997242899999999999999999998087079999999999999999999999817311121233
Q gi|254780862|r    8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPR   87 (199)
Q Consensus         8 F~~~a~l~i~sal~vi~~kn~v~s~l~Li~~f~~vAgl~~lL~aeFla~~qIlVYvGAI~VLflFvIMll~~~~~~~~~~   87 (199)
                      ++++....+.+.+.+...++|.|+++.|+.+-.+-.++....|.+|++.+..+||-|+..|.|.+..-|..-+.++. +.
T Consensus         3 ~fl~~~~lv~G~v~V~snpSPyfgalgLV~~a~~gC~iL~~~G~sFlsLvLfLIYLGGMLVVFaYs~ALaaE~yP~~-~~   81 (161)
T MTH00045          3 FYLVLIVMLFGSTLVFYSLSPYYGALGLVIVSISGCLLLSLLGLSFVALVLLLVYMGGMLVVFVYSSAISAERYPSV-SN   81 (161)
T ss_pred             HHHHHHHHHHHHHEEECCCCHHHHHHHHHHHHHCHHHHHHHCCCCHHHHHHHHHHHCCEEEHHHHHHHHHCCCCCCC-CC
T ss_conf             28999999986516886798288879999988332473664697389999999993867862123388874789852-46


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             22100124689999999999999776621566655434461138999999987526999999999999999999999750
Q gi|254780862|r   88 KKRGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH  167 (199)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~L~t~y~~~fel~sviLLvamiGAi~La~~~  167 (199)
                      .+.. .......     ..........+..............|.. =...+|+....-+.+.+-.||.++...+-++|.+
T Consensus        82 ~~~v-~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~d~~-Gv~~lY~~gg~~l~l~gw~LLltLfVVLEltRG~  154 (161)
T MTH00045         82 LNEV-LVLSFLF-----ILWVFISFDNFNNLSNSNWSLSSNSSLV-GSSYLFNSMGLFLLLGGFILLVALVVALVISRGS  154 (161)
T ss_pred             CCEE-EEEEEEE-----EEEEEEEEEEEEEEECCCEEEEECCCCE-EHHHHHHCCHHHHHHHHHHHHHHHHEEEEEECCC
T ss_conf             6568-8999999-----9999998012487633756899778754-7155674989999899999999865558991587


Q ss_pred             CCCCCC
Q ss_conf             588754
Q gi|254780862|r  168 RRDIKR  173 (199)
Q Consensus       168 ~~~~kr  173 (199)
                      .++.-|
T Consensus       155 srGaLR  160 (161)
T MTH00045        155 EYSSLR  160 (161)
T ss_pred             CCCCCC
T ss_conf             503106


No 12 
>PRK08378 hypothetical protein; Provisional
Probab=98.30  E-value=1.3e-05  Score=48.95  Aligned_cols=80  Identities=21%  Similarity=0.218  Sum_probs=75.2

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             95799999999999999999999724289999999999999999999808707999999999999999999999981731
Q gi|254780862|r    1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID   80 (199)
Q Consensus         1 M~~~~i~F~~~a~l~i~sal~vi~~kn~v~s~l~Li~~f~~vAgl~~lL~aeFla~~qIlVYvGAI~VLflFvIMll~~~   80 (199)
                      |+.+.++=+++-...+.+++.++..||...++...-.-=+..|.+|..|+|+=+|..+-.|-+|-..++|++++..+...
T Consensus         1 m~~~~iI~~ill~~lvv~Ai~~v~~rdLl~avi~~~~~Sll~a~~f~~L~ApDVA~TEAaVGAGisTvl~l~al~~T~R~   80 (94)
T PRK08378          1 MNCDMCIQFIIVALMIISAILAVEWRDLLAAAVGMAAVSLFASLLFFMLQAPDVAMTEAAIGAALSTAVVIFAIKRTERY   80 (94)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             93999999999999999999999999999999999999999999999957848999999998039999999999971366


No 13 
>PRK12645 monovalent cation/H+ antiporter subunit A; Reviewed
Probab=98.15  E-value=0.00039  Score=40.95  Aligned_cols=71  Identities=17%  Similarity=0.251  Sum_probs=57.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             99999999999999999724289999999999999999999808707999999999999999999999981731
Q gi|254780862|r    7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID   80 (199)
Q Consensus         7 ~F~~~a~l~i~sal~vi~~kn~v~s~l~Li~~f~~vAgl~~lL~aeFla~~qIlVYvGAI~VLflFvIMll~~~   80 (199)
                      .=+....+.+.+++.++++|+-..+++.+-.+-+++|.+|...|||=+|..|++|=.=   ...+|+.-+...+
T Consensus       630 ~~~~~~~l~~~~a~~~~~~~~rl~av~~lgv~G~~val~f~~~gAPDlAlTQ~lVEtl---t~v~~~lvl~~lP  700 (800)
T PRK12645        630 YEVILVIVLLSAAFAILFAKSRLTSIILLGAVGYTVALFFVIFRAPDLALTQLVVETI---SVALFLLCFYHLP  700 (800)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH---HHHHHHHHHHHCC
T ss_conf             9999999999999999999989999999967899999999990881699999999999---9999999997688


No 14 
>PRK12647 putative monovalent cation/H+ antiporter subunit A; Reviewed
Probab=98.14  E-value=0.00011  Score=43.97  Aligned_cols=71  Identities=17%  Similarity=0.351  Sum_probs=57.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             99999999999999999724289999999999999999999808707999999999999999999999981731
Q gi|254780862|r    7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID   80 (199)
Q Consensus         7 ~F~~~a~l~i~sal~vi~~kn~v~s~l~Li~~f~~vAgl~~lL~aeFla~~qIlVYvGAI~VLflFvIMll~~~   80 (199)
                      .-+....+.+.+++.+.++|+-..+++.+-.+-.++|.+|...|||=+|..|++|=.=   .+.+|+.-+...+
T Consensus       588 ~~~~~~~li~~a~~~~~~~~~Rl~av~~lgv~G~~val~f~~~gAPDlAlTQ~lVEtl---t~v~~~lvl~~lP  658 (761)
T PRK12647        588 YEWALALIIVAGALATITTRSRLTAIVSLGVQGFGVALIFILFGAPDLAMTQFLIETL---SVILLVLVLYRLP  658 (761)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH---HHHHHHHHHHHCC
T ss_conf             9999999999999999999999999999978999999999990881699999999999---9999999996588


No 15 
>PRK12646 putative monovalent cation/H+ antiporter subunit A; Reviewed
Probab=98.05  E-value=0.00029  Score=41.69  Aligned_cols=73  Identities=16%  Similarity=0.186  Sum_probs=58.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
Q ss_conf             9999999999999999997242899999999999999999998087079999999999999999999999817311
Q gi|254780862|r    6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI   81 (199)
Q Consensus         6 i~F~~~a~l~i~sal~vi~~kn~v~s~l~Li~~f~~vAgl~~lL~aeFla~~qIlVYvGAI~VLflFvIMll~~~~   81 (199)
                      ..-+....+.+.+++.++++||-..+++.+-.+-+++|.+|.+.|||=+|..|++|=.   ....+|+.-+...+.
T Consensus       628 ~~~~~~~~~~~~~a~~~~~~~~Rl~av~~lgv~G~~val~F~~~gAPDlAlTQ~lVEt---ltvv~~~lvl~~lP~  700 (800)
T PRK12646        628 ALEIILAIVTVTIGISLIFIRQRLTMVILNGVIGFVVTLFFIAMKAPDLALTQLVVET---ITTILFIVSFSRLPN  700 (800)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH---HHHHHHHHHHHHCCC
T ss_conf             7999999999999999999998999999996899999999999088179999999999---999999999976889


No 16 
>PRK06439 NADH dehydrogenase subunit J; Provisional
Probab=97.76  E-value=1.5e-05  Score=48.60  Aligned_cols=45  Identities=22%  Similarity=0.485  Sum_probs=38.4

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             434461138999999987526999999999999999999999750
Q gi|254780862|r  123 RLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRH  167 (199)
Q Consensus       123 ~~~~~~~~~~~iG~~L~t~y~~~fel~sviLLvamiGAi~La~~~  167 (199)
                      +..+...|+..+|..+|+.|..|||+.|+++-.|.+|....++.+
T Consensus        27 tFi~~sQnIs~iG~~lFntYivPFELlSviiV~aviGVMYva~~e   71 (72)
T PRK06439         27 TFIPVSQNISRIGTELFNTYIVPFELLSVIIVGAVIGVMYVAWGE   71 (72)
T ss_pred             CEEECCCCHHHHHHHHHHHEEEHHHHHHHHHHHHHHEEEEEECCC
T ss_conf             257626427688788771003159999999999977368996068


No 17 
>PRK12644 putative monovalent cation/H+ antiporter subunit A; Reviewed
Probab=97.76  E-value=0.0021  Score=36.93  Aligned_cols=68  Identities=19%  Similarity=0.290  Sum_probs=56.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999999999997242899999999999999999998087079999999999999999999999
Q gi|254780862|r    7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM   75 (199)
Q Consensus         7 ~F~~~a~l~i~sal~vi~~kn~v~s~l~Li~~f~~vAgl~~lL~aeFla~~qIlVYvGAI~VLflFvIM   75 (199)
                      .-+..+.+.+.+++.++++||-..+++.+-.+-+++|.+|...+|+=+|..|++|=.=- .|+++.+.-
T Consensus       598 ~~~~~~~li~~~a~~~~~~~~Rl~avi~lgv~G~~val~F~~~gAPDlAlTQllVEtlt-vvl~~LvL~  665 (968)
T PRK12644        598 LQVVVGLLMIAAALAATVMRNRLAAVLLVGVTGYGCALIFALHGAPDLALTQFLVETIT-LVVFVLVLR  665 (968)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-HHHHHHHHH
T ss_conf             99999999999999999999999999999668999999999918816999999999999-999999997


No 18 
>PRK12648 putative monovalent cation/H+ antiporter subunit A; Reviewed
Probab=97.70  E-value=0.0021  Score=37.02  Aligned_cols=70  Identities=16%  Similarity=0.110  Sum_probs=50.9

