Query gi|254780862|ref|YP_003065275.1| NADH dehydrogenase subunit J [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 199
No_of_seqs 111 out of 1690
Neff 6.6
Searched_HMMs 23785
Date Tue May 31 22:08:37 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780862.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1s7q_A H-2KB, H-2 class I hist 26.1 12 0.00048 15.4 0.0 31 146-176 291-321 (348)
2 2k21_A Potassium voltage-gated 16.5 31 0.0013 13.1 0.5 23 157-179 66-89 (138)
3 1tzs_X 23-MER peptide from PEL 14.9 42 0.0018 12.4 0.9 16 141-156 2-17 (26)
4 1pi7_A VPU protein, U ORF prot 13.2 25 0.001 13.6 -0.7 29 146-174 4-35 (36)
5 3bz1_A Photosystem Q(B) protei 8.6 75 0.0032 11.0 6.7 35 142-176 193-235 (344)
6 2klu_A T-cell surface glycopro 8.2 79 0.0033 10.9 3.8 21 165-185 35-55 (70)
7 1rzh_M Reaction center protein 6.9 92 0.0039 10.5 5.2 37 131-167 186-228 (307)
8 1p6v_A SSRA-binding protein; S 5.9 99 0.0041 10.4 0.0 21 169-189 135-155 (156)
9 2jwa_A Receptor tyrosine-prote 4.8 1.3E+02 0.0054 9.8 3.1 22 152-173 21-44 (44)
10 2gsm_A Cytochrome C oxidase su 4.7 1.3E+02 0.0055 9.7 4.3 41 5-45 286-326 (566)
No 1
>1s7q_A H-2KB, H-2 class I histocompatibility antigen, K-B alpha chain; LCMV, MHC class I, immune escape, immune system; 1.99A {Mus musculus} SCOP: b.1.1.2 d.19.1.1 PDB: 1s7r_A 1s7s_A 1s7t_A 1bii_A 1s7u_A 1s7v_A 1s7w_A 1s7x_A 1nez_A*
Probab=26.08 E-value=12 Score=15.45 Aligned_cols=31 Identities=16% Similarity=0.177 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCH
Q ss_conf 9999999999999999999750588754689
Q gi|254780862|r 146 LEISGFILLLSMIGAIVLMLRHRRDIKRQDI 176 (199)
Q Consensus 146 fel~sviLLvamiGAi~La~~~~~~~krq~~ 176 (199)
..+..+++++++++.++.-+|++++.|..+.
T Consensus 291 ~~~~~~~~~~~v~~~~~~~rrr~~g~~~~~~ 321 (348)
T 1s7q_A 291 VVLGAAIVTGAVVAFVMKMRRRNTGGKGGDY 321 (348)
T ss_dssp -------------------------------
T ss_pred HHHHHHHHHHHEEEEEEEEEECCCCCCCCCC
T ss_conf 4699999998603889999965899999987
No 2
>2k21_A Potassium voltage-gated channel subfamily E member; KCNE1, membrane protein, potassium channel, MINK, auxilliary subunit, micelles, ION transport; NMR {Homo sapiens}
Probab=16.49 E-value=31 Score=13.11 Aligned_cols=23 Identities=17% Similarity=0.161 Sum_probs=10.8
Q ss_pred HHHHHHHH-HHCCCCCCCCCHHHH
Q ss_conf 99999999-750588754689999
Q gi|254780862|r 157 MIGAIVLM-LRHRRDIKRQDISKQ 179 (199)
Q Consensus 157 miGAi~La-~~~~~~~krq~~~~q 179 (199)
.+++|.|. .|.|+..++.|++.|
T Consensus 66 f~~gImlsyiRSKk~E~s~DPyh~ 89 (138)
T 2k21_A 66 FTLGIMLSYIRSKKLEHSNDPFNV 89 (138)
T ss_dssp HHHHHHHHHHHHHHHCCCCCTTTT
T ss_pred HHHHHHHHHHHHHHHCCCCCCHHH
T ss_conf 999999987788750157993677
No 3
>1tzs_X 23-MER peptide from PELB-IGG kappa light chain fusion protein; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens}
Probab=14.94 E-value=42 Score=12.41 Aligned_cols=16 Identities=31% Similarity=0.708 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 5269999999999999