Q ss_pred             HHHHH-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             99999-99999999999724289999999999999999999808707999999999999999999999981731
Q gi|254780862|r    8 FYLFS-FMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID   80 (199)
Q Consensus         8 F~~~a-~l~i~sal~vi~~kn~v~s~l~Li~~f~~vAgl~~lL~aeFla~~qIlVYvGAI~VLflFvIMll~~~   80 (199)
                      +.... .+.+.+...+.++||-..+++.+-.+-.++|.+|...+||=+|..|++|=.   ..+.+|+.-+...+
T Consensus       608 ~~~~~~~~~~~a~~~~~~~r~Rl~av~~~gv~G~~val~F~~~gAPDlAlTQ~lVEt---lt~vl~~lvl~~lP  678 (950)
T PRK12648        608 FALLWLLLIACALGAAWQAKHRLAALILLGGAGLVVSLTFVWFSAPDLALTQLLVEV---VTTVLLLLGLRWLP  678 (950)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH---HHHHHHHHHHHHCC
T ss_conf             999999999999999999887999999996689999999999188279999999999---99999999998687


No 19 
>PRK12650 putative monovalent cation/H+ antiporter subunit A; Reviewed
Probab=97.56  E-value=0.0028  Score=36.26  Aligned_cols=68  Identities=19%  Similarity=0.163  Sum_probs=55.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999999999999724289999999999999999999808707999999999999999999999
Q gi|254780862|r    6 LFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII   74 (199)
Q Consensus         6 i~F~~~a~l~i~sal~vi~~kn~v~s~l~Li~~f~~vAgl~~lL~aeFla~~qIlVYvGAI~VLflFvI   74 (199)
                      ..-+....+.+.+++.++++||-..+++.+-.+-+++|.+|...+|+=+|..|++|=+=- .|+|+.+.
T Consensus       605 ~~~~~~~~li~~a~~~~~~~r~Rl~avi~lgv~G~~val~F~~~gAPDLAlTQllVEtlt-vVl~~LvL  672 (969)
T PRK12650        605 WIDLIPLAIIALSVIGLLRTRSRLAAVVLVGVVGVGVSFQMLTLGAPDVALTQLLVEGLV-VVIMMLVV  672 (969)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-HHHHHHHH
T ss_conf             999999999999999999999999999999678999999999918826999999999999-99999999


No 20 
>MTH00152 ND6 NADH dehydrogenase subunit 6; Provisional
Probab=97.50  E-value=0.0051  Score=34.88  Aligned_cols=151  Identities=14%  Similarity=0.130  Sum_probs=84.8

Q ss_pred             HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf             99999999999972428999999999999999999980870799999999999999999999998173111212332210
Q gi|254780862|r   12 SFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRG   91 (199)
Q Consensus        12 a~l~i~sal~vi~~kn~v~s~l~Li~~f~~vAgl~~lL~aeFla~~qIlVYvGAI~VLflFvIMll~~~~~~~~~~~~~~   91 (199)
                      ...+.......-..++|.--.+.+...=+.++.+.-.......+-+-=+||+|+..|+|..+.-+..  .+ .  ...+.
T Consensus         7 ~~~~~sl~~i~~~m~~PlSLGl~ll~~t~~~~~~~g~~~s~WysYiLFLIyvGGlLVmFiYv~slap--N~-~--f~~~~   81 (168)
T MTH00152          7 FSLGFSLFSILPLFKQPLSLGFVLMLLSLFVCVEMGLFVSSWYGYLLFLVYVGGLLVMFLYVISLSP--NL-L--FVFNT   81 (168)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--HH-H--HHCCH
T ss_conf             9999999999998459299999999999999999999989999999999999789999999999675--47-7--75053


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHH-HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             012468999999999999977662156665543446113899-9999987-5269999999999999999999997505
Q gi|254780862|r   92 FLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVEN-IGKVLYT-QYAYPLEISGFILLLSMIGAIVLMLRHR  168 (199)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-iG~~L~t-~y~~~fel~sviLLvamiGAi~La~~~~  168 (199)
                      ................................. ....+.+. -+..++. +...-+...+..|+.++|+.+-++..++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~L~~~Lli~Li~VVKIc~~~~  159 (168)
T MTH00152         82 VFLYFFLILFSFLLMNFFVLKSSSSVEMKFLGL-SNYESLSLSGSEMLMSWDNFSCFLGLAVLLLIVLVSVVKICYYNE  159 (168)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHEEECCCCC
T ss_conf             999999999999999999974688888887676-777788753288887146099999999999999894101104778


No 21 
>PRK12649 putative monovalent cation/H+ antiporter subunit A; Reviewed
Probab=97.44  E-value=0.0062  Score=34.42  Aligned_cols=71  Identities=17%  Similarity=0.270  Sum_probs=57.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             99999999999999999724289999999999999999999808707999999999999999999999981731
Q gi|254780862|r    7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDID   80 (199)
Q Consensus         7 ~F~~~a~l~i~sal~vi~~kn~v~s~l~Li~~f~~vAgl~~lL~aeFla~~qIlVYvGAI~VLflFvIMll~~~   80 (199)
                      .-+....+.+.+++.+.++|+-..+++.+-.+-+++|.+|...|||=+|..|++|=.   ....+|+.-+...+
T Consensus       632 ~~~~~~~l~~~~a~~~~~~~~rl~av~~lgv~G~~val~F~~~gAPDlAlTQ~lVEt---ltvvl~~lvl~~lP  702 (800)
T PRK12649        632 YEAILLLLLILAALGAAILPRYLPAIIALSALGFGVALLFIYLKAPDLALTQICVET---LSTIIFILAIIKIP  702 (800)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH---HHHHHHHHHHHHCC
T ss_conf             999999999999999999999999999998999999999999298389999999999---99999999997589


No 22 
>TIGR00940 2a6301s01 monovalent cation:proton antiporter; InterPro: IPR005663    This family of proteins consists of bacterial multicomponent K+:H+ and Na+:H+ antiporters. The best characterised systems are the PhaABCDEFG system of Rhizobium meliloti which functions in pH adaptation and as a K+ efflux system and the MnhABCDEFG system of Staphylococcus aureus which functions as a Na+:H+ antiporter.; GO: 0015077 monovalent inorganic cation transmembrane transporter activity, 0030004 cellular monovalent inorganic cation homeostasis.
Probab=97.26  E-value=0.01  Score=33.25  Aligned_cols=168  Identities=20%  Similarity=0.282  Sum_probs=95.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
Q ss_conf             9999999999999999999724--28999999999999999999980870799999999999999999999998173111
Q gi|254780862|r    5 SLFFYLFSFMAIISSFLVVTVR--NPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIE   82 (199)
Q Consensus         5 ~i~F~~~a~l~i~sal~vi~~k--n~v~s~l~Li~~f~~vAgl~~lL~aeFla~~qIlVYvGAI~VLflFvIMll~~~~~   82 (199)
                      +..++++..+.+++++.....+  +=..|..-+-..-+.++-.|+.+.||=+|+.|.+|=.=. .|||+-.---+....+
T Consensus       629 ~p~~~~l~~~~i~~a~~i~f~~kfhRl~sii~lg~~G~~~~~~Fv~f~APDLAlTQllVE~vt-tvLflL~fyhLP~l~~  707 (809)
T TIGR00940       629 DPYFVVLVLILIAAALAIAFAKKFHRLASIILLGAVGYVVAILFVFFKAPDLALTQLLVEIVT-TVLFLLAFYHLPKLRK  707 (809)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH-HHHHHHHHHHCCCCCC
T ss_conf             499999999999999999988877899999999999999999999971641789999999999-9999998751752002


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHCCCCCCCC-CCCCCCHHHHHH--H----HHHHH-HHHHHHHHHHH
Q ss_conf             21233221001246899999999--999997766215666554-344611389999--9----99875-26999999999
Q gi|254780862|r   83 VAEPRKKRGFLGSFFIGILAAEL--IVCASNFMVFSAEGELSR-LVFKGNNVENIG--K----VLYTQ-YAYPLEISGFI  152 (199)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~iG--~----~L~t~-y~~~fel~svi  152 (199)
                      |+...+.+  .....++...+..  +..+..+.... +....+ ..-...|.++++  +    ...-| --+--.+-+.+
T Consensus       708 e~~~~~f~--l~n~~I~~GVG~~V~~I~L~~y~~Gt-e~~l~~IS~yy~E~~~~LA~G~NMVNVILVDFRGlDTLlE~~V  784 (809)
T TIGR00940       708 EKVAAKFS--LSNSLIAIGVGLLVILIALIAYALGT-EAGLESISKYYIENVKDLAGGKNMVNVILVDFRGLDTLLEVLV  784 (809)
T ss_pred             CCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCHHHHHHHHH
T ss_conf             45420133--44436762257999999999752100-0124577888876446641784258888850442579999999


Q ss_pred             HHHHHHHHHHHH-HHCCCCCCCCCH
Q ss_conf             999999999999-750588754689
Q gi|254780862|r  153 LLLSMIGAIVLM-LRHRRDIKRQDI  176 (199)
Q Consensus       153 LLvamiGAi~La-~~~~~~~krq~~  176 (199)
                      |=+|-.|.+..- .|||+...|+|+
T Consensus       785 LGIA~L~V~~MIKLRkkr~T~~~~V  809 (809)
T TIGR00940       785 LGIAALAVIAMIKLRKKRQTQREDV  809 (809)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf             9999999999999765305677789


No 23 
>MTH00015 ND6 NADH dehydrogenase subunit 6; Validated
Probab=96.99  E-value=0.02  Score=31.70  Aligned_cols=144  Identities=20%  Similarity=0.306  Sum_probs=90.5

Q ss_pred             HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf             99999999999999724289999999999999999999808707999999999999999999999981731112123322
Q gi|254780862|r   10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKK   89 (199)
Q Consensus        10 ~~a~l~i~sal~vi~~kn~v~s~l~Li~~f~~vAgl~~lL~aeFla~~qIlVYvGAI~VLflFvIMll~~~~~~~~~~~~   89 (199)
                      .+..+.+.+.+..-...+|+-=.+|-...=+..++.....-..-.|.+-=+||+|+-.|+|-...-+..   ... ...+
T Consensus         5 ~l~sl~~s~~l~lpL~~~PLsLGl~Il~~al~~s~~~a~~~SSWf~~ilFLIYIGGmLVMFAYfaAlsP---Nq~-~~~~   80 (155)
T MTH00015          5 MFFILMIASTFMLFLASTPIMLGINILAMALLLAATFASFMSSWFAFLIFLIYIGGMLVMFAYFLALTP---NQQ-IPNF   80 (155)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH---HHH-HCCC
T ss_conf             999999999999888168399999999999999999999998999999999999479999999999080---677-4123


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             100124689999999999999776621566655434461138999999987-5269999999999999999999997505
Q gi|254780862|r   90 RGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYT-QYAYPLEISGFILLLSMIGAIVLMLRHR  168 (199)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~L~t-~y~~~fel~sviLLvamiGAi~La~~~~  168 (199)
                      +..+.. ........    ...+.......      ...++.+ -...+|+ ++..-....+++|+.+++..+-++.|++
T Consensus        81 ~~~~~~-~i~~~~~~----~~~~~~~~~~~------~~~~~~~-~~~~lys~~~~~ili~L~~iLll~Li~VVKi~~~~~  148 (155)
T MTH00015         81 NIILYA-LITIITFS----ALMLLTNIKIP------IFNDISQ-GNQILYMLDSAPFLIILALILLLTMVIVVKLTSRSK  148 (155)
T ss_pred             HHHHHH-HHHHHHHH----HHHHHCCCCCC------HHHHCCC-HHHHHHCCCCCHHHHHHHHHHHHHHHHEEEEEECCC
T ss_conf             089999-99999999----99984678872------1520120-278987368857999999999999886045542478


Q ss_pred             C
Q ss_conf             8
Q gi|254780862|r  169 R  169 (199)
Q Consensus       169 ~  169 (199)
                      .
T Consensus       149 G  149 (155)
T MTH00015        149 G  149 (155)
T ss_pred             C
T ss_conf             9


No 24 
>COG1563 Predicted subunit of the Multisubunit Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=96.87  E-value=0.025  Score=31.11  Aligned_cols=73  Identities=23%  Similarity=0.286  Sum_probs=64.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             7999999999999999999997242899999999999999999998087079999999999999999999999
Q gi|254780862|r    3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIM   75 (199)
Q Consensus         3 ~~~i~F~~~a~l~i~sal~vi~~kn~v~s~l~Li~~f~~vAgl~~lL~aeFla~~qIlVYvGAI~VLflFvIM   75 (199)
                      .-+..-|++..+.+.+++..+..||+.+++..--..-...+-+|.+++||=+|+.+=+|-+|=...+|++.+-
T Consensus         7 ~~~~i~~~i~~ll~l~a~~~i~qrdll~AvI~~~~lsll~ally~ll~APDVAlTEA~vGa~l~t~v~~~alr   79 (87)
T COG1563           7 LGNLIEYLITILLLLSALLAIFQRDLLNAVIASGVLSLLAALLYTLLLAPDVALTEALVGAGLSTAVYAIALR   79 (87)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             8899999999999999999998665899999986899999999999669749999999980799999999999


No 25 
>MTH00214 ND6 NADH dehydrogenase subunit 6; Provisional
Probab=96.55  E-value=0.00029  Score=41.66  Aligned_cols=158  Identities=16%  Similarity=0.289  Sum_probs=94.6

Q ss_pred             HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf             99999999999999724289999999999999999999808707999999999999999999999981731112123322
Q gi|254780862|r   10 LFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKK   89 (199)
Q Consensus        10 ~~a~l~i~sal~vi~~kn~v~s~l~Li~~f~~vAgl~~lL~aeFla~~qIlVYvGAI~VLflFvIMll~~~~~~~~~~~~   89 (199)
                      ++...-+.+.+.+.+..+|.++++.|+.+=..-.++....|..|++.+-.+||-|+.+|.|-+-..|-.-+.+|. +..+
T Consensus         3 ll~v~~v~G~v~VasnpSPyfgalgLV~~a~~GC~il~~~G~sFlsLvLfLIYLGGMLVVFaYS~ALaae~yPe~-wg~~   81 (162)
T MTH00214          3 ILMFLFLLGLMMVIRAPSPYFGALGLVVLALVGCFLLLQMGGSFLSLILVLIYLGGMLVVFSYSAALAADLYPEP-WGMT   81 (162)
T ss_pred             EEHHHHHHHHHEEECCCCHHHHHHHHHHHHHCHHHHHHHCCCCHHHHHHHHHHHCCEEEEEEEEHHHHCCCCCCC-CCCC
T ss_conf             641678761214786897488859999988331351441698489999999983987996665445666788731-2673


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             10012468999999999999977662156665543446113899999998752699999999999999999999975058
Q gi|254780862|r   90 RGFLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRR  169 (199)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~L~t~y~~~fel~sviLLvamiGAi~La~~~~~  169 (199)
                      .... ....    .........+.................+-...-..+|+.=..-+.+.+-.|+.++.-..-++|..++
T Consensus        82 ~v~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~Gg~~l~~~gw~LlltLfvVLEltRG~~r  156 (162)
T MTH00214         82 SVLL-YALF----GTLLILMIGWPFLEGFCEISWWSLYSLNFFYLLFGLYERGGLLLVLAGWVLLLLLFSILEVVRGVKW  156 (162)
T ss_pred             EEEE-EEEE----EEEEEEEEEEEEECCEEECCEEEEEECCCCEEEEEEECCCHHHHHHHHHHHHHHHHEEEEEECCCCC
T ss_conf             5645-7789----8999999999995877961507996357528998851487899889999999986478999057871


Q ss_pred             CCCC
Q ss_conf             8754
Q gi|254780862|r  170 DIKR  173 (199)
Q Consensus       170 ~~kr  173 (199)
                      +.-|
T Consensus       157 G~lR  160 (162)
T MTH00214        157 GALR  160 (162)
T ss_pred             CEEE
T ss_conf             7171


No 26 
>PRK06280 hypothetical protein; Provisional
Probab=96.55  E-value=0.027  Score=30.91  Aligned_cols=73  Identities=18%  Similarity=0.159  Sum_probs=66.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999999999999972428999999999999999999980870799999999999999999999998
Q gi|254780862|r    4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMM   76 (199)
Q Consensus         4 ~~i~F~~~a~l~i~sal~vi~~kn~v~s~l~Li~~f~~vAgl~~lL~aeFla~~qIlVYvGAI~VLflFvIMl   76 (199)
                      +..+-|+...+++.|++.+...|+...++...-..-++.|-+|.+|-||=+|+.|=++-++-.-++|.|.|-=
T Consensus         2 ~~~i~yii~~l~ilsai~al~qrDLlk~~Vl~g~~gl~~A~Lf~~LlAPDVAlTeAiiG~Ai~pa~faftv~r   74 (80)
T PRK06280          2 SIYIDYIIMILVLLSAIGALIQKDLIKCAVLTGLGGLGLAYLFQSLLAPDVALTEAILGGAILPAFFAFTVRR   74 (80)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             1409999999999999999999999999999813888999999998286389999998504999999999999


No 27 
>MTH00138 ND6 NADH dehydrogenase subunit 6; Provisional
Probab=96.50  E-value=0.00067  Score=39.67  Aligned_cols=165  Identities=13%  Similarity=0.233  Sum_probs=96.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf             99999999999999999724289999999999999999999808707999999999999999999999981731112123
Q gi|254780862|r    7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP   86 (199)
Q Consensus         7 ~F~~~a~l~i~sal~vi~~kn~v~s~l~Li~~f~~vAgl~~lL~aeFla~~qIlVYvGAI~VLflFvIMll~~~~~~~~~   86 (199)
                      +++++...-+.+...+.+..+|.++++.|+..=..-.++....|..|++.+-.+||-|+..|.|.+.+-+..-+.+|. +
T Consensus         4 ~~~ll~~~~v~g~v~v~snPsPyygal~LV~~a~~gc~il~~~G~sFlsLVLfLIYLGGMLVVFaYs~Alaae~yPe~-~   82 (173)
T MTH00138          4 LMSLLLFGLVLGLVAVASNPSPYFAALGLVVVAGVGCGVLVGHGGSFLSLVLFLIYLGGMLVVFAYSAALAAEPYPES-W   82 (173)
T ss_pred             HHHHHHHHHHHEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCEEEEEEEEEEEECCCCCCC-C
T ss_conf             699999999852678987884678899999999866896863497189999999986886999998876544788843-5


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCCCCCCCCCC--HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             322100124689999999999999776621-5666554344611--389999-999875269999999999999999999
Q gi|254780862|r   87 RKKRGFLGSFFIGILAAELIVCASNFMVFS-AEGELSRLVFKGN--NVENIG-KVLYTQYAYPLEISGFILLLSMIGAIV  162 (199)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~iG-~~L~t~y~~~fel~sviLLvamiGAi~  162 (199)
                      ....  ...................+..+. ..........+.+  +.+..| ..+|+.=..-+-+.+--||.++.-++.
T Consensus        83 ~~~~--v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~Gv~~lY~~Gg~~L~~~gw~LLltLfvVLe  160 (173)
T MTH00138         83 GSRS--VLGYVVMYLLGVVLAAGLFWGGWYEGSWVVVDELKEFSVLRGDVGGVALMYSSGGGMLVLCAWVLLLTLFVVLE  160 (173)
T ss_pred             CCEE--EEEEEEEEEEEEEEEEEEEECCEECCEEEEEECCCCEEEEEEECEEEEEEECCCHHHHHHHHHHHHHHHHEEEE
T ss_conf             4707--99999999999999999995832343169998068507993016799986108799999999999998754699


Q ss_pred             HHHHCCCCCCCC
Q ss_conf             997505887546
Q gi|254780862|r  163 LMLRHRRDIKRQ  174 (199)
Q Consensus       163 La~~~~~~~krq  174 (199)
                      ++|-..++.-|+
T Consensus       161 l~RG~~rG~LRa  172 (173)
T MTH00138        161 LTRGLSRGALRA  172 (173)
T ss_pred             EECCCCCCEEEE
T ss_conf             954577316703


No 28 
>MTH00166 ND6 NADH dehydrogenase subunit 6; Provisional
Probab=96.38  E-value=0.056  Score=29.23  Aligned_cols=155  Identities=15%  Similarity=0.208  Sum_probs=90.5