Q gi|254780862|r 141 QYAYPLEISGFILLLS 156 (199)
Q Consensus 141 ~y~~~fel~sviLLva 156 (199)
+|.+|-..++++||.|
T Consensus 2 kyllptaaagllllaa 17 (26)
T 1tzs_X 2 KYLLPTAAAGLLLLAA 17 (26)
T ss_pred CCCCHHHHHHHHHHHC
T ss_conf 5213007878899945
No 4
>1pi7_A VPU protein, U ORF protein; alpha helix, viral protein; NMR {Human immunodeficiency virus 1} SCOP: j.35.1.1 PDB: 1pi8_A 1pje_A 2gof_A 2goh_A 2jpx_A
Probab=13.22 E-value=25 Score=13.65 Aligned_cols=29 Identities=28% Similarity=0.383 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHCCCCCCCC
Q ss_conf 9999999999999999999---7505887546
Q gi|254780862|r 146 LEISGFILLLSMIGAIVLM---LRHRRDIKRQ 174 (199)
Q Consensus 146 fel~sviLLvamiGAi~La---~~~~~~~krq 174 (199)
.+++-+-|.+|++=||+.= .-+.++.|||
T Consensus 4 ~qiaivalvvaii~aivvw~iv~ie~r~~k~~ 35 (36)
T 1pi7_A 4 IQIAIVALVVAIIIAIVVWSIVIIEGRGGKKK 35 (36)
T ss_pred EEEEHHHHHHHHHHHHHHEEEEEEEECCCCCC
T ss_conf 66719999999999986205899981364437
No 5
>3bz1_A Photosystem Q(B) protein; electron transport photosystem, membrane complex, transmembrane alpha-helix; HET: CLA PHO HEM PL9 BCR DGD LHG SQD LMG LMT; 2.90A {Thermosynechococcus elongatus} PDB: 1s5l_A* 2axt_A* 3bz2_A* 3kzi_A* 1w5c_A* 1izl_A* 3a0b_A* 3a0h_A*
Probab=8.65 E-value=75 Score=11.01 Aligned_cols=35 Identities=20% Similarity=0.334 Sum_probs=23.0
Q ss_pred HHHHHHHHHH------HHHHHHHHHHHHHH--HCCCCCCCCCH
Q ss_conf 2699999999------99999999999997--50588754689
Q gi|254780862|r 142 YAYPLEISGF------ILLLSMIGAIVLML--RHRRDIKRQDI 176 (199)
Q Consensus 142 y~~~fel~sv------iLLvamiGAi~La~--~~~~~~krq~~ 176 (199)
|.-||-..|+ -|+-||=||.+++- ||+++.|.++.
T Consensus 193 ~ynPFHml~Ia~~fG~aLl~AmHGatVls~l~~e~~e~~s~~~ 235 (344)
T 3bz1_A 193 LMHPFHQLGVAGVFGGALFCAMHGSLVTSSLIRETTETESANY 235 (344)
T ss_dssp GGSHHHHHHHHHHHHHHHHHHHHHHHHHHTBBCCSCTTSCTTT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 1381998889998732999997652775035566766567656
No 6
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=8.18 E-value=79 Score=10.89 Aligned_cols=21 Identities=29% Similarity=0.305 Sum_probs=15.4
Q ss_pred HHCCCCCCCCCHHHHHHCCHH
Q ss_conf 750588754689999500843
Q gi|254780862|r 165 LRHRRDIKRQDISKQLESNPD 185 (199)
Q Consensus 165 ~~~~~~~krq~~~~q~~~~~~ 185 (199)
++++++.+|.+.-+|...+.+
T Consensus 35 ~hRrrrAeRmsqikrllsekK 55 (70)
T 2klu_A 35 RHRRRQAERMSQIKRLLSEKK 55 (70)
T ss_dssp SCCSSSCTTSSHHHHHHHSSS
T ss_pred HHHHHHHHHHHHHHHHCCCCC
T ss_conf 888889988999998505367
No 7
>1rzh_M Reaction center protein M chain; bacterial photosynthesis, proton transfer pathway, revertant, X-RAY crystallography; HET: BCL BPH BPB U10 SPO LDA HTO CDL; 1.80A {Rhodobacter sphaeroides} SCOP: f.26.1.1 PDB: 1rzz_M* 1s00_M* 3dts_M* 2j8c_M* 1aig_M* 1f6n_M* 1fnp_M* 1fnq_M* 1jh0_M* 1l9b_M* 1l9j_M* 1m3x_M* 1ogv_M* 1pcr_M* 1rg5_M* 1rgn_M* 1rqk_M* 1aij_M* 1z9k_B* 2bnp_B* ...