Q ss_pred             HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf             9999999999972428999999999999999999980-870799999999999999999999998173111212332210
Q gi|254780862|r   13 FMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLL-GAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRG   91 (199)
Q Consensus        13 ~l~i~sal~vi~~kn~v~s~l~Li~~f~~vAgl~~lL-~aeFla~~qIlVYvGAI~VLflFvIMll~~~~~~~~~~~~~~   91 (199)
                      ......+..-..++||.--.+.++..-+.++..-... +....+-+-.+||.||.+|+|..+.-+..  .|.-+.+.+. 
T Consensus         7 ~~~~~~s~~f~~~~hPl~m~l~li~~tl~~sl~~~~~~~s~WfsyiLfLI~iGGmlVlF~Y~~Sl~~--Nekf~~~~~~-   83 (164)
T MTH00166          7 SLSLILSLIFLFSNHPLSMGLMLLIQTLLISLLTGLMMKSFWFSYILFLIFLGGMLVLFIYVTSLAS--NEKFKFSIKL-   83 (164)
T ss_pred             HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--HHHHHHHHHH-
T ss_conf             9999999999987687999999999999999999999976999999999999789999999999641--5566655899-


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             01246899999999999997766215666554344611389999999875269999999999999999999997505887
Q gi|254780862|r   92 FLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDI  171 (199)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~L~t~y~~~fel~sviLLvamiGAi~La~~~~~~~  171 (199)
                      .......-...................   ........+...+......+...........|+.+++-.+-++..++ +.
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~lf~~~~~~~~i~l~~yLl~~Li~Vvki~~~~~-GP  159 (164)
T MTH00166         84 LLFFLFILLIMSILLFITDKLLFNNFI---KNTEMKNENSLSLNKLYNFPTMLITLFMIIYLLLTLIVVVKITKIFK-GP  159 (164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CC
T ss_conf             999999999999999986588899888---88888678899999999764899999999999999999999986788-99


Q ss_pred             CCC
Q ss_conf             546
Q gi|254780862|r  172 KRQ  174 (199)
Q Consensus       172 krq  174 (199)
                      -|+
T Consensus       160 LR~  162 (164)
T MTH00166        160 LRS  162 (164)
T ss_pred             CCC
T ss_conf             999


No 29 
>MTH00065 ND6 NADH dehydrogenase subunit 6; Provisional
Probab=96.23  E-value=0.00077  Score=39.35  Aligned_cols=165  Identities=18%  Similarity=0.210  Sum_probs=94.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf             99999999999999999724289999999999999999999808707999999999999999999999981731112123
Q gi|254780862|r    7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP   86 (199)
Q Consensus         7 ~F~~~a~l~i~sal~vi~~kn~v~s~l~Li~~f~~vAgl~~lL~aeFla~~qIlVYvGAI~VLflFvIMll~~~~~~~~~   86 (199)
                      +.+++...-+.+.+.+-+..+|.++++.|+.+=..-.++....|..|++.+..+||-|+.+|.|-+-+-+..-+.+|. +
T Consensus         4 ~~~ll~~~~v~G~v~VasnPSPyfgalgLV~~a~~gCg~l~~~GgsFlsLvLfLIYLGGMLVVFaYs~Alaae~yPe~-w   82 (172)
T MTH00065          4 LGFLGMLGLVVGLVAVASNPSPYFAALGLVLAAVCGCLVLVELGVSFLSLVLLLIYLGGMLVVFAYSASLAAEPYPEA-W   82 (172)
T ss_pred             HHHHHHHHHHHEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCEEEEEEEEEEEEECCCCCC-C
T ss_conf             699999999632579998884578889999999744660121497089999999986986999999998980788820-1


Q ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCCCCCCCCCCCCCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             3221001246899999999-999997766215666554344611389999-99987526999999999999999999999
Q gi|254780862|r   87 RKKRGFLGSFFIGILAAEL-IVCASNFMVFSAEGELSRLVFKGNNVENIG-KVLYTQYAYPLEISGFILLLSMIGAIVLM  164 (199)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG-~~L~t~y~~~fel~sviLLvamiGAi~La  164 (199)
                      ..... ............. ......+.................+.+..| ..+|+.=..-+-+.+--|+.++.-..-|+
T Consensus        83 ~~~~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~Gv~~lY~~Gg~~L~v~gw~LlltLFVVLel~  161 (172)
T MTH00065         83 GSWSV-LVYVVFYLLVLILGYILFGCNFSVEFLFTNYDTEFSVVGGDWGGVGLMYSFGGWFLVISGWVLLLTLFVVLEVT  161 (172)
T ss_pred             CCCEE-EEEEEEEEEEEEEEEEEECCEECCCEEEEECCCCCEEEECCCEEEEEECCCCHHHHHHHHHHHHHHHHEEEEEE
T ss_conf             04189-99999999999999999821581257999859855399016879964315988997899999999862899996


Q ss_pred             HHCCCCCCC
Q ss_conf             750588754
Q gi|254780862|r  165 LRHRRDIKR  173 (199)
Q Consensus       165 ~~~~~~~kr  173 (199)
                      |-..++.-|
T Consensus       162 RG~~rG~LR  170 (172)
T MTH00065        162 RGLSRGSLR  170 (172)
T ss_pred             ECCCEEEEE
T ss_conf             348710780


No 30 
>MTH00109 ND6 NADH dehydrogenase subunit 6; Provisional
Probab=95.91  E-value=0.00076  Score=39.37  Aligned_cols=70  Identities=21%  Similarity=0.500  Sum_probs=61.8

Q ss_pred             HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             9999999999999997242899999999999999999998087079999999999999999999999817
Q gi|254780862|r    9 YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLD   78 (199)
Q Consensus         9 ~~~a~l~i~sal~vi~~kn~v~s~l~Li~~f~~vAgl~~lL~aeFla~~qIlVYvGAI~VLflFvIMll~   78 (199)
                      +++...-+.+.+.+.+..+|.++++.|+.+-..-.++....|..|++.+..+||-|+.+|-|-+..-|..
T Consensus         7 ~ll~v~~v~G~v~VasnPSPyfgalgLV~~a~~GCgiL~~~GgsFlsLVLfLIYLGGMLVVFAYS~ALaa   76 (175)
T MTH00109          7 FILSVLFVLGFVGFSSKPSPIYGGLGLIVSGGVGCGIVLSFGGSFLGLMVFLIYLGGMLVVFGYTTAMAT   76 (175)
T ss_pred             HHHHHHHHHEEEEEECCCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHCCEEEEEEEEHHHHC
T ss_conf             9999999870246887898067757788845241101000597289999999997887875655325645


No 31 
>MTH00115 ND6 NADH dehydrogenase subunit 6; Provisional
Probab=95.64  E-value=0.0014  Score=38.00  Aligned_cols=166  Identities=20%  Similarity=0.280  Sum_probs=95.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf             99999999999999999724289999999999999999999808707999999999999999999999981731112123
Q gi|254780862|r    7 FFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEP   86 (199)
Q Consensus         7 ~F~~~a~l~i~sal~vi~~kn~v~s~l~Li~~f~~vAgl~~lL~aeFla~~qIlVYvGAI~VLflFvIMll~~~~~~~~~   86 (199)
                      +.+++...-+.+.+.+-+..+|.++++.|+..=..-.++....|..|++.+-.+||-|+..|.|-+-+-+..-+.+|. +
T Consensus         4 ~~~l~~~~~v~G~v~VasnPSPyfgalgLV~~a~~gC~il~~~GgsFlsLvLfLIYLGGMLVVFaYs~Alaae~yPe~-w   82 (174)
T MTH00115          4 FVFLLGVCFVLGVVGVASNPSPYYGVVSLVFAAVFGCGLLVSLGGSFVSLVLFLVYLGGMLVVFAYSVSLAADPYPEA-W   82 (174)
T ss_pred             HHHHHHHHHHHEEEEEECCCCHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHCCEEEEEEEEEEEECCCCCCC-C
T ss_conf             799999999733678998896478779999988603432011497389999999986887999999989971787611-3


Q ss_pred             HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHCCCCCC-CCCCCCCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             3221001246-8999999999999977662156665-54344611389999-9998752699999999999999999999
Q gi|254780862|r   87 RKKRGFLGSF-FIGILAAELIVCASNFMVFSAEGEL-SRLVFKGNNVENIG-KVLYTQYAYPLEISGFILLLSMIGAIVL  163 (199)
Q Consensus        87 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~iG-~~L~t~y~~~fel~sviLLvamiGAi~L  163 (199)
                      ..+....... ...............+......... ........+.+..| ..+|+.=..-+.+.+-.||.++.-..-|
T Consensus        83 g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~Gv~~lY~~Gg~~L~~~gw~LlltLfVVLel  162 (174)
T MTH00115         83 GSWGVVGYVVGYVLVVLVLGVVLGGLWGMWGFGVVTVDAGGLFVVRLDFSGVSLFYSSGGGGLLVCGWGLLLTLFVVLEL  162 (174)
T ss_pred             CCCEEEEEEEEEEEEEEEEEEEEECCCCCEEEEEEEECCCEEEEEECCCEEEEHHHHCCHHHHHHHHHHHHHHHHEEEEE
T ss_conf             78388899999999999999999632452032278646980499902680851103388999999999999987456999


Q ss_pred             HHHCCCCCCC
Q ss_conf             9750588754
Q gi|254780862|r  164 MLRHRRDIKR  173 (199)
Q Consensus       164 a~~~~~~~kr  173 (199)
                      +|-.+++.-|
T Consensus       163 ~RG~~rG~lR  172 (174)
T MTH00115        163 VRGLSRGALR  172 (174)
T ss_pred             ECCCCCEEEC
T ss_conf             3466511477


No 32 
>PRK05640 putative monovalent cation/H+ antiporter subunit B; Reviewed
Probab=94.62  E-value=0.26  Score=25.56  Aligned_cols=65  Identities=28%  Similarity=0.277  Sum_probs=53.1

Q ss_pred             HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999999999724289999999999999999999808707999999999999999999999
Q gi|254780862|r    9 YLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFII   74 (199)
Q Consensus         9 ~~~a~l~i~sal~vi~~kn~v~s~l~Li~~f~~vAgl~~lL~aeFla~~qIlVYvGAI~VLflFvI   74 (199)
                      ..++.+.+.-|+.++.+||-.-|....-..-...|.+|.+++||=+|.-|+.|-.|- .-+|.|+-
T Consensus         4 i~l~~~~~~~Al~ivl~R~~l~s~il~~~~sll~ALl~vl~~APDVAlT~~~VG~~v-~~lf~fa~   68 (151)
T PRK05640          4 IILGIIAVTLALIVVLHRDFLASLISYSLASLLFALLAMLFRAPDVALSLIVVGGIV-IGLFIFAY   68 (151)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-HHHHHHHH
T ss_conf             999999999999999999999999999999999999999955825999999986799-99999999


No 33 
>MTH00064 ND6 NADH dehydrogenase subunit 6; Provisional
Probab=91.33  E-value=0.04  Score=30.03  Aligned_cols=61  Identities=16%  Similarity=0.460  Sum_probs=53.2

Q ss_pred             HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999724289999999999999999999808707999999999999999999999981
Q gi|254780862|r   17 ISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMML   77 (199)
Q Consensus        17 ~sal~vi~~kn~v~s~l~Li~~f~~vAgl~~lL~aeFla~~qIlVYvGAI~VLflFvIMll   77 (199)
                      ..-.....+....|+.+-.+-++....-.|...|----..+.++||+|+|=++|+|+=|..
T Consensus        13 ~l~~F~f~sh~l~yc~LLv~nsli~s~i~Y~~~GFSWY~LLf~LVYVGGVYILfIfVSv~~   73 (151)
T MTH00064         13 VLVLFSFSSHPLYYCLLLVVNSLISSLICYLVYGFSWYSLLFCLVYVGGVYILFIFVSVFS   73 (151)
T ss_pred             HHHHHEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCEEEEEEEEEEEC
T ss_conf             9887400288099999999999998756654140199999998513884999999999986


No 34 
>MTH00212 ND6 NADH dehydrogenase subunit 6; Provisional
Probab=91.13  E-value=0.92  Score=22.61  Aligned_cols=140  Identities=16%  Similarity=0.136  Sum_probs=77.4

Q ss_pred             HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf             99999999724289999999999999999999808707999999999999999999999981731112123322100124
Q gi|254780862|r   16 IISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGS   95 (199)
Q Consensus        16 i~sal~vi~~kn~v~s~l~Li~~f~~vAgl~~lL~aeFla~~qIlVYvGAI~VLflFvIMll~~~~~~~~~~~~~~~~~~   95 (199)
                      ....+..-...+|.-=..+....=+....+--..-..-.|-+-=+||+|+..|+|-.+.-+..-     .......... 
T Consensus         6 ~sl~~~~plm~qPLsLG~~il~~tl~~c~i~a~~~ssWygyiLFLIYVGGlLVMFaYvaALsPN-----~~~~~~~~~~-   79 (154)
T MTH00212          6 LGLVVLFPLIVHPLSLGFSLLVISLLCCMIVAVELAVWFGYSVFLVYVGGILVMFGYMVALTPN-----FGGFGFNSFW-   79 (154)
T ss_pred             HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----CCCCCHHHHH-
T ss_conf             9999999984381889999999999999999999848999999999990599999999996873-----1154239999-


Q ss_pred             HHHHHHHHHHHHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             6899999999999997766215-666554344611389999999875-269999999999999999999997505
Q gi|254780862|r   96 FFIGILAAELIVCASNFMVFSA-EGELSRLVFKGNNVENIGKVLYTQ-YAYPLEISGFILLLSMIGAIVLMLRHR  168 (199)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~iG~~L~t~-y~~~fel~sviLLvamiGAi~La~~~~  168 (199)
                       .....+..     ......+. +.+.+.. ....+.+.-|..++++ +..-....+++||.+++..+-+...++
T Consensus        80 -~~~~~~~~-----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~s~~n~~ili~L~~iLL~~LivVVKICyy~~  147 (154)
T MTH00212         80 -SLGVVVFV-----VNLCLGGGFDLSGTSG-VSLLEPEKSGSQLLSYKNISILLFLGGMLLIALLVVVKLCYYYK  147 (154)
T ss_pred             -HHHHHHHH-----HHHHHCCCCCCCCCCH-HHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHEEEEECCC
T ss_conf             -99999999-----9999714323466510-44400100035211479857999999999999997403320268


No 35 
>PRK07377 hypothetical protein; Provisional
Probab=88.90  E-value=1.4  Score=21.58  Aligned_cols=67  Identities=24%  Similarity=0.348  Sum_probs=51.1

Q ss_pred             HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999999999972428999999999999999999980870799999999999999999999998
Q gi|254780862|r    8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIVFFLFIIMM   76 (199)
Q Consensus         8 F~~~a~l~i~sal~vi~~kn~v~s~l~Li~~f~~vAgl~~lL~aeFla~~qIlVYvGAI~VLflFvIMl   76 (199)
                      -|++..+.=..+++.++..||.|+..+=-..-.-.|-+|.++||+=+|..+-+|  |.....-+++|-.
T Consensus         5 iyvi~~llpl~~~~~v~q~np~~alv~rgilg~~aal~y~llga~dvaltealv--gt~l~~~ly~vav   71 (185)
T PRK07377          5 LYVITALLPLTALLLVLQVNPYHALVIRGILGAIAALVYALLGAADVALTEALV--GTMLSITLYAVAV   71 (185)
T ss_pred             EEEHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH--HHHHHHHHHHHHH
T ss_conf             551998888988875014583589999999999999999981882599999999--9999999999998


No 36 
>pfam03137 OATP Organic Anion Transporter Polypeptide (OATP) family. This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules). Thus, Tamai et al. initiated the current scheme of using digits for rat OATPs and letters for human ones. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. Thi
Probab=85.58  E-value=2.2  Score=20.50  Aligned_cols=32  Identities=22%  Similarity=0.311  Sum_probs=22.3

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             4461138999999987526999999999999999999
Q gi|254780862|r  125 VFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAI  161 (199)
Q Consensus       125 ~~~~~~~~~iG~~L~t~y~~~fel~sviLLvamiGAi  161 (199)
                      ..+.+|.+.+|.     ||+-|.+.+.++++.-+=-.
T Consensus       214 ~i~~~dprWvGA-----WWLGfli~g~~~~~~aipl~  245 (582)
T pfam03137       214 IITPTDPRWVGA-----WWLGFLVCGGLLLLSAIPFF  245 (582)
T ss_pred             CCCCCCHHHHHH-----HHHHHHHHHHHHHHHHHHHH
T ss_conf             678788147778-----88899999999999999998


No 37 
>COG2851 CitM H+/citrate symporter [Energy production and conversion]
Probab=82.03  E-value=3.2  Score=19.65  Aligned_cols=41  Identities=27%  Similarity=0.382  Sum_probs=31.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHH
Q ss_conf             99987526999999999999999999999750588754689999
Q gi|254780862|r  136 KVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQ  179 (199)
Q Consensus       136 ~~L~t~y~~~fel~sviLLvamiGAi~La~~~~~~~krq~~~~q  179 (199)
                      +++ ..+..|-.++|+++..+  =|..+.+|||+|.++.|..+.
T Consensus       172 ~el-~~pliP~~i~Gl~~vl~--lA~~lG~kErkRlg~~~~~~~  212 (433)
T COG2851         172 AEL-FVPLIPIQIIGLVLVLA--LAWLLGKKERKRLGVIDLSEE  212 (433)
T ss_pred             HHH-HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCCHH
T ss_conf             998-75014899999999999--999963799987620668613


No 38 
>TIGR00805 oat sodium-independent organic anion transporter; InterPro: IPR004156   This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced . Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane.
Probab=81.72  E-value=1.9  Score=20.83  Aligned_cols=120  Identities=12%  Similarity=0.135  Sum_probs=64.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHCCCCCCC-----CCCCC
Q ss_conf             999999999999999999998173111212332210012468999999999999977---6621566655-----43446
Q gi|254780862|r   56 MITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRGFLGSFFIGILAAELIVCASNF---MVFSAEGELS-----RLVFK  127 (199)
Q Consensus        56 ~~qIlVYvGAI~VLflFvIMll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-----~~~~~  127 (199)
                      +.|++.=.|+ ..++-++|-.+|-..+   .+....+++....+.+++-++..+...   ..+......+     .....
T Consensus       178 ~~~~l~GIG~-tP~~~lGisy~ddf~~---~~~sply~gi~~~~~v~GP~~G~llgS~~~~~y~D~~~~nt~qil~~~~~  253 (723)
T TIGR00805       178 VAQLLRGIGE-TPIFPLGISYIDDFAK---SKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEQILDVILT  253 (723)
T ss_pred             HHHHHHHCCC-CCCCCCCCCEEECCCC---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHEECCCC
T ss_conf             9999741488-7654567641112566---44423799999999998899999998776753102688886671241378


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCH
Q ss_conf             113899999998752699999999999999999999975058875468999950084
Q gi|254780862|r  128 GNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP  184 (199)
Q Consensus       128 ~~~~~~iG~~L~t~y~~~fel~sviLLvamiGAi~La~~~~~~~krq~~~~q~~~~~  184 (199)
                      .+|.+.+|.     ||+-|.+.|-+.+.+-+==.-+=++.+++.+|++...+..++.
T Consensus       254 p~DprWiGA-----WW~GFl~~~~v~~~~s~PlfffPk~l~~~~~~~~~~~~~~~~~  305 (723)
T TIGR00805       254 PTDPRWIGA-----WWLGFLICSGVALLTSLPLFFFPKALPKEGKRKNVDVHEAEKL  305 (723)
T ss_pred             CCCCCEEHH-----HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             998534317-----8999999999999998557636552532356778777888887


No 39 
>pfam05454 DAG1 Dystroglycan (Dystrophin-associated glycoprotein 1). Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in human. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton. [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin rece
Probab=80.60  E-value=2.1  Score=20.69  Aligned_cols=55  Identities=13%  Similarity=0.140  Sum_probs=31.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCHHHCEEEEE
Q ss_conf             999875269999999999999999999997505887546899995008431568752
Q gi|254780862|r  136 KVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNSIVMVK  192 (199)
Q Consensus       136 ~~L~t~y~~~fel~sviLLvamiGAi~La~~~~~~~krq~~~~q~~~~~~~~i~~v~  192 (199)
                      ...+...+.+..++.++|++|+|.++..- |+| +.|-..-.||..|.++-.+-.-|
T Consensus       143 d~yL~TviPavivaaiLliA~iia~icYr-rrR-kGKl~~Eer~sFi~KGiPVIF~D  197 (290)
T pfam05454       143 DVYLHTVIPAVVVAAILLIAGIIAMICYR-KKR-KGKLTLEDQATFIKKGVPIIFAD  197 (290)
T ss_pred             CCEEEEHHHHHHHHHHHHHHHHHHHHHCC-CCC-CCCCCHHHHHHHHHCCCCEECCC
T ss_conf             10110067899999999999999999650-212-57776106667876598676343