Probab=6.87 E-value=92 Score=10.54 Aligned_cols=37 Identities=24% Similarity=0.327 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHC
Q ss_conf 899999998752699999999------9999999999999750
Q gi|254780862|r 131 VENIGKVLYTQYAYPLEISGF------ILLLSMIGAIVLMLRH 167 (199)
Q Consensus 131 ~~~iG~~L~t~y~~~fel~sv------iLLvamiGAi~La~~~ 167 (199)
+.+++..-.+=|.=||-..|+ -||-||=||.+|+-.+
T Consensus 186 t~~fs~~ygN~~YNPfHmlsIafl~gsaLl~AmHGatILa~~~ 228 (307)
T 1rzh_M 186 TNNFSLVHGNLFYNPFHGLSIAFLYGSALLFAMHGATILAVSR 228 (307)
T ss_dssp HHHHHHHTTCGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHTGG
T ss_pred HHHCCHHCCCEEECHHHHHHHHHHHHHHHHHHHCCHHHHEEEC
T ss_conf 3102412142377668876678887328998703114411103
No 8
>1p6v_A SSRA-binding protein; SMPB, tmRNA, trans-translation, protein-RNA complex, RNA binding protein/RNA complex; 3.20A {Aquifex aeolicus} SCOP: b.111.1.1 PDB: 2ob7_B 1k8h_A 1zc8_K
Probab=5.91 E-value=99 Score=10.37 Aligned_cols=21 Identities=24% Similarity=0.469 Sum_probs=9.7
Q ss_pred CCCCCCCHHHHHHCCHHHCEE
Q ss_conf 887546899995008431568
Q gi|254780862|r 169 RDIKRQDISKQLESNPDNSIV 189 (199)
Q Consensus 169 ~~~krq~~~~q~~~~~~~~i~ 189 (199)
+..|..|..++..|..+++++
T Consensus 135 ~~iK~rd~~re~~R~~K~~~~ 155 (156)
T 1p6v_A 135 RELKEKAMKRELEREFKGKIH 155 (156)
T ss_dssp ---------------------
T ss_pred HHHHHHHHHHHHHHHHHHCCC
T ss_conf 789888999999999875017
No 9
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=4.82 E-value=1.3e+02 Score=9.76 Aligned_cols=22 Identities=32% Similarity=0.753 Sum_probs=0.0
Q ss_pred HHHHHHHHHHH--HHHHCCCCCCC
Q ss_conf 99999999999--99750588754
Q gi|254780862|r 152 ILLLSMIGAIV--LMLRHRRDIKR 173 (199)
Q Consensus 152 iLLvamiGAi~--La~~~~~~~kr 173 (199)
+||.-.+|.+. |.+|++.+.++
T Consensus 21 ill~lvi~vv~gilikrr~qkirk 44 (44)
T 2jwa_A 21 ILLVVVLGVVFGILIKRRQQKIRK 44 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHCSCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 999999999999997988887039
No 10
>2gsm_A Cytochrome C oxidase subunit 1; transmembrane protein complex, oxidoreductase; HET: DMU HEA TRD; 2.00A {Rhodobacter sphaeroides} SCOP: f.24.1.1 PDB: 1m56_A* 3dtu_A* 3fye_A* 3fyi_A* 1m57_A* 3hb3_A* 1ar1_A* 3ehb_A* 1qle_A*
Probab=4.73 E-value=1.3e+02 Score=9.71 Aligned_cols=41 Identities=17% Similarity=0.503 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999997242899999999999999999
Q gi|254780862|r 5 SLFFYLFSFMAIISSFLVVTVRNPIYSVFSLIFAFVNAAGL 45 (199)
Q Consensus 5 ~i~F~~~a~l~i~sal~vi~~kn~v~s~l~Li~~f~~vAgl 45 (199)
...++++-...+.+.+....+|+|+++-.+.+.++.+++.+
T Consensus 286 eVYi~iLPa~Gi~s~iip~~a~k~lfg~~~~~~a~~~i~~l 326 (566)
T 2gsm_A 286 EVYIIVLPAFGIVSHVIATFAKKPIFGYLPMVYAMVAIGVL 326 (566)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHH
T ss_pred EEEEHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
T ss_conf 34201411789999999972177776738999999999997
Done!