No 40 
>KOG3626 consensus
Probab=78.39  E-value=4.3  Score=18.97  Aligned_cols=45  Identities=20%  Similarity=0.244  Sum_probs=28.3

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             55434461138999999987526999999999999999999999750588
Q gi|254780862|r  121 LSRLVFKGNNVENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRD  170 (199)
Q Consensus       121 ~~~~~~~~~~~~~iG~~L~t~y~~~fel~sviLLvamiGAi~La~~~~~~  170 (199)
                      ..+......|.+.+|.     ||+-|.+.+.+++.+-+--.-.-++.++.
T Consensus       305 ~~~~~it~~DPrWIGA-----WWlGFLi~g~~~~~~a~p~f~fPk~lp~~  349 (735)
T KOG3626         305 LSPIGITPTDPRWIGA-----WWLGFLICGALLLFSAVPLFFFPKELPKS  349 (735)
T ss_pred             CCCCCCCCCCCCHHHH-----HHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf             6888878889414668-----88999999999999998998386568632


No 41 
>pfam06664 MIG-14_Wnt-bd Wnt-binding factor required for Wnt secretion. MIG-14 is a Wnt-binding factor. Newly synthesized EGL-20/Wnt binds to MIG-14 in the Golgi, targetting the Wnt to the cell membrane for secretion. AP-2-mediated endocytosis and retromer retrieval at the sorting endosome would recycle MIG-14 to the Golgi, where it can bind to EGL-20/Wnt for next cycle of secretion.
Probab=68.05  E-value=7.8  Score=17.54  Aligned_cols=65  Identities=18%  Similarity=0.149  Sum_probs=42.8

Q ss_pred             HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             998087079999999999999999999999817311-12123322100124689999999999999
Q gi|254780862|r   46 FLLLGAEFVAMITLVVYVGAVIVFFLFIIMMLDIDI-EVAEPRKKRGFLGSFFIGILAAELIVCAS  110 (199)
Q Consensus        46 ~~lL~aeFla~~qIlVYvGAI~VLflFvIMll~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (199)
                      -+..+++|..++..+...--.+.|..|.....|... +.+++..+-+.+....++......+....
T Consensus       107 ~~~~~~~~~~ll~~i~q~~F~~~Ll~FwLv~~~~~r~~~~r~~~~~y~pki~~v~~~~~~~~i~~~  172 (291)
T pfam06664       107 TLLMPSPFMLLLDDIRQGIFYCYLLLFWLVFYDELRLENERKNLKFYLPKLIVVGIIWLALLVLDI  172 (291)
T ss_pred             HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             887457289999999999999999999999942876322454302158899999999999999999


No 42 
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=66.24  E-value=8.5  Score=17.34  Aligned_cols=44  Identities=14%  Similarity=0.144  Sum_probs=33.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             99999998752699999999999999999999975058875468
Q gi|254780862|r  132 ENIGKVLYTQYAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQD  175 (199)
Q Consensus       132 ~~iG~~L~t~y~~~fel~sviLLvamiGAi~La~~~~~~~krq~  175 (199)
                      ...|..++++..-+.|..++.+-++-.-...++.|++.+.|..|
T Consensus       250 al~G~llLgE~ls~~q~lGialVv~As~g~~lt~~r~p~~~~~~  293 (293)
T PRK10532        250 AVSGMIFLGETLTLIQWLALGAIIAASMGSTLTIRREPKIKEVD  293 (293)
T ss_pred             HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf             99999995688979999999999999999997057898766789


No 43 
>PRK10683 putrescine transporter subunit: membrane component of ABC superfamily; Provisional
Probab=52.83  E-value=15  Score=16.01  Aligned_cols=44  Identities=25%  Similarity=0.494  Sum_probs=21.9

Q ss_pred             CCCHHHHHHHHHHHHHHH----HHH-HHHHHHHHHHHHHHH-HHHHCCCC
Q ss_conf             611389999999875269----999-999999999999999-99750588
Q gi|254780862|r  127 KGNNVENIGKVLYTQYAY----PLE-ISGFILLLSMIGAIV-LMLRHRRD  170 (199)
Q Consensus       127 ~~~~~~~iG~~L~t~y~~----~fe-l~sviLLvamiGAi~-La~~~~~~  170 (199)
                      .+++...+|+.+++++.-    |+- ..|++|++-++-.+. ..|+++++
T Consensus       263 GG~~~~~i~~~i~~~f~~~~dwp~aaAlavvLl~i~iv~~~~~~r~~~k~  312 (317)
T PRK10683        263 GGPDSIMIGRVLWQEFFNNRDWPVASAVAIIMLLLLIVPIMWFHKHQQKS  312 (317)
T ss_pred             CCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             29985629999999998746805899999999999999999999998874


No 44 
>PRK07375 putative monovalent cation/H+ antiporter subunit C; Reviewed
Probab=48.88  E-value=17  Score=15.66  Aligned_cols=47  Identities=13%  Similarity=0.229  Sum_probs=29.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             99999999999999999999724289999999999999999999808
Q gi|254780862|r    4 QSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLG   50 (199)
Q Consensus         4 ~~i~F~~~a~l~i~sal~vi~~kn~v~s~l~Li~~f~~vAgl~~lL~   50 (199)
                      +...++....+...+...++..||.++-.+.+...--++--+++.+|
T Consensus         2 ~~~~~~~~~~l~~iG~y~ll~~~nlik~vigl~i~~~av~L~~i~~g   48 (112)
T PRK07375          2 QLMIYATILALLVIGLYGLIFKRNLLKKIIGLDVFQTGVNLFYIAIG   48 (112)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             36999999999999999999654199999999999866999888750


No 45 
>COG5416 Uncharacterized integral membrane protein [Function unknown]
Probab=48.14  E-value=17  Score=15.76  Aligned_cols=26  Identities=35%  Similarity=0.663  Sum_probs=15.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9987526999999999999999999999
Q gi|254780862|r  137 VLYTQYAYPLEISGFILLLSMIGAIVLM  164 (199)
Q Consensus       137 ~L~t~y~~~fel~sviLLvamiGAi~La  164 (199)
                      .++..+-+|..+  ++|+.++.|++.-.
T Consensus        52 ~lfg~~~~PLil--vil~s~v~G~Li~~   77 (98)
T COG5416          52 YLFGQWELPLIL--VILGAAVVGALIAM   77 (98)
T ss_pred             EECCHHHHHHHH--HHHHHHHHHHHHHH
T ss_conf             643133304999--99999999999999


No 46 
>TIGR03663 conserved hypothetical protein TIGR03663. Members of this protein family, uncommon and rather sporadically distributed, are found almost always in the same genomes as members of family TIGR03662, and frequently as a nearby gene. Members show some N-terminal sequence similarity with pfam02366, dolichyl-phosphate-mannose-protein mannosyltransferase. The few invariant residues in this family, found toward the N-terminus, include a dipeptide DE, a tripeptide HGP, and two different Arg residues. Up to three members may be found in a genome. The function is unknown.
Probab=46.84  E-value=19  Score=15.48  Aligned_cols=59  Identities=17%  Similarity=0.279  Sum_probs=37.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf             799999999999999999999724289999999999999999999808707999999999999999
Q gi|254780862|r    3 MQSLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLGAEFVAMITLVVYVGAVIV   68 (199)
Q Consensus         3 ~~~i~F~~~a~l~i~sal~vi~~kn~v~s~l~Li~~f~~vAgl~~lL~aeFla~~qIlVYvGAI~V   68 (199)
                      -.|+...+|..+++++.+.-..++++-    |+...-.+.|..+-.-+   -+.+.+.+..|+...
T Consensus       121 R~Di~~~~ftl~~~~~~~Ry~dt~~~r----yl~laa~~lal~~~tKE---~~~l~~~~f~~a~~l  179 (439)
T TIGR03663       121 RNDIFVAFFTLLAVGAAFRYLDTGKRR----YLFLAASALALAFTSKE---NAYLIILIFGGLLAI  179 (439)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCC----HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_conf             713999999999999999999478702----79999999999999646---899999999999999


No 47 
>PRK09497 potB spermidine/putrescine ABC transporter membrane protein; Reviewed
Probab=46.64  E-value=19  Score=15.46  Aligned_cols=76  Identities=20%  Similarity=0.240  Sum_probs=34.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHC-C
Q ss_conf             46899999999999997766215666554344611389999999875269999-----99999999999999999750-5
Q gi|254780862|r   95 SFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVENIGKVLYTQYAYPLE-----ISGFILLLSMIGAIVLMLRH-R  168 (199)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~L~t~y~~~fe-----l~sviLLvamiGAi~La~~~-~  168 (199)
                      ...-+.....++........+....     ...+++...++...|+++.-.+.     ..|++|++-+.....+..|. |
T Consensus       202 l~~Pgi~~~~il~fi~s~~~F~~~~-----~lgG~~~~~l~~~i~~~~~~~~~~~~aaA~svil~~i~~~~~~i~~r~~k  276 (285)
T PRK09497        202 LTMPGIIAGCLLVLLPAMGMFYVSD-----LLGGAKNLLIGNVIKSQFLNIRDWPFGAATSITLTIVMGLMLLVYYRASK  276 (285)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHEEE-----ECCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             1089999999999999988762100-----10489755299999999987069069999999999999999999999999


Q ss_pred             CCCCCCC
Q ss_conf             8875468
Q gi|254780862|r  169 RDIKRQD  175 (199)
Q Consensus       169 ~~~krq~  175 (199)
                      .-.||.+
T Consensus       277 ~~~kk~~  283 (285)
T PRK09497        277 LLNKKVE  283 (285)
T ss_pred             HHCCHHC
T ss_conf             9530141


No 48 
>COG2991 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.57  E-value=26  Score=14.75  Aligned_cols=32  Identities=22%  Similarity=0.124  Sum_probs=22.3

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
Q ss_conf             95799999999999999999999724289999
Q gi|254780862|r    1 MVMQSLFFYLFSFMAIISSFLVVTVRNPIYSV   32 (199)
Q Consensus         1 M~~~~i~F~~~a~l~i~sal~vi~~kn~v~s~   32 (199)
                      |..-.+.|.+|-.++.+-+++.+..|.|+...
T Consensus         1 M~t~lltFg~Fllvi~gMsiG~I~krk~I~GS   32 (77)
T COG2991           1 MTTFLLTFGIFLLVIAGMSIGYIFKRKSIKGS   32 (77)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHEECCCCCCC
T ss_conf             91579999999999999767643024503665


No 49 
>COG1006 MnhC Multisubunit Na+/H+ antiporter, MnhC subunit [Inorganic ion transport and metabolism]
Probab=37.15  E-value=27  Score=14.62  Aligned_cols=43  Identities=21%  Similarity=0.254  Sum_probs=26.6

Q ss_pred             HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             9999999999999999724289999999999999999999808
Q gi|254780862|r    8 FYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLG   50 (199)
Q Consensus         8 F~~~a~l~i~sal~vi~~kn~v~s~l~Li~~f~~vAgl~~lL~   50 (199)
                      +++.+.+.+.+|+..+.+||.++-.+.|-..--++--.++.+|
T Consensus         5 ~~~~~~~l~~iG~ylil~~nlik~iigl~i~~~~vnL~i~~~G   47 (115)
T COG1006           5 LYLTIGILVGIGVYLLLSRNLIKKIIGLSLIGTGVNLFLLLIG   47 (115)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             9999999999999999633499999999999866989864321


No 50 
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=35.62  E-value=19  Score=15.41  Aligned_cols=28  Identities=29%  Similarity=0.377  Sum_probs=22.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             8999999987526999999999999999
Q gi|254780862|r  131 VENIGKVLYTQYAYPLEISGFILLLSMI  158 (199)
Q Consensus       131 ~~~iG~~L~t~y~~~fel~sviLLvami  158 (199)
                      -.-.|..+|..||+||-+++++-|-..=
T Consensus       712 ~~ivGlv~FlqyWYWfPL~hf~SLsf~P  739 (926)
T COG5116         712 DRIVGLVLFLQYWYWFPLIHFVSLSFLP  739 (926)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             7888999999999987899888663275


No 51 
>pfam00124 Photo_RC Photosynthetic reaction centre protein.
Probab=34.11  E-value=30  Score=14.34  Aligned_cols=44  Identities=23%  Similarity=0.243  Sum_probs=25.2

Q ss_pred             HHHHHHHHHH------HHHHHHHHHHHHH--HHCCCCCCCCCHHHHHHCCHH
Q ss_conf             2699999999------9999999999999--750588754689999500843
Q gi|254780862|r  142 YAYPLEISGF------ILLLSMIGAIVLM--LRHRRDIKRQDISKQLESNPD  185 (199)
Q Consensus       142 y~~~fel~sv------iLLvamiGAi~La--~~~~~~~krq~~~~q~~~~~~  185 (199)
                      |.-||-..|+      -||-||=|+.+++  +++++|.-+|..++.-..|++
T Consensus       147 ~ynPfHml~I~f~~gsaLl~AmHGatIls~~~~~~~~~~~q~~~~g~~~e~e  198 (257)
T pfam00124       147 HYNPFHMLGIAFLFGSALLLAMHGATILSVLRFGGGEEVEQITDRGTGQERE  198 (257)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHCHHHEEEECCCCCCHHHHHCCCCCCHHHH
T ss_conf             1483887525898735999986020203441268984033311578754789


No 52 
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=27.67  E-value=39  Score=13.72  Aligned_cols=161  Identities=16%  Similarity=0.142  Sum_probs=69.5

Q ss_pred             HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf             9999999999724289999999999999999999808--70799999999999999999999998173111212332210
Q gi|254780862|r   14 MAIISSFLVVTVRNPIYSVFSLIFAFVNAAGLFLLLG--AEFVAMITLVVYVGAVIVFFLFIIMMLDIDIEVAEPRKKRG   91 (199)
Q Consensus        14 l~i~sal~vi~~kn~v~s~l~Li~~f~~vAgl~~lL~--aeFla~~qIlVYvGAI~VLflFvIMll~~~~~~~~~~~~~~   91 (199)
                      -++..|+.+-...+|.+...-.+..|++-  .+-..|  -.|=|.-++=|-   .+.-.-=...+....--..-....+.
T Consensus        38 GALifaiiv~~~~~p~~T~~~~iv~~isG--~~Ws~GQ~~Qfka~~~iGVS---kamPiStG~QLVg~sL~gV~~f~EW~  112 (288)
T COG4975          38 GALIFAIIVFLFVSPELTLTIFIVGFISG--AFWSFGQANQFKAIQLIGVS---KAMPISTGMQLVGTSLFGVFVFHEWT  112 (288)
T ss_pred             HHHHHHHHHHEEECCCCCHHHHHHHHHHH--HHHHHHHHHHHHHEEEEEEE---CCCCCCCHHHHHHCEEEEEEEEECCC
T ss_conf             99999987730326763255678998746--67621125423210021000---13666511567530006689970168


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHH---------HHHHHHHH--HHHHHHHHHHHHHHHHH---
Q ss_conf             01246899999999999997766215666554344611389---------99999987--52699999999999999---
Q gi|254780862|r   92 FLGSFFIGILAAELIVCASNFMVFSAEGELSRLVFKGNNVE---------NIGKVLYT--QYAYPLEISGFILLLSM---  157 (199)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~iG~~L~t--~y~~~fel~sviLLvam---  157 (199)
                      .+...+.+..+..++........+.  ...+....+..|.+         ++|+.+|.  .-.+.++-.+.+|=-|+   
T Consensus       113 t~~~~IlG~iAliliviG~~lTs~~--~~~nk~~~~~~n~kkgi~~L~iSt~GYv~yvvl~~~f~v~g~saiLPqAiGMv  190 (288)
T COG4975         113 TPTQIILGFIALILIVIGIYLTSKQ--DRNNKEEENPSNLKKGIVILLISTLGYVGYVVLFQLFDVDGLSAILPQAIGMV  190 (288)
T ss_pred             CCHHHHHHHHHHHHHHHHHEEEEEE--CCCCCCCCCHHHHHHHEEEEEEECCCEEEEEEEECCCCCCCHHHHHHHHHHHH
T ss_conf             6145789999999998761575410--44421214767665232356663121366576610015541320127787799


Q ss_pred             HHHHHHHHHCCCCCCCCCHHHHHH
Q ss_conf             999999975058875468999950
Q gi|254780862|r  158 IGAIVLMLRHRRDIKRQDISKQLE  181 (199)
Q Consensus       158 iGAi~La~~~~~~~krq~~~~q~~  181 (199)
                      +||+.+.+++++...++...+++.
T Consensus       191 ~~ali~~~~~~~~~~~K~t~~nii  214 (288)
T COG4975         191 IGALILGFFKMEKRFNKYTWLNII  214 (288)
T ss_pred             HHHHHHHHCCCCCCHHHHHHHHHH
T ss_conf             999998651565306788999876


No 53 
>KOG0510 consensus
Probab=27.36  E-value=22  Score=15.11  Aligned_cols=52  Identities=17%  Similarity=0.353  Sum_probs=26.1

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHCCCH----------------HHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             289999999999999999999808707----------------9999999999999999999999817
Q gi|254780862|r   27 NPIYSVFSLIFAFVNAAGLFLLLGAEF----------------VAMITLVVYVGAVIVFFLFIIMMLD   78 (199)
Q Consensus        27 n~v~s~l~Li~~f~~vAgl~~lL~aeF----------------la~~qIlVYvGAI~VLflFvIMll~   78 (199)
                      +=+-..-..+-.++-+++++..+.+-+                ++.+-.+.|+|---+.=+|++|+..
T Consensus       590 ~Y~~~i~Nimew~iyts~li~v~~~~~~~~~~~Q~~laa~aV~l~W~nllLmi~~~p~~gIfvvM~~~  657 (929)
T KOG0510         590 HYFMDIENIMEWFIYTSALITVYPLFFEITAHLQWVLAAFAVLLGWMNLLLMIGRFPVFGIFVVMLEV  657 (929)
T ss_pred             HHHHHHHHHHHHHHHHHHHHEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHH
T ss_conf             88761577889998760363141202021899999999999999999999997347755441378999


No 54 
>PRK11462 putative transporter; Provisional
Probab=27.10  E-value=40  Score=13.66  Aligned_cols=20  Identities=30%  Similarity=0.194  Sum_probs=7.8

Q ss_pred             HHHHHHHHHHHHHHHHHHCC
Q ss_conf             99999999999999998173
Q gi|254780862|r   60 VVYVGAVIVFFLFIIMMLDI   79 (199)
Q Consensus        60 lVYvGAI~VLflFvIMll~~   79 (199)
                      ++-+|.-....+.--|+-|.
T Consensus       327 ~~g~~~~~~~~l~~am~aDv  346 (460)
T PRK11462        327 VIGVLHQLVTPIQWVMMSDT  346 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999986658


No 55 
>pfam06365 CD34_antigen CD34/Podocalyxin family. This family consists of several mammalian CD34 antigen proteins. The CD34 antigen is a human leukocyte membrane protein expressed specifically by lymphohematopoietic progenitor cells. CD34 is a phosphoprotein. Activation of protein kinase C (PKC) has been found to enhance CD34 phosphorylation. This family contains several eukaryotic podocalyxin proteins. Podocalyxin is a major membrane protein of the glomerular epithelium and is thought to be involved in maintenance of the architecture of the foot processes and filtration slits characteristic of this unique epithelium by virtue of its high negative charge. Podocalyxin functions as an anti-adhesin that maintains an open filtration pathway between neighbouring foot processes in the glomerular epithelium by charge repulsion.
Probab=26.54  E-value=41  Score=13.60  Aligned_cols=33  Identities=24%  Similarity=0.183  Sum_probs=24.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             269999999999999999999997505887546
Q gi|254780862|r  142 YAYPLEISGFILLLSMIGAIVLMLRHRRDIKRQ  174 (199)
Q Consensus       142 y~~~fel~sviLLvamiGAi~La~~~~~~~krq  174 (199)
                      .+...-+.|++||++..+..+.-++++.-.|+|
T Consensus       102 lIaLV~~gs~llLi~~~~~~Y~c~qRrs~~~~~  134 (202)
T pfam06365       102 LIALVTSGGFLLLIAAIYTGYCCHQRRSWRKDQ  134 (202)
T ss_pred             EEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf             765287647999999998778753000677665


No 56 
>KOG2062 consensus
Probab=26.24  E-value=42  Score=13.57  Aligned_cols=30  Identities=23%  Similarity=0.294  Sum_probs=24.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             899999998752699999999999999999
Q gi|254780862|r  131 VENIGKVLYTQYAYPLEISGFILLLSMIGA  160 (199)
Q Consensus       131 ~~~iG~~L~t~y~~~fel~sviLLvamiGA  160 (199)
                      -..+|...|+.||+||-++.++-|.+-=-+
T Consensus       715 ~~vvGl~~Flq~WyWfPL~~flSLaf~PT~  744 (929)
T KOG2062         715 DAVVGLVVFLQYWYWFPLIHFLSLAFTPTT  744 (929)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCE
T ss_conf             878999999888998789999998627606


No 57 
>KOG3817 consensus
Probab=25.67  E-value=43  Score=13.51  Aligned_cols=38  Identities=21%  Similarity=0.252  Sum_probs=14.2

Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHH--HHHHHHHHHHHHHHHH
Q ss_conf             56665543446113899999998--7526999999999999
Q gi|254780862|r  117 AEGELSRLVFKGNNVENIGKVLY--TQYAYPLEISGFILLL  155 (199)
Q Consensus       117 ~~~~~~~~~~~~~~~~~iG~~L~--t~y~~~fel~sviLLv  155 (199)
                      +..+.+.....+. .+.+|..+.  +-...-+-++.+|+..
T Consensus       247 p~d~RS~~ilmWt-Lqli~lvl~Yfsvq~p~~a~A~iI~~l  286 (452)
T KOG3817         247 PKDPRSQTILMWT-LQLIGLVLAYFSVQHPSAAIAAIIMVL  286 (452)
T ss_pred             CCCCCHHHHHHHH-HHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf             9981043599999-999999999985111789999999999


No 58 
>pfam04995 CcmD Heme exporter protein D (CcmD). The CcmD protein is part of a C-type cytochrome biogenesis operon. The exact function of this protein is uncertain. It has been proposed that CcmC, CcmD and CcmE interact directly with each other, establishing a cytoplasm to periplasm haem delivery pathway for cytochrome c maturation. This protein is found fused to CcmE in Pseudomonas fluorescens cycJ. These proteins contain a predicted transmembrane helix.
Probab=24.41  E-value=46  Score=13.38  Aligned_cols=27  Identities=15%  Similarity=0.066  Sum_probs=16.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             526999999999999999999999750
Q gi|254780862|r  141 QYAYPLEISGFILLLSMIGAIVLMLRH  167 (199)
Q Consensus       141 ~y~~~fel~sviLLvamiGAi~La~~~  167 (199)
                      -|+.+=--++++.+++++......+|+
T Consensus         5 ~yVw~sygit~l~l~~li~~s~~~~r~   31 (46)
T pfam04995         5 FYVWSSYGITLLVLAGLIVWSLRDRRR   31 (46)
T ss_pred             EEHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             002999899999999999999998899


No 59 
>TIGR01627 A_thal_3515 uncharacterized plant-specific domain TIGR01627; InterPro: IPR006514   These sequences contain an uncharacterised domain found in both Arabidopsis thaliana (at least 10 copies) and Oryza sativa. Most member proteins have only a short stretch of sequence N-terminal to this domain, but one has a long N-terminal extension that includes a protein kinase domain (IPR000719 from INTERPRO). .
Probab=23.01  E-value=33  Score=14.14  Aligned_cols=31  Identities=16%  Similarity=0.234  Sum_probs=21.5

Q ss_pred             HHHHHHHHHHHCCCCCCCCCHHH-HHHCCHHH
Q ss_conf             99999999975058875468999-95008431
Q gi|254780862|r  156 SMIGAIVLMLRHRRDIKRQDISK-QLESNPDN  186 (199)
Q Consensus       156 amiGAi~La~~~~~~~krq~~~~-q~~~~~~~  186 (199)
                      ++--|=+|||+++.+..+.|||- ++.|+.++
T Consensus       169 sIyTAavLAR~~~~g~~kTdVFVHDv~R~vE~  200 (238)
T TIGR01627       169 SIYTAAVLARKKEDGSEKTDVFVHDVYRDVEK  200 (238)
T ss_pred             HHHHHHHHHHCCCCCCCCCCEEEECCCCHHHH
T ss_conf             89999887413688595563578616561887


No 60 
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.57  E-value=48  Score=13.25  Aligned_cols=34  Identities=21%  Similarity=0.297  Sum_probs=23.7

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCH
Q ss_conf             9999999999999975058875468999950084
Q gi|254780862|r  151 FILLLSMIGAIVLMLRHRRDIKRQDISKQLESNP  184 (199)
Q Consensus       151 viLLvamiGAi~La~~~~~~~krq~~~~q~~~~~  184 (199)
                      +.||.++..++...+|+-..++.|..-..-+++.
T Consensus        79 v~lllGf~AG~lnv~Rsag~va~~~~~~~~s~~~  112 (116)
T COG5336          79 VFLLLGFGAGVLNVLRSAGKVAEQGQAPKSSGND  112 (116)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf             9999999899999999850011456688887666


No 61 
>pfam05968 Bacillus_PapR Bacillus PapR protein. This family consists of the Bacillus species specific PapR protein. The papR gene belongs to the PlcR regulon and is located 70 bp downstream from plcR. It encodes a 48-amino-acid peptide. Disruption of the papR gene abolishes expression of the PlcR regulon, resulting in a large decrease in haemolysis and virulence in insect larvae. A processed form of PapR activates the PlcR regulon by allowing PlcR to bind to its DNA target. This activating mechanism is strain specific.
Probab=20.98  E-value=54  Score=12.99  Aligned_cols=36  Identities=33%  Similarity=0.412  Sum_probs=22.7

Q ss_pred             HHHHHHHHHHHHHHHHH---HHCCCCCCCCCHHHHHHCC
Q ss_conf             99999999999999999---7505887546899995008
Q gi|254780862|r  148 ISGFILLLSMIGAIVLM---LRHRRDIKRQDISKQLESN  183 (199)
Q Consensus       148 l~sviLLvamiGAi~La---~~~~~~~krq~~~~q~~~~  183 (199)
                      +++-+|..||.-.|.+.   .++..-.-.||..-|...|
T Consensus         5 LigslltlAM~wGislgdtalek~q~ish~~qeVQlAsd   43 (48)
T pfam05968         5 LIGSLLTLAMLWGISLGDTALEKDQAISHQQQEVQLASD   43 (48)
T ss_pred             HHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCHHHHHHHC
T ss_conf             886899999995332131344153530255155534302


No 62 
>PRK12489 anaerobic C4-dicarboxylate transporter; Reviewed
Probab=20.91  E-value=54  Score=12.98  Aligned_cols=42  Identities=19%  Similarity=0.282  Sum_probs=21.1

Q ss_pred             HHHHHHHH----HHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCHHHC
Q ss_conf             99999999----99999999999975058875468999950084315
Q gi|254780862|r  145 PLEISGFI----LLLSMIGAIVLMLRHRRDIKRQDISKQLESNPDNS  187 (199)
Q Consensus       145 ~fel~svi----LLvamiGAi~La~~~~~~~krq~~~~q~~~~~~~~  187 (199)
                      .+++.++-    ++..+++|.. +.|+++|-++.+.||+...|.+.+
T Consensus       167 ~~~iL~V~iPat~ig~l~~a~~-s~~~GkeL~~DpeyQ~Rl~~~~~~  212 (440)
T PRK12489        167 LLDILAVTIPATLIGVLAAALW-SLRRGKDLDKDPEFQERLKDPEFR  212 (440)
T ss_pred             HHHHHHEEHHHHHHHHHHHHHH-HHHCCCCCCCCHHHHHHHHCCCCC
T ss_conf             7988440273899999999999-971398633398899987376301


No 63 
>PRK13718 conjugal transfer protein TrbE; Provisional
Probab=20.54  E-value=55  Score=12.94  Aligned_cols=18  Identities=6%  Similarity=0.342  Sum_probs=8.1

Q ss_pred             HHHHHHHHHHHHHHHCCC
Q ss_conf             999999999999981731
Q gi|254780862|r   63 VGAVIVFFLFIIMMLDID   80 (199)
Q Consensus        63 vGAI~VLflFvIMll~~~   80 (199)
                      .+.-.++|.|.--|++..
T Consensus        54 g~~~~~ly~ffs~Ltkl~   71 (84)
T PRK13718         54 GVLLFILYFFFSALTKLQ   71 (84)
T ss_pred             HHHHHHHHHHHHHHHHHH
T ss_conf             799999999999999985


No 64 
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein; InterPro: IPR005696    Bacteriocins are antibacterial proteinaceous compounds produced by bacteria. In Gram-positive bacteria, they are divided into four classes. Within the class II, constituted by non-modified peptides produced mainly by lactic acid bacteria, bacteriocins of the subclass IIa, such as mesentericin Y105, are of particular interest. They are active against the foodborne pathogen Listeria monocytogenes and share a similar primary structure, with a conserved N-terminal motif (YGNGV). Subclass IIa bacteriocins induce membrane permeabilization of sensitive strains, but their target specificity and their molecular mode of action remain elusive. This family of proteins is involved in the secretion of such bacteriocins although the mechanism of this process is not well understood. ; GO: 0005215 transporter activity, 0006810 transport.
Probab=20.28  E-value=56  Score=12.90  Aligned_cols=25  Identities=12%  Similarity=0.242  Sum_probs=8.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             2699999999999999999999975
Q gi|254780862|r  142 YAYPLEISGFILLLSMIGAIVLMLR  166 (199)
Q Consensus       142 y~~~fel~sviLLvamiGAi~La~~  166 (199)
                      +.-+.++..+|||+.+++--..|+|
T Consensus        20 Fs~l~I~P~~lLLv~~~lFs~fAkk   44 (476)
T TIGR01000        20 FSTLVIVPIFLLLVFLVLFSLFAKK   44 (476)
T ss_pred             CHHHHHHHHHHHHHHHHHHHCCCEE
T ss_conf             1268999999999999997220107


Done!